ID:

dpe_1350

 Coordinate:

scaffold_3:818740-818890 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dper\GL21964-cds]; exon [dper_GLEANR_4055:2]; intron [Dper\GL21964-in]

Repeatable elements

NameClassFamilyStrand
Nobel_I-intLTRPao+
mature
star
  1. scaffold_55:20632-20657 +
  2. scaffold_55:24824-24849 +
  3. scaffold_144:78407-78432 +
  4. scaffold_2075:4188-4213 +
  5. scaffold_71:276286-276311 +
  6. scaffold_2:55353-55378 +
  7. dpe_1350  scaffold_3:818847-818872 +
  8. scaffold_79:169757-169782 +
  9. scaffold_54:263943-263968 +
  10. scaffold_54:355047-355072 +
  11. scaffold_878:5086-5111 +
  12. scaffold_109:82390-82415 +
  13. scaffold_193:41826-41851 +
  14. scaffold_2859:2689-2714 +
  15. scaffold_1011:1397-1422 +
  16. scaffold_1011:6694-6719 +
  17. scaffold_1441:844-869 +
  18. scaffold_1898:3126-3151 +
  19. scaffold_4881:1085-1110 +
  20. scaffold_6111:378-403 +
  21. scaffold_78:252111-252136 +
  22. scaffold_43:121288-121313 +
  23. scaffold_19:5331-5356 +
  24. scaffold_878:4032-4057 +
  25. scaffold_96:36241-36266 +
  26. scaffold_1347:289-314 +
  27. scaffold_1712:1100-1125 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATGTTAAAAAGATTTATCGCCAAGTGATGGTGAATGAAGCTGATCAGCAGTTTCAGCTCATATTGTGGAGAAGAGACCTATCTGAATCCTTGAGATTATACAAGCTCAACACTATAACCTATGGGACTGGACCAGCTACATTCTTAGATATCCGGTGTTTGAAAAGGTTGAGTGAGTCTGCGAAGCACTCATTCACCAAAGCTGCTAAAGTTATTGGGTCAGACTTTTACGTCGGTGACTTCTTCGGGAAG
*********************************************************************************************************....((((.((((((..((.((((((....(((......)))...)))))).)).....)))))))))).........******************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V057
head
 V111
male body		 M021
embryo
 V042
embryo
.........................................................................................................TCAACACTATAACCTATGGGACTGG......................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0
.........................................................................................................TCAACACTATAACCTATGGGACTGGAC....................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
.........................................................................................................TCAACACTATAACCTATGGGACTGGAA....................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0
.........................................................................................................TCAACACTATAACCTATGGGACTGGA........................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................................................................................................GTTGACTTCTTCGGGACG 18 2 2 0.50 1 0 1 0 0 0
.............................................................................................................................................................TTTGAAAAGGTTGAGTGAGTCTGCGA.................................................................... 26 0 20 0.45 9 8 0 1 0 0
.............................................................................................................................................................TTTGAAAAGGTTGAGTGAGTCTGCG..................................................................... 25 0 20 0.15 3 3 0 0 0 0
................................................................GCGGAGAAGAGGCCTATGTG....................................................................................................................................................................... 20 3 10 0.10 1 0 1 0 0 0
...............................................................................................GTATACTAGCACAACACTA......................................................................................................................................... 19 3 13 0.08 1 0 1 0 0 0
.....................................................................................................................................................ATCCGGTGTTTGAAAAGGTTG................................................................................. 21 0 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................CCGGTGTTTGAAAAGGTTGAGT.............................................................................. 22 0 20 0.05 1 0 0 0 0 1
..................................................................................................................................................................AAAGGTTGAGTGAGTCTGC...................................................................... 19 0 20 0.05 1 0 0 1 0 0
........................................................................................................................................................CGGTGTTTGAAAAGGTTGAG............................................................................... 20 0 20 0.05 1 0 0 1 0 0
................................................................................................................................................................GAAAAGGTTGAGTGAGTCTGC...................................................................... 21 0 20 0.05 1 0 1 0 0 0
...................................................................................................................AACCTATGGGACTGGACCA..................................................................................................................... 19 0 20 0.05 1 0 0 0 1 0
........................................................................................................................................................CGGTGTTTGAAAAGGTTGAGTGAGT.......................................................................... 25 0 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

TACAATTTTTCTAAATAGCGGTTCACTACCACTTACTTCGACTAGTCGTCAAAGTCGAGTATAACACCTCTTCTCTGGATAGACTTAGGAACTCTAATATGTTCGAGTTGTGATATTGGATACCCTGACCTGGTCGATGTAAGAATCTATAGGCCACAAACTTTTCCAACTCACTCAGACGCTTCGTGAGTAAGTGGTTTCGACGATTTCAATAACCCAGTCTGAAAATGCAGCCACTGAAGAAGCCCTTC
********************************************************************....((((.((((((..((.((((((....(((......)))...)))))).)).....)))))))))).........********************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M021
embryo
 M042
female body
 V111
male body
................AGCAGTTCACTACCATTTACTTCGTCT................................................................................................................................................................................................................ 27 3 5 0.20 1 1 0 0
...................................................................................................TATTCGAGTTGTGGTATTAG.................................................................................................................................... 20 3 10 0.10 1 0 0 1
................................................................................................................................CCAGGTCGATGGAAGAATT........................................................................................................ 19 3 12 0.08 1 0 1 0
......................................................................................................................................................AGGCCACAAACTTTTCCAACTCACTCAGA........................................................................ 29 0 20 0.05 1 0 1 0
....................................................................................................................................................................ACCAACTCACTCAGACGCTT................................................................... 20 1 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_3:818690-818940 + dpe_1350 ATGTTAAAAAGATTTATCGCCAAGTGATGGTGAATGAAGCTGATCAG-------CAGTTTCAGCTCATATTGTGGAGAAGAGACCTATCTGAATCCTTGAGATTATACAAGCTCAACACTATAACCTA-TGGGACTGGACCAGCTACATTCTTAGATATCCGG-TGTTTGAAAAGGTTGAGTGAGTCTG-CGAAGCACTCATTCACCAAAGCTGCTAAAGTTATTGGGTCAGACTTTTACGTCGGTGACTT--CTT--CGGGAAG
dp5 Unknown_group_39:97847-98097 + ATGTTAAAAAGATATATCGCCAAGTGATGGTGAATGAAGCTGATCAG-------CAGTTTCAGCTCATATTGTGGAGAAGAGACCTATCTGAATCCTTGAGATTATACAAGCTCAACACTATAACCTA-TGGGACTGGACCAGCCCCATTCTTAGATATCCGG-TGTTTGAAAAGGTTGAGTGAGTCTG-CGAAGCACTCATTCCCCAAAGCTGCTAAAGTTATTGGCTCAGACTTTTACGTCGGTGACTT--CTT--CGGGAAG
droWil2 scf2_1100000004967:2977331-2977574 - ACGTCAAGAAAATGTATCGTCAAGTAATGGTACATGAAGCTGATCGA-------GATTTCCAGCTCATATTGTGGAGAAAAAACCCAGATGATTCTTTAAAAGTGATCAGGTTAAACACTGTTACGTA-TGGTACGGCGCCAGCTCCGTTTCTGGCAATACGG-TGTTTGACAAAGCTGGGTGAGATGA-TTGAATTGTCACATCCAAAAGCTGCTGAAGTTATCAGGCACGATTTTTAAGTTGATGACAT--GTT---------
droVir3 scaffold_12723:167512-167748 - ACATCAGAAAGATGTAT----AGGTCATGGTGCATGAAGCAGATCGA-------GACTTCCTGCTCGTACTGTGGGGAAAGAACCCATCTGACACATTGAGGTCCTTTAGGTTAAATATCGTAACTAA-CGGCACTGCGCCTGTCTCGTTTTTGGCAATACGG-TGTTTAACAAAGCTAAGTGAGATGA-GTGTGTCATCACACCCTAAAGCTGCTGGCGTTATCAGGCACGAATTTTATGCCGATGATT-----T---------
droMoj3 scaffold_4011:1312-1555 + ATATTGTGAAGATGTTTAGACAAATTTTGGTTGCACCTAAACATCAG-------GACTTTCAACGAATATTATGGAGAGAACATCCATCAGCACCATTGAAACACTTCAAACTCTGCACAGTTACATA-CGGGACTGCGTCTGCGCCATTCCTCGCAGTCCGGGTGTTAGAACAACTTGCCAAGGACCA-C-GAGCATGAGTTTCCTAGAGCAGCTAAGATATTACTTAAGGATTTCTACGTGGACGATGT--ATT---------
droGri2 scaffold_15116:1679846-1680089 - ATGTAACCAAGATGTACAGGCAAGTAAATGTTGATTTAAATGATCGC-------AAATACCAGTACATACTCTGGCGAGCTCTTCCAGATGAACCACTTCGCACTTATCAACTCAACACGGTTACATA-TGGAACAGCCTCAGCGCCATACTTAGCCATACGC-AGCCTGCATTTTTTG-GCAAATCTGTGTCGAACTGAGTATCCAATCGGTGCTGCAGTCATTGAATCGTCGTTCTATGTAGATGACCT--GTT---------
droAna3 scaffold_12926:253739-253982 - ACATAAAAAAGATGTATCGTCAAGTGATGGTAAATGAAGCAGATCAA-------CGATACCAGTTGATAGTGTGGAGAAAAGACCCGTCTGAGTCCTTGAAATTGTGCAAGCTCAACACCGTTACTTA-TGGCACTGCACCAGCCCCATTCCTGGCCATAAGG-TGTTTGAAGAGGTTGAGTGAATCCG-CGAAACATACATTCCCTCGAGCTGCTAAAGTTATTGGGTCTGACTTTTACGTCGACGACAT--GTT---------
droBip1 scf7180000394039:686-929 - ACATAAAAAAGATGTATCGCCAAGTAATGGTAAATGAAGCCGATAGG-------CGATACCAGTTGATAGTGTGGAGGAAAGACCCATCAGAGTCCTTGAAACTGTGCAAGCTCAACACCGTTACATA-TGGCACTGCGCCAGCCCCATTCCTGGCCATAAGG-TGTTTGAAGAGGTTGAGTGAATCTG-TGAAAAATACATTCCCCCGAGCTGCCGAAGTTATTGGGTCCGACTTTTACGTCGACGACAT--GTT---------
droKik1 scf7180000302132:7616-7854 - ATGTGAATAAGATGTATCGCCAAGTAATGGTTCATGAAGCGGATAGG-------CAGTTTCAACTCATAGTGTGGAGAAGAGACCCCTCTGAATCCTTAAGATTATATAAGCTCAACACCGTAACATA-TGGTACTGGACAAGCCCCTTTTCTGGCTATTCGG-TGTTTAGAAAGGTTAAGTGAATCTG-CGAAACTTTCATTCCCTAGAGCTGCCGACGTAATTGGATCCGATTTTTACGTCGATGAC----------------
droFic1 scf7180000451682:11062-11299 - ATGTTAAA-AAATGTATCGCCAAGTAATGGTAAATGAAGCGGATAGG-------CCATTTCAACTCATAGTGTGGAGAAGAGACCCCTCAGAATCCTTGAGATTGTACCAGCTCAACACCATAACATAGTGGAACTGGCCCAGCTCCATATCTAGCGATTCGG-TGTTTAAAAAGGTTGAGTGAATCTG-CTAAATTTTCATTCCCTAAAGCTGCTGAAGTTATTGGATCCGACTTTTACGTCGATGA-----------------
droEle1 scf7180000491093:5133-5387 - ACGTCAAAAAGATGTATCGCCAAGTGATGGTGGACGAAGCTGATCGT-------AACTTCCAGCTCATAGTATGGAGACGAGATCCTTCTGAGTCCCTGAAAATCTTTAAGTTGAACACCGTTACATA-TGGAACTTCGCCAGCACCCTTTTTGGCGATTCGG-TGTTTAATGCGGCTAGGAGAGATGG-CGCAAGCAACTCATCCAAAAGCCGCAAAGGTTATTCAGAATGATTTTTATGTTGACGTGATTTGTTTTCGAGACA
droRho1 scf7180000761063:4174-4411 + ATGTAATGAAAATGTATCGCCAAGTGATGGTGAATGAAGCAGATAGC-------CAGTTTCAACTTATAGTGTGGAGAAGAGACCCATCTGAGTCCTTGAGATTATACAAGCTCAACACCGTAACATA-TGGTACTGGACCAGCCCCGTTCTTGGCTATTCGG-TGCTTAAAAAGGTTAAGTGAGTCTG-CCAAACATTCTTTTCCTAGAGCTGCTAAAGTGATTGGATCCGACTTTTATGTCGATGA-----------------
droBia1 scf7180000302036:31213-31431 - ATGTAAAGAAAGTGTTTCGTCAAGTGATTATAATTGAAGCGGAAAGG-------CAGTTTCATCTCATAGGGT------------------------TAAGGTTATATAAGCTCAACACTGTAACATA-CGTTACTAGACCAGCCCC-TTTCTGGCTATTCGG-TGTTATAAAATGTTAAGTGAGTCTA-CCAAATTTTCTTTTCCTAGAGCTGCGGAAATTATTGGTTCCGACTTTTATGTCGATGACAT--GTT---------
droTak1 scf7180000414385:15783-16026 + ATGTAAAGAAAATGTATCGCCAAGTGATGGTAAATGAAGCGGATAGG-------CAGTTTCAACTTATAGTGTGGAGAAGAGACCCCTCTGAGTCCTTGAGATTATATAAGCTCAACACCGTAACATA-TGGGACTGGACCAGCCCCATTTCTGGCAATTCGG-TGTTTAAAAAGGTTAAGCGAGTCTG-CCAAACTTTCTTTTCCTAGAGCTGCTGAAGTTATTGGATCCGACTTTTATGTCGATGACAT--GTT---------
droEug1 scf7180000408850:53337-53580 + ACATTAAAAAGATGTACCGCCAAGTGATGGTCGTCGAAGCTGACCGA-------AACTTCCAGCTCATAGTGTGGAGGCGAGATCCCTCTGAGTCTCTGGAGATCTTCAAGTTGAATACCGTAACATA-TGGAACTTCGCCAGCTCCGTTTATGGCGATCCGG-TGTTTAATGCAGCTTGGAGAAATGG-CGCAAGCTAAGTATCCAAATGCTGCGAAGGTCATTCAGAAAGATTTTTATGTTGACGATCT--GTT---------
dm3 chr2RHet:2203871-2204088 - ATGTAAA-AAAATGTATCGTCAAGTGATGGTTAATAAAGCGGATAGGTTTGGATAAGTTTTAACTTA----GTAGAGTAGAGACCCCTCTGAATCCTTAAAAGTATAGAAGCCTAACA------CATT-CGGTACTGGACCAGCCCCATTTCTGGATATTCGG-TGTTTAAAAAGGTTGAGTA----TG-C-AACTTTTCATTCCCTAGAGCTGCCGTCGTATTTGGATCCGATTTT----------------------------
droSim2 node_73632:4-197 - ATGTAAAAAAGATGTATCGCCAAGTAATGGTTAATGAAGCGGATAGG-------AAGTTTCAACTCATAGTGTGGAGGAGAGACCCCTCTGAATCCTTGAGATTATACAAGCTCAACACCGTCACATA-TGGTACTGGACCAGCCCCATTTCTGGCTATTCGG-TGTTTAAAGAGGTTGAGTGAATCTG-CTAAATGTTCATTC-------------------------------------------------------------
droSec2 scaffold_99:79858-80055 + A---------------------AGTGATGGTTAATATGGCGGAAAGG-------AAGTTTCAACTCATAGTGAGGA---GAGACCCCTATGAATCCTTATGATTATACAAGCCCAACACCGT-----A-TGGTACTGCACCAGCCCCATTTCTGGGTATACGG-TGTTTAAAAAGGTTGAGTGAGC-------------CATTTCCTAGAGCTGCCGACGTCATTGGATCCGACTTTTAAGTCGATGAC----------------
droYak3 v2_chrUn_006:39442-39685 - ATGTAAAAAAGATGTATCGCCAAGTAATGGTTAATGAAGCGGATAGG-------AAGTTTCAACTCATAGTGTGGAGGAGAGACCCCTCTGAATCCTTGAGATTATACAAGCTCAACACCGTCACATA-TGGTACTGGACCAGCCCCATTTCTGGCTATTCGG-TGTTTAAAGAGGTTGAGTGAATCTG-CTAAATGTTCATTCCCTAGAGCTGCCGACGTGATTGGATCCGATTTTTACGTCGATGACAT--GTT---------
droEre2 scaffold_4756:64056-64288 - ATGTAAAAAAGATAAATCGTCAAGTAATGGTTCATAAAGTGGATAGG-------AAGTTTCAACTCATAGTGTGGAGCA-----------GAATCCTTGAGATTATACTACCTCATCACCGTCACAAA-TGGTAATGGACTAGCCCCATTTATGGCTATTCGG-TGTTTGAAAAGGTTGAGTGAATCTG-CAAGATTTTCATTCCATAGAGCTGGCGACGGAATTGGATCCGATTTTTACGTCGATGACAT--GTT---------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
