ID:

dpe_1303

 Coordinate:

scaffold_28:739313-739463 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-23.6

Flybase annnotation

exon [dper_GLEANR_16082:1]; CDS [Dper\GL15146-cds]; intron [Dper\GL15146-in]

Repeatable elements

NameClassFamilyStrand
(CTG)nSimple_repeatSimple_repeat+

Sense Strand Reads

-----------#######################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TTCGCACTCTGATGAACAAAATCACCCTGGAAATATATGCCACCGCCAAAGTAATTGTAATGCTTTCTCTCTACGTTCGAGCTACTCCATCAGCAGCAGCAGAAGCAGCAGCTGCAGCCGCCTCCATGAGGACAGGATTGATGCCCAGCATTTAACTGACAACGATGCAACCGCCACAGCCACATCCACAGCCTCAGCCACAGCCACACTTGAATGCTGAAGCTGACTAGAATAATATCATTTCAGTTGTG
********************************************************************.....((((((.(((.........(((((.((.......)).))))))))))((((...)))).(((....(((((...)))))...)))..))))........******************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M021
embryo
 M042
female body
 V042
embryo
..............................................................................................................................................................................................................CACTTGAATGCTGAAGCT........................... 18 0 1 4.00 4 4 0 0
..CGCACTCTGATGAACAAAAT..................................................................................................................................................................................................................................... 20 0 1 3.00 3 3 0 0
..CGCACTCTGATGAACAAAATCACCCTGGA............................................................................................................................................................................................................................ 29 0 1 2.00 2 2 0 0
.......................................................................................................................................................TTAACTGACAACGATGCAACC............................................................................... 21 0 1 2.00 2 2 0 0
....................................................................CTCTACGTTCGAGCTACTCCATCAGCA............................................................................................................................................................ 27 0 1 1.00 1 0 1 0
...........ATGAACAAAATCACCCTGGA............................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 1
...................................................................................................................................ACAGGATTGATGCCCAGCATTTAACT.............................................................................................. 26 0 1 1.00 1 0 1 0
...............................................................................................................................................................................................................ACTTGAATGCTGAAGCTGACT....................... 21 0 1 1.00 1 1 0 0
...................................................TCATTGTAAAGCTTTCTGTCTA.................................................................................................................................................................................. 22 3 1 1.00 1 0 0 1
.............................................................................................................................ATGAGGACAGGATTGATGCCCAGC...................................................................................................... 24 0 1 1.00 1 0 0 1
.........................................................................................................................CTCCATGAGGACAGGATTGATGCCCAGC...................................................................................................... 28 0 1 1.00 1 0 1 0
...................................................................................................................................................................................................................GAATGCTGAAGCTGACTAGA.................... 20 0 1 1.00 1 0 0 1
.................................................................................................................................GGACAGGATTGATGCCCAG....................................................................................................... 19 0 1 1.00 1 0 1 0
...........................................................................................................................................GATGCCCAGCATTTAACTGACAAC........................................................................................ 24 0 1 1.00 1 0 1 0
.............................................................................................................................................................AGCAACGATGCAACCGCCACAGC....................................................................... 23 2 1 1.00 1 0 1 0
...............................................................................................................................................................CAACGATGCAACCGCCACAGC....................................................................... 21 0 1 1.00 1 0 1 0
...........................................................................................................................................................................................................CCACACTTGAATGCTGAAGCT........................... 21 0 1 1.00 1 1 0 0
...........................................................................................................................................................................................................CCACACTTGAATGCTGAAGCC........................... 21 1 1 1.00 1 1 0 0
.........................................................................................................................................................AACTGACAACGATGCAACC............................................................................... 19 0 1 1.00 1 1 0 0
............................................................................................................................................................................................................CACACTTGAATGCTGAAGCT........................... 20 0 1 1.00 1 1 0 0
..........................................................................GTTCGAGCTACTCCATCAGCAGCAGC....................................................................................................................................................... 26 0 1 1.00 1 0 1 0
..CGCACTCTGATGGACAAAATCACCCTGGA............................................................................................................................................................................................................................ 29 1 1 1.00 1 1 0 0
.................................................AGTAATTGTAATGCTTTCT....................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0
...........................................................................TTCGAGCTACTCCATCAGCAGCAGCAGA.................................................................................................................................................... 28 0 1 1.00 1 0 1 0
..........................................................................................................................................................................................................GCCACAAGTGAATGCTGAAGG............................ 21 3 9 0.11 1 0 0 1

