dpe_1357

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CTAAAAAAAATAGGCATTTTTGTAATGTTCTGGAATCCACAAACTTTCTTGCTATATTAATAATGAATCAATCTATGCAAAAAAAATTATTTCATATAAATCGGTAAATTGGTTAAAAAGATATAGCGGTTTGATTTTTGAAAATTGTTGAACCTATTCAGTTGAGCGGCACTGTATATTATTCTTCACATATCGTTTCAGGAGCCAGTCTTTTAAAGAGGACGATGGAACTTGGAAAGGAAATGATGATG *************************************************************************************................((....((.((((...((((....((((((((...........))))))))))))...)))).))))*******************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M021 embryo	M042 female body	V111 male body	V042 embryo	V057 head
..............................................................................................................................................................................................................................CGATGGAACTTGGAAAGGA..........	19	0	1	1.00	1	1	0	0	0	0
.......................................................................................TATTTCATATAAATCGGTAAA...............................................................................................................................................	21	0	2	0.50	1	0	1	0	0	0
..................................................................................................................................................GTTGAACCTATTCAGTTGAGCGGC.................................................................................	24	0	14	0.21	3	3	0	0	0	0
......................................................................................................................................................AACCTATTCAGTTGAGCGGCACTGTA...........................................................................	26	0	19	0.16	3	3	0	0	0	0
..................................................................................................................................................GTTGAACCTATTCAGTTGAGCGGCACTGT............................................................................	29	0	13	0.08	1	1	0	0	0	0
......................................................................................................................................................................................................CAGGAGCCAGTCTCGTAAC..................................	19	3	16	0.06	1	0	1	0	0	0
..............................................................................................................GGTTAAAAAGATATAGCGGTT........................................................................................................................	21	0	18	0.06	1	0	0	1	0	0
....................................................................................................................................................TGAACCTATTCAGTTCATCGG..................................................................................	21	2	19	0.05	1	0	0	0	0	1
....................................................................................................................................................TGAACCTATTCAGTTGAGCGG..................................................................................	21	0	19	0.05	1	0	0	1	0	0
...................................................................................................ATCGGTACATTGGTTGAAA.....................................................................................................................................	19	2	20	0.05	1	0	0	0	1	0
...............................................................................................................................................................AGTTGAGCGGCAAGGTTTAT........................................................................	20	3	20	0.05	1	0	0	0	1	0

GATTTTTTTTATCCGTAAAAACATTACAAGACCTTAGGTGTTTGAAAGAACGATATAATTATTACTTAGTTAGATACGTTTTTTTTAATAAAGTATATTTAGCCATTTAACCAATTTTTCTATATCGCCAAACTAAAAACTTTTAACAACTTGGATAAGTCAACTCGCCGTGACATATAATAAGAAGTGTATAGCAAAGTCCTCGGTCAGAAAATTTCTCCTGCTACCTTGAACCTTTCCTTTACTACTAC *******************************************************************************................((....((.((((...((((....((((((((...........))))))))))))...)))).))))*************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	V057 head	M021 embryo
............................................................................................................................TCGCCAAACTAAAAACTTTTAACAACTT...................................................................................................	28	0	2	0.50	1	1	0	0
.............................................................................................................................CGCCAAACTAAAAACTTTTAACAA......................................................................................................	24	0	3	0.33	1	1	0	0
........................................................................................................ATTTGACCAATTTGTCTACATC.............................................................................................................................	22	3	3	0.33	1	0	1	0
.................................................................................................................................................................................TAGTAGGAAGTGTATAGC........................................................	18	2	9	0.11	1	0	1	0
.......................................................................................................................................................TGGATAAGTCAACTCGCCGTGACATAT.........................................................................	27	0	9	0.11	1	1	0	0
.........................................................................................................................................................GATAAGTCAACTCGCCGTG...............................................................................	19	0	20	0.10	2	0	0	2
...............................................................................................................................................TAACAACTTGGATAAGTCAACTCGCCGT................................................................................	28	0	12	0.08	1	1	0	0
.....................................................................................................................................................................................................AGTCCTGGGTCAGAAGAGT...................................	19	3	14	0.07	1	1	0	0
..................................................................................................................................................CAACTTGGATAAGTCAACT......................................................................................	19	0	16	0.06	1	1	0	0
................................................................................................................................................................................GTAATAAGAAATGTAGAGCA.......................................................	20	3	20	0.05	1	1	0	0
.......................................................................................................................................................TGGATAAGTCAACTCGCCGTGACA............................................................................	24	0	20	0.05	1	1	0	0