ATGTTAAAAAGATTTATCGCCAAGTGATGGTGAATGAAGCTGATCAG-------CAGTTTCAGCTCATATTGTGGAGAAGAGACCTATCTGAATCCTTGAGATTATACAAGCTCAACACTATAACCTA-TGGGACTGGACCAGCTACATTCTTAGATATCCGG-TGTTTGAAAAGGTTGAGTGAGTCTG-CGAAGCACTCATTCACCAAAGCTGCTAAAGTTATTGGGTCAGACTTTTACGTCGGTGACTT--CTT--CGGGAAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................................................................TCAACACTATAACCTA-TGGGACTGG...............................................................................................................................2512.002020000
................................................................................................................TCAACACTATAACCTA-TGGGACTGGAC.............................................................................................................................2711.001010000
................................................................................................................TCAACACTATAACCTA-TGGGACTGGAA.............................................................................................................................2711.001010000
................................................................................................................TCAACACTATAACCTA-TGGGACTGGA..............................................................................................................................2611.001010000
......................................................................................................................................................................TTTGAAAAGGTTGAGTGAGTCTG-CGA........................................................................26200.459080001
......................................................................................................................................................................TTTGAAAAGGTTGAGTGAGTCTG-CG.........................................................................25200.153030000
.............................................................................................................................................................ATCCGG-TGTTTGAAAAGGTTG......................................................................................21200.051010000
...............................................................................................................................................................CCGG-TGTTTGAAAAGGTTGAGT...................................................................................22200.051001000
...........................................................................................................................................................................AAAGGTTGAGTGAGTCTG-C..........................................................................19200.051000001
................................................................................................................................................................CGG-TGTTTGAAAAGGTTGAG....................................................................................20200.051000001
.........................................................................................................................................................................GAAAAGGTTGAGTGAGTCTG-C..........................................................................21200.051000010
..........................................................................................................................AACCTA-TGGGACTGGACCA...........................................................................................................................19200.051100000
................................................................................................................................................................CGG-TGTTTGAAAAGGTTGAGTGAGT...............................................................................25200.051010000
dp5
ATGTTAAAAAGATATATCGCCAAGTGATGGTGAATGAAGCTGATCAG-------CAGTTTCAGCTCATATTGTGGAGAAGAGACCTATCTGAATCCTTGAGATTATACAAGCTCAACACTATAACCTA-TGGGACTGGACCAGCCCCATTCTTAGATATCCGG-TGTTTGAAAAGGTTGAGTGAGTCTG-CGAAGCACTCATTCCCCAAAGCTGCTAAAGTTATTGGCTCAGACTTTTACGTCGGTGACTT--CTT--CGGGAAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................G-TGTTTGAAAAGGTTGAGTGAGTC..............................................................................241114.451590135403012410
..................................................................................................................................................................G-TGTTTGAAAAGGTTGAGTGAGT...............................................................................231110.0011009720106130
..................................................................................................................................................................G-TGTTTGAAAAGGTTGAGTGAG................................................................................22114.825304600003310
.........................................................................................................................TAACCTA-TGGGACTGGACCAGC.........................................................................................................................22112.452701900100430
..................................................................................................................................................................G-TGTTTGAAAAGGTTGAGTGA.................................................................................21112.362601710303200
......................................................................................................................................................................TTTGAAAAGGTTGAGTGAGTCTG-...........................................................................23112.272502200001200
.........................................................................................................................TAACCTA-TGGGACTGGACCAGCC........................................................................................................................23112.182402220000000
..................................................................................................................................................................G-TGTTTGAAAAGGTTGAGTG..................................................................................20112.002201800003100
......................................................................................................................................................................TTTGAAAAGGTTGAGTGAGTCTG-C..........................................................................24111.912101700102010
....................................................................................................................................................................TGTTTGAAAAGGTTGAGTGAGTC..............................................................................23111.731901710100000
.........................................................................................................................TAACCTA-TGGGACTGGACCAG..........................................................................................................................21121.581901600100020
.........................................................................................................................TAACCTA-TGGGACTGGACCAGCCC.......................................................................................................................24111.551701420000100
.........................................................................................................................TAACCTA-TGGGACTGGACCAGCCCC......................................................................................................................25111.551711600000000
.........................................................................................................................TAACCTA-TGGGACTGGACCAGCCCCAT....................................................................................................................27111.271401310000000
......................................................................................................................................................................TTTGAAAAGGTTGAGTGAGTCTG-CGA........................................................................26111.181301200001000
..............................TGAATGAAGCTGATCAG-------CAGTTTCAGC.........................................................................................................................................................................................................2721.0020000000020
.........................................................................................................................TAACCTA-TGGGACTGGACCAGCCCCA.....................................................................................................................26110.8290610100100
............................................................................................................................................................TATCCGG-TGTTTGAAAAGGTTGAG....................................................................................24110.8290000000450
............................................................................................................................................................................AAGGTTGAGTGAGTCTG-CGAAGC.....................................................................23110.7380510000110
.........................................................................................................................................................................GAAAAGGTTGAGTGAGTCTG-CGAAGC.....................................................................26110.7380300001220
......................................................................................................................................................................TTTGAAAAGGTTGAGTGAGTCT.............................................................................22110.7380710000000
..................................................................................................................................................................G-TGTTTGAAAAGGTTGAGTGAGTCTG-...........................................................................26110.7380500000210
....................................................................................................................................................................TGTTTGAAAAGGTTGAGTGAG................................................................................21110.6470500001010
....................................................................................................................................................................TGTTTGAAAAGGTTGAGTGAGT...............................................................................22110.6470700000000
.......................................................................................................................................................................TTGAAAAGGTTGAGTGAGTCTG-...........................................................................22110.5560600000000
..............................................................................................................................................................TCCGG-TGTTTGAAAAGGTTGAGTGAGT...............................................................................27110.5560410001000
..................................................................................................................................................................G-TGTTTGAAAAGGTTGAGTGAGA...............................................................................23110.5560600000000
......................................................................................................................................................................TTTGAAAAGGTTGAGTGAGTC..............................................................................21110.5560600000000
......................................................................................................................................................................TTTGAAAAGGTTGAGTGAGTCTG-CG.........................................................................25110.5560500000100
..............................................................................................................................................................TCCGG-TGTTTGAAAAGGTTGAGTGA.................................................................................25110.5560400000020
.......................................................................................................................................................................TTGAAAAGGTTGAGTGAGTCTG-C..........................................................................23110.5560500001000
.........................................................................................................TACAAGCTCAACACTATAACCTA-TGG.....................................................................................................................................2620.5010100000000
...........................................................TCAGCTCATATTGTGGAGAAGAG.......................................................................................................................................................................................2320.5010000000010
.........................................................................................TGAATCCTTGAGATTATACAAGCTC.......................................................................................................................................................25120.5060420000000
...........................................................TCAGCTCATATTGTGGAGAAGAGACC....................................................................................................................................................................................2620.5010100000000
