ID:

dpe_1415

 Coordinate:

scaffold_3:6797110-6797374 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.7 -13.7 -13.5 -13.5

Flybase annnotation

intron [Dper\GL21494-in]; CDS [Dper\GL21494-cds]; exon [dper_GLEANR_3593:2]; CDS [Dper\GL21494-cds]; exon [dper_GLEANR_3593:3]; intron [Dper\GL21494-in]

No Repeatable elements found

Sense Strand Reads

---------#########################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCTATTCAGGTCCCAAAACGATCTTCTTCTGGGCGCCCGTATTCAAGTGGGTAAGTTTGCAATTCCTCCTGCTATTCGGCAGTTACATAACTGGGAGAGCGCACGACCTTCACTAATTTTCATTATCGCACACACATTGAAATCCCAGCGACCATATAGTAGAAATCTGTTCGCAGGTACCATTAAATGAAATAATTTTGATTATTCCGAGCAACCAGCTTGGACGCGTCTGATAACTGAGTGTTTGTGTGTGCGTGTGCGTGTTCGTGTGGATTGTGGAAAACTTTGCTAACACATCTATCCCTTCCCGTCTAGGGTCTCGTTGCAGCCGGACTGGGTGATTTGGCCAGGCCAGCGGACACAAT
*********************************************************************************************************************************************************............((......((........................(((...(((((((.....)))))))...)))))......))***************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M021
embryo
 V111
male body		 M042
female body
 V057
head
 V042
embryo
...............AAACGATCTTCTTCTGGGC........................................................................................................................................................................................................................................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0
...............AAACGATCTTCTTCTGGG............................................................................................................................................................................................................................................................................................................................................ 18 0 1 2.00 2 2 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................GTTGCAGCCGGACTGGGTG......................... 19 0 1 2.00 2 0 2 0 0 0
...................................................................................................................................................................................................................................................................................................................................................GATTTGGCCAGGCCAGCGGAC..... 21 0 1 2.00 2 1 1 0 0 0
....................................................................................................................................................................................................................................................................................................................................................ATTTGGCCAGGCCAGCGGAC..... 20 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................ATATAGTAGAAATCTGTTCGCAGGT........................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
.................ACGATCTTCTTCTGGGCGCCC....................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0
..........................................................................................................................................................................................................................CTTGGACGCGTCTGATAACTGA............................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0
.........GTCCCAAAGCGATCTTCTTCTGG............................................................................................................................................................................................................................................................................................................................................. 23 1 1 1.00 1 0 0 1 0 0
.................................................................................................................................................................................................................................................................................................................................GTTGCAGCCGGACTGGGTGA........................ 20 0 1 1.00 1 0 1 0 0 0
.................................................................................................................................................................................................................................................................................................................................................GTGATTTGGCCAGGCCAGCGGACA.... 24 0 1 1.00 1 1 0 0 0 0
..............AAAACGATCTTCTTCTGGGCGCCC....................................................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................GTGGGGTCTCGTTGCAGCCGGACTGGGT.......................... 28 2 1 1.00 1 0 1 0 0 0
.............CAAAACGATCTTCTTCTGGGC........................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................................................................................................................................................................................GTCTCGTTGCAGCCGGACTGGGTGA........................ 25 0 1 1.00 1 0 1 0 0 0
......................................................................................................................................................................................................................................................................................................................AGTGGGGTCTCGTTGCAGCCGGA................................ 23 3 1 1.00 1 0 1 0 0 0
....................................................................................................................................................................................................................................................................GTGTTCGTGTGGATTGTGGA..................................................................................... 20 0 1 1.00 1 0 1 0 0 0
......................................................................................................................................................................................................................................................................................................................AGTGGGGTCTCGTTGCAGCCGGACT.............................. 25 3 1 1.00 1 0 1 0 0 0
...................................................................................................................................................................................................................................................................CGTGATCGTGTGGATTGTGCA..................................................................................... 21 2 1 1.00 1 0 0 0 1 0
............................................................................................................................................................................................................................................................................................................................GTCTCGTTGCAGCCGGACT.............................. 19 0 1 1.00 1 0 0 1 0 0
...............AAACGATCTTCTTCTGGGCGC......................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................GGGGTCTCGTTGCAGCCGGACTGGGT.......................... 26 1 1 1.00 1 0 1 0 0 0
..........................................................................................................................................................................................................................................................................GTGTGATTTGTGGAAAACTT............................................................................... 20 2 2 0.50 1 0 0 0 1 0
..................................................................................................................................................................................................................GCAACCAGCTTGGACTCA......................................................................................................................................... 18 2 4 0.50 2 2 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................TGGCAGCGGGACTGGGTGGTT...................... 21 3 4 0.25 1 0 0 0 1 0