Species	Coordinate	ID	Alignment
droPer2	scaffold_3:1099667-1099917 +	dpe_1357	CTAAAAAA---AATAGGCATTT-TTGTAATGTTCTGGAA-----------------------------------------------TCCACAAACTTTCTTG------------------CTATATTAATAATGAATCAATCTATGCA--------AAAAAAATTATTTCATATAAAT---------CGGTAAATTGGTTAAAAAGAT-----ATAGCGGTT-TGATTTTTGA-AAATTGTTGAACCTATTCAGTTGAGCGGCACTGTATATTATTCTT---C---------ACATAT----------CGTTTCAGGAGCCAGTCTTTTAAAGAGGACGATG----GAACTTGGAAAGGAAATGATGATG
dp5	2:18390596-18390882 +	dps_648	CTAAAAAA---ATTG-GCATTTTTTGTAATGTTTTTGAAAAAATTA----------ATAAATAGCCTTTAAAAACGTGTTCTGGAAACCACAAACTTTCTTG------------------CTATATTAATAATGAATCAATCTATGCA--------AAAA-AATTATTTCATATAAAT---------CGGTAAATTGGTTAAAAAGAT-----ATAGCGGTT-TGATTTTTGA-AAATTGTTGAACCTATTCAGTTGAGCGGCACTGCATATTATTCTT---A---------ACATAT----------CGTTTCAGGAGCCAGTCTTTCAAAGAGGACGATG----GAACTTGGAAAGGAAATGATGATG
droWil2	scf2_1100000004516:2217180-2217379 -		A-------------------------------------------------------------------------------------------ACCGTTTGTA------------------TTCTATAAATAATTGATCGTTTTACTTA--------ACAAAATTTATTTGGTTTAAAT---------TTGAGTGCTCGTTATGAAGAT-----ATAATGTTC-TAAGTCTGAAAAAGAAGTCAAACCTATTCAGTTGAGCGGCACTGTACAATTTTGAT---TAAAAAGTGTATTTTA----------AAACAAAAAATTTAATT------------------------TTTTTAAAGTACATGAT-ATG
droVir3	scaffold_13036:949626-949805 -		CCAAAAAT---TATGTAGATTTTC------------A--------------------------------------------------AAAAAAACTTTTGTA------------------TTTTATAAATAATTGATCGTTTTGCTTA--------ACAAAATTTATTTGGTTTATAT---------C-GAGTGCTCGTTATGAAGAT-----ATTATGTTC-TAAGTCTAAAAAAGAAGTTAAACCTATTCAGTTGAGCGGCACTATATGTTCTGCGT---G---------CAATAT-----------------------------------------------------------------------C
droMoj3	scaffold_6500:20180283-20180447 -		ATTAAAAA-----TTACCATTC-------------TG------------------------------------------------------AAACTTTACTT------------------TGTCATTATTAATTCAATTCTCTATAGC----TATAATAAAATGTATTTC----ATAT---------CGGAATATATATTGAAGAGAT-----AGAACTTTT-CAACTTTCAA-AAAGCCTTAAACCCATACAGTTAAGCGCCGCTCTACATCTTCTT-------------------------------------------------------------------------------------------T
droGri2	scaffold_15252:10101199-10101378 -		TGCGTTG----------------------------------------------------------------------------GAGAACATGAACTTGCTTG------------------TTCCATTAACAATTGATTATACTACACAAGTCTAAAACAAA----ATGGTAATTAAAT---------CGACA-----------AATAT-----ATGGTAATT-TGACTATTTA-ACAGTGCTTAACCTATTTAGTTAAGCAGCAGTGTATATCGATTCTAGTC---------ATTGAC----------CATTGGAGGTGTCTG----------------------------------------------T
droAna3	scaffold_12916:9462634-9462853 -		CCAAAAAT---AATGTAGGTTTTCAGCTATGTTTTTGAAAAAA-AA----------ATAAAAAAAATATAAAAACCAAACCAAAAAAAAAAAAACTTTTGTA------------------TTTTATAAAGAATTGATCGTTTTACTTA--------AAAAAAATTATTTGGTTTAAAT---------CCGAGTGCTCGTTATGAAGAT-----ATTATGTTC-TAAGTCTAAAAAAGAAGTCAAACCTATTCAGTTGAGCGGCACTGTATATTAT-----------------------------------------------------------------------------------------------
droBip1	scf7180000394732:9522-9815 +		CCAAAAAA---AGCGCGCGCATTT-ACAGAATTTCAAGA----TCAAAGCAAAATTCCAAAT-----------------------AACCGTTGACTTTTTCCCGCTACTTTTTTCTT-------GCAAATAATGAGTAAATGAATGAA--------GAATAAAA--TTAAAAATTAAATAGAAAAAAAAACCA-ATTGGAACAAAGAT-----ATAGTGAAA-AATGTAAGAACAATTTTTCAAACCTATTCAGTTGAGCGGCACTGTATGTTGTTTCT---T---------AAATATAATTTTCAAATTTT-------ACAATCAACAAAGGAAAAAGATGCTCCGGCTCTAAAGAGGAAAAGATAA--
droKik1	scf7180000302660:223690-223912 -		CCAAAAAAA--AATGCAGCCATTTTGTTATGTTTTTGAAAAAA-TA----------ATAAAAATAATATAACAACAAACCCGACAAGACACAATTTTTATTA------------------TTTCACAAAAGACAGTTTTCTTTATACA--------AAAAAATTTATTTCGATCAAAT---------CGGAGGGCTTGTTGCAGAGAT-----ACACCGTTT-CAAACTTAAAAGAAAAGTCAAACCTATTCAGTTGAGCGGCACTGTATTTCAAT---------------------------------------------------------------------------------------------C
droFic1	scf7180000453928:25950-26151 -		AAGAAAAATTAAATAAGGAATAAATAATATGTTTTTGAAAAA----------------------------------------------------CCTTCTTC--------------AGCATTTTATTATAAAATGATTCAAGAGTTAA--------AGAAAA-AAAAATTATGGAAAT---------CGGTACACTGGTTTAGGAATT-----ATAGACAAATTACTTCCTCT-AAGATCATGAACCTATTCAGTTGAGCGGCAGTGTATTATT--CTA---A---------ATCTGT----------T-TTTC-----------------------------------------------------AGG
droEle1	scf7180000490172:7703-7838 -		TTGATTT------------------------------------------------------------------------------------------TTGTTTTTTATTGCTTCCAT-------GCTATTAACCGGTTT------------------------------------------------------------------------------------TTAAAATT------------------------AAA--TGTCTTGCTTATTATATGT-------------CTATAT----------CCTTGCAGAAGCCAATCATTCAAAGAAGATGATG----GGACCTGGAAAGGTAATGATGATG
droRho1	scf7180000762212:632-852 -		CCAAAAAT---AATGTAGGTTTTCAGCTATGTTTTTGAAAAAA-AG----------ATAAAAA-AATATAAAAACCAAACCAAAAA-AAAAAAACTTTTGTA------------------TTTTATAAAGAATTGATCGTTTTACTTA--------AAAAAATTTATTTGGTTTAAAT---------CCGAGTGCTCGTTATGAAGAT-----ATTATGTTC-TAAGTCTAAA-AAGAAGTCAAACCTATTCAGTTGAGCGGCAGTGCCTATAATC-------------------------------------------------------------------------------------------ATT
droBia1	scf7180000301661:3958-4018 +		TA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------TATTGCAGAAGTCAATCATTCAAAGAGGATGATG----GTACTTGGAAAGGTAACGATGACG
droTak1	scf7180000411287:5279-5334 -		TTGCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCCAATCCTTTAAAGAAGATGATG----GAACCTGGAAAGGTAATGATGATG
droEug1	scf7180000408813:3177-3287 -		TTATTGAAA--ACTGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATACAATTAA--GGTCTTGTTTACAATATGT-------------ACTTAT----------ACTTGCAGAAGCCAATCCTTTAAAGAAGATGATG----GGACATGGAAAGGTAATGATGACG
dm3	chr3R:403057-403294 +		CCAAAAAAAGTAATGACGATTTTTTGTTATGTTTTTGAAAAAA-AA----------ATAAAAATGATATAAAAACAAATTTAAGAGATCAGAAACTTTGCTA------------------TTAAACAAATGACTGATCTATTCATACA--------TAAAAATTTATTTCGCTTAAAT---------TGGATTGCATATAACCTAGTT-----ACAACGGTT-CAAACCTAAACAAATAGTCAAACCTATTCAGTTGAACGGCACTGTATTTGAATATT---C---------TAATGT----------CTT----------------------------------------------------------T
droSim2	2r:2595149-2595260 -		TTT--------------------------------------------------------------------------------------------------------------------------------------------ATACA--------ATAACATTTATTTCGCTTAAAT---------TGGAGTTCCCTTTATGGAGATTCGAAACAACGTTT-CGAAAATTGA-AAAATGTTAAAGCTATTCAGTTGAGCGGCACTGTACA---------------------------------------------------------------------------------------------------
droSec2	scaffold_26:281374-281485 -		TTT--------------------------------------------------------------------------------------------------------------------------------------------ATACA--------ATAAAATTTATTTCGCTTAAAT---------TGGAGTTCCCTTTATGGAGAT-----AAAACGTTT-CGAAAATTGA-AAAATGTTAAAGATATTCTGTTGAGCGGCACTGTACACTTTT----------------------------------------------------------------------------------------------
droYak3	v2_chrUn_008:93295-93350 -		TTGCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTCAATCATTCAAAGAAGATGATG----GGACATGGAAAGGCAATGATGATG
droEre2	scaffold_4845:2698816-2699001 +		CCAAAAAA-----TGCCAATTTTTTGT--TGTTTTTAAAAAAA-TA----------TCAAAACTCCTTTAATAAAGAAACTAGCAGAACCAAAACTTTGCTA------------------TTTTAAAAATGAC----------------------------------------------------------A-----------TAGAT--------AGGTTT-TGAAAATTAA-AAAAACTCAAACCTATTCAGTTGAGCGGCACTGTATGTATTTTTT-------------TTAAAC----------TGTATCAACAGACGG----------------------------------------------T

