ID:

dpe_1367

 Coordinate:

scaffold_3:2640322-2640513 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.0 -12.6 -12.5

Flybase annnotation

exon [dper_GLEANR_3849:16]; CDS [Dper\GL21765-cds]; CDS [Dper\GL21765-cds]; exon [dper_GLEANR_3849:17]; intron [Dper\GL21765-in]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATCACTCCCATCACTCGCAGCCCTACCATGTGGACGCCTCAAACGAGCCCGTGATCGACTACCAGCAGCAGCAGCCAATGGGCTTCACGAGTTCCCAACAAGCAATGGGTTTTTCGGGGGCCCAGCAGGCGATGAACTTTGCGGGCGCTCAGCAACCAATGGACTTTACGGGCGCTCAGCAGCAAATGGACTTTGCGGGCTCCCAGCAGCAACAGCAGCAGATGGAATATCCGGTTGTACAGCAGCCAATGGATTTTGCAACCGCCCAGCAACCCATGGACTATCCTGCTGC
*********************************************************************************************************************************************************................(((.((((.((((..........)))))))).))).........******************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M021
embryo
 M042
female body
 V042
embryo
 V057
head
 V050
head
.........................................................................................................................................................AACCAATGGACTTTACGGGC....................................................................................................................... 20 0 1 4.00 4 4 0 0 0 0
............................................................................................................................................................CAATGGACTTTACGGGCGCTC................................................................................................................... 21 0 1 3.00 3 3 0 0 0 0
...............................................................................................................................................................................................................................................TAGCAGCCAATGGATTTTGC................................. 20 1 1 1.00 1 0 1 0 0 0
................................................................................................................................................................................................TTGCGGGCTCCCAGCAGCAAC............................................................................... 21 0 1 1.00 1 0 1 0 0 0
............................................................................AATGGGCTTCACGAGTTCCCAACAAGC............................................................................................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0
........................................................................................................................................................CAACCAATGGACTTTACGGGC....................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0
......................................................................................................................................AACTTTGCGGGCGCTCAGCAAC........................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................GGCACCAGGAGGCGATGAA............................................................................................................................................................ 19 3 20 0.20 4 0 1 0 3 0
..................................................................................................................................................................................................................................................AAGCCAAGGGATTTTGCA................................ 18 2 8 0.13 1 0 1 0 0 0
....................................................................................................................................................................................................CGGCTCCCGGCAGAAACAGCA........................................................................... 21 3 12 0.08 1 0 0 0 0 1

Anti-sense strand reads

TAGTGAGGGTAGTGAGCGTCGGGATGGTACACCTGCGGAGTTTGCTCGGGCACTAGCTGATGGTCGTCGTCGTCGGTTACCCGAAGTGCTCAAGGGTTGTTCGTTACCCAAAAAGCCCCCGGGTCGTCCGCTACTTGAAACGCCCGCGAGTCGTTGGTTACCTGAAATGCCCGCGAGTCGTCGTTTACCTGAAACGCCCGAGGGTCGTCGTTGTCGTCGTCTACCTTATAGGCCAACATGTCGTCGGTTACCTAAAACGTTGGCGGGTCGTTGGGTACCTGATAGGACGACG
*******************************************************************************................(((.((((.((((..........)))))))).))).........********************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V057
head
 M042
female body
 V111
male body		 V050
head
 M021
embryo
.......................................................................................................................................................................................................................................................................CGCGTCCTTGGGAACCTGA.......... 19 3 13 4.15 54 19 21 14 0 0
........................................TTTGCTCGGGCACTAGCTGAT....................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0
.......................ATGGTACACCTGCGGAGTT.......................................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................................................................................................................................GGTCGTCGGTTCCCTCAAACG................................. 21 3 1 1.00 1 1 0 0 0 0
.................................................................................CGAAGTGCTCAAGGGTTGT................................................................................................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0
......................................................................................................................................................................................................................................................................GCGGGTCGTTGGGTACCTGGT......... 21 1 2 0.50 1 0 1 0 0 0
................................................................................CCGGAGTGCTGAAGCGTTG................................................................................................................................................................................................. 19 3 12 0.50 6 0 0 2 0 4
.........................................................................................................................GGTACTCCGCTACTTCAAACG...................................................................................................................................................... 21 3 4 0.50 2 1 0 0 1 0