....................................................................................................................................................................................................................................................................................................................................GCAGCCGGACTGCGCGGTTT..................... 20 3 5 0.20 1 0 0 0 1 0
.................................................................................................................................................................................................................AGCTACCAGCTTGGTCTCGT........................................................................................................................................ 20 3 7 0.14 1 0 0 0 0 1
.............................................................................................................................................................................................................................................................CGTGTGCGTGTCAATGTGGAT........................................................................................... 21 3 15 0.07 1 0 0 0 1 0
...........................................................................................................................................................................................TAAGATAATTTTGATTATT............................................................................................................................................................... 19 2 18 0.06 1 0 0 0 0 1

Anti-sense strand reads

GGATAAGTCCAGGGTTTTGCTAGAAGAAGACCCGCGGGCATAAGTTCACCCATTCAAACGTTAAGGAGGACGATAAGCCGTCAATGTATTGACCCTCTCGCGTGCTGGAAGTGATTAAAAGTAATAGCGTGTGTGTAACTTTAGGGTCGCTGGTATATCATCTTTAGACAAGCGTCCATGGTAATTTACTTTATTAAAACTAATAAGGCTCGTTGGTCGAACCTGCGCAGACTATTGACTCACAAACACACACGCACACGCACAAGCACACCTAACACCTTTTGAAACGATTGTGTAGATAGGGAAGGGCAGATCCCAGAGCAACGTCGGCCTGACCCACTAAACCGGTCCGGTCGCCTGTGTTA
*****************************************************************************************************************************............((......((........................(((...(((((((.....)))))))...)))))......))********************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V111
male body		 V050
head
 V057
head
 M021
embryo
 M042
female body
.........................................................................................................TTGAAGTGGTTAAAAGTAATA............................................................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0
...............................................................................................................................CGTGTGTGTAACTTTAGGGTC......................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
..........CGGGTCTTGCTAGAAGAAG................................................................................................................................................................................................................................................................................................................................................ 19 2 7 0.43 3 2 0 0 0 1
......................................................................................................................................................................................................................................................................................................GTAGATAGGGAAGGGCATAAT.................................................. 21 3 3 0.33 1 0 1 0 0 0
.....................................................................................................................................................................................................................................................................................................TGTAGAAAGGGAAAGGCAGATA.................................................. 22 3 6 0.17 1 0 0 1 0 0
...................................................................................................................................................................................................................................................................................................................CGCAGGTCCCAAAGCAACG....................................... 19 3 20 0.15 3 0 0 0 3 0
......GTCCAAGGTTTTACTAGAGG................................................................................................................................................................................................................................................................................................................................................... 20 3 10 0.10 1 0 1 0 0 0
.................................................................................................TCGCGGGCTGGAAGAGATA......................................................................................................................................................................................................................................................... 19 3 14 0.07 1 0 0 1 0 0
.....AGTCCAGGGTTTTACTAAACG................................................................................................................................................................................................................................................................................................................................................... 21 3 16 0.06 1 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_3:6797060-6797424 - dpe_1415 CCTAT------TCAGGTCCCAAAACGATCTTCTTCTGGGCGCCCGTATTCAAGTGGGTAAGTTTGC------A--------ATTCCTCCTGCT---------------ATTCGGCAGTTACATAA-CTGGGAGAGCG-CACGACCTTCACTAATTTTCATTATCGCACACACATTG-------------AAATCC-CAGC-----------------GA------CCATATAGTAGAAATCTGTTCGCAGGTA--------------CCATTAAATGAAATAATTTTGATTATTCCGAGCAACCAGCTTGGACGCGTCTGATA---ACTG-AGTGT--TTGTGTGTGCGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCG---------TGTTCG--------------------------------------------------------------------------TGTG-GATT------------GTGGAA----------------------------------------------------------AACTTTGCT-----------------------------------AACACATCTATCC----CTTCCCGTCTAGGGTCTCG-----------------TTGCAGCCGGACTGGGTGATTTGGCCAGGCCAGCGGACACAAT
dp5 2:24018536-24018907 - dps_761 CCTAT------TCAGGTCCCAAAACGATCTTCTTCTGGGCGCCCGTATTCAAGTGGGTAAGTTTGC------A--------ATTTCTCCTGCT---------------AGTCGGCGGTTACATAA-CTGGGAGAGCG-CACGACCTTCACTAATTTTCATTATCGCACACACATTG-------------AAATCC-CAGC-----------------GA------CCATATAGTAGAAATCTGTTCGCAGGTA--------------CCATTAAATGAAATAATTTTGATTATTCCGAGCAACCAGCTTGGACGCGTCTGATA---ACTG-AGTGT--TTGTGTGTGCGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCG---------TGTTCG--------------------------------------------------------------------------TGTG-GATTGTG-----GATTGTGGAA----------------------------------------------------------AACTTTGCT-----------------------------------AACACATCTATCC----CTTCCCGTCTAGGGTCTCG-----------------TTGCAGCCGGACTGGGTGATTTGGCCAGGCCAGCGGACACAAT
droWil2 scf2_1100000004902:4677526-4677934 - T----------CTAGGTCCCAAGACTATATTCTTCTGGGCACCTTTGTTTAAATGGGTACGT--------------------------------------------------------TATATAATCTTTGACAGCTCCACGACCTTCGCTAATATTCATTATCGCATT--------------------------------------------------------TGATAT---AAAAATCTGTGTGTTAGTGTACGGCTGCTTCTGTGATTAAAAGCAACAACT-------------------TGC--------A------------------------TTGTTTTTGCTTTTTTATGATTATTATTTGTTTATTTATTTTGATCCAACTTGTTGGGAATCAAA--------------------------CTCAAACTGTG----------------TTGGT-------------------------------------------------------------------------------TCTGGCGAGGCACACGAGCGTTGACTCTGATGACTGATAACGACTATGACTGGGCAGATTCCATTGACGTCTAT--------A-----CCAT-----A----------------------------------------------------------AAGATTGTT-----------------------------------ATAATCTTCATTA----TTTTCATTGCAGGGACTTG-----------------TAATAGCTGGTCTAAGTGATTTAACCCGTCCTGCGGATACAAT
droVir3 scaffold_12855:5711237-5711587 - dvi_4084 T----------TTAGGTCCAAAAACGATTTTCTTCTGGGCACCAATTTTCAAATGGGTAAGTTACC------T--------ATCAGACA-GAC-TGA-CGGA--------CAGCCTGTTACATAA-TTTCGACT--G-CGTGACCTTCGCTAATTTTCATTATCTCTGTCT-GCTGCTGATA--TACA-AAATCT--AAT-----------------GA------CATTAATACAGATATCTGCGAGTGTGTG--------------CGA---------------------------------------------------------------------------ATTGCT-TTTT---ATGATTATTTGTTTATTCGAGCAGAATAATCTTGTTGGGTGTTGTTTTAGACAGCTGCCCGTTTAGAGAGCGCACGCGATAAGTCTACATCAGGGTTTGTTAGTGTGTGT------------------TTATGTGTGTGTG--------------------TGTG---------TGGTTG--------------------------------------------------------------------------TATG----T------------GTGGAA----------------------------------------------------------ATTTTT-----------------------------------------------------------------------------------------------------------------------------------ATT