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

CTAAAAAA---AATAGGCATTT-TTGTAATGTTCTGGAA-----------------------------------------------TCCACAAACTTTCTTG------------------CTATATTAATAATGAATCAATCTATGCA--------AAAAAAATTATTTCATATAAAT---------CGGTAAATTGGTTAAAAAGAT-----ATAGCGGTT-TGATTTTTGA-AAATTGTTGAACCTATTCAGTTGAGCGGCACTGTATATTATTCTT---C---------ACATAT----------CGTTTCAGGAGCCAGTCTTTTAAAGAGGACGATG----GAACTTGGAAAGGAAATGATGATG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................................................................................................................................................................................................................................................................................................................................................CGATG----GAACTTGGAAAGGA..........	19	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................TATTTCATATAAAT---------CGGTAAA................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................GTTGAACCTATTCAGTTGAGCGGC...........................................................................................................	24	14	0.21	3	3	0	0	0	0	0
...................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCACTGTA.....................................................................................................	26	19	0.16	3	3	0	0	0	0	0
...............................................................................................................................................................................................................................................GTTGAACCTATTCAGTTGAGCGGCACTGT......................................................................................................	29	13	0.08	1	1	0	0	0	0	0
....................................................................................................................................................................................................GGTTAAAAAGAT-----ATAGCGGTT-...................................................................................................................................................	21	18	0.06	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................TGAACCTATTCAGTTGAGCGG............................................................................................................	21	19	0.05	1	0	0	0	0	0	1

dp5

CTAAAAAA---ATTG-GCATTTTTTGTAATGTTTTTGAAAAAATTA----------ATAAATAGCCTTTAAAAACGTGTTCTGGAAACCACAAACTTTCTTG------------------CTATATTAATAATGAATCAATCTATGCA--------AAAA-AATTATTTCATATAAAT---------CGGTAAATTGGTTAAAAAGAT-----ATAGCGGTT-TGATTTTTGA-AAATTGTTGAACCTATTCAGTTGAGCGGCACTGCATATTATTCTT---A---------ACATAT----------CGTTTCAGGAGCCAGTCTTTCAAAGAGGACGATG----GAACTTGGAAAGGAAATGATGATG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..................................................................................................................................................................................................................................................GAACCTATTCAGTTGAGCGGC...........................................................................................................	21	17	18.59	316	6	189	0	3	0	14	98	0	4	2
...................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCA..........................................................................................................	21	17	2.71	46	1	34	0	0	0	1	7	1	2	0
...................................................................................................................................................................................................................................................................................................................................TCTTTCAAAGAGGACGATG----GAACTTG.................	26	1	2.00	2	0	0	0	0	0	0	0	0	2	0
.................................................................................................................................................................................................................................................TGAACCTATTCAGTTGAGCGG............................................................................................................	21	17	1.94	33	0	25	1	0	0	1	5	0	1	0
......................................................................................................................................................................................................................................................CTATTCAGTTGAGCGGCACTG.......................................................................................................	21	20	1.45	29	5	23	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................CTATTCAGTTGAGCGGCACT........................................................................................................	20	20	1.35	27	0	19	0	0	0	0	4	0	4	0
.........................................................................................................................................................................................................................................................................................................................................AAAGAGGACGATG----GAACTTGGAAA.............	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................TTCAGTTGAGCGGCACTGCA.....................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................CCTATTCAGTTGAGCGGCACT........................................................................................................	21	18	0.94	17	0	11	0	0	0	1	5	0	0	0
..............................................................................................................................................................................................................................................TGTTGAACCTATTCAGTTGAG...............................................................................................................	21	17	0.76	13	0	8	0	0	0	0	5	0	0	0
...................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGC...........................................................................................................	20	17	0.76	13	1	12	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................CCTATTCAGTTGAGCGGCACTG.......................................................................................................	22	18	0.72	13	0	9	0	0	0	0	4	0	0	0
...............................................................................................................................................................................................................................................GTTGAACCTATTCAGTTGAGC..............................................................................................................	21	17	0.65	11	0	8	0	0	0	0	2	0	1	0
..................................................................................................................................................................................................................................................GAACCTATTCAGTTGAGCGG............................................................................................................	20	17	0.59	10	0	7	0	0	0	0	3	0	0	0
......................................................................................................................................................................................................................................................CTATTCAGTTGAGCGGCAC.........................................................................................................	19	20	0.45	9	1	7	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................CCTATTCAGTTGAGCGGCAC.........................................................................................................	20	18	0.44	8	0	5	0	1	0	0	0	0	2	0
.............................................................................................................................................................................................................................................TTGTTGAACCTATTCAGTTGA................................................................................................................	21	16	0.38	6	0	5	0	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................TTGAACCTATTCAGTTGAGCG.............................................................................................................	21	17	0.35	6	0	4	0	0	0	0	2	0	0	0
.......................................................................................................................................................................................................................................................TATTCAGTTGAGCGGCACTG.......................................................................................................	20	20	0.35	7	2	0	0	0	0	1	4	0	0	0
.......................................................................................................................................................................................................................................................TATTCAGTTGAGCGGCACT........................................................................................................	19	20	0.30	6	0	5	0	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................GAACCTATTCAGTTGAGCGGCA..........................................................................................................	22	17	0.29	5	0	5	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................ACCTATTCAGTTGAGCGGCA..........................................................................................................	20	18	0.28	5	0	4	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................A-AAATTGTTGAACCTATTCAG....................................................................................................................	21	15	0.27	4	0	3	0	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................ATTGTTGAACCTATTCAGTTG.................................................................................................................	21	16	0.25	4	0	4	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TTTTGA-AAATTGTTGAACCT..........................................................................................................................	20	12	0.25	3	0	3	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................GA-AAATTGTTGAACCTATTCA.....................................................................................................................	21	12	0.25	3	0	1	0	0	0	0	0	0	2	0
...................................................................................................................................................................................................................................TTTTGA-AAATTGTTGAACCTA.........................................................................................................................	21	12	0.25	3	0	2	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................TTGTTGAACCTATTCAGTTGAG...............................................................................................................	22	16	0.25	4	0	0	0	0	0	0	1	2	1	0
......................................................................................................................................................................................................................................TGA-AAATTGTTGAACCTATTC......................................................................................................................	21	13	0.23	3	0	2	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................ACCTATTCAGTTGAGCGGCAC.........................................................................................................	21	18	0.22	4	0	3	0	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................AAATTGTTGAACCTATTCAG....................................................................................................................	20	15	0.20	3	0	1	0	0	0	0	0	0	2	0
....................................................................................................................................................................................................................................TTTGA-AAATTGTTGAACCTAT........................................................................................................................	21	13	0.15	2	0	1	0	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................TTGAACCTATTCAGTTGAGC..............................................................................................................	20	20	0.15	3	0	3	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................AAATTGTTGAACCTATTCAGT...................................................................................................................	21	14	0.14	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................AATTGTTGAACCTATTCAGTT..................................................................................................................	21	15	0.13	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................TTGTTGAACCTATTCAGTTG.................................................................................................................	20	16	0.13	2	0	1	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................TGTTGAACCTATTCAGTTGA................................................................................................................	20	17	0.12	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................GTTGAACCTATTCAGTTGAG...............................................................................................................	20	17	0.12	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................GAACCTATTCAGTTGAGCGGCACT........................................................................................................	24	17	0.12	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................TGAACCTATTCAGTTGAGCGT............................................................................................................	21	18	0.11	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................CCTATTCAGTTGAGCGGCA..........................................................................................................	19	18	0.11	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................CTATTCAGTTGAGCGGCACTT.......................................................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................TTGAACCTATTCAGTTGAG...............................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	2	0
.....................................................................................................................................................................................................GTTAAAAAGAT-----ATAGCGGTT-T..................................................................................................................................................	21	13	0.08	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................GA-AAATTGTTGAACCTATTC......................................................................................................................	20	13	0.08	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................TTTGA-AAATTGTTGAACCTA.........................................................................................................................	20	14	0.07	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................TTGA-AAATTGTTGAACCTATT.......................................................................................................................	21	14	0.07	1	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................GGTTAAAAAGAT-----ATAGCGGTT-...................................................................................................................................................	21	15	0.07	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................TTGGTTAAAAAGAT-----ATAGCGGTT-...................................................................................................................................................	23	15	0.07	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................GTTGAACCTATTCAGTTGAGCGGC...........................................................................................................	24	15	0.07	1	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................A-AAATTGTTGAACCTATTCA.....................................................................................................................	20	15	0.07	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TGGTTAAAAAGAT-----ATAGCGGTT-...................................................................................................................................................	22	15	0.07	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................TTAAAAAGAT-----ATAGCGGTT-TG.................................................................................................................................................	21	16	0.06	1	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................TTGGTTAAAAAGAT-----ATAGCGGA.....................................................................................................................................................	22	16	0.06	1	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................TTAAAAAGAT-----ATAGCGGTT-TT.................................................................................................................................................	21	16	0.06	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................TTGGTTAAAAAGAT-----ATAGCGG......................................................................................................................................................	21	16	0.06	1	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................ATTGTTGAACCTATTCAGTT..................................................................................................................	20	16	0.06	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................GAACCTATTCAGTTGAGCG.............................................................................................................	19	17	0.06	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCAC.........................................................................................................	22	17	0.06	1	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCAA.........................................................................................................	22	17	0.06	1	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................................................................TGAACCTATTCAGTTGAGCGGCACTG.......................................................................................................	26	17	0.06	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................TGAACCTATTCAGTTGAGCGGC...........................................................................................................	22	17	0.06	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................TTGAACCTATTCAGTTGAGCGGC...........................................................................................................	23	17	0.06	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TGTTGAACCTATTCAGTTG.................................................................................................................	19	17	0.06	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TGTTGAACCTATTCAGTTGAGT..............................................................................................................	22	17	0.06	1	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................................................................TGAACCTATTCAGTTGAGCGGT...........................................................................................................	22	17	0.06	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................TGAACCTATTCAGTTGAGCGGCA..........................................................................................................	23	17	0.06	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGG............................................................................................................	19	17	0.06	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................GAACCTATTCAGTTGAGCGGCTT.........................................................................................................	23	18	0.06	1	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................ACCTATTCAGTTGAGCGGCAT.........................................................................................................	21	19	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................ATTCAGTTGAGCGGCACTG.......................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................ATTCAGTTGAGCGGCACT........................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................TTCAGTTGAGCGGCACTG.......................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droWil2

