ID:

dpe_1389

 Coordinate:

scaffold_3:5090711-5090998 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-0.2 0.0 0.0

Flybase annnotation

exon [dper_GLEANR_4313:4]; CDS [Dper\GL22236-cds]; exon [dper_GLEANR_4313:5]; CDS [Dper\GL22236-cds]; intron [Dper\GL22236-in]

Repeatable elements

NameClassFamilyStrand
A-richLow_complexityLow_complexity+
mature
star
  1. dpe_1389  scaffold_3:5090880-5090897 +
  2. scaffold_4:4974952-4974969 +
  3. scaffold_9:1910892-1910909 +
  4. scaffold_14:848605-848622 +
  5. scaffold_24:1393767-1393784 -
  6. scaffold_50:93665-93682 +

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGCAACTTCTACTTCTTCTACGCCTTCTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACAAACATTCGATATTTGTTATTAACATACAACAACAACAATCTTTTGCATCTCTTCTTCTGTTTCTTTCCATCCAAACCAAAATCGATATCAACATAAAAAACAAAACTGAACCAAAAACAAAAAACAAAAAAACAAAAAAAAACTGAACCGAACCGAACCGAAAACCGATACCGATCCTTCCTCCAATCACCAATCACCAATCAATACAACATCATCAAATTGTTTATTATGCCCTTCGTTTCTCTCCGCACCCTATGGGGATGCAGCAGCTGCGAGCAGGAAGCAGCAGCAGGCGCATCAGCCACCAACTGGAGTG
***************************************************************************************************************************************************************************************************************************.......................................................((((.((((.........))))))))............**************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M021
embryo
 M042
female body
 V042
embryo
.....................................................................................................................................................................................................................................................................................................GTTTATTATGCCCTTCGTT............................................................................ 19 0 1 2.00 2 2 0 0
.................CTACGCCTTCTACAACGCCAC.............................................................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0
..........................CTACAACGCCAATTGGGGCCAACAGTA............................................................................................................................................................................................................................................................................................................................................... 27 2 1 1.00 1 0 0 1
...........................................................................................................................................................................................................................CCGAACCGAACCGAAAAC....................................................................................................................................................... 18 0 6 0.50 3 3 0 0
..................................................................................................................................................................................................................AAAACTGAACCGAACCGAACCGA........................................................................................................................................................... 23 0 2 0.50 1 1 0 0
.............................................................................................................................................................................................................................GACCCGTACCGCAAACCGA.................................................................................................................................................... 19 3 20 0.05 1 0 1 0

Anti-sense strand reads

TCGTTGAAGATGAAGAAGATGCGGAAGATGTTGCGGTGAACACCGGTTGTCATTTAATAACATTTGTACTGTTTGTAAGCTATAAACAATAATTGTATGTTGTTGTTGTTAGAAAACGTAGAGAAGAAGACAAAGAAAGGTAGGTTTGGTTTTAGCTATAGTTGTATTTTTTGTTTTGACTTGGTTTTTGTTTTTTGTTTTTTTGTTTTTTTTTGACTTGGCTTGGCTTGGCTTTTGGCTATGGCTAGGAAGGAGGTTAGTGGTTAGTGGTTAGTTATGTTGTAGTAGTTTAACAAATAATACGGGAAGCAAAGAGAGGCGTGGGATACCCCTACGTCGTCGACGCTCGTCCTTCGTCGTCGTCCGCGTAGTCGGTGGTTGACCTCAC
****************************************************************************.......................................................((((.((((.........))))))))............*************************************************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V111
male body		 M021
embryo
 V042
embryo
.........................................................................................................................................AGGTAGGTTTGGTTTTAGCTG...................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0
............................................................................................................................................................................................................................................................GAGGTTAGTGGTTAGTGGTTA................................................................................................................... 21 0 1 1.00 1 0 1 0 0
............................................................................................................................................................................................................................................................GAGGTTAGTGGTTAGTGGT..................................................................................................................... 19 0 1 1.00 1 0 1 0 0
.............................................................................................................................GAAGACAAAGAAGGGTAGG.................................................................................................................................................................................................................................................... 19 1 1 1.00 1 1 0 0 0
.....................................................................................................................................................................................................................................................................CGTTCGTGGTTAGTTATG............................................................................................................. 18 2 2 1.00 2 1 0 1 0
.....................................................................................................................................................................................................................................................................CGTTCGTGGTTAGTTATGTTC.......................................................................................................... 21 3 1 1.00 1 1 0 0 0
............................................................................................................................................................................................................................................................................GGTTAGTGGTGTTGTAGTA..................................................................................................... 19 2 6 0.50 3 0 3 0 0
......................................................................................................................................................................................................................................................................GTTCGTGGTTAGTTATGGT........................................................................................................... 19 2 4 0.25 1 1 0 0 0
.....................................................................................................................................................................................................................................................................CGTTCGTGGTTAGTTATGGT........................................................................................................... 20 3 12 0.17 2 2 0 0 0
.....................................................................................................................................................................................................................................................................CGTTCGTGGTTAGTTATGG............................................................................................................ 19 3 20 0.10 2 2 0 0 0
......................................................................................................................................................................................................................................................................GTTCGTGGTTAGTTATGGTC.......................................................................................................... 20 3 17 0.06 1 1 0 0 0