droMoj3 scaffold_6540:6034758-6034891 - ACTATTC---GATAGGTCCAAAAACCGTTTTCTTTTGGGCACCAATAATTAAATGGGTAAGTAAACGAT------------AACAGACA-GAT-TGA-CAGA--------CAGCCTGTTACATAA-TACAGAC--TG-CATGACCTTCGCTATTTTTCATTATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_14906:8292177-8292672 + CCGCTTTGTTTTTAGGTCCCAAAACGATTTTCTTCTGGGCACCTATCTTCAAATGGGTAAGCTGAC------G--------GACAGACA-GAT-GGA-CGGATAATCTATCAGCCAGTTACATAA-TTTGGAC--TG-CATGACCTTCGCTAATTTGCATTATCACTGTCT-ACGACTGATA--GACA-ATATTT-TAAT-----------------GAAGAATTAT---AAACAGAAATCCGAGAGAGTGTCGCCGTCTGCT----CAG---------------------------------------------------------------------------ATTGCT-TTTT---ATGATTGCTGGTTTATTTGCGTACAATAAACTCGTTGAGAG--------------------------------C--------------GTCAGCGTCAATACCTGCGCACTTATATATACGTATATACATATATACACATATATGCCCCTGTGTGTGTGTGTGCGTGTTGAGATTGTGTT--------------------------------------------------------------------------TTTACAATT------------A------------------------------------------------------ACGATTGCAAATTCTGCTAATGTTAACTAATCAACAGAAATTTACAACTT-GATATACA----TTGTTTATT-----TTTAGGGTCTCG-----------------TCGCAGCTGGACTCAGTGATTTGGCGCGTCCGGCGGACACAAT
droAna3 scaffold_13340:15414147-15414597 - CTTTT------GTAGGGCCCAAGACCATCTTCTTTTGGGCACCCGTCTTCAAATGGGTAAGTGGCC------A--------GACAGTCGGGACAGGA-AGG--------------GATTACATAA-CTGGGACAGCG-AGCGACCTTCGCTGATTTTCATTATCGCACACATACTACCGCCCGCACTGTCAATCC-AAGC-----------------AG------TAGTAT---ACAAATCTGTGCGCAGGTG--------------CTATTAAACGAAATTATT-TGATTATTTTGAGCAACCTGC--------GCTTGATA---ACTGCCGTGT--GTCCATAT----GAGCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------TACA---------TATTCCGAGC---------TC--------------------------------------------CAC------------TGT--------G-----CTTTATAGAATTTTAAACAACCTACCTCGGAAATATGTCTCGCAGAAAACCAGTTTAGAAAGCACTCAACTTCACAAACACCAAACAAAGCAA-------------AACACTGAAATGTCTACCT----TT-----TTCAGGGTCTTG-----------------TCATTGCAGGATTAAGTGACTTGGCCCGTCCGGCCGACACAAT
droBip1 scf7180000396708:4616169-4616617 + TCC--------GTAGGACCCAAGACTATCTTCTTCTGGGCACCCTTCTTCAAATGGGTAAGTGACC------A--------GACAGACGGGACAGGA-AGG--------------GATTACATAA-CTGGGACATAG-CGCGACCTTCGCTGATTTTCATTATCGCACACATACTCGCGCGC--ACCATCAATCC-AAGC-----------------AG------CAGTAT---ACAAATCTGTGCGCAGGTG--------------CCATTAAACGAAATTATT-TGATTATTTTGAGCAACCTGC--------GCTTGATA---ACTG-C-CGT--GTCCATGTGAGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACA---------TGTTCCGAGC---------TA--------------------------------------------TAC------------TGT--------GACTTTGTTTATCGAATTTTAAACAAGCTACGTCGGAAATATGTCTCGCAGAAAACCAGTTTTGAATGCCTCCAAACACTCCAACAGCAAACAAAGCAA-------------AAT-CTTAAATATCTACCT----TT-----TTTAGGGTCTTG-----------------TCATCGCAGGATTAAGTGACTTGGCCCGTCCGGCTGACTCAAT
droKik1 scf7180000302387:448564-448816 - CCTCC------AAAGGTCCCAAGACGATCTTCTTTTGGGCGCCCGTCTTCAAATGGGTGAGTTGAC------A--------AG----CG-AAG-TGA-AGG--------------GATTACATAA-CTTGGACAGCGCGGCGACCTTCACTGATTTTCGTTATCGCACCAACACATTCGCAC--GCAATAAATCCGCAGC-----------------AA------CGGTAG---ACAAATCTGTGCGCAGGTG--------------CCATTAAATGAAATTATTTTGATTATTCCGAGCAACCTGC------GCGCTTGATA---ACCG-TCAGCTGGTTTGTGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000454104:1448150-1448428 + TTT--------TTAGGTCCCAAAACTGTTTTCTTCTGGGCCCCCGTCTTCAAATGGGTAAGTTGGCAATAAAAGGCAACAAAAAAGCCA-GAC-AGA-AGG--------------GATTACATAA-TTCGGACAGCG-CACGACCTTCGCTGATTTTCATTATCGCACACATACGTTCCTTC--ACAACAAATCCAAAAC-----------------GA------CGGTAG---ACAAATCTGAACGCAGGTG--------------CCATTAAATGAAATTATT-TGATTATTTCGAGCAACCTGC--------GCTTGATA---ACTGGACTGC--GTTAGTGTTTTTAAGCGGAT-------------------------------------------------------------------------------------------------T---------G---------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
droEle1 scf7180000491047:248203-248486 + T----------CCAGGTCCTAAGACGATATTCTTCTGGGCACCCGTGTTCAAATGGGTAAGTTGAC------A--------GAAA-CCA------GA-AGG--------------GATTACATAA-CTCGGACGACG-GGCGACCTTCGCTAATTTTCATTATCGCACACACACATTCATTC--GCAATAAATCCGAAAC-----------------GA------CGGTAG---ACAAATCTGTGCGCAGGTG--------------CCATTAAATGAAATTATT-TAATTACTTCGAGCGAACTGC--------GCCTGATA---ACTG-CCCGC--GTTCGTGTATGTGAGGAGAT-------------------------------------------------------------------------------------------------T---------G---------------------------------------------------------------CGTTTGTTAA--------------------------------------------------------------------------TTTC-AATC------------GTGGAA----------------------------------------------------------AC---------------------------------------------------------------------------------------------------------------------------------------CCT
droRho1 scf7180000777865:168949-169233 - ATT-------TCCAGGTCCCAAGACTATATTCTTTTGGGCACCCGTTTTCAAGTGGGTAAGTTGAC------A--------GAAA-CCA-GAC-GGA-A-G--------------GATTACATAA-CTCGGACAGCG-GGCGACCTTCGCTGATTTTCATTATCGCACACATACATTCGTTC--GCAATAAATCCGAAAC-----------------GA------CGGTAG---ACAAATCTGTGCGCAGGTG--------------CCATTAAATGAAATTATT-TGATTATTCCGAGCAACCTGC--------GCCTGATA---ACTG-TTCGC--GTTCGTGTTTGTGAGCGGAT-------------------------------------------------------------------------------------------------T---------G---------------------------------------------------------------CGATTGTTGG--------------------------------------------------------------------------TTTC-AATT------------ATGGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302075:5410175-5410480 - CTTCC------GCAGGTCCCAAGACCGTCTTCTTCTGGGCACCCGTCTTCAAGTGGGTAAGTTGGG-TTGATG--------GGCCACCA-GAC-GGA-TGG--------------GATTACATAA-CTCGGACAACG-CACGACCTTCGCTGATTTTCATTATCGCACACATAC----GTTC--GCCATAAATCCGAAATAACAGCCGTAGACGGTAGA------CGGTAG---ACAAATCTGTGCGCAGGTG--------------CCATTAAATGGAATTATTTTGATTATTCCGAGCAACCTGC--------GCCTGATA---AGTGGACTGA--CGTTGTGTTTGTGCGCCAAT-------------------------------------------------------------------------------------------------A---------G---------------------------------------------------------------CTATTGTTTC--------------------------------------------------------------------------TTTG-AATT------------ATGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415245:120924-121213 + CTTATAT---TTCAGGTCCAAAGACGATATTCTTCTGGGCACCCGTCTTCAAATGGGTAAGTTTAC------C--------AAAAAACA-GAC-GGAAGGG--------------GATTACATAA-CTCGGACAACG-CACGACCTTCGCTGATTTTCATTATCGCACACATAC----GTTC--GCTATAAATCCGAAAC-----------------GA------CGGTAG---ACAAATCTGTGCGCAGGTG--------------CCATTAAATAAAATTATT-TGATTATTTCGAGCAACCTGC--------GCTTGATGATAAGTG-ACTGC--TTTTGTGTTTGTGCGCGAAA-------------------------------------------------------------------------------------------------G---------G---------------------------------------------------------------CGATTGTTAC--------------------------------------------------------------------------TTTG-AATT------------ATGGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000407136:293038-293293 + GCAATT----TCTAGGTCCCAAGACGATATTCTTTTGGGCACCCGTCTTCAAATGGGTAAGTTGAC------G--------AG-TGCCA-GAC-GGA-TGG--------------GATTACATAA-CTCGGACGACG-CACGACCTTCGCTGATTTTCATTATCGCACACATAC----GTTC--ACTATAAATCCGAAAC-----------------GA------CGGTAG---ACAAATCTGTGCGCAGGTG--------------CTATTAAATGAAATTATT-TCATTATTCCGAACAACCTGC--------GCTTGATA---ACCG-TTTGC--GTTCGTGTTAGTGAGCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr3R:5398732-5399020 - TGAT------TCCAGGTCCCAAGACGATATTCTTTTGGGCACCCGTCTTCAAATGGGTAAGTAGAC------A--------GAAAGCCA-GAC-GGA-TGG--------------GATTACATAA-CTCGGACAACG-CACGACCTTCGCTGATTTTCATTATCGCACACATACTATAGTTC--ACCATAAATCCGAAAC-----------------GA------CGGTAG---ACAAATCTGAGCGCAGGTG--------------CCATTAAATGAAATTATT-TGATTATTTCGAGCAACCTGC--------GCTTGATAACAACCG-CATAC--GGTTGTGTTCGTGAGCGGAT-------------------------------------------------------------------------------------------------T---------G---------------------------------------------------------------C-----------------------------------------------------------------------------------CTTC-TGTT------------GTGGAA----------------------------------------------------------CCCTAT-------------------------------------------------------------------------------------------------------------------------------------G