.................................................................................CGGAGTGCTGAAGCGTTG................................................................................................................................................................................................. 18 3 20 0.40 8 8 0 0 0 0
..........................................................................................................................................................................................................................................................................GTCCTTGGGAACCTGAAAGG...... 20 3 8 0.25 2 0 2 0 0 0
................................................................................................................................................CGCGAGTCTTTGGTAAACTGA............................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0
.........................................................................................................................GGTCCTCGGCTACTTCAAACG...................................................................................................................................................... 21 3 4 0.25 1 0 0 0 1 0
.........................................................................................................................GGTCCTCGGCTCCTTGAAACG...................................................................................................................................................... 21 3 8 0.13 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_3:2640272-2640563 - dpe_1367 ATCACT-------------------------------------------------------CC--CA------------------------TCACTCGCAGCCCTACCATGTGGACGCCTCAAACGAGCCCGT---------------GA---TCG---ACTACCAGCAGCAGCAGCCAA---------TGGGCTTCACGAGT---TCCCAACAAGCAATGGGTTTTTCGGGGGCCCAGCAGGCGATGAACTTTGCGGGCGCTCAGCAACCAATGGACTTTACGGGCGCTCAGCAGCAAATGGACTTTGCGGGCTCCCAGCAGCAAC---------------------AGCAGCAGATGGAATATCCGGTTGTACAGCAGCCAATGGATTTTGCAACCGCCCAGCAACCCATGGACTATCCTGCTGC
dp5 2:19891719-19892019 - ATCACT-------------------------------------------------------CC--CA------------------------TCACTCGCAGCCCTACCATGTGGACGCCTCAAACGAGCCCGT---------------GA---TCG---ACTACCAGCAACAGCAGCAGCAGCAGCCAATGGGCTTCACGAGT---TCCCAACAGGCAATGGGCTTTTCGGGGGCCCAGCAGGCGATGAACTTTGCGGGCTCTCAGCAACCAATGGACTTTACGGGCGCTCAGCAGCAAATGGAATTTACGGGCTCCCAGCAGCAGC---------------------AGCAGCAGATGGAATATCCGGTGGTCCAGCAGCCAATGGATTTTGCAACCGCCCAGCAACCAATGGACTATCCTGCTGC
droWil2 scf2_1100000004902:11799479-11799564 + CA--GT-------------------------------------------------------CA---------------------TC-----GCAATCACAAATCTATCTCTTGGACTCATCCAACGATCCTGGTGCACAGCCTGGAGCCATGCTGG---ACTATCATCAGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13047:6288640-6288728 - AATCTT-------------------------------------------------------CG--CA------------------------ACCATCGCAAATATATCTACTGGATGCATCCAATGAGCCAGT---------------GCAGCCTG---TTGACTATCAGCCGCAGCAGT---------CGGACTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6540:1786674-1786763 + AGCCAG-------------------------------------------------------CC--CAA----------------GA-----CCCAAAACAAATATATGTGCTGGATGCTTCCAATGAACCCGTC---CAGCCCG---CCA---CTG---ACTACCAGCCGCAACAGTCGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_14906:11609404-11609486 - AGCAGC-------------------------------------------------------AG--CA------------------------GCAATCGCAAATATATCAATTGGATGCATCCAATGAGCCAGT---------------GCAGCCGGTCGACTATCA---GCCGCAGCAAG---------CA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13340:5552684-5552777 - ACCATT-------------------------------------------------------TC--CAGCAGATAGGCGCACCCATTGGCCAACCGTCCCAAATCTACGATGTGGATTCGCCCAACGAGCCGCC---------------CACACTCG---ATTATCAGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396708:3261111-3261182 + ACCGAT-------------------------------------------------------TGGCCA------------------------ACAGTCCCAAATATATGTTGTGGATTCGCCCAACGGGCCGCC---------------CACACTCG---ATTATCAGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302619:197519-197701 + AAGTCTTCGATGACGGCGACTACGCCGTGCATCACCAGCAGCAAATGGGGTTGGGTGGCCAGC--CA-----------------TC-----GCAGTCGCAGGTGTATCTGGTGGATTCGCCCAACGAGACCCA---------------AACTCTGG---ACTACCAGCAGCAGCCGCAGC---------TGGACTTCCAGC------------------------------------------------------------------------------------------------------------------------AGGCGCAGGGAATGGAGCAAATGCAG---------AT----------------------------------------------------------------GCAGC
droFic1 scf7180000453910:873450-873540 + AATGCC-------------------------------------------------------AT--CA-----------------TC-----ACAGTCACAGATCTACATGGTGGATTCGTCTAACGAACCCAC---------------GAACCTCG---ACTATCAGCAGCCACCGCAGA---------TGGACTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491278:1250560-1250741 + AGCCA-------------------------------------------------------------------------------TC-----CCAGTCGCAGATCTACATGGTGGACTCGTCCAACGAGCCCAC---------------GACCCTCG---ACTACCAGCAGCCTCCGCAGT---------TGGACTTCCAGCAGCCTCCGCAACA------------------------------------------------------------GGACTT---------TCAGCAGCCTCCACAGTT---GGACTACCAGCAAGTGCAGGGCATGGAGCAGTTGCAGCACCAAGTGAT---------------GCAGCAG-----------------------------------------------
droRho1 scf7180000768980:17137-17205 + AGCCA-------------------------------------------------------------------------------TC-----ACAGTCGCAGATCTACATGGTGGATTCGTCCAACGAGCCCAC---------------GACCCTCG---ACTACCAGCCGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302155:2199019-2199110 - AGCAAC-------------------------------------------------------CG--CAA----------------TC-----GCAGTCGCAGATCTACCTCGTGGATTCGTCCAACGAGCCCAC---------------AAACTTAG---ACTATCAGCAACCACCGCAGC---------TGGACTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415261:99056-99140 - AGCAA-------------------------------------------------------------------------------TC-----GCAGTCGCAGATCTACCTGGTGGATTCGTCCAACGAGCCCAC---------------AAACCTAG---ACTACCAGCAGCCACCGCAGC---------TGGACTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409791:317639-317737 + AGCAA-------------------------------------------------------------------------------TC-----GCAGTCGCAAATCTACCTCGTGGATTCGTCAAACGAGCCCAC---------------GAATCTTG---ACTACCAGCAGGCACCGCAAC---------TGGACTTCCA------------------------------------------------------------------------------------------------------------------------------GCAGGGAATGG-------------------------------------------------------------------------------------------
