ID:

dpe_138

 Coordinate:

scaffold_13:198179-198240 +

 Confidence:

confident

 Class:

Testes-restricted

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-28.2

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AGATCGACCGACGATCTATGGAGGATCCCTGTTTCATACGATTGAAGTACTGATAGAGGATGCTTCTCTATTGGTGTATTCGAAAACCAACAGCAAGCCACCTCTTTCAATACTCCGATCAACCAGTCTGGTATCCCAATATTCTGTGACGAACGCTGGAGG

***********************************....(((((.((((.(((.(((((..((((..((.(((((..........))))).)).))))..))))).))).)))).)))))......************************************ 		Read size # Mismatch Hit Count Total Norm Total V057

head

 M042

female body

 V111

male body		 M021

embryo

 V050

head
.........................................................................................ACAGCAAGCCACCTCTTTCAAT................................................... 22 0 1 23.00 23 6 11 3 3 0
.........................................................................................ACAGCAAGCCACCTCTTTCA..................................................... 20 0 1 6.00 6 3 1 1 0 1
.........................................................................................ACAGCAAGCCACCTCTTTCAA.................................................... 21 0 1 3.00 3 2 1 0 0 0
.........................................................................................ACAGCAAGCCACCTCTTTC...................................................... 19 0 1 1.00 1 1 0 0 0 0
.........................................................................................ACAGCAGGCCACCTCTTTCAAT................................................... 22 1 1 1.00 1 1 0 0 0 0
.........................................................................................ACAGCCAGCCACCTCTTTCAAT................................................... 22 1 1 1.00 1 1 0 0 0 0
..................................................TGATAGAGGATGCTTCTCTATT.......................................................................................... 22 0 1 1.00 1 0 1 0 0 0
..................................................TGATAGAGGATGCTTCTCTCT........................................................................................... 21 1 1 1.00 1 0 0 1 0 0
..................................................TGATAGAGGATGCTTTTCTATTG......................................................................................... 23 1 1 1.00 1 0 0 0 0 1
.........................................................................................ACACCAAGCCACCTCTTCCA..................................................... 20 2 1 1.00 1 1 0 0 0 0
..................................................TGATAGAGGATGCTTCTCTATTGGTGT..................................................................................... 27 0 1 1.00 1 0 0 1 0 0
..................................................TGATAGAGGATGCTTCTCTATTGA........................................................................................ 24 1 1 1.00 1 0 0 1 0 0
..................................................TGATAGAAGATGGTTCTCTATT.......................................................................................... 22 2 1 1.00 1 1 0 0 0 0
..................................................TGATAGAGGATGCTTCTCTATTC......................................................................................... 23 1 1 1.00 1 1 0 0 0 0
.........................................................................................ACAGAAAGCCACCTCTTTCAAT................................................... 22 1 1 1.00 1 1 0 0 0 0
..................................................TGATAGAGGATGCTTCTCTTT........................................................................................... 21 1 1 1.00 1 0 0 1 0 0
..................................................TGATAGAGGATGATTCTCCATTG......................................................................................... 23 2 2 0.50 1 1 0 0 0 0
..................................................TGATAGAGGATGCTTCTTTCT........................................................................................... 21 2 2 0.50 1 0 0 1 0 0
...................................................GATAGAGGATACTTCTCCAATGGT....................................................................................... 24 3 2 0.50 1 1 0 0 0 0
.........................................................................................ACAAGAAGCCACCTCTTTCACT................................................... 22 3 2 0.50 1 1 0 0 0 0
..................................................TGATAGAGGATGCTTCTCCT............................................................................................ 20 2 3 0.33 1 0 0 1 0 0
..................................................TGATAGAGGATGCTTTTTT............................................................................................. 19 2 9 0.11 1 0 0 1 0 0

Anti-sense strand reads

TCTAGCTGGCTGCTAGATACCTCCTAGGGACAAAGTATGCTAACTTCATGACTATCTCCTACGAAGAGATAACCACATAAGCTTTTGGTTGTCGTTCGGTGGAGAAAGTTATGAGGCTAGTTGGTCAGACCATAGGGTTATAAGACACTGCTTGCGACCTCC