droSim2 3r:15627804-15628086 + dsi_15910 T---------TCCAGGTCCCAAGACGATATTCTTCTGGGCACCCGTCTTCAAATGGGTAAGTAGAC------A--------GAAACCCA-GAC-GGA-TGG--------------GATTACATAA-CTCGGACGACG-CACGACCTTCGCTGATTTTCATTATCGCACACATACTATAGTTC--ACCATAAATCCGAAAC-----------------GA------CGGTAG---ACAAATCTGAGCGCAGGTG--------------CCATTAAATGAAATTATT-TGATTATTTCGAGCAACCTGC--------GCTTGATA---ACCG-CATGC--GGTTGTGTTCGTGAGCGGAT-------------------------------------------------------------------------------------------------T---------G---------------------------------------------------------------C-----------------------------------------------------------------------------------CTTC-TGTT------------ATGGAA----------------------------------------------------------CCCTAT-------------------------------------------------------------------------------------------------------------------------------------G
droSec2 scaffold_0:16498068-16498327 + T---------TCCAGGTCCCAAGACGATATTCTTCTGGGCACCCGTCTTCAAATGGGTAAGTAGAC------A--------GAAACCTA-GAC-GGA-TGG--------------GATTACATAA-CTCGGACGACG-CACGACCTTCGCTGATTTTCATTATCGCACACATACTATAGTTC--ACCATAAATCGGAAAC-----------------GA------CGGTAG---ACAAATCTGAGCGCAGGTG--------------CCATTAAATGAAATTATT-TGATTATTTCGAGCAACCTGC--------GCTTGATA---ACCG-CATGC--GGTTGTGTTCGTGAGCGGAT-------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 3R:9450212-9450476 - GCT-------TCCAGGTCCCAAGACGATATTCTTCTGGGCTCCCGTTTTCAAGTGGGTAAGTAGGAGA---CA--------GAAAGCCA-GAC-GAA-TGG--------------GATTACATAA-CTCGGACGACG-CACGACCTTCGCTGATTTTCATTATCGCACACATACTATAGTTC--ACCATAAATCCGAAAC-----------------GA------CGGTAG---ACAAATCTGTGCGCAGGTG--------------CCATTAAATGAAATTATT-TGATTATTTCGAGCAACCTGC--------GCTTGATA---ACCG-CATGC--GGTTGTGTTTGTGAGCGGAT-------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4770:16203594-16203987 + CTTCT------TCAGGTCCCAAGACCATATTCTTCTGGGGTCCAATCGTGAAATGGGTAAGTTTCG-----------------------------GA-ACT--------------ACTTGCATAA-CCATGA-ACCC-TGCGTCCTTAGCCAATTCCCATTATCACCG---TAC---------------------------------------------------TGATAA---ACAAATCTGTGGGCGCATA---------------------------------------------------------------------------------------------TGGTG-TTTT---ATTAATATTTGTTTAGTTCT---CAGCAAACCTGTTCAAG--------------------------------CCCGCGATAAA----------------TTAGTACGTAT------------------ATGTATGTATGTATATAC------------------------CA----TTTTGCTC---------TCCACGCGCG-AGATTCTGATAACTGA--------ATGATTGTGCGGTTTA----------TGT--------G-----GCTCATGGAA----------------------------------------------------------TA-TTTGAT-----------------------------------AATACTTTTGCTG----TTTTGCCTGGAAGCTTTGGCAACATGCCATTCAGATTTGCAGTC-AATGGGGGGACTTACCCTGTATTATCGGCCCGAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
CCTAT------TCAGGTCCCAAAACGATCTTCTTCTGGGCGCCCGTATTCAAGTGGGTAAGTTTGC------A--------ATTCCTCCTGCT---------------ATTCGGCAGTTACATAA-CTGGGAGAGCG-CACGACCTTCACTAATTTTCATTATCGCACACACATTG-------------AAATCC-CAGC-----------------GA------CCATATAGTAGAAATCTGTTCGCAGGTA--------------CCATTAAATGAAATAATTTTGATTATTCCGAGCAACCAGCTTGGACGCGTCTGATA---ACTG-AGTGT--TTGTGTGTGCGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCG---------TGTTCG--------------------------------------------------------------------------TGTG-GATT------------GTGGAA----------------------------------------------------------AACTTTGCT-----------------------------------AACACATCTATCC----CTTCCCGTCTAGGGTCTCG-----------------TTGCAGCCGGACTGGGTGATTTGGCCAGGCCAGCGGACACAATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................AAACGATCTTCTTCTGGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002200000
.....................AAACGATCTTCTTCTGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----------------TTGCAGCCGGACTGGGTG.........................1912.002000002
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGCCAGGCCAGCGGAC.....2112.002100001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGCCAGGCCAGCGGAC.....2011.001100000
...................................................................................................................................................................................................................................ATATAGTAGAAATCTGTTCGCAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.......................ACGATCTTCTTCTGGGCGCCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
..................................................................................................................................................................................................................................................................................................................CTTGGACGCGTCTGATA---ACTG-A..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----------------TTGCAGCCGGACTGGGTGA........................2011.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTTGGCCAGGCCAGCGGACA....2411.001100000
....................AAAACGATCTTCTTCTGGGCGCCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
...................CAAAACGATCTTCTTCTGGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCG-----------------TTGCAGCCGGACTGGGTGA........................2511.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------TGTTCG--------------------------------------------------------------------------TGTG-GATT------------GTGGA.......................................................................................................................................................................................................2011.001000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCG-----------------TTGCAGCCGGACT..............................1911.001010000
.....................AAACGATCTTCTTCTGGGCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
dp5
CCTAT------TCAGGTCCCAAAACGATCTTCTTCTGGGCGCCCGTATTCAAGTGGGTAAGTTTGC------A--------ATTTCTCCTGCT---------------AGTCGGCGGTTACATAA-CTGGGAGAGCG-CACGACCTTCACTAATTTTCATTATCGCACACACATTG-------------AAATCC-CAGC-----------------GA------CCATATAGTAGAAATCTGTTCGCAGGTA--------------CCATTAAATGAAATAATTTTGATTATTCCGAGCAACCAGCTTGGACGCGTCTGATA---ACTG-AGTGT--TTGTGTGTGCGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCG---------TGTTCG--------------------------------------------------------------------------TGTG-GATTGTG-----GATTGTGGAA----------------------------------------------------------AACTTTGCT-----------------------------------AACACATCTATCC----CTTCCCGTCTAGGGTCTCG-----------------TTGCAGCCGGACTGGGTGATTTGGCCAGGCCAGCGGACACAATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGGACTGGGTGATTTGGCCAGGC.............2612.0020100000001
...............................................................................................................................................................................................................................................................................................GATTATTCCGAGCAACCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100000
.....................AAACGATCTTCTTCTGGGCGCCCGTAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATTTGGCCAGGCCAGCGG.......2211.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGACTGGGTGATTTGGCCAGGCC............2411.0010001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----------------TTGCAGCCGGACTGGGTGA........................2011.0010000010000
.........................GATCTTCTTCTGGGCGCCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGCCAGGCCAGCGGACA....2111.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----------------TTGCAGCCGGACTGGGTG.........................1911.0010100000000
........................................................................................................................................................................................................................................................................................................................................TG-AGTGT--TTGTGTGTGCGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGC...........................................................................................................................................................................................................................................................................................................................2311.0010000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATTTGGCCAGGCCAGCGGACAC...2611.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGCCAGGCCAGCGGAC.....2111.0010100000000
...............GTCCCAAAACGATCTTCTTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----------------TTGCAGCCGGACTGGGTGATTTG....................2411.0010000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----------------TTGCAGCCGGACTGGGTGAT.......................2111.0010000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCG-----------------TTGCAGCCGGACTGGGTG.........................2111.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCG-----------------TTGCAGCCGGACTGGGT..........................2311.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGGACTGGGTGATTTGGCCAGGCC............2611.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCAGGCCAGCGGACACA..2011.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGCCAGGCCAGCGGACACA..2411.0010100000000
..............GGTCCCAAAACGATCTTCTTCTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGCCAGGCCAGCGGACAC...2311.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGTGATTTGGCCAGGCCAGCGGAC.....2711.0010000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGCCAGGCCAGCGGACAC...2211.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCCAGGCCAGCGGACAC...2011.0010100000000
..............................................................................................................................................................ATTATCGCACACACATTG-------------AA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTG-GATTGTG-----GATTGTGGAA----------------------------------------------------------............................................................................................................................................2050.4020000000002
.............................................................................................................................................................................................................................................................................................................................................TGT--TTGTGTGTGCGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGC...........................................................................................................................................................................................................................................................................................................................1970.1410000001000
droWil2
T----------CTAGGTCCCAAGACTATATTCTTCTGGGCACCTTTGTTTAAATGGGTACGT--------------------------------------------------------TATATAATCTTTGACAGCTCCACGACCTTCGCTAATATTCATTATCGCATT--------------------------------------------------------TGATAT---AAAAATCTGTGTGTTAGTGTACGGCTGCTTCTGTGATTAAAAGCAACAACT-------------------TGC--------A------------------------TTGTTTTTGCTTTTTTATGATTATTATTTGTTTATTTATTTTGATCCAACTTGTTGGGAATCAAA--------------------------CTCAAACTGTG----------------TTGGT-------------------------------------------------------------------------------TCTGGCGAGGCACACGAGCGTTGACTCTGATGACTGATAACGACTATGACTGGGCAGATTCCATTGACGTCTAT--------A-----CCAT-----A----------------------------------------------------------AAGATTGTT-----------------------------------ATAATCTTCATTA----TTTTCATTGCAGGGACTTG-----------------TAATAGCTGGTCTAAGTGATTTAACCCGTCCTGCGGATACAATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................................................................................................................AT---AAAAATCTGTGTGTTAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200200
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACCCGTCCTGCGGAT.....1812.00220000
...................CAAGACTATATTCTTCTGGGCACCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000
........................................................................................................................TATAATCTTTGACAGCTCCAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
....................................................................................................................................................................................................................................................GTGTTAGTGTACGGCTGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGGGACTTG-----------------TAATAGCA...................................2111.00101000
...........................TATTCTTCTGGGCACCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100
.........................TATATTCTTCTGGGCACCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTGTG----------------TTGGT-------------------------------------------------------------------------------TCTGGCGA................................................................................................................................................................................................................................................................................................2111.00110000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----------------TAATAGCTGGTCTAAGT..........................1811.00100100
droVir3
T----------TTAGGTCCAAAAACGATTTTCTTCTGGGCACCAATTTTCAAATGGGTAAGTTACC------T--------ATCAGACA-GAC-TGA-CGGA--------CAGCCTGTTACATAA-TTTCGACT--G-CGTGACCTTCGCTAATTTTCATTATCTCTGTCT-GCTGCTGATA--TACA-AAATCT--AAT-----------------GA------CATTAATACAGATATCTGCGAGTGTGTG--------------CGA---------------------------------------------------------------------------ATTGCT-TTTT---ATGATTATTTGTTTATTCGAGCAGAATAATCTTGTTGGGTGTTGTTTTAGACAGCTGCCCGTTTAGAGAGCGCACGCGATAAGTCTACATCAGGGTTTGTTAGTGTGTGT------------------TTATGTGTGTGTG--------------------TGTG---------TGGTTG--------------------------------------------------------------------------TATG----T------------GTGGAA----------------------------------------------------------ATTTTT-----------------------------------------------------------------------------------------------------------------------------------ATTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................TTCTTCTGGGCACCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1513.003000000000000000000000000000000000000000000000000010000000200000
.............................TTCTTCTGGGCACCAATTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002001000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATAATCTTGTTGGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000020000000000000000000000000000000000000000000000000000000
.....................AAACGATTTTCTTCTGGGCAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000100000000001000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................ATATCTGCGAGTGTGTG--------------CGA---------------------------------------------------------------------------A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000020000000000000000000000000000000000000000000000000000
............................TTTCTTCTGGGCACCAATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000100000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACATCAGGGTTTGTTAGTGTGTG..................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
....................AAAACGATTTTCTTCTGGGCAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
................................TTCTGGGCACCAATTTTCAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000100000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGTTAGTGTGTGT------------------TTATA..........................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000100000000000000000000000000000000000
.........................................................TAAGTTACC------T--------ATCAGACA-GAC-T.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................ATACAGATATCTGCGAGTGTGTG--------------C..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000001000000000000000000000000000000000000000000000000
...............................................................ACC------T--------ATCAGACA-GAC-TGA-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG--------------------TGTG---------TGGTTG--------------------------------------------------------------------------TATG----T------------GTGG........................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.................CCAAAAACGATTTTCTTCTGGGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................AC-TGA-CGGA--------CAGCCTGTTAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000100000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCTACATCAGGGTTTGTTAGTG......................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000001000000000000000000000000000000000000000
............................TTTCTTCTGGGCACCAATTTTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTTAGAGAGCGCACGC..................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000100000000000000000000000000000000000000000
........................CGATTTTCTTCTGGGCAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCCCGTTTAGAGAGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................TAA-TTTCGACT--G-CGTGACCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
..............GGTCCAAAAACGATTTTCTTCTGGGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................GATATCTGCGAGTGTGTG--------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000010000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTGCCCGTTTAGAGAGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000100000000000000000000000000000
.....................AAACGATTTTCTTCTGGGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTAGTGTGTGT------------------TTATGTG........................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.....................................................................................GACA-GAC-TGA-CGGA--------CAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.501010000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTG--------------------TGTG---------TGGTTG--------------------------------------------------------------------------TATG----T------------G...........................................................................................................................................................................................................1940.502000000020000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTG--------------------TGTG---------TGGTTG--------------------------------------------------------------------------TATG----.........................................................................................................................................................................................................................2140.502000000000000000000000000000000000000000000000000000000000002000
droMoj3
ACTATTC---GATAGGTCCAAAAACCGTTTTCTTTTGGGCACCAATAATTAAATGGGTAAGTAAACGAT------------AACAGACA-GAT-TGA-CAGA--------CAGCCTGTTACATAA-TACAGAC--TG-CATGACCTTCGCTATTTTTCATTATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................CCAAAAACCGTTTTCTTTTGGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
droGri2
CCGCTTTGTTTTTAGGTCCCAAAACGATTTTCTTCTGGGCACCTATCTTCAAATGGGTAAGCTGAC------G--------GACAGACA-GAT-GGA-CGGATAATCTATCAGCCAGTTACATAA-TTTGGAC--TG-CATGACCTTCGCTAATTTGCATTATCACTGTCT-ACGACTGATA--GACA-ATATTT-TAAT-----------------GAAGAATTAT---AAACAGAAATCCGAGAGAGTGTCGCCGTCTGCT----CAG---------------------------------------------------------------------------ATTGCT-TTTT---ATGATTGCTGGTTTATTTGCGTACAATAAACTCGTTGAGAG--------------------------------C--------------GTCAGCGTCAATACCTGCGCACTTATATATACGTATATACATATATACACATATATGCCCCTGTGTGTGTGTGTGCGTGTTGAGATTGTGTT--------------------------------------------------------------------------TTTACAATT------------A------------------------------------------------------ACGATTGCAAATTCTGCTAATGTTAACTAATCAACAGAAATTTACAACTT-GATATACA----TTGTTTATT-----TTTAGGGTCTCG-----------------TCGCAGCTGGACTCAGTGATTTGGCGCGTCCGGCGGACACAATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGCGCGTCCGGCGGA......2011.00101
droAna3
CTTTT------GTAGGGCCCAAGACCATCTTCTTTTGGGCACCCGTCTTCAAATGGGTAAGTGGCC------A--------GACAGTCGGGACAGGA-AGG--------------GATTACATAA-CTGGGACAGCG-AGCGACCTTCGCTGATTTTCATTATCGCACACATACTACCGCCCGCACTGTCAATCC-AAGC-----------------AG------TAGTAT---ACAAATCTGTGCGCAGGTG--------------CTATTAAACGAAATTATT-TGATTATTTTGAGCAACCTGC--------GCTTGATA---ACTGCCGTGT--GTCCATAT----GAGCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------TACA---------TATTCCGAGC---------TC--------------------------------------------CAC------------TGT--------G-----CTTTATAGAATTTTAAACAACCTACCTCGGAAATATGTCTCGCAGAAAACCAGTTTAGAAAGCACTCAACTTCACAAACACCAAACAAAGCAA-------------AACACTGAAATGTCTACCT----TT-----TTCAGGGTCTTG-----------------TCATTGCAGGATTAAGTGACTTGGCCCGTCCGGCCGACACAATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAGTGACTTGGCCCGTCCGGC.........2411.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGCAGAAAACCAGTTTAGAAAGC.................................................................................................................................................2511.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTAAGTGACTTGGCCCGTCC............2311.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTGACTTGGCCCGTCCG...........2011.001100000
...................CAAGACCATCTTCTTTTGGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
........................CCATCTTCTTTTGGGCACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGGCCCGTCCGGCCGACACA..2411.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGTGACTTGGCCCGTCC............2011.001000010
...........................................CGTCTTCAAATGGGTAAGTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGGATTAAGTGACTTG....................1911.001000010
droBip1
TCC--------GTAGGACCCAAGACTATCTTCTTCTGGGCACCCTTCTTCAAATGGGTAAGTGACC------A--------GACAGACGGGACAGGA-AGG--------------GATTACATAA-CTGGGACATAG-CGCGACCTTCGCTGATTTTCATTATCGCACACATACTCGCGCGC--ACCATCAATCC-AAGC-----------------AG------CAGTAT---ACAAATCTGTGCGCAGGTG--------------CCATTAAACGAAATTATT-TGATTATTTTGAGCAACCTGC--------GCTTGATA---ACTG-C-CGT--GTCCATGTGAGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACA---------TGTTCCGAGC---------TA--------------------------------------------TAC------------TGT--------GACTTTGTTTATCGAATTTTAAACAAGCTACGTCGGAAATATGTCTCGCAGAAAACCAGTTTTGAATGCCTCCAAACACTCCAACAGCAAACAAAGCAA-------------AAT-CTTAAATATCTACCT----TT-----TTTAGGGTCTTG-----------------TCATCGCAGGATTAAGTGACTTGGCCCGTCCGGCTGACTCAATSizeHit CountTotal NormTotal
No Reads
droKik1
CCTCC------AAAGGTCCCAAGACGATCTTCTTTTGGGCGCCCGTCTTCAAATGGGTGAGTTGAC------A--------AG----CG-AAG-TGA-AGG--------------GATTACATAA-CTTGGACAGCGCGGCGACCTTCACTGATTTTCGTTATCGCACCAACACATTCGCAC--GCAATAAATCCGCAGC-----------------AA------CGGTAG---ACAAATCTGTGCGCAGGTG--------------CCATTAAATGAAATTATTTTGATTATTCCGAGCAACCTGC------GCGCTTGATA---ACCG-TCAGCTGGTTTGTGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TTT--------TTAGGTCCCAAAACTGTTTTCTTCTGGGCCCCCGTCTTCAAATGGGTAAGTTGGCAATAAAAGGCAACAAAAAAGCCA-GAC-AGA-AGG--------------GATTACATAA-TTCGGACAGCG-CACGACCTTCGCTGATTTTCATTATCGCACACATACGTTCCTTC--ACAACAAATCCAAAAC-----------------GA------CGGTAG---ACAAATCTGAACGCAGGTG--------------CCATTAAATGAAATTATT-TGATTATTTCGAGCAACCTGC--------GCTTGATA---ACTGGACTGC--GTTAGTGTTTTTAAGCGGAT-------------------------------------------------------------------------------------------------T---------G---------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSizeHit CountTotal NormTotal
No Reads
droEle1
T----------CCAGGTCCTAAGACGATATTCTTCTGGGCACCCGTGTTCAAATGGGTAAGTTGAC------A--------GAAA-CCA------GA-AGG--------------GATTACATAA-CTCGGACGACG-GGCGACCTTCGCTAATTTTCATTATCGCACACACACATTCATTC--GCAATAAATCCGAAAC-----------------GA------CGGTAG---ACAAATCTGTGCGCAGGTG--------------CCATTAAATGAAATTATT-TAATTACTTCGAGCGAACTGC--------GCCTGATA---ACTG-CCCGC--GTTCGTGTATGTGAGGAGAT-------------------------------------------------------------------------------------------------T---------G---------------------------------------------------------------CGTTTGTTAA--------------------------------------------------------------------------TTTC-AATC------------GTGGAA----------------------------------------------------------AC---------------------------------------------------------------------------------------------------------------------------------------CCTSizeHit CountTotal NormTotal
No Reads
droRho1
