ID:

dpe_1310

 Coordinate:

scaffold_29:8686-8836 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.9

Flybase annnotation

exon [dper_GLEANR_2585:2]; CDS [Dper\GL20769-cds]; intron [Dper\GL20769-in]

Repeatable elements

NameClassFamilyStrand
Helitron-1N1_DVirRCHelitron-
MINIME_DNUnknownUnknown-
mature
  1. scaffold_0:6251463-6251483 -
  2. scaffold_5:2334003-2334023 +
  3. scaffold_46:509335-509355 -
  4. dpe_1310  scaffold_29:8770-8790 -
  5. scaffold_917:9115-9135 -
  6. scaffold_1471:50-70 +
  7. scaffold_2131:3300-3320 +
  8. scaffold_8295:151-171 -
star
  1. scaffold_1325:1150-1170 -
  2. scaffold_176:48090-48110 -
  3. scaffold_110:80678-80698 -
  4. scaffold_78:195764-195784 -
  5. scaffold_85:2957-2977 -
  6. scaffold_75:2355-2375 -
  7. scaffold_92:30826-30846 -
  8. scaffold_26:169944-169964 -
  9. scaffold_26:627877-627897 -
  10. scaffold_53:118032-118052 -
  11. scaffold_28:659640-659660 -
  12. dpe_1310  scaffold_29:8717-8737 -
  13. scaffold_1341:1091-1111 -
  14. scaffold_10935:366-386 -
  15. scaffold_11096:207-227 -
  16. scaffold_424:17686-17706 -
  17. scaffold_4311:720-740 -
  18. scaffold_4507:1096-1116 -
  19. scaffold_6648:986-1006 -
  20. scaffold_9355:1173-1193 -
  21. scaffold_755:5896-5916 -
  22. scaffold_6:5841023-5841043 -
  23. scaffold_16:272034-272054 -
  24. scaffold_16:1981427-1981447 -
  25. scaffold_26:752234-752254 -
  26. scaffold_54:38317-38337 -
  27. scaffold_196:32426-32446 -
  28. scaffold_2956:1546-1566 -
  29. scaffold_3114:1332-1352 -
  30. scaffold_978:5194-5214 -
  31. scaffold_3703:171-191 -
  32. scaffold_1337:750-770 -
  33. scaffold_1319:4759-4779 -
  34. scaffold_1669:373-393 -
  35. scaffold_4337:2050-2070 -
  36. scaffold_1889:1316-1336 -
  37. scaffold_4781:1597-1617 -
  38. scaffold_6165:1405-1425 -
  39. scaffold_8955:911-931 -
  40. scaffold_10458:629-649 -
  41. scaffold_21:415154-415174 +
  42. scaffold_142:43403-43423 +
  43. scaffold_157:14281-14301 +
  44. scaffold_117:85989-86009 +
  45. scaffold_2:1775314-1775334 +
  46. scaffold_2:1874646-1874666 +
  47. scaffold_2:1991840-1991860 +
  48. scaffold_3:583738-583758 +
  49. scaffold_81:184743-184763 +
  50. scaffold_62:15143-15163 +
  51. scaffold_56:237752-237772 +
  52. scaffold_58:309508-309528 +
  53. scaffold_26:422791-422811 +
  54. scaffold_30:340352-340372 +
  55. scaffold_10903:501-521 +
  56. scaffold_11601:5-25 +
  57. scaffold_2777:2766-2786 +
  58. scaffold_557:2086-2106 +
  59. scaffold_5675:1590-1610 +
  60. scaffold_10393:74-94 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACATTACATTTGACGTCATTTTTGAAGGCCCATTTCGGTAGAGTTCTGCGATACGAGACTCAAAGACTTTTGTATTTCACTTTTTATACCCGATACTCAGAATGAGTATTGGGGTATATTAGATTTGAGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATATGTATTCTTGATCAGTCCAAGTACAGGTGCACACGAGGATTACTTACTTGCGGCATCTGATTGTG
************************************************************************************************..............(((........(((((..........(((((((.....)))))))....)))))...)))********************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V111
male body		 V057
head
 M021
embryo
................................................................................................TCAGAATGAGTATTGGGGTAT...................................................................................................................................... 21 0 8 0.13 1 0 1 0 0
................................................................................................TCAGAATGAGTATTGGGGTA....................................................................................................................................... 20 0 8 0.13 1 0 1 0 0
...............................................................................................CTCAGAATGAGTATTGGGGTA....................................................................................................................................... 21 0 8 0.13 1 1 0 0 0
...................................................................................................GGATGAGTATTGGGGTATA..................................................................................................................................... 19 1 12 0.08 1 1 0 0 0
...............................................................................................CTCAGAATGAGTGTTGGGGT........................................................................................................................................ 20 1 15 0.07 1 0 1 0 0
.............................................................................................TACTCAGGATGAGTGTTGGGG......................................................................................................................................... 21 2 15 0.07 1 1 0 0 0
..........................................................................................................................ATTTGAGGTAAAAGCGGAT.............................................................................................................. 19 1 18 0.06 1 0 0 1 0
...................................................................................................GAATGAGTATTGGGGTGTA..................................................................................................................................... 19 1 20 0.05 1 1 0 0 0
.....................................................................................................................................................CGTCCAGAAGGAATCGTTTCC................................................................................. 21 0 20 0.05 1 0 0 0 1

Anti-sense strand reads

TGTAATGTAAACTGCAGTAAAAACTTCCGGGTAAAGCCATCTCAAGACGCTATGCTCTGAGTTTCTGAAAACATAAAGTGAAAAATATGGGCTATGAGTCTTACTCATAACCCCATATAATCTAAACTCCATTTTCACCTACACACATTGCAGGTCTTCCTTAGCAAAGGCTGGGGTATTTCATATACATAAGAACTAGTCAGGTTCATGTCCACGTGTGCTCCTAATGAATGAACGCCGTAGACTAACAC
*********************************************************************************..............(((........(((((..........(((((((.....)))))))....)))))...)))************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M021
embryo
 V042
embryo
 M042
female body
.............................................................................................................................................................................................CCAGAACTAGTCAGGTTCATC......................................... 21 3 2 1.00 2 2 0 0
...............................................CGCTATGCTCGGAGTTACTA........................................................................................................................................................................................ 20 3 4 0.25 1 0 1 0
..................................................................................................................................ATTTTCACCTACACACATTGC.................................................................................................... 21 0 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_29:8636-8886 - dpe_1310 ACATT----ACA--TTTGACGTCATTTTTGAAGGCCCATTTCGGTAGA-------------------------------GTTCTGCGATACGAGACTCAAA--------------------------------------------------------------------------------------------------GA--CTTTTGTATTTCACTTTTT-------ATACCCGATACTCAG----AA-TGAGTATTGGGGTATATTAGATTTGAGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATAT--GTATTCTTGATCAGTCCAAGTACAGGTGCACACGAGGATTACTTACTTGCGGCATCTGATTGTG
dp5 Unknown_singleton_3615:392-582 - C----------------------ATTTTTGAAGGCCCATTTCGGTAGA-------------------------------GTTCTGCGATACGAGACTCAAA--------------------------------------------------------------------------------------------------GA--CTTTTGTATTTCACTTTTT-------ATACCCGATACTCAA----AA-TGAGTATTGGGGTATATTAGATTTGAGGTGAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTACTT--ACTTGCGGCATCTGATT--------------------------------------------GTG
droWil2 scf2_1100000004943:9875270-9875452 + ACATT----AGA--CATGTCAACATTTTTCAAGAATCGAATTGGTGAA-------------------------------AATCTA---T---------------------------------------------------A------------------------------------------TAAATATAT-AA---G--AA-------AATCTGCTTTTT-------ATACCATACACCCAT-------AGGGTGAAATGGTATATTAAAGTCGCCAAA-------ATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCACAAAGTATAT--ATATTCTTGATCAG--------------------------------------------------
droVir3 scaffold_12958:591113-591327 - AATTT----ATA--TATAATAGTATTAATGAATGTGTATATATTTAAAATTTTGCATGTG-----------------------------ATAATAATTAAA--------------------------------------------------------------------------------------------------GG--GGTTTTCCCTTTTCTTTTT-------ATACCCTGAACCCATTAAAAA-TGGGTATAAGGGTATATTGTATTTGTGCAAAATCCAAATGTATGTAACAAGCAGAAGAAAGCATCTCCGACCCCATAAAGTATAT--ATATTCTTGATCAGCACCAATA------------------------------------------
droMoj3 scaffold_6500:17362454-17362658 - ATATATA-TATA--TATAAATTCATCTTTTTTTACGTATTTTGTTATATTTTTTCATGCCA-----------------------------CGAA--TCTGA--------------------------------------------------------------------------------------------------TG--C--TTTGTTGCGTCTTTTT-------ATACCCTGAACCCATTGAAAATGGGAAATCAGGGTATAATGGTTTTGTGAAA-------AAGTATGTAACGGGCAGAAGGAGGCGTGGCAGACCCCATAAAGTATAT--ATATTCTTGATCAGCGCGA---------------------------------------------
droGri2 scaffold_14906:4013870-4014065 - ATATG----GAT--CCCCTCGACACT-----------AATCGCATACG-------------TTGGCGCAATTTTGTGGATGAAATCGAT---------------------------------------------------A------------------------------------------CGGGTATAA-GG---C--TA-------AATTCAATTTCT-------ATACCCTGAATCCATTCAAAA-TGGGTAAAAGGGTATAATGGTTTTGTGCAA-------AAGCATGTACAAGGCAGAAGGAAGCATCTTCAACCCCATAAAGTATAT--ATATGCTTGAT-----------------------------------------------------
droAna3 scaffold_13260:1695221-1695400 + TCCA------CA--ATTTACT-CTTCTTTTAAAC--TTTTCCGAT-----------------------------------G--------------------------TAGG----------GCCTCGGATACGCC--A---ACACA-------C---------------------------------------------AA--TTTTTATATTTTAT----ATATTTTTATACCCTT-----GC-------------AGAGGGTATTATAATTTTGGTCAA-------AAGTGTGCAACGCAGTGAAGGAGACATTTCCGACCCGATAAAGTATAT--ATATTCTTGATCAG--------------------------------------------------
droBip1 scf7180000394909:11446-11630 + TAAA----------------ATCATTGATGAAGGACGACT-----------------------------------------------------------------------------------------------------ACAGTCGAATTT--------CACGACTAAATTGCGTCTTTTT----------------CT--TTTCCTCCCGCCCGTTTCT-------ATACCCGGTACTCGT-------AAAGCATAAGGGTATATTGTAGTCGTCTAA-------TTGTTTGTAGCATAGAGAAGGAATCATTTCCGACTCCATAAAGTATAT--TT-TTCTTGATCAG--------------------------------------------------