A-------------------------------------------------------------------------------------------ACCGTTTGTA------------------TTCTATAAATAATTGATCGTTTTACTTA--------ACAAAATTTATTTGGTTTAAAT---------TTGAGTGCTCGTTATGAAGAT-----ATAATGTTC-TAAGTCTGAAAAAGAAGTCAAACCTATTCAGTTGAGCGGCACTGTACAATTTTGAT---TAAAAAGTGTATTTTA----------AAACAAAAAATTTAATT------------------------TTTTTAAAGTACATGAT-ATG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCACTG.......................................................................................................	24	16	0.44	7	0	6	0	1	0
...................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCAC.........................................................................................................	22	16	0.44	7	0	7	0	0	0
...............................................................................................................................................................................................................................................GTCAAACCTATTCAGTTGAGCGGCACT........................................................................................................	27	8	0.25	2	0	2	0	0	0
....................................................................................................................................................................................................................................................ACCTATTCAGTTGAGCGGCACTGTAC....................................................................................................	26	8	0.25	2	0	0	0	2	0
...................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCACTGTACA...................................................................................................	28	8	0.25	2	0	2	0	0	0
...................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCACTGTA.....................................................................................................	26	14	0.21	3	0	3	0	0	0
......................................................................................................................................................................................................................................................CTATTCAGTTGAGCGGCACTG.......................................................................................................	21	16	0.19	3	2	0	1	0	0
...................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCACT........................................................................................................	23	16	0.19	3	0	2	0	1	0
....................................................................................................................................................................................................................................................ACCTATTCAGTTGAGCGGCACTG.......................................................................................................	23	16	0.19	3	1	1	0	1	0
....................................................................................................................................................................................................................................................ACCTATTCAGTTGAGCGGCAC.........................................................................................................	21	16	0.19	3	0	3	0	0	0
...................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCA..........................................................................................................	21	17	0.18	3	0	2	0	1	0
......................................................................................................................................................................................................................................................CTATTCAGTTGAGCGGCACTGTA.....................................................................................................	23	14	0.14	2	1	1	0	0	0
....................................................................................................................................................................................................................................................ACCTATTCAGTTGAGCGGCACT........................................................................................................	22	16	0.13	2	0	2	0	0	0
................................................................................................................................................................................................................................................TCAAACCTATTCAGTTGAGCGGCACTG.......................................................................................................	27	16	0.13	2	0	2	0	0	0
...................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGC...........................................................................................................	20	18	0.11	2	0	0	1	1	0
....................................................................................................................................................................................................................................................ACCTATTCAGTTGAGCGGCACTGTA.....................................................................................................	25	14	0.07	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................CCTATTCAGTTGAGCGGCACTGTA.....................................................................................................	24	14	0.07	1	0	1	0	0	0
................................................................................................................................................................................................................................................TCAAACCTATTCAGTTGAGCGGCACTGTA.....................................................................................................	29	14	0.07	1	0	0	1	0	0
................................................................................................................................................................................................................................................TCAAACCTATTCAGTTGAGCGGCAC.........................................................................................................	25	16	0.06	1	0	1	0	0	0
.................................................................................................................................................................................................................................................CAAACCTATTCAGTTGAGCGGCACTG.......................................................................................................	26	16	0.06	1	0	1	0	0	0
....................................................................................................................................................................................................................................................ACCTATTCAGTTGAGCGGCACTGT......................................................................................................	24	16	0.06	1	0	1	0	0	0
...................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCACTGT......................................................................................................	25	16	0.06	1	0	1	0	0	0
................................................................................................................................................................................................................................................TCAAACCTATTCAGTTGAGCG.............................................................................................................	21	19	0.05	1	0	1	0	0	0