dm3 chr3R:2481316-2481419 + AGCA--------------------------------------------------------------------------------TC-----GCAGTCGCAGATATACATGGTGGATTCGTCCAACGAGCCCAC---------------GACTCTCG---ACTACCAGCAACCACCGCAAC---------TGGACTTCCAAC------------------------------------------------------------------------------------------------------------------------AAGTGCAGGAAATGG-------------------------------------------------------------------------------------------
droSim2 3r:2377590-2377693 + AGCA--------------------------------------------------------------------------------TC-----GCAGTCGCAGATCTACATGGTGGATTCGTCCAACGAGCCCAC---------------GAATCTCG---ACTACCAGCAGCCACCGCAGC---------TAGACTTCCAAC------------------------------------------------------------------------------------------------------------------------AAGTGCAGGGAATGG-------------------------------------------------------------------------------------------
droSec2 scaffold_6:2573059-2573162 + AGCA--------------------------------------------------------------------------------TC-----GCAGTCGCAGATCTACATGGTGGATTCTTCCAACGAGCCCAC---------------GAATCTCG---ACTACCAGCAGCCACCGCAGC---------TAGACTTCCAAC------------------------------------------------------------------------------------------------------------------------AAGTGCAGGGAATGG-------------------------------------------------------------------------------------------
droYak3 3R:7935676-7935760 - ATCA--------------------------------------------------------------------------------AC-----GCAGTCGCAGATCTACATGGTGGATTCGTCCAACGAGCCCAC---------------GACTCTCG---ACTACCAGCAACCATCACAGT---------TGGACTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4770:2723244-2723374 + AGCCGT-------------------------------------------------------CA---------------------AC-----GCAGTCGCAAATCTACATGGTGGATTCGTCCAACGAGCCCAC---------------GACTCTCG---ACTACCAGCAGCCACCGCAGC---------TAGACTTCCAAC------------------------------------------------------------------------------------------------------------------------AAGTGCAGGGAATGGAGCAGTTGCAGCAACATGCGATG--------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
ATCACT-------------------------------------------------------CC--CA------------------------TCACTCGCAGCCCTACCATGTGGACGCCTCAAACGAGCCCGT---------------GA---TCG---ACTACCAGCAGCAGCAGCCAA---------TGGGCTTCACGAGT---TCCCAACAAGCAATGGGTTTTTCGGGGGCCCAGCAGGCGATGAACTTTGCGGGCGCTCAGCAACCAATGGACTTTACGGGCGCTCAGCAGCAAATGGACTTTGCGGGCTCCCAGCAGCAAC---------------------AGCAGCAGATGGAATATCCGGTTGTACAGCAGCCAATGGATTTTGCAACCGCCCAGCAACCCATGGACTATCCTGCTGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................................................................................AACCAATGGACTTTACGGGC............................................................................................................................................2014.004400000
..............................................................................................................................................................................................................................................................................CAATGGACTTTACGGGCGCTC........................................................................................................................................2113.003300000
..................................................................................................................................................................................................................................................................................................................TTGCGGGCTCCCAGCAGCAAC---------------------...............................................................................2111.001010000
..................................................................................................................................................................................AA---------TGGGCTTCACGAGT---TCCCAACAAGC..................................................................................................................................................................................................................2711.001001000
..........................................................................................................................................................................................................................................................................CAACCAATGGACTTTACGGGC............................................................................................................................................2111.001001000
........................................................................................................................................................................................................................................................AACTTTGCGGGCGCTCAGCAAC.............................................................................................................................................................2211.001100000
dp5
ATCACT-------------------------------------------------------CC--CA------------------------TCACTCGCAGCCCTACCATGTGGACGCCTCAAACGAGCCCGT---------------GA---TCG---ACTACCAGCAACAGCAGCAGCAGCAGCCAATGGGCTTCACGAGT---TCCCAACAGGCAATGGGCTTTTCGGGGGCCCAGCAGGCGATGAACTTTGCGGGCTCTCAGCAACCAATGGACTTTACGGGCGCTCAGCAGCAAATGGAATTTACGGGCTCCCAGCAGCAGC---------------------AGCAGCAGATGGAATATCCGGTGGTCCAGCAGCCAATGGATTTTGCAACCGCCCAGCAACCAATGGACTATCCTGCTGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................GGCTCCCAGCAGCAGC---------------------AGCA...........................................................................2012.0020000200000
...............................................................................................................................................................................................................................................CAGGCGATGAACTTTGCGGGC.......................................................................................................................................................................2111.0010100000000
.................................................................................................................................................................................................................................TTTCGGGGGCCCAGCAGGCGA.....................................................................................................................................................................................2111.0010100000000