.........................................................................................................................................ACGTAGTTTTGGTTTTAG......................................................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_3:5090661-5091048 + dpe_1389 AGC---------AACTTC----TACTTCTTCTACGCCTTCTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACAAACATTCGATATTTG-TTATTAACATACAACAACAACAATCTTTTGCATCT-CTTCTT---CTGTTTC------TTT-----------------------------------CCA-------TCC-----------------------------A---AACCAA-----------------------------------------------------------------------------------------------------------------AATCGATATCAACATAAAAAACAAAACT--GAACCAAAAACAAAAAACA-AAA-------------------------------------------------------AAACAAAAAAAAACT---GAACCGAACCGAACCGAAAACCGA------TACCGATCCTTCCTCCAATCACCAATCACCAATCAATACAACATCATCA-AATTGTT-TATTATGCCCTTC-GT----TTCTCTC-CGCA-----------------------------CCCTAT--------------------------------------------------------------------------GGGGAT-----G------------CAGCAGCTGCG------AGCAGG-------AAGCAGCAGC---------AGGCGC----ATCAGCCACCAACTGGAGTG
dp5 2:22310470-22310872 + AGC---------AACTTC----TACTTCTTCTACGCCTTCTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACAAACATTCGATATTTG-TTATTAACATACAACAACAACAATCTTTTGCATCT-CTTCTT---CTGTTTC------TTT-----------------------------------CCA-------TCC-----------------------------A---AACCAA-----------------------------------------------------------------------------------------------------------------AATCGATATCAACATAAAAAACAAAACT--GAACCAAAAACAAAAAACA-AA--------------------------------------------CAAAAAAAAA--AAACAAAAAAAAACT---GAACCGAACCGAACCGAAAACCGATACCGATACCGATCCTTCCTCCAATCACCAATCACCAATCAATACAACATCATCA-AATTGTT-TATTATGCCCTTC-GT----TTCTCTC-CGCA-----------------------------CCCTAT--------------------------------------------------------------------------GGGGAT-----G------------CAGCAGCTGCG------AGCAGG-------AAGCAGCAGC---------AGGCGC----ATCAGCCACCAACTGGAGTG
droWil2 scf2_1100000004909:3419715-3419928 + AGAAACAACAACTGCAAGAAGCATTTGCAACTGCAACAACAACAGC-CAACATGTGA--------------------------------------------------------ATTTGCATTAATATTTTGTGTGG-GTTTTTGTTGTTCTAA------TTT---T-TTTTTTTTTT--------------------TTT-------TGG-----------------------------T---TGTTGT-----------------------------------------------------------------------------------------------------------------ATTGGATACCAAAACAAAACGCTAAAAC--AAAATAAAAAGTAAAAAT-AAAAAAAAAT----------------------------------------------------CTAAAGGAAAAAGTGAAAACAAGCTGAGGGGAAAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13047:2005053-2005464 - dvi_15225 TGGTACTGCTACTACTTC----TTCTTCTTCTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGAC-AA-ATTCGATAATTGATTATTAACATAAAACAACAACAAT---TTGCATCTTCTTCTTTTTCT------------TTCTTT-TCTTTTTTCTTTACGCATTTCTTTTATGTTACACGGAACATCGTT------------ACACACACGCG---T-AC-------AACCAC-AAC-----------------------------------CACAAA---C-A-----------CACACACACACCAACACACCT---GCC----------------------------AACACAAA---CAACACTGTGCAATAACAACGTACAACA----------------------------------------------------------A----------------ACG------------------------------------------AAC-----------------------------A-AC-ATTTGTTTTATTTTGCAATT---------TGTTTT-CGTTTCCT-------------------------CTCTCTTCAA-------------ATGTCTTT---------TGTGCCTGCATTTCC--TGATTTTTGT--------------TGG-----ACG------------C---CGCAGTG------AGCAAA-------AGGCAGCGCC---------AGTTG---------GCCAC------GAGC-
droMoj3 scaffold_6540:22885519-22885963 + TGGTACTGCTACTACTTC----TTCTTCTTCTACGCCTACCACAACGCCGCTTGTGGTCAACAGTAAATTATTGTAAACATGAC-AA-ATTCGATAATTGATTATTAACATAAAACAACAACAAT---TTGCATCT-TCTTTTTTTCTT-TTCTTTTTTTTTCTTTTTTTTTTTTCTTTACGCATTTCTTTTATGTTACACGGAACATCGCAACACTCGCACACACACACATGCGCACAATT-------GCCCAC--GCACACA--------------------------CATCCATCAT--------------------------------------------------------------CATCATCATCAACATGAACAACAACTGT--GCAATAACAACGAACAAC----------------------------------------------AACAAACAACAAAA----------------ACG------------------------------------------AAC-----------------------------A-AT-ATTTGTTTTATTTTGCAATT---------TGTTTT-CGTTTT-T-------------------------CTCTCTTCAA-------------C-----ATTTACATATGAATG---------CC--TGATCTTTGT--------------TGG-----ACG------------C---TGCAGTGGGC------AAA-------AAGGAGCGTC---------AATCA---------GCCACGAATCAAGTCG
droGri2 scaffold_14906:8855488-8855907 - TGGTACTGCTACTACTTCTA-CTTCTTCTACTACGCCTACTACAACGCCCCTCGGGGCCAACAGTAAATTATTGTAAACATGAT-AA-ATTCGATAATTGATTATTAACATAAAACAACAACAAT---TTGCATCTTCTTTTTTTTCTT-TTCTTT---TTT-----CCTTTTTTTTTTACGCATTTCTTTTATGTTACA-------ACG-----------------------CA---C-AC-------AACAAC-AAC---------------------------------------AA---C-AACCAATCAACAA------ACAAACTAACAAAC------------------------------------------------------------------------------------------------------------------------------------AAACTAAACAAAACAAACG-----AA-----------------------ACG---------AAC-----------------------------A-AC-ATTTGTTTTATTTT-----T---------TGTTATCCGTTTT-TCTTCCAAACTTCTGCTGTGCGTTTGCCGCAC-A--CTCCTCCCTCTCTCTGTCTCTCTATATATATATGTCTGTATGTCCT-TAATTTCT---------------GTGGA----ACGGAAC-----GACG---AGCAGTG------AGCAAAAGGCAGTCGGCGAC------------------------------------------
droAna3 scaffold_13340:16228553-16228921 + dan_3124 TGGTACTGCTACTACTTCTT-CTTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TTT-----------------------------------ACA-------CGA-----------------------------ACC-------AACAAA-AAA---AA--------------------------AT-----------------------------------------------------------------------------------------------------------------------CAAAAAATATCCAAAAAAAACACCCAACAAACATCACAACCAACAAA-------CAACA----------------ACA-----AC-----C--------AA--CTTCTACAAA----TCCTCC-----------------------------A-CCAAATTGTTTTATTTTGCCATTCCGT-TCTTTATCTC-CGTCTC-T-------------------------CCGCGC----------------------------------------------------------------ACTCCG---GACGGATT----------------------ACAGCG------GGCAAA-------AGGCAACAA--TCA-CA-CAACCAAAACCAAAAC---CCAACTGGAACG
droBip1 scf7180000396708:3814031-3814420 - TGGTACTGCTACTACTTCTT-CTTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TTT-----------------------------------ACA--------CG---------------------------------------AACCAT-AAAAAAAAATAATGATAATATTATTAATAATATTATTAAAACAA------------------------------CAACAACCGACACCCAC-------------AA---------------------------------------------------------------------------------------------CAA-------CATCA----------------ACC-----AA-C---C--------AA--CTTCTACAAA----TCCTCC-----------------------------A-TC-AATTGTTTTATTTTGCCATTCCGT-TCTTTATCTC-GA-------------------------------AC-----C--------------------------------------CGCATTCCCTATAACTCCC--GGCATG---GATTACGGATT-----------------A---AACAGCGGGAACGGGCAAA-------AGGCAACTAC---------AATCAC----AAAAC---CCAACTGGAACG
droKik1 scf7180000302639:1061397-1061758 - TGGTACTGCTACTACTAC----TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACAAA-ATTCGATAATT---TATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTT--TCTTTTTC------TTT-----------------------------------GCA-------TCG-----------------------AA---AATC-------AACCAAAAACACGAA----------TATTCCAACCA-----ATTCCACCAA---CCACC---------------------------------ACCAACAA-CTACAACCACAA---------------------------------------------------------------------------------------------CAA-------CA-------------------AC---------------------------------AA---------CT-----------------------------A-CC-AATTGCTTTATTTTGCCATTCCGTTTC-TTGTCTC-CGTCTCGT-------------------------CCCGTTTC-----------------------------------------------------------CGCATTC-AATTTACGGATTTAATGC---------AGC---AGCGGCGGCAACGGGCAGG-------AAGCAGCAAC---------AACAAC----AACAC---CCAACTGGAGTG
droFic1 scf7180000452523:995882-996235 + TGGTACTGCTACTACTTC----TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TTT-----------------------------------GCA-------TCA-----------------------------ATC-------AACCAA-AACACGAA----------A---------------ATTCCAC-AACAAC-ACC------------------------ATCACCACCTCCA----------------A---------------------------------------------------------------------------------------------CAA-------CAACG----------------ACA------------------------------ACAAC----TCCTCC-----------------------------A-CC-AATTGTTTTATTTTGCCATTCCGT-TCTTTGTCTC-CGTCTCGT-------------------------C-CTGAAT-----------------------------------------------------------TGCACTC-AAACTCTGGACTTAACGCAA------CACC---AGCAGCGGCCAAGGGCAAG-------AGGCAGC---------------CAC----AACAG---TCAACTGGAGCG