droVir3

CCAAAAAT---TATGTAGATTTTC------------A--------------------------------------------------AAAAAAACTTTTGTA------------------TTTTATAAATAATTGATCGTTTTGCTTA--------ACAAAATTTATTTGGTTTATAT---------C-GAGTGCTCGTTATGAAGAT-----ATTATGTTC-TAAGTCTAAAAAAGAAGTTAAACCTATTCAGTTGAGCGGCACTATATGTTCTGCGT---G---------CAATAT-----------------------------------------------------------------------C	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.......................................................................................................................................................................................................TATGAAGAT-----ATTATGTTC-TAAGTCT............................................................................................................................................	25	6	0.67	4	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TATGAAGAT-----ATTATGTTC-TAAGTCTA...........................................................................................................................................	26	6	0.33	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................T-----ATTATGTTC-TAAGTCTAAAAAAGAAG..................................................................................................................................	27	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TGAAGAT-----ATTATGTTC-TAAGTCTAAAAA.......................................................................................................................................	28	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................CTCGTTATGAAGAT-----ATTATGTTC-TAAG...............................................................................................................................................	27	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................CGTTATGAAGAT-----ATTATGTTC-TAAGTCT............................................................................................................................................	28	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................TATGTTC-TAAGTCTAAAAAAGAAGT.................................................................................................................................	25	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................AGTGCTCGTTATGAAGAT-----ATTATGTTC-...................................................................................................................................................	27	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................TGTA------------------TTTTATAAATAATTGATCGTTT....................................................................................................................................................................................................................................	26	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ATTAAAAA-----TTACCATTC-------------TG------------------------------------------------------AAACTTTACTT------------------TGTCATTATTAATTCAATTCTCTATAGC----TATAATAAAATGTATTTC----ATAT---------CGGAATATATATTGAAGAGAT-----AGAACTTTT-CAACTTTCAA-AAAGCCTTAAACCCATACAGTTAAGCGCCGCTCTACATCTTCTT-------------------------------------------------------------------------------------------T	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

TGCGTTG----------------------------------------------------------------------------GAGAACATGAACTTGCTTG------------------TTCCATTAACAATTGATTATACTACACAAGTCTAAAACAAA----ATGGTAATTAAAT---------CGACA-----------AATAT-----ATGGTAATT-TGACTATTTA-ACAGTGCTTAACCTATTTAGTTAAGCAGCAGTGTATATCGATTCTAGTC---------ATTGAC----------CATTGGAGGTGTCTG----------------------------------------------T	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droAna3