droKik1 scf7180000302817:704041-704237 + TTATATTTTATA--TT------------TTAAGTCCTGTTTAGAAACG-------------------------------GTTTCTCCATTTTAAACTTAAAATATCCTCTATTTTAATGGTTATTTAGCTTATAA--------------------------------------------------------------------------TCAGCCTGTTTTT-------ATACCCTT--------------------GCAGGGTATTATAATTTCAGTCAG-------AAGTTTGCAACGCAGTGAAGGAGACCTTTCCGACCCTATAAAGTATAT--ATATTCTTGATCAG--------------------------------------------------
droFic1 scf7180000452125:18612-18775 + TTTT-------------------------GAAGACATATTTTGG----------------------------------------------------------------------------GTAATTGGCCCAAAATAAAC-A-----------CTTTTTA--------------------------------------A--TA-------AATACAATTTTT-------ATACCCT-----TGC-------AGAGCAAAAGGGTATTCTAATTTCAGTCAG-------AAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATAT--ATATTCTTGATCAG--------------------------------------------------
droEle1 scf7180000487840:264-442 - TTGTT----GTA--TTTTATTGCCGTTGTTGTGGT-----CCT-------------------------------------------GTT------------------GTAG----------ATTGCTGCCG------ACC-A-----------CAGTTTCACA------------------------------------AA--AAATGGTATAT-CATTTTT-------ATACCCTT-----GC-------------AGAGGGTATTATAATTTCAGTCAG-------AAGTTTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATAT--ATATTCTTGATCAG--------------------------------------------------
droRho1 scf7180000777687:1013-1205 + ACTTT----ACCAAACTCAAGCCGATTTCAAAGTGGCATACCTC--------------------------------------------T------------------AAAG----------ACTTCTGATTCG---------------ATTCT--------CTAA----------------------------------AA---ATCTGCATTCAAATTTTT-------ATACCCGTTACTCGT-------AGAGTAAAAGGGTATATTGTATTCGTGCAA-------AAGTGTGTAACAGCTAGAAGGAAGCGTTTCCGACCCTATAAAGTATAT--ATATTCTTGATCAG--------------------------------------------------
droBia1 scf7180000297522:8084-8252 - AAATT----GAT--TCTGAC---------------GCATTTTTTT-------------------------------CTGTGTA---TTT------------------AT-------------------------------A------------------------------------------TAAATATAA-GAAAA-AG--CCTTTTTTTGTGCCTTTTC-------ATACCCGTTACT-------------------AGGTATACTAGATTCGTCGGA-------AAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCCCATAAAGTATATATATATTCTTGATCAG--------------------------------------------------
droTak1 scf7180000415438:69901-70096 + TCAG-------A--TTTTATTTTATTTTTTAAGCCACACTCACAAACA-------------------------------TTTTTGTTAAATATAA-------------------------------------------------------ATT--------CTGGTTTAAA----------------------------TT--CCTTTATTTTTCAGTCATT-------ATACCCGTTACTCGT-------AGAGTAAAAGGGTATATTAGATTCGTGCAA-------AAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCCATAAAGTATAT--ATATTCTTGATCAG--------------------------------------------------
droEug1 scf7180000408987:142590-142774 + GCGGT----ATA--ATCGA--TTGTTTTTGAAA---TGTTTTGGCAGGAATTTTAATAATA-----------------------------CAATAC-------------------------------------------------------------------------------A-----------------------CC--TTGATGTCAATGTGTTATT-------ATACCCGTTACTCAT-------AGAGTAAAAGGGTATACTAGATTCGTTGAA-------AAGTATGTAACATATAGAAGAAAGCGTTTCCGACCCTATAAAGTATAT--ATATTCTTGATCAG--------------------------------------------------
dm3 chr2L:21267500-21267676 + TTAA---------------------TTTTAAAGTTTCAGTTTT----------------------------------------------------------------AAAG--------GAAGTTCAAGTGCGAA------ACAGT---------------CAAA----------------------------------AA-ATTT---TAATTTGATTTTT-------ATACCCGTTACTCGT-------TCAGTAAAAGGGTATACTAGATTCGTTGAA-------AAGTATGTAACAGGCAGAAGGAAGCGTTTTCGACTATGTAAAGTATAT--ATATTCTTGATCAG--------------------------------------------------
droSim2 x:20676436-20676622 - ATTA------CA--TTTTCGGTCATCTATTAAGGCATAGGGAT-CGTGAATTTACAGCTTA-----------------------------CTAGAC-------------------------------------------------------------------------------T-----------------------GG--CTTTTGTATACAACTCTTT-------ATACCCGTTACTCGT-------AGAGTAAAAGTGCATACTAGGTTCGTTGAA-------AAGGAAGTAACAGGCTGAAGGAAGCATTTCCGACTATATAAAGTATAT--ATATTTTTGAACAG--------------------------------------------------
droSec2 scaffold_39:168822-169010 - GGATT----ACA--TTTTCGGTCATCTATTAAGGCATTGGGAT-CGTGAATTTACAGCTTA-----------------------------CTAGAC-------------------------------------------------------------------------------T-----------------------GG--CTTTTGTATACAACTCTTT-------ATACCCGTTACTCGT-------ACAGTAAAAGTGCATACTAGGTTCGTTGAA-------GAGGATGTAACAGGCTGAAGGAAGCATTTCCGACTATATAAAGTATAT--ATATTTTTGAACAG--------------------------------------------------
droYak3 v2_chr2h_random_005:258638-258823 + GCATG----AAA--AATGAAGATTTTTCTGGATGCACCTTTAGGT-------------------------------------------------------------------------------------TAT---------------ATTTC--------C---------------------TACATACATTA-----AAAACGT---CAGTTAAGTTTTT-------ATACCCGTTACTCGT-------AGAGTAAAAGGGTATACTAGATTCGTTGAA-------AAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATAT--ATATTCTTGATCAG--------------------------------------------------
droEre2 scaffold_4845:17592558-17592743 - ATTA------AA--T-TTACTTTATGTTTTGTGCATTATTGCGT--------------------------------------------T------------------AAGG----------GTATCTGAC-------------AGTCGATTCA--------GAA-----------------------------------GA--CTATTGCGTTT----CTTTAAT----TTACCCGTTACTCGT-------AGAGTAAAAGGGTATACTAGACTCGTTGAA-------GAGTATGTAA---ACTGAAGGAAACGTTTCCGACCATATAAAGTATAT--ATATCCTTGATCAG--------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
ACATT----ACA--TTTGACGTCATTTTTGAAGGCCCATTTCGGTAGA-------------------------------GTTCTGCGATACGAGACTCAAA--------------------------------------------------------------------------------------------------GA--CTTTTGTATTTCACTTTTT-------ATACCCGATACTCAG----AA-TGAGTATTGGGGTATATTAGATTTGAGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATAT--GTATTCTTGATCAGTCCAAGTACAGGTGCACACGAGGATTACTTACTTGCGGCATCTGATTGTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................................................................................................................................................................................................TCAG----AA-TGAGTATTGGGGTAT........................................................................................................................................2180.131000001
................................................................................................................................................................................................................................................TCAG----AA-TGAGTATTGGGGTA.........................................................................................................................................2080.131000001
...............................................................................................................................................................................................................................................CTCAG----AA-TGAGTATTGGGGTA.........................................................................................................................................2180.131010000
..........................................................................................................................................................................................................................................................................................................CGTCCAGAAGGAATCGTTTCC...................................................................................21200.051100000
dp5
C----------------------ATTTTTGAAGGCCCATTTCGGTAGA-------------------------------GTTCTGCGATACGAGACTCAAA--------------------------------------------------------------------------------------------------GA--CTTTTGTATTTCACTTTTT-------ATACCCGATACTCAA----AA-TGAGTATTGGGGTATATTAGATTTGAGGTGAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTACTT--ACTTGCGGCATCTGATT--------------------------------------------GTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................TTAGATTTGAGGTGAAAGTGG..................................................................................................................2160.8350000000050
...........................................................................................................................................................................................................................................................................TTAGATTTGAGGTGAAAGTG...................................................................................................................2060.3320000000020
......................................................................................................................................................................................................................................TACCCGATACTCAA----AA-TGAGTAT................................................................................................................................................23200.3060420000000
........................................................................................................................................................................................................................................................................ATATTAGATTTGAGGTGAAAG.....................................................................................................................2170.2920000000020
.....................................................................................................................................................................................................................TCACTTTTT-------ATACCCGATACTCAA----AA-.......................................................................................................................................................2640.2510000000010
.........................................................................................................................................................................................................................................................................TATTAGATTTGAGGTGAAAGTGG..................................................................................................................2360.1710000001000
...........................................................................................................................................................................................................................................................................TTAGATTTGAGGTGAAAGTGGA.................................................................................................................2260.1710000000010