.......................................................................................................................................................................TTGAAAAGGTTGAGTGAGTCTG-CG.........................................................................24110.4550500000000
..............................................................................................................................................................TCCGG-TGTTTGAAAAGGTTGAGTGAG................................................................................26110.4550100100210
..................................................................................................................................................................G-TGTTTGAAAAGGTTGAG....................................................................................18120.4250400000010
.........................................................................................................................TAACCTA-TGGGACTGGACCA...........................................................................................................................20120.4250500000000
................................................................................................................................................................CGG-TGTTTGAAAAGGTTGAGTGAGTC..............................................................................26110.3640400000000
........................................................................................................................................................................TGAAAAGGTTGAGTGAGTCTG-CGA........................................................................24110.3640000100030
.................................................................................................................................................................GG-TGTTTGAAAAGGTTGAGTGAG................................................................................23110.3640400000000
.......................................................................................................................................................................TTGAAAAGGTTGAGTGAGTCTG-CGA........................................................................25110.3640300001000
..........................................................................................GAATCCTTGAGATTATACAAGCT........................................................................................................................................................23120.3340400000000
..........................................................................................GAATCCTTGAGATTATACAAGCTC.......................................................................................................................................................24120.3340400000000
..........................................................................................GAATCCTTGAGATTATACAAGCTCA......................................................................................................................................................25120.3340301000000
............................................................................................................................................................TATCCGG-TGTTTGAAAAGGTTGA.....................................................................................23130.3140300000100
.........................................................................................................................................................................GAAAAGGTTGAGTGAGTCTG-CGAAG......................................................................25110.2730100000020
.............................................................................................................................................................................AGGTTGAGTGAGTCTG-CGAAG......................................................................21110.2730300000000
................................................................................................................................................................CGG-TGTTTGAAAAGGTTGAGTGAG................................................................................24110.2730300000000
.................................................................................................................................................................GG-TGTTTGAAAAGGTTGAGTGAGTC..............................................................................25110.2730300000000
........................................................................................................................................................................TGAAAAGGTTGAGTGAGTCTG-CGAAG......................................................................26110.2730300000000
........................................................................................................................................................................TGAAAAGGTTGAGTGAGTCTG-CG.........................................................................23110.2730300000000
..................................................................................................................................................................G-TGTTTGAAAAGGTTGAGTGAA................................................................................22110.2730300000000
................................................................................................................................................................CGG-TGTTTGAAAAGGTTGAGTGAGT...............................................................................25110.2730100001100
..................................................................................................................................................................G-TGTTTGAAAAGGTTGAGTGAGTCT.............................................................................25110.2730210000000
.......................................................................................................................................................................TTGAAAAGGTTGAGTGAGTCTG-CGAA.......................................................................26110.2730100000200
........................................................................................................................................................................TGAAAAGGTTGAGTGAGTCTG-CGAAGC.....................................................................27110.2730010000020
........................................................................................................................................................................TGAAAAGGTTGAGTGAGTCTG-...........................................................................21110.2730300000000
..................................................................................................................................................................G-TGTTTGAAAAGGTTGAGTGAGTCTA-...........................................................................26110.2730100000200
..........................................................................................................................AACCTA-TGGGACTGGACCAG..........................................................................................................................20120.2530300000000
.........................................................................................TGAATCCTTGAGATTATACAAGCT........................................................................................................................................................24120.2530300000000
.........................................................................................TGAATCCTTGAGATTATACAAGCTCA......................................................................................................................................................26120.2530000000300
..........................................................................................GAATCCTTGAGATTATACAAGC.........................................................................................................................................................22120.2530300000000
..................................................................................................................................................................G-TGTTTGAAAAGGTTGAGT...................................................................................19120.2530300000000
..............................................................................................................................TA-TGGGACTGGACCAGCCCCATT...................................................................................................................23200.2040400000000
..................................................................................................................................................................G-TGTTTGAAAAGGTTGAGTGAGTCTG-C..........................................................................27110.1820200000000
..................................................................................................................................................................G-TGTTTGAAAAGGTTGAGTGG.................................................................................21110.1820100100000
...............................................................................................................................................................................GTTGAGTGAGTCTG-CGAAG......................................................................19110.1820200000000
............................................................................................................................CCTA-TGGGACTGGACCAGC.........................................................................................................................19110.1821100000000
...............................................................................................................................................................CCGG-TGTTTGAAAAGGTTGAGTGAG................................................................................25110.1820200000000
..........................................................................................................................AACCTA-TGGGACTGGACCAGCC........................................................................................................................22110.1820200000000
..........................................................................................................................................................................AAAAGGTTGAGTGAGTCTG-CGAAGC.....................................................................25110.1820100000010
........................................................................................................................................................................TGAAAAGGTTGAGTGAGTCTG-CGAA.......................................................................25110.1820000000200
.................................................................................................................................TGGGACTGGACCAGCCCCATTC..................................................................................................................22110.1820200000000
.....................................................................................................................................................................GTTTGAAAAGGTTGAGTGAGT...............................................................................21110.1820200000000
....................................................................................................................................................................TGTTTGAAAAGGTTGAGTGAGTCTG-...........................................................................25110.1820100000010
....................................................................................................................................................................TGTTTGAAAAGGTTGAGTG..................................................................................19110.1820200000000
..............................................................................................................................TA-TGGGACTGGACCAGCCCCATTC..................................................................................................................24110.1820200000000
.......................................................................................TCTGAATCCTTGAGATTATACAAGC.........................................................................................................................................................25120.1720110000000
..........................................................................................GAATCCTTGAGATTATACAAGCTCAACA...................................................................................................................................................28120.1720200000000
.................................................................................................................................TGGGACTGGACCAGCCCCATT...................................................................................................................21200.1530300000000
..................................................................................................................................................................G-TGTTTGAAAAGGTTGAGTGAGC...............................................................................23150.1320200000000
..............................................................................................................................TA-TGGGACTGGACCAGCCCC......................................................................................................................20200.1020200000000