droEle1 scf7180000491080:1397298-1397681 + TGGTACTGCTACTACTTC----TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TTT-----------------------------------ACA-------TCG-----------------------------ATC-------AACCGA-AACACGAA--------------------------ATTCCAC-AACAC----C--ACA-------------------ACCAC----------------------------------------------------------AAAACAACCAACAAC-CAAATCAAAT--------------------------CAACCAACCAA-------CAACA----------------ACG-----AC-----C-----------------AAAAC-------TCC-----------------------------A-CC-AATTGTTTTATTTTGCCATTCCGT-TCTTTGTCTC-CGTTTCGT-------------------------CCCTGTTC-----------------------------------------------------------CGCATTC-AAATCACGGATTAAACGCAACAACAACAGC---AGCAGCGGCCAAGGGCAAA-------CGACAAC---------------CAC----AACAC---CCAACTGGAGCG
droRho1 scf7180000758667:25330-25673 + TGGTACTGCTACTACTTC----TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TTT-----------------------------------GCA-------TCG-----------------------------ATC-------AACCAA-AACACGAA--------------------------ATTCCAC-AACAA----C---------------------------------ACCA----------------A---------------------------------------------------------------------------------------------CAA-------CAACA----------------ACG-----AC-----------------------AAAAC----TCCTCC-----------------------------A-CC-AATTGTTTTATTTTGCCATTCCGT-TCTTTGTCTC-CGTTTCGT-------------------------CCCTGTCC-----------------------------------------------------------CGCATTC-AAACCATGGATATAACGCGA------CAGC---AGCAGCGGCCAAGGGCAGG-------AGGCCAC---------------CAC----AACAC---CCAACTGGAGCG
droBia1 scf7180000302136:1223732-1224102 + TGGTACTGCTACTACTTC----TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TTT-----------------------------------GCA-------TCG-----------------------------ATC-------AACCAA-AACACGAA--------------------------ATTCCAC-AATAC----C--ACC-------------------ACCACCACCTCCA----------------A---------------------------------------------------------------------------------------------CAA-------CAACT----------------ACG-----AC------------------------AAAC----TCCACC-----------------------------A-CC-AATTGTTTTAT-TTGCCATTCCGT-TC-TTGTCTC-CGTTTCGT-------------------------CCCTGTTC-----------------------------------------------------------CGCATTC-AAATCACGGATTTATTGCAA------CACCAGCAGCAGCGGCCAAGGGCAAG-------AGGCAAGCA--CCA-CAACAGCAGCAA-CAACAC---CCAACTGGAGCG
droTak1 scf7180000415170:103784-104161 - TGGTACTGCTACTACTTC----TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TTT-----------------------------------GCA-------TCG-----------------------------ATCG------AACCAAAAACACGAA--------------------------ATTCCACCAA---C-ACC---------------------------------ACCTACAACCTACAAC------------------------------T-T--GA--------------------------------------------------------------AA-------CAACA----------------ACG-----AA-----------------------ACTAC----TCCTCC-----------------------------A-CC-AATTGTTTTAT-TTGCCATTCCGT-TC-TTGTCTC-CGTTTCGT-------------------------CCCTGTTC-----------------------------------------------------------CGCATTCCGCATCATGGATTTAACGCTA------CACC---AACAGCGGCCAAGGGCAAG-------AGGCAACAACATCAACAACAACCACAA-CAACAC---CCAACTGGAGCG
droEug1 scf7180000409797:1914416-1914769 - TGGTACTGCTACTACTTC----TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTT-TTC------TTT-----------------------------------GCA-------TCG-----------------------------ATC-------AACCAA-AACACGAA--------------------------ATTCCAC-AACAC----C--ACC-------------------ACCACCACCACC--------------------------------------------------------------------------------------------------------------------------AACA----------------ACG-----AT-----------------------AAAAC----TCCTCC-----------------------------A-CC-AATTGTTTTATTTTGCCATTCCGT-TC-TTGTCTC-CGTTTCGT-------------------------CCCTGTTC-----------------------------------------------------------CGCATTC-AAATCATGGATTTAACTCAA------CATC---AGCAGCGGCCAAGGGCAAG-------AGGCAACCAC---------AACCAC----AGCAC---CCAATTGGAGCG
dm3 chr3R:11624131-11624486 + TGGTACTGCTACTACTTC----TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TTT-----------------------------------GCA-------TCG-----------------------------ATC-------AACCAA-AACACGAA--------------------------ATTCCACCAA---C-ACC--ATCAACAA------A---------CACCACCACCA----------------A---------------------------------------------------------------------------------------------CAA-------CAACA----------------ACG-----AA------------------------AAAC-------CCC-----------------------------A-CC-AATTGTTTTATTTTGCCATTCCGT-TC-TTGTCTC-CGTTTCGT-------------------------CCCCGTTC-----------------------------------------------------------CGCATCC-AAATCACGGACTTGACGCAA------CATC---AGCAGCGGCCAGGGGCAAG-------CGGCAAC---------------CAC----AACAC---CCAACTGGAGCG
droSim2 3r:9621866-9622227 - dsi_2821 TGGTACTGCTACTACTTC----TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTTTTTTTC------TTT-----------------------------------GCA-------TCG-----------------------------ATC-------AACCAA-AACACGAA--------------------------ATTCCACCAA---C-ACC--ATCAACAA------ACACCACCACAACC---ACCA----------------A---------------------------------------------------------------------------------------------CAA-------CAACA----------------ACG-----AA------------------------AAAC-------CCC-----------------------------A-CC-AATTGTTTTATTTTGCCATTCCGT-TC-TTGTCTC-CGTTTCGT-------------------------CCCTGTTC-----------------------------------------------------------CGCATCC-AAATCACGGACTTGACGCAA------CACC---AGCAGCGGCCAGGGGCAAG-------CGGCAAC---------------CAC----AACAC---CCAACTGGAGCG
droSec2 scaffold_0:10329802-10330169 - TGGTACTGCTACTACTTC----TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TTT-----------------------------------GCA-------TCG-----------------------------ATC-------AACCAA-AACACGAA--------------------------ATTCCACCAA---C-ACC--ATCAACAA------ACACCACCACCACCACCACCAAC-------------AA---------------------------------------------------------------------------------------------CAA-------CAACA----------------ACG-----AA------------------------AAAC-------CCC-----------------------------A-CC-AATTGTTTTATTTTGCCATTCCGT-TC-TTGTCTC-CGTTTCGT-------------------------CCCCGTTC-----------------------------------------------------------CGCATCC-AAATCACGGACTTGACGCAA------CACC---AGCAGCGGCCAGGGGCAAG-------CGGCAAC---------------CAC----AACAC---CCAACTGGAGCG
droYak3 3R:14813229-14813580 - TGGTACTGCTACTACTTC----TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TTT-----------------------------------GCA-------TCG-----------------------------ATC-------AACCAA-AACACGAA--------------------------AATCCAC-AACAC----C--ATC-------------------AACACCACCACCA----------------A---------------------------------------------------------------------------------------------CAA-------CAACA----------------ACG-----AA-----------------------AAAAC-------TCC-----------------------------A-CC-AATTGTTTTATTTTGCCATTCCGT-TC-TTGTCTC-CGTTTCGT-------------------------CCCTGTTC-----------------------------------------------------------CGCAAAC-AATTCACGGATCTATCGCTA------CACC---AGCAGCGGCCAAGGGCAAG-------CGGCAAC---------------CAC----AACAC---CCAATTGGAGCG
droEre2 scaffold_4770:11146363-11146708 + TGGTACTGCTACTACTTC----TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAT-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTT---CTTTTTC------TTT-----------------------------------ACA-------TCG-----------------------------ATC-------AACCAA-AACACGAA--------------------------ATTCCAC-AACAC----C--ATC-------------------AACACCACCACCA----------------------------------------------------------------------------------------------------------------A-------CAACA----------------ACG-----AA-----------------------AAAAC-------TCC-----------------------------A-CC-AATTGTTTTATTTTGCCATTCCGT-TC-TTGTCTC-CGTTTCGT-------------------------CCCTGTTC-----------------------------------------------------------CGCATCC-AATTCACGGATCTAACGCTA------CATC---AGCAGCAGCCAAGGGCAAG-------CGGCAAC---------------CAC----AACAC---CCAACTGGAGCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