CCAAAAAT---AATGTAGGTTTTCAGCTATGTTTTTGAAAAAA-AA----------ATAAAAAAAATATAAAAACCAAACCAAAAAAAAAAAAACTTTTGTA------------------TTTTATAAAGAATTGATCGTTTTACTTA--------AAAAAAATTATTTGGTTTAAAT---------CCGAGTGCTCGTTATGAAGAT-----ATTATGTTC-TAAGTCTAAAAAAGAAGTCAAACCTATTCAGTTGAGCGGCACTGTATATTAT-----------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCAC.........................................................................................................	22	16	5.63	90	4	82	4	0	0	0
...................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCACT........................................................................................................	23	16	5.06	81	21	57	2	0	1	0
...................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCACTG.......................................................................................................	24	15	3.87	58	24	20	13	0	1	0
...................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCACTGTA.....................................................................................................	26	15	3.13	47	24	18	4	0	1	0
...................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCACC........................................................................................................	23	16	1.13	18	0	18	0	0	0	0
...................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCACTGT......................................................................................................	25	15	0.93	14	6	7	1	0	0	0
...............................................................................................................................................................................................................................................GTCAAACCTATTCAGTTGAGCGGCAC.........................................................................................................	26	4	0.75	3	0	3	0	0	0	0
.........................................................................................................................................................................................................................................AAAGAAGTCAAACCTATTCAGTTGAGC..............................................................................................................	27	15	0.67	10	1	9	0	0	0	0
..................................................................................................................................................................................................................................................AAACCTATTCAGTTGAGCGGCAC.........................................................................................................	23	16	0.63	10	0	10	0	0	0	0
................................................................................................................................................................................................................................................TCAAACCTATTCAGTTGAGCGGCACT........................................................................................................	26	16	0.63	10	1	8	1	0	0	0
................................................................................................................................................................................................................................................TCAAACCTATTCAGTTGAGCGGCAC.........................................................................................................	25	16	0.56	9	0	9	0	0	0	0
..................................................................................................................................................................................................................................................AAACCTATTCAGTTGAGCGGCACT........................................................................................................	24	16	0.56	9	2	7	0	0	0	0
...............................................................................................................................................................................................................................................GTCAAACCTATTCAGTTGAGCGGCACT........................................................................................................	27	4	0.50	2	0	2	0	0	0	0
.......................................................................................................................................................................................................................................................TATTCAGTTGAGCGGCACTGTATATT.................................................................................................	26	2	0.50	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................AAACCTATTCAGTTGAGCGGCACTG.......................................................................................................	25	15	0.47	7	5	1	1	0	0	0
...................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCACTGTATA...................................................................................................	28	9	0.44	4	4	0	0	0	0	0
...................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCACTGTAT....................................................................................................	27	10	0.40	4	0	4	0	0	0	0
....................................................................................................................................................................................................................................................ACCTATTCAGTTGAGCGGCAC.........................................................................................................	21	16	0.38	6	2	4	0	0	0	0
................................................................................................................................................................................................................................................TCAAACCTATTCAGTTGAGCGGCACTG.......................................................................................................	27	15	0.33	5	1	3	1	0	0	0
....................................................................................................................................................................................................................................................ACCTATTCAGTTGAGCGGCACTGTATA...................................................................................................	27	9	0.33	3	3	0	0	0	0	0
....................................................................................................................................................................................................................................................ACCTATTCAGTTGAGCGGCACTG.......................................................................................................	23	15	0.33	5	5	0	0	0	0	0
.........................................................................................................................................................................................................................................AAAGAAGTCAAACCTATTCAGTTGA................................................................................................................	25	15	0.27	4	0	0	4	0	0	0
...............................................................................................................................................................................................................................................GTCAAACCTATTCAGTTGAGCGGCACC........................................................................................................	27	4	0.25	1	0	1	0	0	0	0
.............................................................................................................................................................................TAAAT---------CCGAGTGCTCGTTATGAAGA...................................................................................................................................................................	25	15	0.20	3	0	3	0	0	0	0
.................................................................................................................................................................................T---------CCGAGTGCTCGTTATGAAGAT-----ATTATG.......................................................................................................................................................	28	15	0.20	3	2	1	0	0	0	0
...................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGC...........................................................................................................	20	20	0.20	4	0	4	0	0	0	0
....................................................................................................................................................................................................................................................ACCTATTCAGTTGAGCGGCACTGT......................................................................................................	24	15	0.20	3	2	0	1	0	0	0
.................................................................................................TTGTA------------------TTTTATAAAGAATTGATCGTT.....................................................................................................................................................................................................................................	26	15	0.20	3	0	1	0	0	2	0
..................................................................................................................................................................................................................................................AAACCTATTCAGTTGAGCGGC...........................................................................................................	21	20	0.20	4	1	0	0	0	2	1
.........................................................................................................................................................................................................................................AAAGAAGTCAAACCTATTCAGTTGAG...............................................................................................................	26	15	0.20	3	1	1	0	0	1	0
.................................................................................................................................................................................................................................................CAAACCTATTCAGTTGAGCGG............................................................................................................	21	20	0.15	3	2	0	0	1	0	0
.......................................................................................................................................................................................................................................................TATTCAGTTGAGCGGCACTGTATAT..................................................................................................	25	7	0.14	1	0	1	0	0	0	0
.............................................................................................................................................................................TAAAT---------CCGAGTGCTCGTTATGAAGAT-----A............................................................................................................................................................	27	15	0.13	2	0	2	0	0	0	0
............................................................................................................................................................................TTAAAT---------CCGAGTGCTCGTTATGAAGA...................................................................................................................................................................	26	15	0.13	2	0	2	0	0	0	0
...........................................................................................................................................................................TTTAAAT---------CCGAGTGCTCGTTATGAAGA...................................................................................................................................................................	27	15	0.13	2	1	0	0	0	1	0
.............................................................................................................................................................................TAAAT---------CCGAGTGCTCGTTATGAA.....................................................................................................................................................................	23	15	0.13	2	1	1	0	0	0	0
......................................................................................................................................................................TTTGGTTTAAAT---------CCGAGTGCTCGT...........................................................................................................................................................................	24	15	0.13	2	1	1	0	0	0	0
.........................................................................................................................................................................................................................................AAAGAAGTCAAACCTATTCAGTTG.................................................................................................................	24	15	0.13	2	1	1	0	0	0	0
...............................................................................................................................................................................................................................................GTCAAACCTATTCAGTTGAGCGGC...........................................................................................................	24	15	0.13	2	1	1	0	0	0	0
....................................................................................................................................................................................................................................................ACCTATTCAGTTGAGCGGCACTGTA.....................................................................................................	25	15	0.13	2	2	0	0	0	0	0
.................................................................................................................................................................................................................................................CAAACCTATTCAGTTGAGCGGCACT........................................................................................................	25	16	0.13	2	0	2	0	0	0	0
.....................................................................................................................................................................................................................................................CCTATTCAGTTGAGCGGCACT........................................................................................................	21	16	0.13	2	1	0	0	0	1	0
................................................................................................................................................................................................................................................TCAAACCTATTCAGTTGAGCGGCACC........................................................................................................	26	16	0.13	2	0	2	0	0	0	0
...................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCACTGTAA....................................................................................................	27	17	0.12	2	2	0	0	0	0	0
......................................................................................................................................................................................................................................................CTATTCAGTTGAGCGGCACTGTATA...................................................................................................	25	9	0.11	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................AAACCTATTCAGTTGAGCGGCACTGTAT....................................................................................................	28	10	0.10	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGG............................................................................................................	19	20	0.10	2	0	0	0	0	2	0
................................................................................................................................................................................................................................................TCAAACCTATTCAGTTGAGCGGCA..........................................................................................................	24	20	0.10	2	2	0	0	0	0	0
....................................................................................................................................................................................................................................................ACCTATTCAGTTGAGCGGCACTGTAT....................................................................................................	26	10	0.10	1	0	1	0	0	0	0
.........................................................................ACCAAACCAAAAAAAAAAAAACTTT................................................................................................................................................................................................................................................................................	25	13	0.08	1	0	1	0	0	0	0
............................................................................................................................................................................................................................TC-TAAGTCTAAAAAAGAAGTCAAACC...........................................................................................................................	26	15	0.07	1	0	1	0	0	0	0
.................................................................................................TTGTA------------------TTTTATAAAGAATTGATCGTTT....................................................................................................................................................................................................................................	27	15	0.07	1	0	1	0	0	0	0
...............................................................................................................................................................................................GTGCTCGTTATGAAGAT-----ATTATGT......................................................................................................................................................	24	15	0.07	1	0	0	1	0	0	0