..............................................................................................................................................................TCCGG-TGTTTGAAAAGGTTGAGT...................................................................................23110.0910010000000
.....................................................................................................................................................................GTTTGAAAAGGTTGAGTGAGTC..............................................................................22110.0910100000000
...........................................................................................................................ACCTA-TGGGACTGGACCAGCCC.......................................................................................................................22110.0910100000000
.................................................................................................................................................................GG-TGTTTGAAAAGGTTGAGTGAGT...............................................................................24110.0910100000000
..................................................................................................................................................................G-TGTTTGAAAAGGTTGAGTGAGAA..............................................................................24110.0910100000000
.................................................................................................................................................................GG-TGTTTGAAAAGGTTGAGTG..................................................................................21110.0910000001000
.........................................................................................................................TAACCTA-TGGGACTGGACCAGCCCCAA....................................................................................................................27110.0910100000000
..............................................................................................................................................................TCCGG-TGTTTGAAAAGGTTGAG....................................................................................22110.0910000000010
...............................................................................................................................A-TGGGACTGGACCAGCCCCATTC..................................................................................................................23110.0910100000000
.........................................................................................................................................................................GAAAAGGTTGAGTGAGTCTG-CGAA.......................................................................24110.0910100000000
.......................................................................................................................................................................TTGAAAAGGTTGAGTGAGTCTG-CGAAG......................................................................27110.0910100000000
..................................................................................................................................................................G-TGTTTGAAAAGGTTGAGTGC.................................................................................21110.0910100000000
.......................................................................................................................................TGGACCAGCCCCATTCTTAG..............................................................................................................20110.0910100000000
..............................................................................................................................................................TCCGG-TGTTTGAAAAGGTTGAGTG..................................................................................24110.0910100000000
.......................................................................................................................................................................TTGAAAAGGTTGAGTGAGTCTG-CGAAA......................................................................27110.0910100000000
............................................................................................................................CCTA-TGGGACTGGACCAGCCCCAT....................................................................................................................24110.0910100000000
.............................................................................................................................................................ATCCGG-TGTTTGAAAAGGTTGAG....................................................................................23110.0910100000000
.............................................................................................................................CTA-TGGGACTGGACCAGCCCCAT....................................................................................................................23110.0910100000000
........................................................................................................................................................................TGAAAAGGTTGAGTGAGTCTG-CGAAA......................................................................26110.0910100000000
............................................................................................................................................................TATCCGG-TGTTTGAAAAGGTTGAGT...................................................................................25110.0910100000000
....................................................................................................................................................................TGTTTGAAAAGGTTGAGTGAA................................................................................21110.0910100000000
............................................................................................................................................................TATCCGG-TGTTTGAAAAGGTTGAGTGA.................................................................................27110.0910100000000
..........................................................................................................................................................................AAAAGGTTGAGTGAGTCTG-CGAA.......................................................................23110.0910100000000
............................................................................................................................CCTA-TGGGACTGGACCAGCC........................................................................................................................20110.0910100000000
.................................................................................................................................TGGGACTGGACCAGCCCCATTCT.................................................................................................................23110.0910100000000
................................................................................................................................................................CGG-TGTTTGAAAAGGTTGAGTGAGTCT.............................................................................27110.0910100000000
...............................................................................................................................................................CCGG-TGTTTGAAAAGGTTGAGTGAGT...............................................................................26110.0910100000000
............................................................................................................................................................TATCCGG-TGTTTGAAAAGGTTGAGTG..................................................................................26110.0910100000000
..................................................................................................................................................................G-TGTTTGAAAAGGTTGAGTGAGTCAA-...........................................................................26110.0910100000000
.......................................................................................................................................................................TTGAAAAGGTTGAGTGAGTCT.............................................................................21110.0910100000000
........................................................................................................................................................................TGAAAAGGTTGAGTGAGTCTG-C..........................................................................22110.0910100000000
.................................................................................................................................................................GG-TGTTTGAAAAGGTTGAGTGA.................................................................................22110.0910100000000
..................................................................................................................................................................G-TGTTTGAAAAGGTTGAGTGAGAAA.............................................................................25110.0910100000000
....................................................................................................................................................................TGTTTGAAAAGGTTGAGTGAGTCT.............................................................................24110.0910010000000
..........................................................................................................................AACCTA-TGGGACTGGACCAGC.........................................................................................................................21110.0910100000000
..................................................................................................................................................................G-TGTTTGAAAAGGTTGAGTGT.................................................................................21110.0910100000000
..................................................................................................................................................................G-TGTTTGAAAAGGTTGAGTGAGTT..............................................................................24110.0910010000000
..........................................................................................................................................................................AAAAGGTTGAGTGAGTCTG-CGA........................................................................22110.0910100000000
................................................................................................................................................................CGG-TGTTTGAAAAGGTTGAGTGAGTA..............................................................................26110.0910100000000
...............................................................................................................................................................................GTTGAGTGAGTCTG-CGAAGC.....................................................................20110.0910100000000
.......................................................................................................................................................................TTGAAAAGGTTGAGTGAGT...............................................................................19110.0910100000000
......................................................................................................................................................................TTTGAAAAGGTTGAGTGAGTCTG-CGAAG......................................................................28110.0910100000000
................................................................................................................................................................CGG-TGTTTGAAAAGGTTGAGTGA.................................................................................23110.0910100000000
...........................................................................................................................ACCTA-TGGGACTGGACCAGCC........................................................................................................................21110.0910100000000
....................................................................................................................................................................TGTTTGAAAAGGTTGAGTGA.................................................................................20110.0910000001000
............................................................................................................................................................................AAGGTTGAGTGAGTCTG-CGA........................................................................20110.0910100000000
....................................................................................................................................................................TGTTTGAAAAGGTTGAGTGAGA...............................................................................22110.0910100000000
..........................................................................................................................AACCTA-TGGGACTGGACCAGCCC.......................................................................................................................23110.0910100000000
............................................................................................................................................................TATCCGG-TGTTTGAAAAGGTTGAGTGAG................................................................................28110.0910100000000