....................................................................................................................................................................................................................................................................................................................GAATCGTTTCCGACCCCATAAAG.......................................................................23200.1530300000000
........................................................................................................................................................................................................................................................................................GAAAGTGGATGTGTGTAACG......................................................................................................20200.1530000000030
............................................................................................................................................................................................................................................................GAGTATTGGGGTATATTAGATT................................................................................................................................22200.1530300000000
..................................................................................................................................................................................................................................................................TGGGGTATATTAGATTTGAGG...........................................................................................................................2170.1410100000000
.......................................................................................................................................................................................................................................................................TATATTAGATTTGAGGTGAAA......................................................................................................................2170.1410000000010
....................................................................................................................................................................................................................................................................GGGTATATTAGATTTGAGG...........................................................................................................................1970.1410100000000
......................................................................................................................................................................................................................................................................................GTGAAAGTGGATGTGTGTAAC.......................................................................................................21200.0510000000010
................................................................................................................................................................................................................................................................ATTGGGGTATATTAGATTTG..............................................................................................................................20200.0510000001000
............................................................................................................................................................................................................................................................................................................TCCAGAAGGAATCGTTTCCGACCCCAT...........................................................................27200.0510100000000
..........................................................................................................................................................................................................................TTTT-------ATACCCGATACTCAA----AA-TGAGT..................................................................................................................................................26200.0510100000000
...................................................................................................................................................................................................................................................................................................TGTGTAACGTCCAGAAGGAATCGT.......................................................................................24200.0510000001000
droWil2
ACATT----AGA--CATGTCAACATTTTTCAAGAATCGAATTGGTGAA-------------------------------AATCTA---T---------------------------------------------------A------------------------------------------TAAATATAT-AA---G--AA-------AATCTGCTTTTT-------ATACCATACACCCAT-------AGGGTGAAATGGTATATTAAAGTCGCCAAA-------ATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCACAAAGTATAT--ATATTCTTGATCAG--------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................................................ATTAAAGTCGCCAAA-------ATGTATGTAACA......................................................................................................27200.5511000110
.........................................................................................................................................................................................................................................................................TATTAAAGTCGCCAAA-------ATGTATGTA.........................................................................................................25200.20400040
................................................................................................................................................................................................................................................................................................ATGTATGTAACAGGCAGAAGGAAGCAT.......................................................................................27200.15300030
................................................................................................................................................................................................................................................................................GTCGCCAAA-------ATGTATGTAACA......................................................................................................21200.10202000
.....................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAA...........................................................................................18200.05101000
......................................................................................................................................................................................................................................................................................................GTAACAGGCAGAAGGAAGCATCT.....................................................................................23200.05100010
...................................................................................................................................................................................................................................................................ATGGTATATTAAAGTCGCCAAA-------..................................................................................................................22200.05100001
...............................................................................................................................................................................................................................................................TGAAATGGTATATTAAAGTCG..............................................................................................................................21200.05100010
......................................................................................................................................................................................................................TGCTTTTT-------ATACCATACACCCAT-------AGGG...................................................................................................................................................27200.05101000
...............................................................................................................................................................................................................................................................................AGTCGCCAAA-------ATGTATGTAAC.......................................................................................................21200.05100010
droVir3
AATTT----ATA--TATAATAGTATTAATGAATGTGTATATATTTAAAATTTTGCATGTG-----------------------------ATAATAATTAAA--------------------------------------------------------------------------------------------------GG--GGTTTTCCCTTTTCTTTTT-------ATACCCTGAACCCATTAAAAA-TGGGTATAAGGGTATATTGTATTTGTGCAAAATCCAAATGTATGTAACAAGCAGAAGAAAGCATCTCCGACCCCATAAAGTATAT--ATATTCTTGATCAGCACCAATA------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAAGCAGAAGA.............................................................................................2630.672000000000000000000000000000100000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAAGCAGAAGAA............................................................................................2730.331000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAAGCAGAA...............................................................................................24200.204000000000020000000000000001010000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................TATGTAACAAGCAGAAGAAAGC.........................................................................................2250.201000000000000000000000000100000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAAGCAGAAG..............................................................................................25200.204001000000000000000000000010010000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAAGCAGA................................................................................................23200.204002000000000000000000000001000000010000000000000000000000000000
...................................................................................................................................................................................................................................................TTAAAAA-TGGGTATAAGG............................................................................................................................................18200.153000000000000000000000000000000000030000000000000000000000000000