************************************....(((((.((((.(((.(((((..((((..((.(((((..........))))).)).))))..))))).))).)))).)))))......*********************************** 		Read size # Mismatch Hit Count Total Norm Total V057

head
.........................................................................................................................TGGTCAGACTGTACGGTTATA.................... 21 3 3 0.33 1 1
....................................................................................................GGAGATAGGTACGAGGCTAGT......................................... 21 3 3 0.33 1 1
....................................................................................................GGAGACAGGTACGAGGCTAGT......................................... 21 3 3 0.33 1 1
....................................................................................................GGAGAAAGTCAAGAGGCTAGT......................................... 21 2 3 0.33 1 1
....................................................................................................GGAAAAAGTCACGAGGCTAGT......................................... 21 3 7 0.14 1 1
....................................................................................................GTAGAAAGTCAAGAGGCTAGT......................................... 21 3 8 0.13 1 1
......................................................................................................................AGTTGGTGAGCCCGTAGGG......................... 19 3 20 0.05 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droPer2 scaffold_13:198129-198290 + dpe_138 confident AGATCGACCGACGATCTATGGAGGATCCCTGTTTCATACGATTGAAGTACTGATAGAGGATGCTTCTCTATTGGTGTATTCGAAAACCAACAGCAAGCCACCTCTTTCAATACTCCGATCAACCAGTCTGGTATCCCAATATTCTGTGACGAACGCTGGAGG
dp5 XL_group1e:8366108-8366269 - dps_62 confident AGATCGATCGACGATCTATGGAGGATCCCTGTTTCATACGATTGAAGTACTGATAGAGGAGCCTTCTCTATTGGTGTATTCGAAAACCATCAGCAAGCCACCTCTTTCAGTACTCCGATCAACCAGCATGGTATCCCAATATTCTGTGACGAACGCTGGAGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
AGATCGACCGACGATCTATGGAGGATCCCTGTTTCATACGATTGAAGTACTGATAGAGGATGCTTCTCTATTGGTGTATTCGAAAACCAACAGCAAGCCACCTCTTTCAATACTCCGATCAACCAGTCTGGTATCCCAATATTCTGTGACGAACGCTGGAGGSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.........................................................................................ACAGCAAGCCACCTCTTTCAAT...................................................22123.00233110063
.........................................................................................ACAGCAAGCCACCTCTTTCA.....................................................2016.006010131
.........................................................................................ACAGCAAGCCACCTCTTTCAA....................................................2113.003010020
.........................................................................................ACAGCAAGCCACCTCTTTC......................................................1911.001000010
..................................................TGATAGAGGATGCTTCTCTATT..........................................................................................2211.001010000
..................................................TGATAGAGGATGCTTCTCTATTGGTGT.....................................................................................2711.001000001
..................................................TGATAGAGGATGCTTCTCTATTGA........................................................................................2411.001000001
..................................................TGATAGAGGATGCTTCTCTATTC.........................................................................................2311.001000010
..................................................TGATAGAGGATGCTTCTCCT............................................................................................2030.331000001
dp5
AGATCGATCGACGATCTATGGAGGATCCCTGTTTCATACGATTGAAGTACTGATAGAGGAGCCTTCTCTATTGGTGTATTCGAAAACCATCAGCAAGCCACCTCTTTCAGTACTCCGATCAACCAGCATGGTATCCCAATATTCTGTGACGAACGCTGGAGGSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.........................................................................................TCAGCAAGCCACCTCTTTCAGT...................................................22151.0051010728118050
.........................................................................................TCAGCAAGCCACCTCTTTCAG....................................................21122.002201210021060
.........................................................................................TCAGCAAGCCACCTCTTTCAGC...................................................2215.0050013100000
.........................................................................................TCAGCAAGCCACCTCTTTCAGTT..................................................2314.0040100001020
..........................................................................................CAGCAAGCCACCTCTTTCAGT...................................................2113.0030100010010
...........................................................................................AGCAAGCCACCTCTTTCAGT...................................................2013.0030100000020
..................................................TGATAGAGGAGCCTTCTCTATTG.........................................................................................2321.5030110001000
.........................................................................................TCAGCAAGCCACCTCTTTCA.....................................................2011.0010001000000
..........................................................................................CAGCAAGCCACCTCTTTCAG....................................................2011.0010100000000
.........................................................................................TCAGCAAGCCACCTCTTTCAGTA..................................................2311.0010100000000
.........................................................................................TCAGCAAGCCACCTCTTTCAGA...................................................2211.0010001000000
.........................................................................................TCAGCAAGCCACCTCTTTCAGTAA.................................................2411.0010000000010
..................................................TGATAGAGGAGCCTTCTCTT............................................................................................2020.5010000010000
..................................................TGATAGAGGAGCCTTCTCTAT...........................................................................................2120.5010000001000
..................................................TGATAGAGGAGCCTTCTCTA............................................................................................2020.5010000001000

Generated: 10/20/2015 at 07:37 PM