AGC---------AACTTC----TACTTCTTCTACGCCTTCTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACAAACATTCGATATTTG-TTATTAACATACAACAACAACAATCTTTTGCATCT-CTTCTT---CTGTTTC------TTT-----------------------------------CCA-------TCC-----------------------------A---AACCAA-----------------------------------------------------------------------------------------------------------------AATCGATATCAACATAAAAAACAAAACT--GAACCAAAAACAAAAAACA-AAA-------------------------------------------------------AAACAAAAAAAAACT---GAACCGAACCGAACCGAAAACCGA------TACCGATCCTTCCTCCAATCACCAATCACCAATCAATACAACATCATCA-AATTGTT-TATTATGCCCTTC-GT----TTCTCTC-CGCA-----------------------------CCCTAT--------------------------------------------------------------------------GGGGAT-----G------------CAGCAGCTGCG------AGCAGG-------AAGCAGCAGC---------AGGCGC----ATCAGCCACCAACTGGAGTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT-TATTATGCCCTTC-GT----T...............................................................................................................................................................................................................................1912.002200000
..............................CTACGCCTTCTACAACGCCAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAACCGAACCGAAAAC.......................................................................................................................................................................................................................................................................................................................1860.503300000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACT---GAACCGAACCGAACCGA...........................................................................................................................................................................................................................................................................................................................2320.501100000
dp5
AGC---------AACTTC----TACTTCTTCTACGCCTTCTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACAAACATTCGATATTTG-TTATTAACATACAACAACAACAATCTTTTGCATCT-CTTCTT---CTGTTTC------TTT-----------------------------------CCA-------TCC-----------------------------A---AACCAA-----------------------------------------------------------------------------------------------------------------AATCGATATCAACATAAAAAACAAAACT--GAACCAAAAACAAAAAACA-AA--------------------------------------------CAAAAAAAAA--AAACAAAAAAAAACT---GAACCGAACCGAACCGAAAACCGATACCGATACCGATCCTTCCTCCAATCACCAATCACCAATCAATACAACATCATCA-AATTGTT-TATTATGCCCTTC-GT----TTCTCTC-CGCA-----------------------------CCCTAT--------------------------------------------------------------------------GGGGAT-----G------------CAGCAGCTGCG------AGCAGG-------AAGCAGCAGC---------AGGCGC----ATCAGCCACCAACTGGAGTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................TCTTTTGCATCT-CTTCTT---CTGTTTC------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGG-------AAGCAGCAGC---------AGGCG.........................1911.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG------AGCAGG-------AAGCAGCAGC---------AGGCGC----....................2411.0010000000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGATACCGATACCGATCCTT...................................................................................................................................................................................................................................................................................................2211.0010000100000
................................................................................................................................TTGCATCT-CTTCTT---CTGTTTC------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------AGGCGC----ATCAGCCACCAACTGGA...2411.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---------AGGCGC----ATCAGCCACCAACTGGA...2611.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCGAACCGAACCGAAAACCGATACC................................................................................................................................................................................................................................................................................................................2811.0010001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACT---GAACCGAACCGAACCGA...........................................................................................................................................................................................................................................................................................................................2160.3320200000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGATACCGATACCGAT.......................................................................................................................................................................................................................................................................................................1960.1710100000000
droWil2
AGAAACAACAACTGCAAGAAGCATTTGCAACTGCAACAACAACAGC-CAACATGTGA--------------------------------------------------------ATTTGCATTAATATTTTGTGTGG-GTTTTTGTTGTTCTAA------TTT---T-TTTTTTTTTT--------------------TTT-------TGG-----------------------------T---TGTTGT-----------------------------------------------------------------------------------------------------------------ATTGGATACCAAAACAAAACGCTAAAAC--AAAATAAAAAGTAAAAAT-AAAAAAAAAT----------------------------------------------------CTAAAGGAAAAAGTGAAAACAAGCTGAGGGGAAAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................TGTGTGG-GTTTTTGTTGTTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................T----------------------------------------------------CTAAAGGAAAAAGTGAAAA........................................................................................................................................................................................................................................................................................................................................2011.00100100
...AACAACAACTGCAAGAAGCATTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGAAAACAAGCTGAGGGGA...........................................................................................................................................................................................................................................................................................................................2111.00101000
.........................TGCAACTGCAACAACAACAGC-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.10202000
droVir3
TGGTACTGCTACTACTTC----TTCTTCTTCTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGAC-AA-ATTCGATAATTGATTATTAACATAAAACAACAACAAT---TTGCATCTTCTTCTTTTTCT------------TTCTTT-TCTTTTTTCTTTACGCATTTCTTTTATGTTACACGGAACATCGTT------------ACACACACGCG---T-AC-------AACCAC-AAC-----------------------------------CACAAA---C-A-----------CACACACACACCAACACACCT---GCC----------------------------AACACAAA---CAACACTGTGCAATAACAACGTACAACA----------------------------------------------------------A----------------ACG------------------------------------------AAC-----------------------------A-AC-ATTTGTTTTATTTTGCAATT---------TGTTTT-CGTTTCCT-------------------------CTCTCTTCAA-------------ATGTCTTT---------TGTGCCTGCATTTCC--TGATTTTTGT--------------TGG-----ACG------------C---CGCAGTG------AGCAAA-------AGGCAGCGCC---------AGTTG---------GCCAC------GAGC-SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAA-------AGGCAGCGCC---------AGTT..........................2011.001000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCC--TGATTTTTGT--------------TGG-----ACG------------C---C..........................................................................2311.001000000000000000000000000000100000000000000000000000000000000000
.........TACTACTTC----TTCTTCTTCTACGCCTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000010000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTT-CGTTTCCT-------------------------CTCTCTTCA..............................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCC--TGATTTTTGT--------------TGG-----ACG------------C---C..........................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................AACACTGTGCAATAACAACGT...............................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGT--------------TGG-----ACG------------C---CGCAA......................................................................1811.001000000000000000000000000010000000000000000000000000000000000000
...................................................................................................................................................................TTT-TCTTTTTTCTTTACGCAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................CACACACACACCAACACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.331000000000000001000000000000000000000000000000000000000000000000
droMoj3
