ID:

dpe_137

 Coordinate:

scaffold_13:191103-191176 +

 Confidence:

candidate

 Class:

Testes-restricted

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-26.7 -26.6 -26.2

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CAAGACCAGCCGTGGGCGAAAAGACCCCGGAGGACAATCATTGGAAGTCCGGTAGTTTTATCCAGTGTACCAGCTCTTAAGTGATTTCATTTCTTATAGCGAGTACACTCGGTAGACCTACACGATCATTCTCCATCATCGGTCAAGGATCAATACTGTTCCATTTGGTGTGTG

*******************************************...(((..((((.((((((.(((((((..(((..((((.(((...))).)))).)))..))))))).)))))).))))..))).....******************************************* 		Read size # Mismatch Hit Count Total Norm Total V111

male body		 M042

female body

 V050

head

 V057

head

 M021

embryo

 V042

embryo
..............................................................................................TATAGCGAGTACACTCGGTAGA.......................................................... 22 0 1 15.00 15 12 2 1 0 0 0
..............................................................................................TATAGCGAGTACACTCGGTA............................................................ 20 0 1 5.00 5 4 1 0 0 0 0
..............................................................................................TATAGCGAGTACACTCGGT............................................................. 19 0 1 3.00 3 2 1 0 0 0 0
..............................................................................................TATAGCGAGTACACTCGGTAG........................................................... 21 0 1 2.00 2 0 1 1 0 0 0
...............................................................................................ATAGCGAGTACACTCGGTAGA.......................................................... 21 0 1 2.00 2 2 0 0 0 0 0
..............................................................................................TATAGCGAGTACAATCGGTAGA.......................................................... 22 1 1 1.00 1 0 0 1 0 0 0
...............................................................................................ATAGCGAGTACACTCGGTAGC.......................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..........................................................TATCCAGTGTACCAGCTCTTC............................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................TATAGCGAGTACACTCGG.............................................................. 18 0 1 1.00 1 0 0 0 0 1 0
..............................................................................................TTTAGCGAGTACACTCGGTAG........................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................ATAGCGAGGACACTCGGTAG........................................................... 20 1 1 1.00 1 0 1 0 0 0 0
..............................................................................................TATAGCGAGTACACTCGGTAGC.......................................................... 22 1 1 1.00 1 0 0 0 1 0 0
..........................................................TATCCAGTGTACCAGCTCTTAAGA............................................................................................ 24 1 1 1.00 1 0 1 0 0 0 0
..............................................................................................TATAGCGAGTACACTCGGTAGTCC........................................................ 24 1 1 1.00 1 1 0 0 0 0 0
.........................................TGCAAGTACGGTCGTTTTA.................................................................................................................. 19 3 6 0.17 1 1 0 0 0 0 0
..........CGTGGGGGAAACGACCCAG................................................................................................................................................. 19 3 10 0.10 1 0 0 0 1 0 0
...................................................................................................................................................GATCAATACTGAGCCACTT........ 19 3 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

GTTCTGGTCGGCACCCGCTTTTCTGGGGCCTCCTGTTAGTAACCTTCAGGCCATCAAAATAGGTCACATGGTCGAGAATTCACTAAAGTAAAGAATATCGCTCATGTGAGCCATCTGGATGTGCTAGTAAGAGGTAGTAGCCAGTTCCTAGTTATGACAAGGTAAACCACACAC

*******************************************...(((..((((.((((((.(((((((..(((..((((.(((...))).)))).)))..))))))).)))))).))))..))).....******************************************* 		Read size # Mismatch Hit Count Total Norm Total M021

embryo

 V057

head
...................................................................................................................TGGATTTGCTAGTAAGAGGTA...................................... 21 1 1 1.00 1 1 0
.............................CTCCTGTTAGTAACCTTC............................................................................................................................... 18 0 1 1.00 1 1 0
.............................................................................................................................ATTAAGAGGTAGTGGGCAGT............................. 20 3 12 0.08 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droPer2 scaffold_13:191061-191219 + dpe_137 candidate GCCGTGGGCGAAAAGACCCCGGAGGACAATCATTGGAAGTCCGGTAGTTTTATCCAGTGTACCAGCTCTTAAGTGATTTCATTTCTTATAGCGAGTACACTCGGTAGACCTACACGATCATTCTCCATCATCGGTCAAGGATCAATACTGTTCCATTTG
dp5 XL_group1e:8373149-8373307 - dps_3833 candidate GCCGTGTACGAAAAGACCCCGGACGACAATCATTGGAAGTCTGGTACTTTTATCCAGTGTACCAGCTCTTAAGTGATCTCATTTCTTATAGCGAGTACACTCGGTAGACCTACACGTTCATTCTCCATCATCGGTCAAGGGTCAATACTGTTCCCTTTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
GCCGTGGGCGAAAAGACCCCGGAGGACAATCATTGGAAGTCCGGTAGTTTTATCCAGTGTACCAGCTCTTAAGTGATTTCATTTCTTATAGCGAGTACACTCGGTAGACCTACACGATCATTCTCCATCATCGGTCAAGGATCAATACTGTTCCATTTGSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
......................................................................................TATAGCGAGTACACTCGGTAGA...................................................22115.00150201012
......................................................................................TATAGCGAGTACACTCGGTA.....................................................2015.005010004
......................................................................................TATAGCGAGTACACTCGGT......................................................1913.003010002
......................................................................................TATAGCGAGTACACTCGGTAG....................................................2112.002010100
.......................................................................................ATAGCGAGTACACTCGGTAGA...................................................2112.002000002
.......................................................................................ATAGCGAGTACACTCGGTAGC...................................................2111.001000001
..................................................TATCCAGTGTACCAGCTCTTC........................................................................................2111.001000001
......................................................................................TATAGCGAGTACACTCGG.......................................................1811.001100000
......................................................................................TATAGCGAGTACACTCGGTAGC...................................................2211.001000010
..................................................TATCCAGTGTACCAGCTCTTAAGA.....................................................................................2411.001010000
dp5
GCCGTGTACGAAAAGACCCCGGACGACAATCATTGGAAGTCTGGTACTTTTATCCAGTGTACCAGCTCTTAAGTGATCTCATTTCTTATAGCGAGTACACTCGGTAGACCTACACGTTCATTCTCCATCATCGGTCAAGGGTCAATACTGTTCCCTTTGSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
......................................................................................TATAGCGAGTACACTCGGTAGA...................................................2215.0050000000050
......................................................................................TATAGCGAGTACACTCGGTAG....................................................2112.0020000000020
.......................................................................................ATAGCGAGTACACTCGGTAGA...................................................2111.0010000001000
..................................................TATCCAGTGTACCAGCTCTTAAGTGAT..................................................................................2730.3310000001000
..................................................TATCCAGTGTACCAGCTCTTAAGTGATC.................................................................................2830.3310000000010
.................................................TTATCCAGTGTACCAGCTCTTAAGTGA...................................................................................2730.3310000000010
..................................................TATCCAGTGTACCAGCTCTTAA.......................................................................................2230.3310000000010

Generated: 10/20/2015 at 06:48 PM