.................................................................................................................................................................................................................................................................TAAGGGTATATTGTATTTGTG............................................................................................................................21200.153000000000000000000000000000000030000000000000000000000000000000
...................................................................................................................................................................................................................................................TTAAAAA-TGGGTATAAGGGTATATTG....................................................................................................................................26200.102000000000020000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAAGCA..................................................................................................21200.051000000000000000000000000000000001000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAAG....................................................................................................19200.051000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................CATAAAGTATAT--ATATTCTTGATCAGCA................................................28200.051000010000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAAGCAG.................................................................................................22200.051000000000000000000000000000000100000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................T--ATATTCTTGATCAGCACC..............................................19200.051000000000000000000000001000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................AGTATAT--ATATTCTTGATCAGCACCA.............................................26200.051000000000000000000000000000000000000100000000000000000000000000
droMoj3
ATATATA-TATA--TATAAATTCATCTTTTTTTACGTATTTTGTTATATTTTTTCATGCCA-----------------------------CGAA--TCTGA--------------------------------------------------------------------------------------------------TG--C--TTTGTTGCGTCTTTTT-------ATACCCTGAACCCATTGAAAATGGGAAATCAGGGTATAATGGTTTTGTGAAA-------AAGTATGTAACGGGCAGAAGGAGGCGTGGCAGACCCCATAAAGTATAT--ATATTCTTGATCAGCGCGA---------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................................................................................................................................................................TATAT--ATATTCTTGATCAGCG................................................21200.102000002
...........................................................................................................................................................................................................................................................................ATGGTTTTGTGAAA-------AAGTATG...........................................................................................................21200.051000010
...........................................................................................................................................................................................................................................................................ATGGTTTTGTGAAA-------AAGT..............................................................................................................18200.051100000
droGri2
ATATG----GAT--CCCCTCGACACT-----------AATCGCATACG-------------TTGGCGCAATTTTGTGGATGAAATCGAT---------------------------------------------------A------------------------------------------CGGGTATAA-GG---C--TA-------AATTCAATTTCT-------ATACCCTGAATCCATTCAAAA-TGGGTAAAAGGGTATAATGGTTTTGTGCAA-------AAGCATGTACAAGGCAGAAGGAAGCATCTTCAACCCCATAAAGTATAT--ATATGCTTGAT-----------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
TCCA------CA--ATTTACT-CTTCTTTTAAAC--TTTTCCGAT-----------------------------------G--------------------------TAGG----------GCCTCGGATACGCC--A---ACACA-------C---------------------------------------------AA--TTTTTATATTTTAT----ATATTTTTATACCCTT-----GC-------------AGAGGGTATTATAATTTTGGTCAA-------AAGTGTGCAACGCAGTGAAGGAGACATTTCCGACCCGATAAAGTATAT--ATATTCTTGATCAG--------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................................................................................................................................TGTGCAACGCAGTGAAGGAGACATT......................................................................................25200.306202002
...........................................................................................................................................................................................................................................TT-----GC-------------AGAGGGTATTATAATTTTGGT............................................................................................................................25200.204004000
........................................CCGAT-----------------------------------G--------------------------TAGG----------GCCTCGGATACGCC--.........................................................................................................................................................................................................................................................................24200.204400000
............................................................................................................................................................................................................................................................................................................................TCCGACCCGATAAAGTATAT--ATATT...........................................................2560.171100000
......................................................................................................................................................................................................................................................................................CAA-------AAGTGTGCAACGCAGTGAAGGA............................................................................................25200.153003000
........................................................................................................................................................................................................................................................................................................AACGCAGTGAAGGAGACATTTC....................................................................................22200.153000003
............................................................................................................................TCGGATACGCC--A---ACACA-------C---------------------------------------------AA--TTTTTATA...............................................................................................................................................................................................2870.141100000
.................TACT-CTTCTTTTAAAC--TTTTCCGAT-----------------------------------G--------------------------.......................................................................................................................................................................................................................................................................................................2670.141010000
..........................................GAT-----------------------------------G--------------------------TAGG----------GCCTCGGATACGCC--A---ACA..................................................................................................................................................................................................................................................................26200.102200000
.....................................................................................................................................................................................................................................................................................................TGCAACGCAGTGAAGGAGACATTTC....................................................................................25200.102001010
...........................................................................................................................................................................................................................................................................ATAATTTTGGTCAA-------AAGTGTGC..........................................................................................................22200.102002000
.........................................CGAT-----------------------------------G--------------------------TAGG----------GCCTCGGATACGCC--A---.....................................................................................................................................................................................................................................................................24200.102200000
.......................................TCCGAT-----------------------------------G--------------------------TAGG----------GCCTCGGATACG.............................................................................................................................................................................................................................................................................23200.102200000
...................................................................................................................................................................................................................................................................................................TGTGCAACGCAGTGAAGGAGACATTT.....................................................................................26200.102101000
........................TCTTTTAAAC--TTTTCCGAT-----------------------------------G--------------------------T......................................................................................................................................................................................................................................................................................................21180.061001000