TGGTACTGCTACTACTTC----TTCTTCTTCTACGCCTACCACAACGCCGCTTGTGGTCAACAGTAAATTATTGTAAACATGAC-AA-ATTCGATAATTGATTATTAACATAAAACAACAACAAT---TTGCATCT-TCTTTTTTTCTT-TTCTTTTTTTTTCTTTTTTTTTTTTCTTTACGCATTTCTTTTATGTTACACGGAACATCGCAACACTCGCACACACACACATGCGCACAATT-------GCCCAC--GCACACA--------------------------CATCCATCAT--------------------------------------------------------------CATCATCATCAACATGAACAACAACTGT--GCAATAACAACGAACAAC----------------------------------------------AACAAACAACAAAA----------------ACG------------------------------------------AAC-----------------------------A-AT-ATTTGTTTTATTTTGCAATT---------TGTTTT-CGTTTT-T-------------------------CTCTCTTCAA-------------C-----ATTTACATATGAATG---------CC--TGATCTTTGT--------------TGG-----ACG------------C---TGCAGTGGGC------AAA-------AAGGAGCGTC---------AATCA---------GCCACGAATCAAGTCGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC------AAA-------AAGGAGCGTC---------AATCA---------GCCACG..........2611.001000001
....................................................................................................................................................................................................................................................................................................................................................................................................................AACAAC----------------------------------------------AACAAACAACAAAA----------------AC............................................................................................................................................................................................................................................................................................................................................2231.003300000
...........................................................................................................................................................................................................................CACACACACACATGCGCACAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100
.............................TCTACGCCTACCACAACGCCGCTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................CGAACAAC----------------------------------------------AACAAACAACAAAA----------------..............................................................................................................................................................................................................................................................................................................................................2211.001100000
.............................TCTACGCCTACCACAACGCCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.............................TCTACGCCTACCACAACGCCGCTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTTATTTTGCAATT---------TGTTTT-CGT.....................................................................................................................................................................................................................2611.001000001
...................................................................................C-AA-ATTCGATAATTGATTAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
..........................................................................................................................................................................................................................................................................................................................................................................................................AATAACAACGAACAAC----------------------------------------------AAC.........................................................................................................................................................................................................................................................................................................................................................................1920.501000010
...........................................................................................................................................................TTTTTTTCTTTTTTTTTTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
....................................................................................................................................................................................................................................................................................................................................................................................................................AACAAC----------------------------------------------AACAAACAACAAA...............................................................................................................................................................................................................................................................................................................................................................19200.051100000
droGri2
TGGTACTGCTACTACTTCTA-CTTCTTCTACTACGCCTACTACAACGCCCCTCGGGGCCAACAGTAAATTATTGTAAACATGAT-AA-ATTCGATAATTGATTATTAACATAAAACAACAACAAT---TTGCATCTTCTTTTTTTTCTT-TTCTTT---TTT-----CCTTTTTTTTTTACGCATTTCTTTTATGTTACA-------ACG-----------------------CA---C-AC-------AACAAC-AAC---------------------------------------AA---C-AACCAATCAACAA------ACAAACTAACAAAC------------------------------------------------------------------------------------------------------------------------------------AAACTAAACAAAACAAACG-----AA-----------------------ACG---------AAC-----------------------------A-AC-ATTTGTTTTATTTT-----T---------TGTTATCCGTTTT-TCTTCCAAACTTCTGCTGTGCGTTTGCCGCAC-A--CTCCTCCCTCTCTCTGTCTCTCTATATATATATGTCTGTATGTCCT-TAATTTCT---------------GTGGA----ACGGAAC-----GACG---AGCAGTG------AGCAAAAGGCAGTCGGCGAC------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
TGGTACTGCTACTACTTCTT-CTTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TTT-----------------------------------ACA-------CGA-----------------------------ACC-------AACAAA-AAA---AA--------------------------AT-----------------------------------------------------------------------------------------------------------------------CAAAAAATATCCAAAAAAAACACCCAACAAACATCACAACCAACAAA-------CAACA----------------ACA-----AC-----C--------AA--CTTCTACAAA----TCCTCC-----------------------------A-CCAAATTGTTTTATTTTGCCATTCCGT-TCTTTATCTC-CGTCTC-T-------------------------CCGCGC----------------------------------------------------------------ACTCCG---GACGGATT----------------------ACAGCG------GGCAAA-------AGGCAACAA--TCA-CA-CAACCAAAACCAAAAC---CCAACTGGAACGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................CTTCTACTACGCCTACTACAACGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................AAACACCCAACAAACATCACAACC................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-----AC-----C--------AA--CTTCTACAAA----TC..................................................................................................................................................................................................................................................................................................1911.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAAA----TCCTCC-----------------------------A-CCAAATT........................................................................................................................................................................................................................................................2111.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------AGGCAACAA--TCA-CA-CAACC..........................2211.001010000
...........................CTACTACGCCTACTACAACGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTACAAA----TCCTCC-----------------------------A-CCAAATT........................................................................................................................................................................................................................................................2211.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCAACAAA-------CAACA----------------ACA-----C.....................................................................................................................................................................................................................................................................................................................................1940.251010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAACACCCAACAAAA.........................................................................................................................................................................................................................................................................................................................................................................................20100.101010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAACACCCAACAC...........................................................................................................................................................................................................................................................................................................................................................................................18140.071010000
droBip1
TGGTACTGCTACTACTTCTT-CTTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TTT-----------------------------------ACA--------CG---------------------------------------AACCAT-AAAAAAAAATAATGATAATATTATTAATAATATTATTAAAACAA------------------------------CAACAACCGACACCCAC-------------AA---------------------------------------------------------------------------------------------CAA-------CATCA----------------ACC-----AA-C---C--------AA--CTTCTACAAA----TCCTCC-----------------------------A-TC-AATTGTTTTATTTTGCCATTCCGT-TCTTTATCTC-GA-------------------------------AC-----C--------------------------------------CGCATTCCCTATAACTCCC--GGCATG---GATTACGGATT-----------------A---AACAGCGGGAACGGGCAAA-------AGGCAACTAC---------AATCAC----AAAAC---CCAACTGGAACGSizeHit CountTotal NormTotal
No Reads
droKik1
TGGTACTGCTACTACTAC----TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACAAA-ATTCGATAATT---TATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTT--TCTTTTTC------TTT-----------------------------------GCA-------TCG-----------------------AA---AATC-------AACCAAAAACACGAA----------TATTCCAACCA-----ATTCCACCAA---CCACC---------------------------------ACCAACAA-CTACAACCACAA---------------------------------------------------------------------------------------------CAA-------CA-------------------AC---------------------------------AA---------CT-----------------------------A-CC-AATTGCTTTATTTTGCCATTCCGTTTC-TTGTCTC-CGTCTCGT-------------------------CCCGTTTC-----------------------------------------------------------CGCATTC-AATTTACGGATTTAATGC---------AGC---AGCGGCGGCAACGGGCAGG-------AAGCAGCAAC---------AACAAC----AACAC---CCAACTGGAGTGSizeHit CountTotal NormTotal
No Reads
droFic1
TGGTACTGCTACTACTTC----TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TTT-----------------------------------GCA-------TCA-----------------------------ATC-------AACCAA-AACACGAA----------A---------------ATTCCAC-AACAAC-ACC------------------------ATCACCACCTCCA----------------A---------------------------------------------------------------------------------------------CAA-------CAACG----------------ACA------------------------------ACAAC----TCCTCC-----------------------------A-CC-AATTGTTTTATTTTGCCATTCCGT-TCTTTGTCTC-CGTCTCGT-------------------------C-CTGAAT-----------------------------------------------------------TGCACTC-AAACTCTGGACTTAACGCAA------CACC---AGCAGCGGCCAAGGGCAAG-------AGGCAGC---------------CAC----AACAG---TCAACTGGAGCGSizeHit CountTotal NormTotal
No Reads
droEle1
TGGTACTGCTACTACTTC----TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TTT-----------------------------------ACA-------TCG-----------------------------ATC-------AACCGA-AACACGAA--------------------------ATTCCAC-AACAC----C--ACA-------------------ACCAC----------------------------------------------------------AAAACAACCAACAAC-CAAATCAAAT--------------------------CAACCAACCAA-------CAACA----------------ACG-----AC-----C-----------------AAAAC-------TCC-----------------------------A-CC-AATTGTTTTATTTTGCCATTCCGT-TCTTTGTCTC-CGTTTCGT-------------------------CCCTGTTC-----------------------------------------------------------CGCATTC-AAATCACGGATTAAACGCAACAACAACAGC---AGCAGCGGCCAAGGGCAAA-------CGACAAC---------------CAC----AACAC---CCAACTGGAGCGSizeHit CountTotal NormTotal
No Reads
droRho1
TGGTACTGCTACTACTTC----TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TTT-----------------------------------GCA-------TCG-----------------------------ATC-------AACCAA-AACACGAA--------------------------ATTCCAC-AACAA----C---------------------------------ACCA----------------A---------------------------------------------------------------------------------------------CAA-------CAACA----------------ACG-----AC-----------------------AAAAC----TCCTCC-----------------------------A-CC-AATTGTTTTATTTTGCCATTCCGT-TCTTTGTCTC-CGTTTCGT-------------------------CCCTGTCC-----------------------------------------------------------CGCATTC-AAACCATGGATATAACGCGA------CAGC---AGCAGCGGCCAAGGGCAGG-------AGGCCAC---------------CAC----AACAC---CCAACTGGAGCGSizeHit CountTotal NormTotal
No Reads
droBia1
TGGTACTGCTACTACTTC----TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TTT-----------------------------------GCA-------TCG-----------------------------ATC-------AACCAA-AACACGAA--------------------------ATTCCAC-AATAC----C--ACC-------------------ACCACCACCTCCA----------------A---------------------------------------------------------------------------------------------CAA-------CAACT----------------ACG-----AC------------------------AAAC----TCCACC-----------------------------A-CC-AATTGTTTTAT-TTGCCATTCCGT-TC-TTGTCTC-CGTTTCGT-------------------------CCCTGTTC-----------------------------------------------------------CGCATTC-AAATCACGGATTTATTGCAA------CACCAGCAGCAGCGGCCAAGGGCAAG-------AGGCAAGCA--CCA-CAACAGCAGCAA-CAACAC---CCAACTGGAGCGSizeHit CountTotal NormTotal
No Reads
droTak1
TGGTACTGCTACTACTTC----TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TTT-----------------------------------GCA-------TCG-----------------------------ATCG------AACCAAAAACACGAA--------------------------ATTCCACCAA---C-ACC---------------------------------ACCTACAACCTACAAC------------------------------T-T--GA--------------------------------------------------------------AA-------CAACA----------------ACG-----AA-----------------------ACTAC----TCCTCC-----------------------------A-CC-AATTGTTTTAT-TTGCCATTCCGT-TC-TTGTCTC-CGTTTCGT-------------------------CCCTGTTC-----------------------------------------------------------CGCATTCCGCATCATGGATTTAACGCTA------CACC---AACAGCGGCCAAGGGCAAG-------AGGCAACAACATCAACAACAACCACAA-CAACAC---CCAACTGGAGCGSizeHit CountTotal NormTotal
No Reads
droEug1
TGGTACTGCTACTACTTC----TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTT-TTC------TTT-----------------------------------GCA-------TCG-----------------------------ATC-------AACCAA-AACACGAA--------------------------ATTCCAC-AACAC----C--ACC-------------------ACCACCACCACC--------------------------------------------------------------------------------------------------------------------------AACA----------------ACG-----AT-----------------------AAAAC----TCCTCC-----------------------------A-CC-AATTGTTTTATTTTGCCATTCCGT-TC-TTGTCTC-CGTTTCGT-------------------------CCCTGTTC-----------------------------------------------------------CGCATTC-AAATCATGGATTTAACTCAA------CATC---AGCAGCGGCCAAGGGCAAG-------AGGCAACCAC---------AACCAC----AGCAC---CCAATTGGAGCGSizeHit CountTotal NormTotal
No Reads
dm3
TGGTACTGCTACTACTTC----TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TTT-----------------------------------GCA-------TCG-----------------------------ATC-------AACCAA-AACACGAA--------------------------ATTCCACCAA---C-ACC--ATCAACAA------A---------CACCACCACCA----------------A---------------------------------------------------------------------------------------------CAA-------CAACA----------------ACG-----AA------------------------AAAC-------CCC-----------------------------A-CC-AATTGTTTTATTTTGCCATTCCGT-TC-TTGTCTC-CGTTTCGT-------------------------CCCCGTTC-----------------------------------------------------------CGCATCC-AAATCACGGACTTGACGCAA------CATC---AGCAGCGGCCAGGGGCAAG-------CGGCAAC---------------CAC----AACAC---CCAACTGGAGCGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCACGGACTTGACGCAA------C.................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................TCTTTTTC------TTT-----------------------------------GCA-------TCG-----------------------------ATC-------A..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTTTATTTTGCCATTCCG.....................................................................................................................................................................................................................................2113.0030000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................ACGCCTACTACAACGCCACTTGTGGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGT-------------------------CCCCGTTC-----------------------------------------------------------CGCATC..............................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGCCAGGGGCAAG-------CGGCAAC---------------...........................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGGACTTGACGCAA------CATC---AGCAG......................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTCCGT-TC-TTGTCTC-CGT.....................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000010000000000000000