.............................................................................................................................................................................TAAAT---------CCGAGTGCTCGTTATGAAG....................................................................................................................................................................	24	15	0.07	1	0	1	0	0	0	0
.........................................................................................................................................................................................................TGAAGAT-----ATTATGTTC-TAAGG..............................................................................................................................................	21	15	0.07	1	0	0	0	0	1	0
......................................................................................................................................................................................................TTATGAAGAT-----ATTATGTTC-TAAGTCTAAA.........................................................................................................................................	29	15	0.07	1	1	0	0	0	0	0
.....AAT---AATGTAGGTTTTCAGCTA.....................................................................................................................................................................................................................................................................................................................................................	21	15	0.07	1	1	0	0	0	0	0
.....................TTCAGCTATGTTTTTGAAAAAA-AA----------ATA.......................................................................................................................................................................................................................................................................................................................	27	15	0.07	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCACTGC......................................................................................................	25	15	0.07	1	0	1	0	0	0	0
...............................................................................................................................AAGAATTGATCGTTTTACTTA--------AAA...................................................................................................................................................................................................................	24	15	0.07	1	1	0	0	0	0	0
...............................................................................................TTTTGTA------------------TTTTATAAAGAATTGATCGT......................................................................................................................................................................................................................................	27	15	0.07	1	0	1	0	0	0	0
............................................................................................................................................................................................CGAGTGCTCGTTATGAAGAT-----ATTATG.......................................................................................................................................................	26	15	0.07	1	1	0	0	0	0	0
............................................................................................................................................................................TTAAAT---------CCGAGTGCTCGTTA.........................................................................................................................................................................	20	15	0.07	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................AAGAAGTCAAACCTATTCAGTTGAGC..............................................................................................................	26	15	0.07	1	0	1	0	0	0	0
......................................................................................................................................................................TTTGGTTTAAAT---------CCGAGTGCTCGTC..........................................................................................................................................................................	25	15	0.07	1	0	1	0	0	0	0
.........................................................................................................................................................................................................TGAAGAT-----ATTATGTTC-TAAGTCTAAAAA.......................................................................................................................................	28	15	0.07	1	0	0	0	0	1	0
........................AGCTATGTTTTTGAAAAAA-AA----------ATA.......................................................................................................................................................................................................................................................................................................................	24	15	0.07	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................AAACCTATTCAGTTGAGCGGCACTGTA.....................................................................................................	27	15	0.07	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................GTCAAACCTATTCAGTTGAGCGG............................................................................................................	23	15	0.07	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................AAACCTATTCAGTTGAGCGGCACTGC......................................................................................................	26	15	0.07	1	0	1	0	0	0	0
...............................................................................................................................................................................AAT---------CCGAGTGCTCGTTATGAAGA...................................................................................................................................................................	23	15	0.07	1	0	1	0	0	0	0
.......................................................................................................................................................................................................TATGAAGAT-----ATTATGTTC-TAAGTC.............................................................................................................................................	24	15	0.07	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................TAAGTCTAAAAAAGAAGTCAAACCT..........................................................................................................................	25	15	0.07	1	0	1	0	0	0	0
......................................................................................................................................................................TTTGGTTTAAAT---------CCGAGTGCTCGTT..........................................................................................................................................................................	25	15	0.07	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................AGAAGTCAAACCTATTCAGTTGAGCGG............................................................................................................	27	15	0.07	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................AAAGAAGTCAAACCTATTCAGTTGAC...............................................................................................................	26	15	0.07	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................CCTATTCAGTTGAGCGGCACTGT......................................................................................................	23	15	0.07	1	0	1	0	0	0	0
...............................................................................................................................................................................................GTGCTCGTTATGAAGAT-----ATTATGTT.....................................................................................................................................................	25	15	0.07	1	0	0	0	0	1	0
.......................................................................................................................................................................TTGGTTTAAAT---------CCGAGTGCTCGTTA.........................................................................................................................................................................	25	15	0.07	1	0	1	0	0	0	0
....................................................................................................................................TTGATCGTTTTACTTA--------AAAAAAATTAT...........................................................................................................................................................................................................	27	15	0.07	1	1	0	0	0	0	0
..................GTTTTCAGCTATGTTTTTGA............................................................................................................................................................................................................................................................................................................................................	20	15	0.07	1	0	0	0	0	1	0
....AAAT---AATGTAGGTTTTCAGCTATGC..................................................................................................................................................................................................................................................................................................................................................	25	15	0.07	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................AGAAGTCAAACCTATTCAGTTGAGCGGC...........................................................................................................	28	15	0.07	1	0	1	0	0	0	0
.........................................................................................................................................................................GGTTTAAAT---------CCGAGTGCTCGTTATGAAGA...................................................................................................................................................................	29	15	0.07	1	1	0	0	0	0	0
........................................................................................................................................................................TGGTTTAAAT---------CCGAGTGCTCG............................................................................................................................................................................	21	15	0.07	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................TTC-TAAGTCTAAAAAAGAAGTCAAACC...........................................................................................................................	27	15	0.07	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................AAACCTATTCAGTTGAGCGGCACTGT......................................................................................................	26	15	0.07	1	1	0	0	0	0	0
............................................................................................AACTTTTGTA------------------TTTTATAAAGAATTGATC........................................................................................................................................................................................................................................	28	15	0.07	1	1	0	0	0	0	0
..............................................................................................................................AAAGAATTGATCGTTTTACTTA--------AAAA..................................................................................................................................................................................................................	26	15	0.07	1	1	0	0	0	0	0
................................................................................................TTTGTA------------------TTTTATAAAGAATTGATCGT......................................................................................................................................................................................................................................	26	15	0.07	1	0	1	0	0	0	0
......................................................................................................................................................................TTTGGTTTAAAT---------CCGAGTGCTCGTTATG.......................................................................................................................................................................	28	15	0.07	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................AACCTATTCAGTTGAGCGGCACTGTT.....................................................................................................	26	15	0.07	1	0	1	0	0	0	0
...................................................................................................GTA------------------TTTTATAAAGAATTGATCGTTT....................................................................................................................................................................................................................................	25	15	0.07	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................C-TAAGTCTAAAAAAGAAGTCAAACC...........................................................................................................................	25	15	0.07	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................AAAGAAGTCAAACCTATTCAGTTGAGCG.............................................................................................................	28	15	0.07	1	1	0	0	0	0	0
.......................................................................................................................................................................TTGGTTTAAAT---------CCGAGTGCTCGTTATG.......................................................................................................................................................................	27	15	0.07	1	0	1	0	0	0	0
..............................................................................................................................AAAGAATTGATCGTTTTACTTA--------AAAAA.................................................................................................................................................................................................................	27	15	0.07	1	1	0	0	0	0	0
........................................................................................................................................................................................................................ATGTTC-TAAGTCTAAAAAAGA....................................................................................................................................	21	15	0.07	1	0	0	0	0	0	1
...................................................................................................................................................................................................TCGTTATGAAGAT-----ATTATGTTC-TAAGTC.............................................................................................................................................	28	15	0.07	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................CAAACCTATTCAGTTGAGCGGCACTG.......................................................................................................	26	15	0.07	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................TATGTTC-TAAGTCTAAAAAAGAAGTCA...............................................................................................................................	27	15	0.07	1	0	0	0	0	1	0
...............................................................................................................................................................................................GTGCTCGTTATGAAGAT-----A............................................................................................................................................................	18	15	0.07	1	0	1	0	0	0	0
.....................................................................................................................................................................ATTTGGTTTAAAT---------CCGAGTGCTCGTTA.........................................................................................................................................................................	27	15	0.07	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................TAAGTCTAAAAAAGAAGTCAAACCTAT........................................................................................................................	27	15	0.07	1	0	0	1	0	0	0
......................................................................................................................................................................................................................................................CTATTCAGTTGAGCGGCAC.........................................................................................................	19	16	0.06	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................AAACCTATTCAGTTGAGCGGCACC........................................................................................................	24	16	0.06	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................TATTCAGTTGAGCGGCACT........................................................................................................	19	16	0.06	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................CTATTCAGTTGAGCGGCACT........................................................................................................	20	16	0.06	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................ACCTATTCAGTTGAGCGGCACT........................................................................................................	22	16	0.06	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................CAAACCTATTCAGTTGAGCGGCACC........................................................................................................	25	16	0.06	1	0	1	0	0	0	0
...........................................................................CAAACCAAAAAAAAAAAA.....................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................AAACCTATTCAGTTGAGCGGCA..........................................................................................................	22	20	0.05	1	0	0	0	0	1	0