.......................................................................................................................................................................TTGAAAAGGTTGAGTGAGTC..............................................................................20110.0910000001000
......................................................................................................................................................................TTTGAAAAGGTTGAGTGAGTCTG-CGC........................................................................26110.0910100000000
.........................................................................................................................TAACCTA-TGGGACTGGACCAGCCCCT.....................................................................................................................26110.0910100000000
....................................................................................................................................................................TGTTTGAAAAGGTTGAGTGAGTCTG-C..........................................................................26110.0910100000000
..................................................................................................................................................................G-TGTTTGAAAAGGTTGAGTGAGTCA.............................................................................25110.0910000000100
.................................................................................................................................TGGGACTGGACCAGCCCCATTCTT................................................................................................................24110.0910100000000
............................................................................................................................................................................AAGGTTGAGTGAGTCTG-CGAAG......................................................................22110.0910100000000
...........................................................................................................................................................................AAAGGTTGAGTGAGTCTG-C..........................................................................19110.0910000100000
...............................................................................................................................................................CCGG-TGTTTGAAAAGGTTGAGTGA.................................................................................24110.0910100000000
.........................................................................................................................TAACCTA-TGGGACTGGACCAT..........................................................................................................................21120.0810100000000
.......................................................................................TCTGAATCCTTGAGATTATACAAG..........................................................................................................................................................24120.0810100000000
.......................................................................................TCTGAATCCTTGAGATTATACAAGCTCA......................................................................................................................................................28120.0810100000000
.........................................................................................................................TAACCTA-TGGGACTGGACCG...........................................................................................................................20120.0810000100000
..........................................................................................................................AACCTA-TGGGACTGGACCA...........................................................................................................................19120.0810100000000
..................................................................................................................................................................G-TGTTTGAAAAGGTTGAGA...................................................................................19120.0810100000000
...........................................................................................AATCCTTGAGATTATACAAGCTCAAC....................................................................................................................................................26120.0810100000000
........................................................................................CTGAATCCTTGAGATTATACAAGC.........................................................................................................................................................24120.0810100000000
.........................................................................................TGAATCCTTGAGATTATACAAG..........................................................................................................................................................22120.0810100000000
.......................................................................................TCTGAATCCTTGAGATTATACAAGCTC.......................................................................................................................................................27120.0810010000000
.........................................................................................TGAATCCTTGAGATTATACAAGCA........................................................................................................................................................24120.0810100000000
.......................................................................................TCTGAATCCTTGAGATTATACAAGCT........................................................................................................................................................26120.0811000000000
...........................................................................................AATCCTTGAGATTATACAAGCTC.......................................................................................................................................................23120.0810100000000
.........................................................................................TGAATCCTTGAGATTATACAAGCTCAA.....................................................................................................................................................27120.0810100000000
.........................................................................................TGAATCCTTGAGATTATACAAGC.........................................................................................................................................................23120.0810000000100
................................................................................................TTGAGATTATACAAGCTCAA.....................................................................................................................................................20130.0810100000000
.........................................................................................................................TAACCTA-TGGGACTGGACA............................................................................................................................19130.0810100000000
..............................................................................................CCTTGAGATTATACAAGCTC.......................................................................................................................................................20130.0810100000000
....................................................................................................................................................................TGTTTGAAAAGGTTGAGTGAGC...............................................................................22150.0710100000000
............................................................................................................................................................TATCCGG-TGTTTGAAAAGGTTG......................................................................................22160.0610100000000
............................................................................................................................................................TATCCGG-TGTTTGAAAAGGTT.......................................................................................21160.0610000000100
..............................................................................................................................TA-TGGGACTGGACCAGCCC.......................................................................................................................19200.0510100000000
.................................................................................................................................TGGGACTGGACCAGCCCCATA...................................................................................................................21200.0510100000000
..................................................................................................................................................................G-TGTTTGAAAAGGTTGAGTGAGTCTG-CA.........................................................................28200.0510000000100
...............................................................................................................................A-TGGGACTGGACCAGCCCCA.....................................................................................................................20200.0510100000000
..............................................................................................................................TA-TGGGACTGGACCAGCCCCAT....................................................................................................................22200.0510100000000
droWil2
ACGTCAAGAAAATGTATCGTCAAGTAATGGTACATGAAGCTGATCGA-------GATTTCCAGCTCATATTGTGGAGAAAAAACCCAGATGATTCTTTAAAAGTGATCAGGTTAAACACTGTTACGTA-TGGTACGGCGCCAGCTCCGTTTCTGGCAATACGG-TGTTTGACAAAGCTGGGTGAGATGA-TTGAATTGTCACATCCAAAAGCTGCTGAAGTTATCAGGCACGATTTTTAAGTTGATGACAT--GTT---------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................................................................GAAGTTATCAGGCACGATTT.............................20120.08101000
droVir3
ACATCAGAAAGATGTAT----AGGTCATGGTGCATGAAGCAGATCGA-------GACTTCCTGCTCGTACTGTGGGGAAAGAACCCATCTGACACATTGAGGTCCTTTAGGTTAAATATCGTAACTAA-CGGCACTGCGCCTGTCTCGTTTTTGGCAATACGG-TGTTTAACAAAGCTAAGTGAGATGA-GTGTGTCATCACACCCTAAAGCTGCTGGCGTTATCAGGCACGAATTTTATGCCGATGATT-----T---------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
ATATTGTGAAGATGTTTAGACAAATTTTGGTTGCACCTAAACATCAG-------GACTTTCAACGAATATTATGGAGAGAACATCCATCAGCACCATTGAAACACTTCAAACTCTGCACAGTTACATA-CGGGACTGCGTCTGCGCCATTCCTCGCAGTCCGGGTGTTAGAACAACTTGCCAAGGACCA-C-GAGCATGAGTTTCCTAGAGCAGCTAAGATATTACTTAAGGATTTCTACGTGGACGATGT--ATT---------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................AAACACTTCAAACTCTGCACAGT...............................................................................................................................................2390.676500010
...........................................................TCAACGAATATTATGGAGAGAACATC....................................................................................................................................................................................26130.466400011
...................................................................................................AAACACTTCAAACTCTGCACAG................................................................................................................................................2290.444400000
...................................................................................................AAACACTTCAAACTCTGCACAGTTAC............................................................................................................................................2690.333300000
...................................................................................................AAACACTTCAAACTCTGCACAGTT..............................................................................................................................................2490.333300000
..................................................................................................................................................................GGTGTTAGAACAACTTGCCAAGGAC..............................................................................25130.314300010
...................................................................................................................................................................GTGTTAGAACAACTTGCCAAGG................................................................................22130.152200000
............................................................................................................................................................................CAACTTGCCAAGGACCA-C-GAGCAT...................................................................2490.111001000
...................................................................................................AAACACTTCAAACTCTGCACAGTTA.............................................................................................................................................2590.111100000
.......................................................................................................................................................................TAGAACAACTTGCCAAGGACCA-C-GAGCT....................................................................2890.111100000