ATT-------TCCAGGTCCCAAGACTATATTCTTTTGGGCACCCGTTTTCAAGTGGGTAAGTTGAC------A--------GAAA-CCA-GAC-GGA-A-G--------------GATTACATAA-CTCGGACAGCG-GGCGACCTTCGCTGATTTTCATTATCGCACACATACATTCGTTC--GCAATAAATCCGAAAC-----------------GA------CGGTAG---ACAAATCTGTGCGCAGGTG--------------CCATTAAATGAAATTATT-TGATTATTCCGAGCAACCTGC--------GCCTGATA---ACTG-TTCGC--GTTCGTGTTTGTGAGCGGAT-------------------------------------------------------------------------------------------------T---------G---------------------------------------------------------------CGATTGTTGG--------------------------------------------------------------------------TTTC-AATT------------ATGGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CTTCC------GCAGGTCCCAAGACCGTCTTCTTCTGGGCACCCGTCTTCAAGTGGGTAAGTTGGG-TTGATG--------GGCCACCA-GAC-GGA-TGG--------------GATTACATAA-CTCGGACAACG-CACGACCTTCGCTGATTTTCATTATCGCACACATAC----GTTC--GCCATAAATCCGAAATAACAGCCGTAGACGGTAGA------CGGTAG---ACAAATCTGTGCGCAGGTG--------------CCATTAAATGGAATTATTTTGATTATTCCGAGCAACCTGC--------GCCTGATA---AGTGGACTGA--CGTTGTGTTTGTGCGCCAAT-------------------------------------------------------------------------------------------------A---------G---------------------------------------------------------------CTATTGTTTC--------------------------------------------------------------------------TTTG-AATT------------ATGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CTTATAT---TTCAGGTCCAAAGACGATATTCTTCTGGGCACCCGTCTTCAAATGGGTAAGTTTAC------C--------AAAAAACA-GAC-GGAAGGG--------------GATTACATAA-CTCGGACAACG-CACGACCTTCGCTGATTTTCATTATCGCACACATAC----GTTC--GCTATAAATCCGAAAC-----------------GA------CGGTAG---ACAAATCTGTGCGCAGGTG--------------CCATTAAATAAAATTATT-TGATTATTTCGAGCAACCTGC--------GCTTGATGATAAGTG-ACTGC--TTTTGTGTTTGTGCGCGAAA-------------------------------------------------------------------------------------------------G---------G---------------------------------------------------------------CGATTGTTAC--------------------------------------------------------------------------TTTG-AATT------------ATGGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
GCAATT----TCTAGGTCCCAAGACGATATTCTTTTGGGCACCCGTCTTCAAATGGGTAAGTTGAC------G--------AG-TGCCA-GAC-GGA-TGG--------------GATTACATAA-CTCGGACGACG-CACGACCTTCGCTGATTTTCATTATCGCACACATAC----GTTC--ACTATAAATCCGAAAC-----------------GA------CGGTAG---ACAAATCTGTGCGCAGGTG--------------CTATTAAATGAAATTATT-TCATTATTCCGAACAACCTGC--------GCTTGATA---ACCG-TTTGC--GTTCGTGTTAGTGAGCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
TGAT------TCCAGGTCCCAAGACGATATTCTTTTGGGCACCCGTCTTCAAATGGGTAAGTAGAC------A--------GAAAGCCA-GAC-GGA-TGG--------------GATTACATAA-CTCGGACAACG-CACGACCTTCGCTGATTTTCATTATCGCACACATACTATAGTTC--ACCATAAATCCGAAAC-----------------GA------CGGTAG---ACAAATCTGAGCGCAGGTG--------------CCATTAAATGAAATTATT-TGATTATTTCGAGCAACCTGC--------GCTTGATAACAACCG-CATAC--GGTTGTGTTCGTGAGCGGAT-------------------------------------------------------------------------------------------------T---------G---------------------------------------------------------------C-----------------------------------------------------------------------------------CTTC-TGTT------------GTGGAA----------------------------------------------------------CCCTAT-------------------------------------------------------------------------------------------------------------------------------------GSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................AGACGATATTCTTTTGGGCACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................GACGATATTCTTTTGGGCACCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................CAAATCTGAGCGCAGGTG--------------CCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100000000000000000000000000
...............................................TTCAAATGGGTAAGTAGAC------A--------G....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GAT------TCCAGGTCCCAAGACGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
......................GACGATATTCTTTTGGGCACCCGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................ATCGCACACATACTATAGTTC--ACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................GAGCGGAT-------------------------------------------------------------------------------------------------T---------G---------------------------------------------------------------C-----------------------------------------------------------------------------------CTTC-TGTT------------GT..........................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................AAATCTGAGCGCAGGTG--------------CC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................GTAAGTAGAC------A--------GAAAGCCA-GAC-GGA-TGG--------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................A--------GAAAGCCA-GAC-GGA-TGG--------------GATTAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................AAATCTGAGCGCAGGTG--------------CCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
...............................................................................................................................................................................................................................................................................................................................GATAACAACCG-CATAC--GGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................GTTCGTGAGCGGAT-------------------------------------------------------------------------------------------------T---------G---------------------------------------------------------------C-----------------------------------------------------------------------------------CTTC-TG..........................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
......................GACGATATTCTTTTGGGCACCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................CTTCAAATGGGTAAGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................TATT-TGATTATTTCGAGCAACCTGC--------GCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GATATTCTTTTGGGCACCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................AAGCCA-GAC-GGA-TGG--------------GAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ACGATATTCTTTTGGGCACCCGTCTTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..............................TCTTTTGGGCACCCGTCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TTTGGGCACCCGTCTTCAAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CAAGACGATATTCTTTTGGGCAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................TATTTCGAGCAACCTGC--------GCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...................................................................................................................................................................................TTC--ACCATAAATCCGAAAC-----------------GA------CGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................CA-GAC-GGA-TGG--------------GATTACAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................TTCGTGAGCGGAT-------------------------------------------------------------------------------------------------T---------G---------------------------------------------------------------C-----------------------------------------------------------------------------------CTT..............................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................AGCAACCTGC--------GCTTGATAACAACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................TCTGAGCGCAGGTG--------------CCATTAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................GGTAG---ACAAATCTGAGCGCAGGTG--------------CC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
......................GACGATATTCTTTTGGGCACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................AAATGGGTAAGTAGAC------A--------GAAAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................GACGATATTCTTTTGGGCAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------G---------------------------------------------------------------C-----------------------------------------------------------------------------------CTTC-TGTT------------GTGGAA----------------------------------------------------------CCCTAT-------------------------------------------------------------------------------------------------------------------------------------G2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...............................................................................................................................................................................................................................................................................................GATTATTTCGAGCAACCTGC--------GCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................................................C------A--------GAAAGCCA-GAC-GGA-TGG--------------GA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
...............................................................GAC------A--------GAAAGCCA-GAC-GGA-TGG--------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................GAAAC-----------------GA------CGGTAG---ACAAATCTGAGCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................G-CATAC--GGTTGTGTTCGTGAGCGGAT-------------------------------------------------------------------------------------------------T---------G---------------------------------------------------------------.....................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
......................GACGATATTCTTTTGGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
T---------TCCAGGTCCCAAGACGATATTCTTCTGGGCACCCGTCTTCAAATGGGTAAGTAGAC------A--------GAAACCCA-GAC-GGA-TGG--------------GATTACATAA-CTCGGACGACG-CACGACCTTCGCTGATTTTCATTATCGCACACATACTATAGTTC--ACCATAAATCCGAAAC-----------------GA------CGGTAG---ACAAATCTGAGCGCAGGTG--------------CCATTAAATGAAATTATT-TGATTATTTCGAGCAACCTGC--------GCTTGATA---ACCG-CATGC--GGTTGTGTTCGTGAGCGGAT-------------------------------------------------------------------------------------------------T---------G---------------------------------------------------------------C-----------------------------------------------------------------------------------CTTC-TGTT------------ATGGAA----------------------------------------------------------CCCTAT-------------------------------------------------------------------------------------------------------------------------------------GSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................TACATAA-CTCGGACGACG-............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00200200000000000000
................................................................................................................................................................................................................................................................................................ATTATTTCGAGCAACCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
..............GGTCCCAAGACGATATTCTTCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
...............GTCCCAAGACGATATTCTTCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
...............................................................................................................................................................................................................................................................................................................................................C--GGTTGTGTTCGTGAGCGGAT-------------------------------------------------------------------------------------------------T---------.....................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
................................................TCAAATGGGTAAGTAGAC------A--------GA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000010000
.....................................................................................................................................................................................................AAC-----------------GA------CGGTAG---ACAAATCTGAGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000000000000000
droSec2
T---------TCCAGGTCCCAAGACGATATTCTTCTGGGCACCCGTCTTCAAATGGGTAAGTAGAC------A--------GAAACCTA-GAC-GGA-TGG--------------GATTACATAA-CTCGGACGACG-CACGACCTTCGCTGATTTTCATTATCGCACACATACTATAGTTC--ACCATAAATCGGAAAC-----------------GA------CGGTAG---ACAAATCTGAGCGCAGGTG--------------CCATTAAATGAAATTATT-TGATTATTTCGAGCAACCTGC--------GCTTGATA---ACCG-CATGC--GGTTGTGTTCGTGAGCGGAT-------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................CGATATTCTTCTGGGCACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
droYak3
GCT-------TCCAGGTCCCAAGACGATATTCTTCTGGGCTCCCGTTTTCAAGTGGGTAAGTAGGAGA---CA--------GAAAGCCA-GAC-GAA-TGG--------------GATTACATAA-CTCGGACGACG-CACGACCTTCGCTGATTTTCATTATCGCACACATACTATAGTTC--ACCATAAATCCGAAAC-----------------GA------CGGTAG---ACAAATCTGTGCGCAGGTG--------------CCATTAAATGAAATTATT-TGATTATTTCGAGCAACCTGC--------GCTTGATA---ACCG-CATGC--GGTTGTGTTTGTGAGCGGAT-------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................GGTAAGTAGGAGA---CA--------GAAAGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
....................AAGACGATATTCTTCTGGGCTCCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
..................................CTGGGCTCCCGTTTTCAAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
......................GACGATATTCTTCTGGGCTCCCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000100000
......................GACGATATTCTTCTGGGCTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.........................GATATTCTTCTGGGCTCCCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
...............GTCCCAAGACGATATTCTTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
......................GACGATATTCTTCTGGGCTCCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
.......................ACGATATTCTTCTGGGCTCCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
............................ATTCTTCTGGGCTCCCGTTTTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
..................................................................................................................................................................................................................................GGTAG---ACAAATCTGTGCGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
.....................................................................................................................................................................................................................................AG---ACAAATCTGTGCGCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000
.........................GATATTCTTCTGGGCTCCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.50101000000000
droEre2
CTTCT------TCAGGTCCCAAGACCATATTCTTCTGGGGTCCAATCGTGAAATGGGTAAGTTTCG-----------------------------GA-ACT--------------ACTTGCATAA-CCATGA-ACCC-TGCGTCCTTAGCCAATTCCCATTATCACCG---TAC---------------------------------------------------TGATAA---ACAAATCTGTGGGCGCATA---------------------------------------------------------------------------------------------TGGTG-TTTT---ATTAATATTTGTTTAGTTCT---CAGCAAACCTGTTCAAG--------------------------------CCCGCGATAAA----------------TTAGTACGTAT------------------ATGTATGTATGTATATAC------------------------CA----TTTTGCTC---------TCCACGCGCG-AGATTCTGATAACTGA--------ATGATTGTGCGGTTTA----------TGT--------G-----GCTCATGGAA----------------------------------------------------------TA-TTTGAT-----------------------------------AATACTTTTGCTG----TTTTGCCTGGAAGCTTTGGCAACATGCCATTCAGATTTGCAGTC-AATGGGGGGACTTACCCTGTATTATCGGCCCGATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................CTGGGGTCCAATCGTGAAATGGAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000300
...............................CTTCTGGGGTCCAATCGTGAAATGGAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000200
......................................GGTCCAATCGTGAAATGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
.....................................GGGTCCAATCGTGAAATGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
...............................CTTCTGGGGTCCAATCGTGAAATGGAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGATAACTGA--------ATGATTGTGC.................................................................................................................................................................................................................................................2411.0010100000
......................................GGTCCAATCGTGAAATGGAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
................................TTCTGGGGTCCAATCGTGAAATGGAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
.........................CATATTCTTCTGGGGTCCAATCGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTGTGCGGTTTA----------TGT--------G-----G...............................................................................................................................................................................................................2111.0010000010
................................TTCTGGGGTCCAATCGTGAAATGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
..................................CTGGGGTCCAATCGTGAAATGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
.........................CATATTCTTCTGGGGTCCAATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATGCCATTCAGATTTGCA......................................2111.0010000010
.......................................GTCCAATCGTGAAATGGAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.3310000010

Generated: 06/08/2015 at 04:09 PM