..........................TTTTAAAC--TTTTCCGAT-----------------------------------G--------------------------TAGG----------GCCT.....................................................................................................................................................................................................................................................................................26190.051100000
...........................TTTAAAC--TTTTCCGAT-----------------------------------G--------------------------TAGG----------GCCT.....................................................................................................................................................................................................................................................................................25190.051010000
.............................TAAAC--TTTTCCGAT-----------------------------------G--------------------------TAGG----------GCCT.....................................................................................................................................................................................................................................................................................23190.051100000
........................................................................................................................................................................................................................T----ATATTTTTATACCCTT-----GC-------------AGAG.............................................................................................................................................23200.051100000
.......................................................................................................................................................................................................................................................................................AA-------AAGTGTGCAACGCAGTGAAG..............................................................................................22200.051100000
.....................................................................................................................................................................................................................................................................................TCAA-------AAGTGTGCAACGCAGTG.................................................................................................21200.051100000
.......................................TCCGAT-----------------------------------G--------------------------TAGG----------GCCTCGGATACGCC--A---.....................................................................................................................................................................................................................................................................26200.051100000
..........................................GAT-----------------------------------G--------------------------TAGG----------GCCTCGGATACGC............................................................................................................................................................................................................................................................................21200.051100000
...........................................AT-----------------------------------G--------------------------TAGG----------GCCTCGGATACGCC--T---.....................................................................................................................................................................................................................................................................22200.051000001
........................................................................................................................................................................................................................................................................................................AACGCAGTGAAGGAGACATTTCCGAC................................................................................26200.051010000
...........................................AT-----------------------------------G--------------------------TAGG----------GCCTCGGATACGCC--.........................................................................................................................................................................................................................................................................21200.051100000
.........................................CGAT-----------------------------------G--------------------------TAGG----------GCCTCGGATACGCC--.........................................................................................................................................................................................................................................................................23200.051001000
......................................................................................................................................................................................................................................................................................CAA-------AAGTGTGCAACGCAGTG.................................................................................................20200.051000001
..........................................GAT-----------------------------------G--------------------------TAGG----------GCCTCGGATACGCC--A---A....................................................................................................................................................................................................................................................................24200.051100000
.......................................................................................................................................................................................................................................................................................................CAACGCAGTGAAGGAGACATTTCCGA.................................................................................26200.051010000
............................................T-----------------------------------G--------------------------TAGG----------GCCTCGGATACGCC--.........................................................................................................................................................................................................................................................................20200.051000001
...........................................................................................................TAGG----------GCCTCGGATACGCC--A---ACAC.................................................................................................................................................................................................................................................................23200.051001000
.......................................................................................................................................................................................................................................................................................................CAACGCAGTGAAGGAGACAT.......................................................................................20200.051000010
..........................................GAT-----------------------------------G--------------------------TAGG----------GCCTCGGATACGCC--.........................................................................................................................................................................................................................................................................22200.051001000
..................................................................................................................................................................................................................................................................................................GTGTGCAACGCAGTGAAGGAGACATTTC....................................................................................28200.051000010
..........................................GAT-----------------------------------G--------------------------TAGG----------GCCTCGGATACGCC--A---AC...................................................................................................................................................................................................................................................................25200.051010000
.......................................TCCGAT-----------------------------------G--------------------------TAGG----------GCCTCGGATACGCC--.........................................................................................................................................................................................................................................................................25200.051100000
............................................................................................................................................................................................................................................................................................................CAGTGAAGGAGACATTTCCGAC................................................................................22200.051010000
........................................CCGAT-----------------------------------G--------------------------TAGG----------GCCTCGGATACGCC--A---A....................................................................................................................................................................................................................................................................26200.051100000
................................................................................................................................................................................................................................................................................................AAGTGTGCAACGCAGTGAAGGAGACATT......................................................................................28200.051100000
............................................T-----------------------------------G--------------------------TAGG----------GCCTCGGATACGCC--A---.....................................................................................................................................................................................................................................................................21200.051000001