....................................................................................................................................................................................................................................................................TCTCAGCAACCAATGGACTTTACGGG.............................................................................................................................................2611.0010000000010
....................................................................................................................................................................................................................................................................................ACTTTACGGGCGCTCAGCAGC..................................................................................................................................2111.0010100000000
...........................................................................................................................................................................................................................................................................................................ATGGAATTTACGGGCTCCCA............................................................................................................2011.0010000001000
....................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCAACCGCCCAGCAAC...................2011.0010100000000
............................................................................................................................CGAGCCCGT---------------GA---TCG---ACTACCAGCA..................................................................................................................................................................................................................................................................2411.0010000100000
................................................................................................CGCAGCCCTACCATGTGGAC.......................................................................................................................................................................................................................................................................................................................2011.0010010000000
....................................................................................................................................................................................................................................................................................................................ACGGGCTCCCAGCAGCAGC---------------------AG.............................................................................2111.0010000000100
...............................................................................................................................................................................................................................................................................................................................................................................................ATGGATTTTGCAACCGCCCAGC......................2211.0010100000000
...................................................................................................................................................................................................................................................CGATGAACTTTGCGGGCTCT....................................................................................................................................................................2011.0010100000000
...........................................................................................................................................................................................................................................CCAGCAGGCGATGAACTTTGCGGG........................................................................................................................................................................2411.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................AGATGGAATATCCGGTGGTCCA...................................................2211.0010100000000
...........................................................................................................................................................................................................................................CCAGCAGGCGATGAACTTTGCGGGC.......................................................................................................................................................................2511.0010100000000
.....................................................................................................................................................................................................................................................................CTCAGCAACCAATGGACTTTACGGGC............................................................................................................................................2611.0010010000000
..........................................................................................................................................................................................................................................................CTTTGCGGGCTCTCAGCAACC............................................................................................................................................................2111.0010100000000
..............................................................................................................................................................................................................................................................................................................................AGCAGCAGC---------------------AGCAGCAGATGG...................................................................21120.0810010000000
...................................................................................................................................................................CCAGCAACAGCAGCAGCAGCAGC.................................................................................................................................................................................................................................................23200.0510100000000
droWil2