droBip1

CCAAAAAA---AGCGCGCGCATTT-ACAGAATTTCAAGA----TCAAAGCAAAATTCCAAAT-----------------------AACCGTTGACTTTTTCCCGCTACTTTTTTCTT-------GCAAATAATGAGTAAATGAATGAA--------GAATAAAA--TTAAAAATTAAATAGAAAAAAAAACCA-ATTGGAACAAAGAT-----ATAGTGAAA-AATGTAAGAACAATTTTTCAAACCTATTCAGTTGAGCGGCACTGTATGTTGTTTCT---T---------AAATATAATTTTCAAATTTT-------ACAATCAACAAAGGAAAAAGATGCTCCGGCTCTAAAGAGGAAAAGATAA--	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CCAAAAAAA--AATGCAGCCATTTTGTTATGTTTTTGAAAAAA-TA----------ATAAAAATAATATAACAACAAACCCGACAAGACACAATTTTTATTA------------------TTTCACAAAAGACAGTTTTCTTTATACA--------AAAAAATTTATTTCGATCAAAT---------CGGAGGGCTTGTTGCAGAGAT-----ACACCGTTT-CAAACTTAAAAGAAAAGTCAAACCTATTCAGTTGAGCGGCACTGTATTTCAAT---------------------------------------------------------------------------------------------C	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AAGAAAAATTAAATAAGGAATAAATAATATGTTTTTGAAAAA----------------------------------------------------CCTTCTTC--------------AGCATTTTATTATAAAATGATTCAAGAGTTAA--------AGAAAA-AAAAATTATGGAAAT---------CGGTACACTGGTTTAGGAATT-----ATAGACAAATTACTTCCTCT-AAGATCATGAACCTATTCAGTTGAGCGGCAGTGTATTATT--CTA---A---------ATCTGT----------T-TTTC-----------------------------------------------------AGG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TTGATTT------------------------------------------------------------------------------------------TTGTTTTTTATTGCTTCCAT-------GCTATTAACCGGTTT------------------------------------------------------------------------------------TTAAAATT------------------------AAA--TGTCTTGCTTATTATATGT-------------CTATAT----------CCTTGCAGAAGCCAATCATTCAAAGAAGATGATG----GGACCTGGAAAGGTAATGATGATG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CCAAAAAT---AATGTAGGTTTTCAGCTATGTTTTTGAAAAAA-AG----------ATAAAAA-AATATAAAAACCAAACCAAAAA-AAAAAAACTTTTGTA------------------TTTTATAAAGAATTGATCGTTTTACTTA--------AAAAAATTTATTTGGTTTAAAT---------CCGAGTGCTCGTTATGAAGAT-----ATTATGTTC-TAAGTCTAAA-AAGAAGTCAAACCTATTCAGTTGAGCGGCAGTGCCTATAATC-------------------------------------------------------------------------------------------ATT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------TATTGCAGAAGTCAATCATTCAAAGAGGATGATG----GTACTTGGAAAGGTAACGATGACG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTGCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCCAATCCTTTAAAGAAGATGATG----GAACCTGGAAAGGTAATGATGATG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TTATTGAAA--ACTGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATACAATTAA--GGTCTTGTTTACAATATGT-------------ACTTAT----------ACTTGCAGAAGCCAATCCTTTAAAGAAGATGATG----GGACATGGAAAGGTAATGATGACG	Size	Hit Count	Total Norm	Total
No Reads

dm3

CCAAAAAAAGTAATGACGATTTTTTGTTATGTTTTTGAAAAAA-AA----------ATAAAAATGATATAAAAACAAATTTAAGAGATCAGAAACTTTGCTA------------------TTAAACAAATGACTGATCTATTCATACA--------TAAAAATTTATTTCGCTTAAAT---------TGGATTGCATATAACCTAGTT-----ACAACGGTT-CAAACCTAAACAAATAGTCAAACCTATTCAGTTGAACGGCACTGTATTTGAATATT---C---------TAATGT----------CTT----------------------------------------------------------T	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
......................................................................................................................................................................................................................................................................CACTGTATTTGAATATT---C---------T.............................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................CACTGTATTTGAATATT---C---------..............................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................ATCTATTCATACA--------TAAAAATTTAT...........................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................TGAACGGCACTGTATTTGAATA.............................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..................................................................TATAAAAACAAATTTAAGAGATCAG.......................................................................................................................................................................................................................................................................................	25	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................TTAAGAGATCAGAAACTTTGCTA------------------TT........................................................................................................................................................................................................................................................	25	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................TTTAAGAGATCAGAAACTTTGCTA------------------..........................................................................................................................................................................................................................................................	24	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................TAGTCAAACCTATTCAGTTGA................................................................................................................	21	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................TTAAGAGATCAGAAACTTTGC..............................................................................................................................................................................................................................................................................	21	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................TAAGAGATCAGAAACTTTGCT.............................................................................................................................................................................................................................................................................	21	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................AGAGATCAGAAACTTTGCTA------------------T.........................................................................................................................................................................................................................................................	21	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................GAGATCAGAAACTTTGCTA------------------TT........................................................................................................................................................................................................................................................	21	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................AAATTTATTTCGCTTACG.................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TTT--------------------------------------------------------------------------------------------------------------------------------------------ATACA--------ATAACATTTATTTCGCTTAAAT---------TGGAGTTCCCTTTATGGAGATTCGAAACAACGTTT-CGAAAATTGA-AAAATGTTAAAGCTATTCAGTTGAGCGGCACTGTACA---------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........................................................................................................................................................................................................................GTTT-CGAAAATTGA-A.......................................................................................................................................	15	5	0.80	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0

droSec2

TTT--------------------------------------------------------------------------------------------------------------------------------------------ATACA--------ATAAAATTTATTTCGCTTAAAT---------TGGAGTTCCCTTTATGGAGAT-----AAAACGTTT-CGAAAATTGA-AAAATGTTAAAGATATTCTGTTGAGCGGCACTGTACACTTTT----------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

TTGCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTCAATCATTCAAAGAAGATGATG----GGACATGGAAAGGCAATGATGATG

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

CCAAAAAA-----TGCCAATTTTTTGT--TGTTTTTAAAAAAA-TA----------TCAAAACTCCTTTAATAAAGAAACTAGCAGAACCAAAACTTTGCTA------------------TTTTAAAAATGAC----------------------------------------------------------A-----------TAGAT--------AGGTTT-TGAAAATTAA-AAAAACTCAAACCTATTCAGTTGAGCGGCACTGTATGTATTTTTT-------------TTAAAC----------TGTATCAACAGACGG----------------------------------------------T	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dpe_1357

scaffold_3:1099717-1099867 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-12.0	-11.4