................................................................................................................................................TTCTTTTTC------TTT-----------------------------------GCA-------TCG-----------------------------ATC-------AACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTC-CGTTTCGT-------------------------CCCCGTTC-----------------------------------------------------------C...................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGGACTTGACGCAA------CATC---AG.........................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
......TGCTACTACTTC----TTCTTCTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................ATTG-TTATTAACATAAAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TTCTACTACGCCTACTACAACGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAC---------------CAC----AACAC---CCAACT......1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGACTTGACGCAA------CATC---AG.........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCCATTCCGT-TC-TTGTC...........................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTC-CGTTTCGT-------------------------CCCCGTTC-----------------------------------------------------------C...................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
................................................................................................ATTG-TTATTAACATAAAACAACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGGCCAGGGGCAAG-------CGG..............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACGCAA------CATC---AGCAGCGG...................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC----AACAC---CCAACTGGAGC.1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC---AGCAGCGGCCAGGGGCAA.........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------CAC----AACAC---CCAACTGGAGCG2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---AGCAGCGGCCAGGGGCAAG-------CGGCA............................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.............................ACTACGCCTACTACAACGCCACTTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................TTGTAAACATGACGAA-ATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGCCAGGGGCAAG-------CGGCA............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
............................................ACGCCACTTGTGGCCAACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-TC-TTGTCTC-CGTTTCGT-------------------------CC.....................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCC-AAATCACGGACTTGACG...........................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........CTACTTC----TTCTTCTACTACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.............................................................................................................................CTTTTGCATCT-CTTCTTCTTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCATTCCGT-TC-TTGTCTC-CGT.....................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............ACTTC----TTCTTCTACTACGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGT-TC-TTGTCTC-CGTTTCGT-------------------------C......................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................GTGGCCAACAGTAAATTATTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................ACATAAAACAACAACAATCTTTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................TCTTTTTC------TTT-----------------------------------GCA-------TCG-----------------------------ATC-------AACCAA-AA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---AGCAGCGGCCAGGGGCAAG-------CG...............................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACGGACTTGACGCAA------CATC---AGCAGC.....................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCAAC---------------CAC----AACAC---CCAACTGGAGC.2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC-AAATCACGGACTTGACGCAA------CATC---AG.........................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGCCAGGGGCAAG-------CGGC.............................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-CGTTTCGT-------------------------CCCCGTTC-----------------------------------------------------------CG..................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.............................................................................................................................................TTCTTCTTTTTC------TTT-----------------------------------GCA-------TC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
............................TACTACGCCTACTACAACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........CTACTTC----TTCTTCTACTACGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAG-------CGGCAAC---------------CAC----AACAC---CCAACTG.....2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................TCGATAATTG-TTATTAACATAAAACAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGGCAAG-------CGGCAAC---------------CAC----AACAC---C...........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCACGGACTTGACGCAA------CA................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TACTGCTACTACTTC----TTCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................CTTGTGGCCAACAGTAAATTATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGT-TC-TTGTCTC-CGTTC...................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................CACGAA--------------------------ATTCCACCAA---C-ACC--ATCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................TTTTTC------TTT-----------------------------------GCA-------TCG-----------------------------ATC-------AACCAA-AACAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGCCAGGGGCAAG-------CGGCAAC---------------CAC----....................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGCCAGGGGCAAG-------CGGCAAC---------------C..........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGGGGCAAG-------CGGCAAC---------------...........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................TCTTCTTCTTTTTC------TTT-----------------------------------GCA-------T....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................T-----------------------------------GCA-------TCG-----------------------------ATC-------AACCAA-AACACGAA--------------------------A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGACGCAA------CATC---AGCAGCGG...................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------CATC---AGCAGCGGCCAGGGGC...........................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATC---AGCAGCGGCCAGGG.............................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
droSim2