CA--GT-------------------------------------------------------CA---------------------TC-----GCAATCACAAATCTATCTCTTGGACTCATCCAACGATCCTGGTGCACAGCCTGGAGCCATGCTGG---ACTATCATCAGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................CAACGATCCTGGTGCACAGC..............................................................................................................................................................................................................................................................................................2011.00101000
..............................................................................................................................................TGGAGCCATGCTGG---ACTATCATCAGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2711.00100001
droVir3
AATCTT-------------------------------------------------------CG--CA------------------------ACCATCGCAAATATATCTACTGGATGCATCCAATGAGCCAGT---------------GCAGCCTG---TTGACTATCAGCCGCAGCAGT---------CGGACTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................CTACTGGATGCATCCAATGAGCCAGT---------------.......................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000001000000000000000000000000000000
...............................................................................................................TGGATGCATCCAATGAGCCAGT---------------GC.....................................................................................................................................................................................................................................................................................2411.001000000000000010000000000000000000000000000000000000000000000000
................................................................................................................................................................TGACTATCAGCCGCAGCAGT---------CGGAC.........................................................................................................................................................................................................................................2511.001000000000000000000000000100000000000000000000000000000000000000
.................................................................................................................................................................GACTATCAGCCGCAGCAGT---------C.............................................................................................................................................................................................................................................2011.001000000000000000000000000000000000010000000000000000000000000000
droMoj3
AGCCAG-------------------------------------------------------CC--CAA----------------GA-----CCCAAAACAAATATATGTGCTGGATGCTTCCAATGAACCCGTC---CAGCCCG---CCA---CTG---ACTACCAGCCGCAACAGTCGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AGCAGC-------------------------------------------------------AG--CA------------------------GCAATCGCAAATATATCAATTGGATGCATCCAATGAGCCAGT---------------GCAGCCGGTCGACTATCA---GCCGCAGCAAG---------CA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
ACCATT-------------------------------------------------------TC--CAGCAGATAGGCGCACCCATTGGCCAACCGTCCCAAATCTACGATGTGGATTCGCCCAACGAGCCGCC---------------CACACTCG---ATTATCAGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................ATCTACGATGTGGATTCGCC..................................................................................................................................................................................................................................................................................................................2011.001010000
....................................................................................................................TCGCCCAACGAGCCGCC---------------C......................................................................................................................................................................................................................................................................................1811.001010000
.........................................................................AGGCGCACCCATTGGCCAACCGT...........................................................................................................................................................................................................................................................................................................................................2311.001010000
droBip1
ACCGAT-------------------------------------------------------TGGCCA------------------------ACAGTCCCAAATATATGTTGTGGATTCGCCCAACGGGCCGCC---------------CACACTCG---ATTATCAGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AAGTCTTCGATGACGGCGACTACGCCGTGCATCACCAGCAGCAAATGGGGTTGGGTGGCCAGC--CA-----------------TC-----GCAGTCGCAGGTGTATCTGGTGGATTCGCCCAACGAGACCCA---------------AACTCTGG---ACTACCAGCAGCAGCCGCAGC---------TGGACTTCCAGC------------------------------------------------------------------------------------------------------------------------AGGCGCAGGGAATGGAGCAAATGCAG---------AT----------------------------------------------------------------GCAGCSizeHit CountTotal NormTotal
No Reads
droFic1
AATGCC-------------------------------------------------------AT--CA-----------------TC-----ACAGTCACAGATCTACATGGTGGATTCGTCTAACGAACCCAC---------------GAACCTCG---ACTATCAGCAGCCACCGCAGA---------TGGACTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AGCCA-------------------------------------------------------------------------------TC-----CCAGTCGCAGATCTACATGGTGGACTCGTCCAACGAGCCCAC---------------GACCCTCG---ACTACCAGCAGCCTCCGCAGT---------TGGACTTCCAGCAGCCTCCGCAACA------------------------------------------------------------GGACTT---------TCAGCAGCCTCCACAGTT---GGACTACCAGCAAGTGCAGGGCATGGAGCAGTTGCAGCACCAAGTGAT---------------GCAGCAG-----------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AGCCA-------------------------------------------------------------------------------TC-----ACAGTCGCAGATCTACATGGTGGATTCGTCCAACGAGCCCAC---------------GACCCTCG---ACTACCAGCCGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
AGCAAC-------------------------------------------------------CG--CAA----------------TC-----GCAGTCGCAGATCTACCTCGTGGATTCGTCCAACGAGCCCAC---------------AAACTTAG---ACTATCAGCAACCACCGCAGC---------TGGACTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AGCAA-------------------------------------------------------------------------------TC-----GCAGTCGCAGATCTACCTGGTGGATTCGTCCAACGAGCCCAC---------------AAACCTAG---ACTACCAGCAGCCACCGCAGC---------TGGACTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