........................................CCGAT-----------------------------------G--------------------------TAGG----------GCCTCGGATACGCC--A---AA...................................................................................................................................................................................................................................................................27200.051000001
.....................................TTTCCGAT-----------------------------------G--------------------------TAGG----------GCCTCGGATACGCC--.........................................................................................................................................................................................................................................................................27200.051010000
.........................................CGAT-----------------------------------G--------------------------TAGG----------GCCTCGGATACGCC--A---ACAC.................................................................................................................................................................................................................................................................28200.051100000
.........................................CGAT-----------------------------------G--------------------------TAGG----------GCCTCGGATACGCC--A---A....................................................................................................................................................................................................................................................................25200.051010000
.......................................................................................................................................................................................................................................................................................AA-------AAGTGTGCAACGCAGTGAAGGAG...........................................................................................25200.051001000
...........................................AT-----------------------------------G--------------------------TAGG----------GCCTCGGATACGCC--A---AC...................................................................................................................................................................................................................................................................24200.051100000
........................................CCGAT-----------------------------------G--------------------------TAGG----------GCCTCGGATACGCC--A---AC...................................................................................................................................................................................................................................................................27200.051100000
..........................................GAT-----------------------------------G--------------------------TAGG----------GCCTCGGATACGCC--A---C....................................................................................................................................................................................................................................................................24200.051001000
.........................................CGAT-----------------------------------G--------------------------TAGG----------GCCTCGGATACGCC--A---ACA..................................................................................................................................................................................................................................................................27200.051100000
droBip1
TAAA----------------ATCATTGATGAAGGACGACT-----------------------------------------------------------------------------------------------------ACAGTCGAATTT--------CACGACTAAATTGCGTCTTTTT----------------CT--TTTCCTCCCGCCCGTTTCT-------ATACCCGGTACTCGT-------AAAGCATAAGGGTATATTGTAGTCGTCTAA-------TTGTTTGTAGCATAGAGAAGGAATCATTTCCGACTCCATAAAGTATAT--TT-TTCTTGATCAG--------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TTATATTTTATA--TT------------TTAAGTCCTGTTTAGAAACG-------------------------------GTTTCTCCATTTTAAACTTAAAATATCCTCTATTTTAATGGTTATTTAGCTTATAA--------------------------------------------------------------------------TCAGCCTGTTTTT-------ATACCCTT--------------------GCAGGGTATTATAATTTCAGTCAG-------AAGTTTGCAACGCAGTGAAGGAGACCTTTCCGACCCTATAAAGTATAT--ATATTCTTGATCAG--------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TTTT-------------------------GAAGACATATTTTGG----------------------------------------------------------------------------GTAATTGGCCCAAAATAAAC-A-----------CTTTTTA--------------------------------------A--TA-------AATACAATTTTT-------ATACCCT-----TGC-------AGAGCAAAAGGGTATTCTAATTTCAGTCAG-------AAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATAT--ATATTCTTGATCAG--------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TTGTT----GTA--TTTTATTGCCGTTGTTGTGGT-----CCT-------------------------------------------GTT------------------GTAG----------ATTGCTGCCG------ACC-A-----------CAGTTTCACA------------------------------------AA--AAATGGTATAT-CATTTTT-------ATACCCTT-----GC-------------AGAGGGTATTATAATTTCAGTCAG-------AAGTTTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATAT--ATATTCTTGATCAG--------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
ACTTT----ACCAAACTCAAGCCGATTTCAAAGTGGCATACCTC--------------------------------------------T------------------AAAG----------ACTTCTGATTCG---------------ATTCT--------CTAA----------------------------------AA---ATCTGCATTCAAATTTTT-------ATACCCGTTACTCGT-------AGAGTAAAAGGGTATATTGTATTCGTGCAA-------AAGTGTGTAACAGCTAGAAGGAAGCGTTTCCGACCCTATAAAGTATAT--ATATTCTTGATCAG--------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
AAATT----GAT--TCTGAC---------------GCATTTTTTT-------------------------------CTGTGTA---TTT------------------AT-------------------------------A------------------------------------------TAAATATAA-GAAAA-AG--CCTTTTTTTGTGCCTTTTC-------ATACCCGTTACT-------------------AGGTATACTAGATTCGTCGGA-------AAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCCCATAAAGTATATATATATTCTTGATCAG--------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TCAG-------A--TTTTATTTTATTTTTTAAGCCACACTCACAAACA-------------------------------TTTTTGTTAAATATAA-------------------------------------------------------ATT--------CTGGTTTAAA----------------------------TT--CCTTTATTTTTCAGTCATT-------ATACCCGTTACTCGT-------AGAGTAAAAGGGTATATTAGATTCGTGCAA-------AAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCCATAAAGTATAT--ATATTCTTGATCAG--------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
GCGGT----ATA--ATCGA--TTGTTTTTGAAA---TGTTTTGGCAGGAATTTTAATAATA-----------------------------CAATAC-------------------------------------------------------------------------------A-----------------------CC--TTGATGTCAATGTGTTATT-------ATACCCGTTACTCAT-------AGAGTAAAAGGGTATACTAGATTCGTTGAA-------AAGTATGTAACATATAGAAGAAAGCGTTTCCGACCCTATAAAGTATAT--ATATTCTTGATCAG--------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
TTAA---------------------TTTTAAAGTTTCAGTTTT----------------------------------------------------------------AAAG--------GAAGTTCAAGTGCGAA------ACAGT---------------CAAA----------------------------------AA-ATTT---TAATTTGATTTTT-------ATACCCGTTACTCGT-------TCAGTAAAAGGGTATACTAGATTCGTTGAA-------AAGTATGTAACAGGCAGAAGGAAGCGTTTTCGACTATGTAAAGTATAT--ATATTCTTGATCAG--------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................................................................TCGTTGAA-------AAGTATGTAACAGGCAGA................................................................................................262013.0526100000000000000000000010000000000000000400000000020300200001000000000000000000000007000000000000000000000000000003000000000000000000000000002000000108720668240000000000000000000000000000000010200300015000000000010000000020028108000000000000010000000000000000000000000000000000000000000000011000000460500000000290000000000000041340000000
................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAGTATGTAACAGGC...................................................................................................24204.75950000000000000000000000000000000000000020003000000020000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000116030001000000000000000000000000000000000000000000000000000000000000000050000000100000000000000000000000000000000000000000000000000000000000000010000415000000004000000000000000000000000000
.................................................................................................................................................................................................................................................................................TCGTTGAA-------AAGTATGTAACAGGCAGAA...............................................................................................27203.75750000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000002000000000200000000000000000000000000000000001000000000000010000000000000000930017000000000000000000000000000000000000000000000000000000000000100000010000000002006000000000000001000000000
....................................................................................................................................................................................................................................................................................TTGAA-------AAGTATGTAACAGGCAGAAGGA............................................................................................27203.65730000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000112000000000000000000000000000000000000000120100000000000000000000000003801410000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAGTATGTAACAGGCAGA................................................................................................27203.40680000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000300800000000000000000000000000000000000000001000000000000000000200010002100000000000202000000000000000000000000000000000000000000000001100000013000000001900000000000000000000000000