....................................................................................................AACACTTCAAACTCTGCACAG................................................................................................................................................2190.111000010
...................................................................................................AAACACTTCAAACTCTGCACAGC...............................................................................................................................................2390.111000010
...................................................................................................AAACACTTCAAACTCTGCACAGTTACA...........................................................................................................................................2790.111100000
.........................TTTGGTTGCACCTAAACATCAG-------GACT...............................................................................................................................................................................................................26100.101100000
..........................................................................................................TCAAACTCTGCACAGTTACATA-CGGGA...................................................................................................................................27100.101100000
................................GCACCTAAACATCAG-------GACT...............................................................................................................................................................................................................19100.101100000
...........................................................................................................................................................................................CA-C-GAGCATGAGTTTCCTAGAGCAGCT.................................................27100.101100000
................................GCACCTAAACATCAG-------GACTTT.............................................................................................................................................................................................................21100.101100000
...........................................................................................................................................................................................CA-C-GAGCATGAGTTTCCTAGAGCAGC..................................................26100.101000001
..........................................................................................GCACCATTGAAACACTTCAAACTCTG.....................................................................................................................................................26100.101100000
.....................................................................................................................................................................................................................................AGGATTTCTACGTGGACGATGT--AT..........24110.091100000
..................................................................................................................................................................................................GCATGAGTTTCCTAGAGCAGC..................................................21110.091000001
...........................................................................................................................................................................................CA-C-GAGCATGAGTTTCCTAGAGC.....................................................23110.091000001
........................................................................................................................................................................AGAACAACTTGCCAAGGACCA-C-.........................................................................22130.081000010
....................................................................................................................................................................TGTTAGAACAACTTGCCAAGGACC.............................................................................24130.081000010
.............................................................AACGAATATTATGGAGAGAACATCC...................................................................................................................................................................................25130.081100000
.....................................................................................................................................................TCCTCGCAGTCCGGGTGTTAG...............................................................................................21130.081100000
..................................................................................................................................................................GGTGTTAGAACAACTTGCCAAGGA...............................................................................24130.081100000
..................................................................................................................................................................GGTGTTAGAACAACTTGCCAAGGAA..............................................................................25130.081100000
..............................................................................................................................................................TCCGGGTGTTAGAACAACTTGCC....................................................................................23130.081100000
...............TTAGACAAATTTTGGTTGCACCT...................................................................................................................................................................................................................................23130.081100000
....................................................................................................................................................................TGTTAGAACAACTTGCCAAGGACCA-...........................................................................25130.081000010
ATATTGTGAAGATGTTTAGACAAATT...............................................................................................................................................................................................................................................26130.081100000
......................................................................................................................................................................TTAGAACAACTTGCCAAGGA...............................................................................20130.081100000
....................................................................................................................................................TTCCTCGCAGTCCGGGTGTTAGAACAAC.........................................................................................28130.081100000
...........................................................TCAACGAATATTATGGAGAGAACATCC...................................................................................................................................................................................27130.081100000
ATATTGTGAAGATGTTTAGACAAATTTC.............................................................................................................................................................................................................................................28130.081100000
............................................................CAACGAATATTATGGAGAGAACATC....................................................................................................................................................................................25130.081100000
...................................................................................................................................................................GTGTTAGAACAACTTGCCAAGGAC..............................................................................24130.081100000
......................................................................................................................................................................TTAGAACAACTTGCCAAGGACC.............................................................................22130.081100000
..ATTGTGAAGATGTTTAGACA...................................................................................................................................................................................................................................................20140.071000001
...........................................................TCAACGAATATTATGGAGAGAACA......................................................................................................................................................................................24150.071100000
....TGTGAAGATGTTTAGACAAATTTTGGT..........................................................................................................................................................................................................................................27150.071000001
..............................................................................................................ACTCTGCACAGTTACATA-CGGGACTGC...............................................................................................................................27170.061100000
.....................................................................................................................ACAGTTACATA-CGGGACTGC...............................................................................................................................20170.061100000
...........................................................TCAACGAATATTATGGAGAGAA........................................................................................................................................................................................22170.061100000
droGri2
ATGTAACCAAGATGTACAGGCAAGTAAATGTTGATTTAAATGATCGC-------AAATACCAGTACATACTCTGGCGAGCTCTTCCAGATGAACCACTTCGCACTTATCAACTCAACACGGTTACATA-TGGAACAGCCTCAGCGCCATACTTAGCCATACGC-AGCCTGCATTTTTTG-GCAAATCTGTGTCGAACTGAGTATCCAATCGGTGCTGCAGTCATTGAATCGTCGTTCTATGTAGATGACCT--GTT---------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
............TGTACAGGCAAGTAAATGTTGATTTAAA.................................................................................................................................................................................................................................28190.05101
droAna3
ACATAAAAAAGATGTATCGTCAAGTGATGGTAAATGAAGCAGATCAA-------CGATACCAGTTGATAGTGTGGAGAAAAGACCCGTCTGAGTCCTTGAAATTGTGCAAGCTCAACACCGTTACTTA-TGGCACTGCACCAGCCCCATTCCTGGCCATAAGG-TGTTTGAAGAGGTTGAGTGAATCCG-CGAAACATACATTCCCTCGAGCTGCTAAAGTTATTGGGTCTGACTTTTACGTCGACGACAT--GTT---------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................GAAGCAGATCAA-------CGATACCAG..........................................................................................................................................................................................................2170.141100000
....................................................................................................................CACCGTTACTTA-TGGCACTGCACCAGC.........................................................................................................................27200.102200000
...................................................................................................................ACACCGTTACTTA-TGGCACTGCAC.............................................................................................................................24200.102200000
......AAAAGATGTATCGTCAAGTGATGGTA.........................................................................................................................................................................................................................................26200.102200000
..................................................................................................................AACACCGTTACTTA-TGGCACTGC...............................................................................................................................23200.102002000
.....................................................................................................................ACCGTTACTTA-TGGCACTGCACCAGC.........................................................................................................................26200.051100000
..........................................................................................................................................................................................................TCCCTCGAGCTGCTAAAGTTATTGGG.....................................26200.051100000
............................................................................................................................................CAGCCCCATTCCTGGCCATAAGG-TGTT.................................................................................................27200.051010000
.......AAAGATGTATCGTCAAGTGATGG...........................................................................................................................................................................................................................................23200.051001000
.....................................................................................................................................ACTGCACCAGCCCCATTCCTG...............................................................................................................21200.051100000
..................................................................................................GAAATTGTGCAAGCTCAACACCG................................................................................................................................................23200.051100000