AGCAA-------------------------------------------------------------------------------TC-----GCAGTCGCAAATCTACCTCGTGGATTCGTCAAACGAGCCCAC---------------GAATCTTG---ACTACCAGCAGGCACCGCAAC---------TGGACTTCCA------------------------------------------------------------------------------------------------------------------------------GCAGGGAATGG-------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
AGCA--------------------------------------------------------------------------------TC-----GCAGTCGCAGATATACATGGTGGATTCGTCCAACGAGCCCAC---------------GACTCTCG---ACTACCAGCAACCACCGCAAC---------TGGACTTCCAAC------------------------------------------------------------------------------------------------------------------------AAGTGCAGGAAATGG-------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................TATACATGGTGGATTCGTCCA................................................................................................................................................................................................................................................................................................................21122.002200000000000000000000000000000000000000000000000000000019000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000010000000000000000001000000000
............................................................................................CAGTCGCAGATATACATGGTG..........................................................................................................................................................................................................................................................................................................................21116.001600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100010000000000000000000000000000000000000000001000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000010000
..........................................................................................................CATGGTGGATTCGTCCAACGA............................................................................................................................................................................................................................................................................................................2119.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................AGTCGCAGATATACATGGTGG.........................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................AC---------TGGACTTCCAAC------------------------------------------------------------------------------------------------------------------------AAGTGCA...................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................CAGCAACCACCGCAAC---------TGGACTTC......................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................TGGATTCGTCCAACGAGCCCA.......................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................ATACATGGTGGATTCGTCCAA...............................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................TATACATGGTGGATTCGTCCAACGAGCC.........................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..................................................................................................................ATTCGTCCAACGAGCCCAC---------------G......................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................TACATGGTGGATTCGTCCAAC..............................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000
AGCA--------------------------------------------------------------------------------TC-----GCAGTCGCAGATAT..................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................TGGTGGATTCGTCCAACGAGC..........................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................GATATACATGGTGGATTCGTC..................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
................................................................................................................................................................................CAAC---------TGGACTTCCAAC------------------------------------------------------------------------------------------------------------------------AAGTG.....................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................CAGATATACATGGTGGATTCG....................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................TGGTGGATTCGTCCAACGAG...........................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................CTCG---ACTACCAGCAACCACCGCAAC---------TGGAC.........................................................................................................................................................................................................................................3012.0020000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TC-----GCAGTCGCAGATATACATGGTGGAA.......................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................ACGAGCCCAC---------------GACTCTCG---ACTA........................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................GTCGCAGATATACATGGTGG.........................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................CAC---------------GACTCTCG---ACTACCAGCA..................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................C---------------GACTCTCG---ACTACCAGCAACC...............................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
...............................................................................................TCGCAGATATACATGGTGGATTCGT...................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................TTCGTCCAACGAGCCCAC---------------GACTCTCG---AC..........................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................CGCAGATATACATGGTGGATTT.....................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