.................................................................................................................................................................................................................................................................................TCGTTGAA-------AAGTATGTAACAGGC...................................................................................................23203.0060000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000130020002007000000000000000000000000000000000010000000000000000000000000006001000000000000000000000000000000000000000000000000000000000000000000000002500000000000000000000000000000000000
...........................................................................................................AAAG--------GAAGTTCAAGTGCGAA------ACAGT---------------C................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................................................................................................................................................................TCGTTGAA-------AAGTATGTAACAGGCAG.................................................................................................25201.953900000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000001100000000000000000000000000000000000001000020000000000000000000002004000001000000000000000000000000000000000000000000000000000000000000000000010000000002000000000000000000200000000
................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAGTATGTAACAGG....................................................................................................23201.903800000000000000000000000000000000000000000040001020100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000100000000000000000100000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001304000000000000000000000000
....................................................................................................................................................................................................................................................................................TTGAA-------AAGTATGTAACAGGCAGAA...............................................................................................24201.6533000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000001401500000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................................................................................ATACTAGATTCGTTGAA-------AAGT..............................................................................................................21201.50300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000800000000000006000000020000000070000000010000000000000040
...........................................................................................................................................................................................................................................GTTACTCGT-------TCAGTAAAAGGGTAT........................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
........................................................................................................................................................................................................................................................................................................AACAGGCAGAAGGAAGCGTTT.....................................................................................21201.00200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000020000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000002000000000000022000000000010000000100404000
....................................................................................................................................................................................................................................................................................TTGAA-------AAGTATGTAACAGGCAGAAGG.............................................................................................26201.00200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000001700001000000000000000000000000510000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000
........................................................................................................................................................................................................A-ATTT---TAATTTGATTTTT-------ATA..........................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................AAGTATGTAACAGGCAGAAGGAAGC.........................................................................................25201.00200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050400700000000000000000000001000000000000000000000000000000000000000000000000000000300000000000000000000000000
...................................................................................................................................................................................................................................................T-------TCAGTAAAAGGGTATACTAGATTCGTT............................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................ACTAGATTCGTTGAA-------AAGTAT............................................................................................................21201.00200000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000300300000000000000000000000000000000000000000000000000000000000100000000000000000102000050000000000000000000000000000
................................................................................................................................................................................................................................................................................................AAGTATGTAACAGGCAGAAGGAAG..........................................................................................24200.95190000000000000000000000000000000001000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000200000000000000000000000000000000000000000000002000000000000000000000000300120000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000012000000
.................................................................................................................................................................................................................................................................................TCGTTGAA-------AAGTATGTAACAGG....................................................................................................22200.95190000000000000000000000000000000000000000101000000000100000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000100000000000000000000800000000010000000000000000001000000
................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAGTATGTAACAGGCA..................................................................................................25200.90180000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000900000000000000000000000000
.....................................................................................................................................................................................................................................................................................TGAA-------AAGTATGTAACAGGCAGAAGGA............................................................................................26200.85170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000100000000000608000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................AAAAGGGTATACTAGATTCGT.............................................................................................................................21200.85170000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000001000000000000000000000000000000000000010000000000000010000000000000000000000000000000000000000000000000000000000000000000000200000000003000000004000000010000000000000000010000000
.................................................................................................................................................................................................................................................................................TCGTTGAA-------AAGTATGTAACAGGCA..................................................................................................24200.80160000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000002000000008000000000000000200000000
................................................................................................................................................................................................................................................................................................AAGTATGTAACAGGCAGAAGGAAGCG........................................................................................26200.75150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000001000000000000000000000020013000000000000000000000000000000000000000000000000000000000000000000000100000000500000000000000000000000000
....................................................................................................................................................................................................................................................................................TTGAA-------AAGTATGTAACAGGCAGAAG..............................................................................................25200.75150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000020000000000000030000000000000000000000000000000000000000500000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................TTGAA-------AAGTATGTAACAGGCAGA................................................................................................23200.70140000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000100000002000000000000000000400000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCGTT......................................................................................23200.70140000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000070000000300000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................TAAAAGGGTATACTAGATTCGTTGAA-------..................................................................................................................26200.70140000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000100000011000000000000000000000000000000000000000000000000000000000000001000000001000000000000000000000002001400000