.......................................................................................................................................................................TTGAAGAGGTTGAGTGAATCCG-CGAA.......................................................................26200.051010000
.........................................................................................TGAGTCCTTGAAATTGTG..............................................................................................................................................................18200.051100000
droBip1
ACATAAAAAAGATGTATCGCCAAGTAATGGTAAATGAAGCCGATAGG-------CGATACCAGTTGATAGTGTGGAGGAAAGACCCATCAGAGTCCTTGAAACTGTGCAAGCTCAACACCGTTACATA-TGGCACTGCGCCAGCCCCATTCCTGGCCATAAGG-TGTTTGAAGAGGTTGAGTGAATCTG-TGAAAAATACATTCCCCCGAGCTGCCGAAGTTATTGGGTCCGACTTTTACGTCGACGACAT--GTT---------SizeHit CountTotal NormTotal
No Reads
droKik1
ATGTGAATAAGATGTATCGCCAAGTAATGGTTCATGAAGCGGATAGG-------CAGTTTCAACTCATAGTGTGGAGAAGAGACCCCTCTGAATCCTTAAGATTATATAAGCTCAACACCGTAACATA-TGGTACTGGACAAGCCCCTTTTCTGGCTATTCGG-TGTTTAGAAAGGTTAAGTGAATCTG-CGAAACTTTCATTCCCTAGAGCTGCCGACGTAATTGGATCCGATTTTTACGTCGATGAC----------------SizeHit CountTotal NormTotal
No Reads
droFic1
ATGTTAAA-AAATGTATCGCCAAGTAATGGTAAATGAAGCGGATAGG-------CCATTTCAACTCATAGTGTGGAGAAGAGACCCCTCAGAATCCTTGAGATTGTACCAGCTCAACACCATAACATAGTGGAACTGGCCCAGCTCCATATCTAGCGATTCGG-TGTTTAAAAAGGTTGAGTGAATCTG-CTAAATTTTCATTCCCTAAAGCTGCTGAAGTTATTGGATCCGACTTTTACGTCGATGA-----------------SizeHit CountTotal NormTotal
No Reads
droEle1
ACGTCAAAAAGATGTATCGCCAAGTGATGGTGGACGAAGCTGATCGT-------AACTTCCAGCTCATAGTATGGAGACGAGATCCTTCTGAGTCCCTGAAAATCTTTAAGTTGAACACCGTTACATA-TGGAACTTCGCCAGCACCCTTTTTGGCGATTCGG-TGTTTAATGCGGCTAGGAGAGATGG-CGCAAGCAACTCATCCAAAAGCCGCAAAGGTTATTCAGAATGATTTTTATGTTGACGTGATTTGTTTTCGAGACASizeHit CountTotal NormTotal
No Reads
droRho1
ATGTAATGAAAATGTATCGCCAAGTGATGGTGAATGAAGCAGATAGC-------CAGTTTCAACTTATAGTGTGGAGAAGAGACCCATCTGAGTCCTTGAGATTATACAAGCTCAACACCGTAACATA-TGGTACTGGACCAGCCCCGTTCTTGGCTATTCGG-TGCTTAAAAAGGTTAAGTGAGTCTG-CCAAACATTCTTTTCCTAGAGCTGCTAAAGTGATTGGATCCGACTTTTATGTCGATGA-----------------SizeHit CountTotal NormTotal
No Reads
droBia1
ATGTAAAGAAAGTGTTTCGTCAAGTGATTATAATTGAAGCGGAAAGG-------CAGTTTCATCTCATAGGGT------------------------TAAGGTTATATAAGCTCAACACTGTAACATA-CGTTACTAGACCAGCCCC-TTTCTGGCTATTCGG-TGTTATAAAATGTTAAGTGAGTCTA-CCAAATTTTCTTTTCCTAGAGCTGCGGAAATTATTGGTTCCGACTTTTATGTCGATGACAT--GTT---------SizeHit CountTotal NormTotal
No Reads
droTak1
ATGTAAAGAAAATGTATCGCCAAGTGATGGTAAATGAAGCGGATAGG-------CAGTTTCAACTTATAGTGTGGAGAAGAGACCCCTCTGAGTCCTTGAGATTATATAAGCTCAACACCGTAACATA-TGGGACTGGACCAGCCCCATTTCTGGCAATTCGG-TGTTTAAAAAGGTTAAGCGAGTCTG-CCAAACTTTCTTTTCCTAGAGCTGCTGAAGTTATTGGATCCGACTTTTATGTCGATGACAT--GTT---------SizeHit CountTotal NormTotal
No Reads
droEug1
ACATTAAAAAGATGTACCGCCAAGTGATGGTCGTCGAAGCTGACCGA-------AACTTCCAGCTCATAGTGTGGAGGCGAGATCCCTCTGAGTCTCTGGAGATCTTCAAGTTGAATACCGTAACATA-TGGAACTTCGCCAGCTCCGTTTATGGCGATCCGG-TGTTTAATGCAGCTTGGAGAAATGG-CGCAAGCTAAGTATCCAAATGCTGCGAAGGTCATTCAGAAAGATTTTTATGTTGACGATCT--GTT---------SizeHit CountTotal NormTotal
No Reads
dm3
ATGTAAA-AAAATGTATCGTCAAGTGATGGTTAATAAAGCGGATAGGTTTGGATAAGTTTTAACTTA----GTAGAGTAGAGACCCCTCTGAATCCTTAAAAGTATAGAAGCCTAACA------CATT-CGGTACTGGACCAGCCCCATTTCTGGATATTCGG-TGTTTAAAAAGGTTGAGTA----TG-C-AACTTTTCATTCCCTAGAGCTGCCGTCGTATTTGGATCCGATTTT----------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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.......................................................................GTAGAGTAGAGACCCCTCTGA.............................................................................................................................................................................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
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...........................................................................................................................................................................................TG-C-AACTTTTCATTCCCTAGAGCTG...................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
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.........................GATGGTTAATAAAGCGGATAGGTTTG......................................................................................................................................................................................................................2630.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
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.........................................................................................................TAGAAGCCTAACA------CATT-CGGT....................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
............................................................TAACTTA----GTAGAGTAGAGACCCC..................................................................................................................................................................................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................ATATTCGG-TGTTTAAAAAGGTTGT.....................................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................ACTTA----GTAGAGTAGAGACCCCTCTGA.............................................................................................................................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................................................................................CTTAAAAGTATAGAAGCCTAA.....................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................TCGG-TGTTTAAAAAGGTTGAGTA----TG-C-.........................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..............................................GTTTGGATAAGTTTTAACTTA----GTAGAG............................................................................................................................................................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................TTAAAAAGGTTGAGTA----TG-C-AA.......................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
...........................................................................................................................................................ATATTCGG-TGTTTAAAAAGGTTGAG....................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............................................................CTTA----GTAGAGTAGAGACCCCT.................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
......................................................................................................................................................TCTGGATATTCGG-TGTTTAAAAAGGTT.......................................................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................TTGAGTA----TG-C-AACTTTTCAT...............................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................TTTCTGGATATTCGG-TGTTTA...............................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................TTGGATAAGTTTTAACTTA----GT................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.................................................................................................................TAACA------CATT-CGGTACTGGACC............................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................CATT-CGGTACTGGACCAGCCCC......................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................ACA------CATT-CGGTACTGGACCAGA.........................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................GAAGCCTAACA------CATT-CGGTACTGGA..............................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....AA-AAAATGTATCGTCAAGTGATGGTT.........................................................................................................................................................................................................................................2630.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TGATGGTTAATAAAGCGGATAGG..........................................................................................................................................................................................................................2330.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................AAGCGGATAGGTTTGGATA..................................................................................................................................................................................................................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
......A-AAAATGTATCGTCAAGTGATT............................................................................................................................................................................................................................................2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
......A-AAAATGTATCGTCAAGTGATGGTT.........................................................................................................................................................................................................................................2530.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..........................ATGGTTAATAAAGCGGATAGG..........................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.....................AAGTGATGGTTAATAAAGCGGATAGGT.........................................................................................................................................................................................................................2730.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........AATGTATCGTCAAGTGATGG...........................................................................................................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........................................................................TAGAGTAGAGACCCCTCTGAATC..........................................................................................................................................................................2330.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................GATAGGTTTGGATAAGTTTTA...........................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.........................................GATAGGTTTGGATAAGTT..............................................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TAGAGACCCCTCTGAATCCTTAAA....................................................................................................................................................................2430.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........AAATGTATCGTCAAGTGATGGTTAA.......................................................................................................................................................................................................................................2530.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................GAGTAGAGACCCCTCTGAATC..........................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................CGGATAGGTTTGGATAAGTTT.............................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..........AATGTATCGTCAAGTGATGGTT.........................................................................................................................................................................................................................................2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......................AGTGATGGTTAATAAAGCGGAT.............................................................................................................................................................................................................................2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............ATCGTCAAGTGATGGTTAATAAAGCGG...............................................................................................................................................................................................................................2730.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................TAGAGACCCCTCTGAATCCTTAAAAG..................................................................................................................................................................2630.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........AAAATGTATCGTCAAGTGAT.............................................................................................................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........................TGATGGTTAATAAAGCGGATA............................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..............................TTAATAAAGCGGATAGGTTTGGA....................................................................................................................................................................................................................2330.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.....................................................................................CCTCTGAATCCTTAAAAGT.................................................................................................................................................................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TATCGTCAAGTGATGGTTAATA.....................................................................................................................................................................................................................................2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