...............................................................................................................................................................ACTACCAGCAACCACCGC..........................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................CAGCAACCACCGCAAC---------TGGACT........................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................CCAACGAGCCCAC---------------GACTCTCG---............................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................GTCGCAGATATACATGGTGGA........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................TCGCAGATATACATGGTGGATTCG....................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................CATGGTGGATTCGTCCAACGAG...........................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
......................................................................................................TATACATGGTGGATTCGTCCC................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................CGCAGATATACATGGTGGAC.......................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TACCAGCAACCACCGCAAC---------TGGACTTC......................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................TCGCAGATATACATGGTGGAT.......................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CA--------------------------------------------------------------------------------TC-----GCAGTCGCAGATATACATGGTG..........................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................CAGATATACATGGTGGATTCGTCCAACG.............................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.............................................................................................................................................................................................TGGACTTCCAAC------------------------------------------------------------------------------------------------------------------------AAGTGCAGGAAAT.............................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................AGATATACATGGTGGATTCGT...................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................TCG---ACTACCAGCAACCACCGC..........................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................TC-----GCAGTCGCAGATATACATGG............................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................AGCCCAC---------------GACTCTCG---ACTACCAGCAAC................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................CGCAGATATACATGGTGGATTCGTCCAAC..............................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................TCTCG---ACTACCAGCAACCACCGCAAC---------..............................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................CCACCGCAAC---------TGGACTTCCAA...................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TC-----GCAGTCGCAGATATACATGGTG..........................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TACCAGCAACCACCGCAAC---------TG............................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................C---------------GACTCTCG---ACTACCAGCAAC................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
................................................................................................CGCAGATATACATGGTGGA........................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................TCGTCCAACGAGCCCAC---------------GACT...................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................ATACATGGTGGATTCGTCCAACGAGCCA........................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................CG---ACTACCAGCAACCACCGCAA........................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.....................................................................................................................................................ACTCTCG---ACTACCAGCAACCACCGCAAC---------..............................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................C-----GCAGTCGCAGATATACATGG............................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................C---------TGGACTTCCAAC------------------------------------------------------------------------------------------------------------------------AAGTGCA...................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................GATATACATGGTGGATTCGTA..................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................TGGATTCGTCCAACGAGCC.........................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TC-----GCAGTCGCAGATATACATGGTGGA........................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................ACTACCAGCAACCACCGCAAC---------TG............................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................GTCGCAGATATACATGGTGGATT......................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................TGGTGGATTCGTCCAACGAGCC.........................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................C-----GCAGTCGCAGATATACATGGT...........................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...................................................................................................................................AC---------------GACTCTCG---ACTACCAGCA..................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AGCA--------------------------------------------------------------------------------TC-----GCAGTCGCAGATCTACATGGTGGATTCGTCCAACGAGCCCAC---------------GAATCTCG---ACTACCAGCAGCCACCGCAGC---------TAGACTTCCAAC------------------------------------------------------------------------------------------------------------------------AAGTGCAGGGAATGG-------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...A--------------------------------------------------------------------------------TC-----GCAGTCGCAGATCTACATGGTGGA........................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
...................................................................................................................TTCGTCCAACGAGCCCAC---------------GAATCTCG---A...........................................................................................................................................................................................................................................................................2711.00100010000000000000
............................................................................................CAGTCGCAGATCTACATG.............................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