TGGTACTGCTACTACTTC----TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTTTTTTTC------TTT-----------------------------------GCA-------TCG-----------------------------ATC-------AACCAA-AACACGAA--------------------------ATTCCACCAA---C-ACC--ATCAACAA------ACACCACCACAACC---ACCA----------------A---------------------------------------------------------------------------------------------CAA-------CAACA----------------ACG-----AA------------------------AAAC-------CCC-----------------------------A-CC-AATTGTTTTATTTTGCCATTCCGT-TC-TTGTCTC-CGTTTCGT-------------------------CCCTGTTC-----------------------------------------------------------CGCATCC-AAATCACGGACTTGACGCAA------CACC---AGCAGCGGCCAGGGGCAAG-------CGGCAAC---------------CAC----AACAC---CCAACTGGAGCGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........CTACTTC----TTCTTCTACTACGCCTACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200200000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTATTTTGCCATTCCGT-...................................................................................................................................................................................................................................2011.00100000100000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACGGACTTGACGCAA------CACC---...........................................................................2111.00110000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGT-TC-TTGTCTC-CGTTTCGT-------------------------CCC....................................................................................................................................................................................2311.00100100000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGACTTGACGCAA------CACC---AG.........................................................................2111.00110000000000000000
..............................CTACGCCTACTACAACGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-----------------------------------------------------------CGCATCC-AAATCACGGACC................................................................................................2111.00110000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC-----------------------------------------------------------CGCATCC-AAATCACGGACT................................................................................................2211.00110000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCCATTCCGT-TC-TTGTC...........................................................................................................................................................................................................................2111.00100000000001000000
.........................................................................GTAAACATGACGAA-ATTCGATAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACGGACTTGACGCAA------CACC---AGCAG......................................................................2611.00110000000000000000
.................................................................................................................................................................T-----------------------------------GCA-------TCG-----------------------------ATC-------AACCAA-AACAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000100000000000
..GTACTGCTACTACTTC----TTCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACGGACTTGACGCAA------CAC...............................................................................2111.00101000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-----------------------------------------------------------CGCATCC-AAATCACGGACT................................................................................................2111.00101000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTC-CGTTTCGT-------------------------CCCTGTTC-----------------------------------------------------------CGCA................................................................................................................2511.00110000000000000000
droSec2
TGGTACTGCTACTACTTC----TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TTT-----------------------------------GCA-------TCG-----------------------------ATC-------AACCAA-AACACGAA--------------------------ATTCCACCAA---C-ACC--ATCAACAA------ACACCACCACCACCACCACCAAC-------------AA---------------------------------------------------------------------------------------------CAA-------CAACA----------------ACG-----AA------------------------AAAC-------CCC-----------------------------A-CC-AATTGTTTTATTTTGCCATTCCGT-TC-TTGTCTC-CGTTTCGT-------------------------CCCCGTTC-----------------------------------------------------------CGCATCC-AAATCACGGACTTGACGCAA------CACC---AGCAGCGGCCAGGGGCAAG-------CGGCAAC---------------CAC----AACAC---CCAACTGGAGCGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGT-TC-TTGTCTC-CGTTTCGT-------------------------.......................................................................................................................................................................................2112.0020200
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCGT-TC-TTGTCTC-CGTT....................................................................................................................................................................................................................2111.0010001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCC-AAATCACGGACTTGA.............................................................................................2111.0010001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCCATTCCGT-TC-TTGTC...........................................................................................................................................................................................................................2111.0011000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC----AACAC---CCAACTGGAG..1811.0010010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCGT-TC-TTGTCTC-CGTTTC..................................................................................................................................................................................................................2311.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGGCCAGGGGCAAG-------CGG..............................................2111.0010001
droYak3
TGGTACTGCTACTACTTC----TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAA-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTTCTTCTTTTTC------TTT-----------------------------------GCA-------TCG-----------------------------ATC-------AACCAA-AACACGAA--------------------------AATCCAC-AACAC----C--ATC-------------------AACACCACCACCA----------------A---------------------------------------------------------------------------------------------CAA-------CAACA----------------ACG-----AA-----------------------AAAAC-------TCC-----------------------------A-CC-AATTGTTTTATTTTGCCATTCCGT-TC-TTGTCTC-CGTTTCGT-------------------------CCCTGTTC-----------------------------------------------------------CGCAAAC-AATTCACGGATCTATCGCTA------CACC---AGCAGCGGCCAAGGGCAAG-------CGGCAAC---------------CAC----AACAC---CCAATTGGAGCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................CTACTACAACGCCACTTGTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCACGGATCTATCGCTA------CACC---...........................................................................2311.00100000010000
.........................................................................................................................................CTTCTTCTTCTTTTTC------TTT-----------------------------------GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAAGGGCAAG-------CGGCAAC---------------CAC----AAC.................2611.00101000000000
droEre2
TGGTACTGCTACTACTTC----TTCTTCTACTACGCCTACTACAACGCCACTTGTGGCCAACAGTAAATTATTGTAAACATGACGAT-ATTCGATAATTG-TTATTAACATAAAACAACAACAATCTTTTGCATCT-CTTCTT---CTTTTTC------TTT-----------------------------------ACA-------TCG-----------------------------ATC-------AACCAA-AACACGAA--------------------------ATTCCAC-AACAC----C--ATC-------------------AACACCACCACCA----------------------------------------------------------------------------------------------------------------A-------CAACA----------------ACG-----AA-----------------------AAAAC-------TCC-----------------------------A-CC-AATTGTTTTATTTTGCCATTCCGT-TC-TTGTCTC-CGTTTCGT-------------------------CCCTGTTC-----------------------------------------------------------CGCATCC-AATTCACGGATCTAACGCTA------CATC---AGCAGCAGCCAAGGGCAAG-------CGGCAAC---------------CAC----AACAC---CCAACTGGAGCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCAAG-------CGGCAAC---------------CAC----AACAC---C...........2411.0010100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCC-AATTCACGGATCTAACGCTA------CA................................................................................2511.0011000000
..................................GCCTACTACAACGCCACTTGTGGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
.................................................................................................................................................................................................................................................C-------AACCAA-AACACGAA--------------------------ATTCCAC-AACAC----.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000010

Generated: 06/08/2015 at 04:09 PM