...TAAA-AAAATGTATCGTCAAGTA...............................................................................................................................................................................................................................................2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
......A-AAAATGTATCGTCAAGTGATGGT..........................................................................................................................................................................................................................................2430.3310000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TGTAAA-AAAATGTATCGTCAAGTGA..............................................................................................................................................................................................................................................2530.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.TGTAAA-AAAATGTATCGTCAAGTGATG............................................................................................................................................................................................................................................2730.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TAAA-AAAATGTATCGTCAAGTGATGG...........................................................................................................................................................................................................................................2630.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................ATAGGTTTGGATAAGTTTTAA..........................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.........AAATGTATCGTCAAGTGATGGTT.........................................................................................................................................................................................................................................2330.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
................TCGTCAAGTGATGGTTAATAAAG..................................................................................................................................................................................................................................2330.3310000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TGTAAA-AAAATGTATCGTCAAGTGAT.............................................................................................................................................................................................................................................2630.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................ATAGGTTTGGATAAGTTTTAAC.........................................................................................................................................................................................................2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TAAA-AAAATGTATCGTCAAGTG...............................................................................................................................................................................................................................................2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
............................................................................GTAGAGACCCCTCTGAATCCTTAAAA...................................................................................................................................................................2630.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TTAATAAAGCGGATAGGTTTGG.....................................................................................................................................................................................................................2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.................CGTCAAGTGATGGTTAATAAAGCGGA..............................................................................................................................................................................................................................2630.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
droSim2
ATGTAAAAAAGATGTATCGCCAAGTAATGGTTAATGAAGCGGATAGG-------AAGTTTCAACTCATAGTGTGGAGGAGAGACCCCTCTGAATCCTTGAGATTATACAAGCTCAACACCGTCACATA-TGGTACTGGACCAGCCCCATTTCTGGCTATTCGG-TGTTTAAAGAGGTTGAGTGAATCTG-CTAAATGTTCATTC-------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
A---------------------AGTGATGGTTAATATGGCGGAAAGG-------AAGTTTCAACTCATAGTGAGGA---GAGACCCCTATGAATCCTTATGATTATACAAGCCCAACACCGT-----A-TGGTACTGCACCAGCCCCATTTCTGGGTATACGG-TGTTTAAAAAGGTTGAGTGAGC-------------CATTTCCTAGAGCTGCCGACGTCATTGGATCCGACTTTTAAGTCGATGAC----------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
ATGTAAAAAAGATGTATCGCCAAGTAATGGTTAATGAAGCGGATAGG-------AAGTTTCAACTCATAGTGTGGAGGAGAGACCCCTCTGAATCCTTGAGATTATACAAGCTCAACACCGTCACATA-TGGTACTGGACCAGCCCCATTTCTGGCTATTCGG-TGTTTAAAGAGGTTGAGTGAATCTG-CTAAATGTTCATTCCCTAGAGCTGCCGACGTGATTGGATCCGATTTTTACGTCGATGACAT--GTT---------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................ATCTG-CTAAATGTTCATTCCCTAGAGC.....................................................27200.25505000000000
....................................................................................................................................................................................................................TGCCGACGTGATTGGATCCGATTTT............................25200.20404000000000
.........................................................................................................TACAAGCTCAACACCGTCACATA-TGG.....................................................................................................................................26200.15303000000000
...................................................................................................AGATTATACAAGCTCAACACCGTCAC............................................................................................................................................26200.10202000000000
.....................................................................................................................................................TTCTGGCTATTCGG-TGTTTAAAGAGGT........................................................................................27200.05100100000000
...TAAAAAAGATGTATCGCCAAGTAA..............................................................................................................................................................................................................................................24200.05100100000000
........................................................................................................................................................................................ATCTG-CTAAATGTTCATTCCCT..........................................................22200.05101000000000
...............................................................................................................................................................TCGG-TGTTTAAAGAGGTTGAGTG..................................................................................23200.05100000010000
........................................................................TGGAGGAGAGACCCCTCTGAATCCTTG......................................................................................................................................................................27200.05101000000000
........................TAATGGTTAATGAAGCGGATAGG-------AAG................................................................................................................................................................................................................26200.05101000000000
...........................................................................................................................................CCAGCCCCATTTCTGGCTATTCGG-TG...................................................................................................26200.05101000000000
...........................................................................................................................ACATA-TGGTACTGGACCAGC.........................................................................................................................20200.05101000000000
................................................................................................................................................................................................................................TGGATCCGATTTTTACGTCGATGACA...............26200.05101000000000
................TCGCCAAGTAATGGTTAATGAAGC.................................................................................................................................................................................................................................24200.05100010000000
..........................................................................................................................................................................................................TCCCTAGAGCTGCCGACGTGATTGGA.....................................26200.05101000000000
................................................................................................................TCAACACCGTCACATA-TGGTACTGGACC............................................................................................................................28200.05100100000000
..............................................................................................................................TA-TGGTACTGGACCAGCCCCAT....................................................................................................................22200.05101000000000
..............................................................................................................................................................................................................TAGAGCTGCCGACGTGATTGG......................................21200.05101000000000
....................................................................................................................................................TTTCTGGCTATTCGG-TGTTTAAAGAGG.........................................................................................27200.05101000000000
.................................................................................................................................TGGTACTGGACCAGCCCCATTTCTGG..............................................................................................................26200.05101000000000
..............................................................................................................................TA-TGGTACTGGACCAGCCCCATTTCT................................................................................................................26200.05101000000000
................................................................................................................TCAACACCGTCACATA-TGGTACTGGA..............................................................................................................................26200.05101000000000
..............................................G-------AAGTTTCAACTCATAGTGTGGAGGAG.........................................................................................................................................................................................27200.05101000000000
..............................................................................................................................................................................................................TAGAGCTGCCGACGTGATTGGATCCGA................................27200.05101000000000
...................................................................................................AGATTATACAAGCTCAACACCGTCACAT..........................................................................................................................................28200.05101000000000
......................................................................................................................CCGTCACATA-TGGTACTGGACCAGCCC.......................................................................................................................27200.05101000000000
.............................................GG-------AAGTTTCAACTCATAGTGTGGA.............................................................................................................................................................................................24200.05100100000000
......................................GCGGATAGG-------AAGTTTCAACTCATAGTG.................................................................................................................................................................................................27200.05100000010000
.......................................................................GTGGAGGAGAGACCCCTCTGAATCCT........................................................................................................................................................................26200.05100100000000
...............................................................................................................................................................................................TAAATGTTCATTCCCTAGAGCTGCC.................................................25200.05101000000000
droEre2
ATGTAAAAAAGATAAATCGTCAAGTAATGGTTCATAAAGTGGATAGG-------AAGTTTCAACTCATAGTGTGGAGCA-----------GAATCCTTGAGATTATACTACCTCATCACCGTCACAAA-TGGTAATGGACTAGCCCCATTTATGGCTATTCGG-TGTTTGAAAAGGTTGAGTGAATCTG-CAAGATTTTCATTCCATAGAGCTGGCGACGGAATTGGATCCGATTTTTACGTCGATGACAT--GTT---------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 06/08/2015 at 04:05 PM