........................................................................................................................................................................................................................................................................................A-------AAGTATGTAACAGGCAGAAGGAAGC.........................................................................................26200.65130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060200230000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAGTATGTAACAGGCAG.................................................................................................26200.65130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000001000000000000000000000000000000000000000000000000000000005000000000000010000000000000000000000000000000000000000000000000000000000000000002000000000000000011000000000000000000000000
......................................................................................................................................................................................................................................................................................................GTAACAGGCAGAAGGAAGCGT.......................................................................................21200.65130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000206000
................................................................................................................................................................................................................................................................................................AAGTATGTAACAGGCAGAAGGAAGCGT.......................................................................................27200.60120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000020000500000000000100000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000
.........................................................................................................................................................................................................................................................................TACTAGATTCGTTGAA-------AAGTA.............................................................................................................21200.601200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................GTAACAGGCAGAAGGAAGCGTTTTC...................................................................................2550.6030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000001000000
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droSim2
ATTA------CA--TTTTCGGTCATCTATTAAGGCATAGGGAT-CGTGAATTTACAGCTTA-----------------------------CTAGAC-------------------------------------------------------------------------------T-----------------------GG--CTTTTGTATACAACTCTTT-------ATACCCGTTACTCGT-------AGAGTAAAAGTGCATACTAGGTTCGTTGAA-------AAGGAAGTAACAGGCTGAAGGAAGCATTTCCGACTATATAAAGTATAT--ATATTTTTGAACAG--------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
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...........................................................................................TAGAC-------------------------------------------------------------------------------T-----------------------GG--CTTTTGTATACAACTCTT.....................................................................................................................................................................................2612.00200000020000000000
..........................................T-CGTGAATTTACAGCTTA-----------------------------CTAGAC-------------------------------------------------------------------------------T-----------------------GG--C......................................................................................................................................................................................................2812.00200000020000000000
.............................TAAGGCATAGGGAT-CGTGAATTTAC...........................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
..............TTTTCGGTCATCTATTAAGGCATAGGGA........................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
...............................................................................................................................................................................T-----------------------GG--CTTTTGTATACAACTCTTT-------ATA..........................................................................................................................................................................2511.00100000001000000000
................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAGGAA............................................................................................................1530.33100000001000000000
...........................................................................................................................................................................................................................TTT-------ATACCCGTTACTCGT-------AGAGTAAA...............................................................................................................................................26200.05100000010000000000
............................................................................................................................................................................................................................TT-------ATACCCGTTACTCGT-------AGAGTAAA...............................................................................................................................................25200.05100000001000000000
...........................................................................................................................................................................................................................TTT-------ATACCCGTTACTCGT-------.......................................................................................................................................................18200.05100000000001000000
droSec2
GGATT----ACA--TTTTCGGTCATCTATTAAGGCATTGGGAT-CGTGAATTTACAGCTTA-----------------------------CTAGAC-------------------------------------------------------------------------------T-----------------------GG--CTTTTGTATACAACTCTTT-------ATACCCGTTACTCGT-------ACAGTAAAAGTGCATACTAGGTTCGTTGAA-------GAGGATGTAACAGGCTGAAGGAAGCATTTCCGACTATATAAAGTATAT--ATATTTTTGAACAG--------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................................................................................................................................................................T-------ACAGTAAAAGTGCATACTAG...................................................................................................................................2111.0011000
..ATT----ACA--TTTTCGGTCATCTA......................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
droYak3
GCATG----AAA--AATGAAGATTTTTCTGGATGCACCTTTAGGT-------------------------------------------------------------------------------------TAT---------------ATTTC--------C---------------------TACATACATTA-----AAAACGT---CAGTTAAGTTTTT-------ATACCCGTTACTCGT-------AGAGTAAAAGGGTATACTAGATTCGTTGAA-------AAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATAT--ATATTCTTGATCAG--------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................................................................................................................................................................................GCAGAAGGAAGCGTTTCCGACCATA............................................................................25204.2084084000000000
.................................................................................................................................................................................................................................................................................TCGTTGAA-------AAGTATGTAACAGGCAGA................................................................................................26200.5010001000000000
................................................................................................................................................................................................................................................TCGT-------AGAGTAAAAGGGTATA.......................................................................................................................................20200.35700000070000
....................................................................................................................................................................................................................................................................................TTGAA-------AAGTATGTAACAGGCAGAAGGA............................................................................................27200.25500000000005
.................................................................................................................................................................................................................................................................................................AGTATGTAACAGGCAGAAGGAAGCG........................................................................................25200.20400000000004
.......................................................................................................................................................................................TACATACATTA-----AAAACGT---CAGTTAAGT........................................................................................................................................................................................27200.20401000000003
.......................................................................................................................................................TC--------C---------------------TACATACATTA-----AAAACGT---CAGT.............................................................................................................................................................................................25200.05100000010000
droEre2
ATTA------AA--T-TTACTTTATGTTTTGTGCATTATTGCGT--------------------------------------------T------------------AAGG----------GTATCTGAC-------------AGTCGATTCA--------GAA-----------------------------------GA--CTATTGCGTTT----CTTTAAT----TTACCCGTTACTCGT-------AGAGTAAAAGGGTATACTAGACTCGTTGAA-------GAGTATGTAA---ACTGAAGGAAACGTTTCCGACCATATAAAGTATAT--ATATCCTTGATCAG--------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................................................................................................ATACTAGACTCGTTGAA-------GA................................................................................................................1911.0010000100

Generated: 06/08/2015 at 04:04 PM