......................................................................................................................................................................GCAGCCACCGCAGC---------TAG...........................................................................................................................................................................................................................................1711.00100000000001000000
droSec2
AGCA--------------------------------------------------------------------------------TC-----GCAGTCGCAGATCTACATGGTGGATTCTTCCAACGAGCCCAC---------------GAATCTCG---ACTACCAGCAGCCACCGCAGC---------TAGACTTCCAAC------------------------------------------------------------------------------------------------------------------------AAGTGCAGGGAATGG-------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................AGC---------TAGACTTCCAAC------------------------------------------------------------------------------------------------------------------------AAGTGCAGGGAAT.............................................................................................2811.0010100
............................................................................................CAGTCGCAGATCTACATGGTG..........................................................................................................................................................................................................................................................................................................................2111.0011000
.............................................................................................................................GAGCCCAC---------------GAATCTCG---ACTAT.......................................................................................................................................................................................................................................................................2111.0011000
.....................................................................................................................................................................AGCAGCCACCGCAGC---------TAGACTTCCA....................................................................................................................................................................................................................................2511.0010001
droYak3
ATCA--------------------------------------------------------------------------------AC-----GCAGTCGCAGATCTACATGGTGGATTCGTCCAACGAGCCCAC---------------GACTCTCG---ACTACCAGCAACCATCACAGT---------TGGACTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................CTACATGGTGGATTCGTCCAA...............................................................................................................................................................................................................................................................................................................2111.00101000000000
....................................................................................................................................C---------------GACTCTCG---ACTACCAGCAACCAT.............................................................................................................................................................................................................................................................2411.00100100000000
droEre2
AGCCGT-------------------------------------------------------CA---------------------AC-----GCAGTCGCAAATCTACATGGTGGATTCGTCCAACGAGCCCAC---------------GACTCTCG---ACTACCAGCAGCCACCGCAGC---------TAGACTTCCAAC------------------------------------------------------------------------------------------------------------------------AAGTGCAGGGAATGGAGCAGTTGCAGCAACATGCGATG--------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................................................................................................................................................................................................................ATGGAGCAGTTGCAGCAACA...........................................................................2011.0010001000
.......................................................................................................................................................TCTCG---ACTACCAGCAGCCACC............................................................................................................................................................................................................................................................2111.0010000010
......................................................................................................TCTACATGGTGGATTCGTCCAACGAGCC.........................................................................................................................................................................................................................................................................................................2811.0011000000
........................................................................................................................................................................................................C------------------------------------------------------------------------------------------------------------------------AAGTGCAGGGAATGGAGC........................................................................................1911.0010000100
.................................................................................................GCAAATCTACATGGTGGATTCGTCCAAC..............................................................................................................................................................................................................................................................................................................2811.0010100000
......................................................................................................................................................................GCAGCCACCGCAGC---------TAGACTTC......................................................................................................................................................................................................................................2211.0010100000

Generated: 06/08/2015 at 04:06 PM