Anti-sense strand reads

AAGCGTGAGACTACTTGTTTTAGTGGGACCTTTATATACGGTGGCGGTTTCATTAACATTACGAAAGAGAGATGCAAGCTCGATGAGGTAGTCGTCGTCGTCTTCGTCGTCGACGTCGGCGGAGGTACTCCTGTCCTAACTACGGGTCGTAAATTGACTGTTGCTACGTTGGCGGTGTCGGTGTAGGTGTCGGAGTCGGTGTCGGTGTGAACTTACGACTTCGACTGATCTTATTATAGTAAAGTCAACAC
*******************************************************************************.....((((((.(((.........(((((.((.......)).))))))))))((((...)))).(((....(((((...)))))...)))..))))........******************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
......................................................................................................................................................AAATTGCCGGTTGCTCCGTT................................................................................. 20 3 12 0.08 1 1 0
.......................................................................ATGGAAGCTCGAGGAGGCA................................................................................................................................................................. 19 3 15 0.07 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_28:739263-739513 - dpe_1303 TT----------------------------------------------------------------------------C----GCACTCTGATGAACAA--AA--TCACCCTGGAAATATATGCCACCGCCAAAGTAA-----TTG------TAATGCTTTCTCTCTACGTTCGAGCTAC---TCCATCAGCAGCAGCAGAAGCAGCAGCTGCAGC-----------------CGCCTCCATGAG------GAC--AGG-----------ATT-GATGCCCAGCATTTAACTGACAACGATGCAA----CCGCCACAGCCACATCCACAGCCTCAGCCA--CAGC--C------ACACTTGAAT----------GCTGAAGCTGACTAGAAT-AA--TATCATTTC----------AGTTGTG
dp5 XL_group1a:2302376-2302632 - TT----------------------------------------------------------------------------C----GCACTCTGATGAACAA--AA--TCACCCTGGAAATATATGCCACCGCCAAAGTAA-----TTG------TAATGCTTTCTCTCTACGTTCGAGCTAC---TCCATCAGCAGCAGCAGAAGCAGCAGCTGCAGC-----------------CGCCTCCATGAG------GAC--AGG-----------ATT-GATGCCCAGCATTTAACTGACAACGATGCAA----CCGCCACAGCCACATCCACAGCCTCAGCCA--CAGC--CACAGCCACACTTGAAT----------GCTGAAGCTGACTAGAAT-AA--TATCATTTC----------AGTTGTG
droWil2 scf2_1100000004909:1589903-1589973 + TAAG-----AACTAGA--------------------------------------------------------------AAAAGACGGTCGAAAAAACCCA-AA--TTTATCGCCAAA-----------------GTAA-----TA-----TATAATGTCTCTCTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT
droVir3 scaffold_12932:676313-676367 - CT----------------------------------------------------------------------------G----ATGAACTGATGAACCG--AA--TCACACACCAAT-----------------ACGA-----ATGTCATCGCCAAAGTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6540:21134987-21135112 - AC----------------------------------------------------------------------------A----CCACCAGCAGCAACAG-----------------------------------------------------------------------------------------------------GAGCAACAGCAGCAAC----------------ACGC--CAATTGGTTAGCGTAC--AAT-----------AAT-TGTGCCTACGATTTAACTAGCAACAGTGCAA----CAGCAGCAGCAGCAGCGGCGGCCGCAGCAG--CAAC------------------------------------------------------------------------------
droGri2 scaffold_15110:17446572-17446664 + A----------------------------------------------------------------------------------GGAGCAGGAGGAGCA-----------------------------------------------------------------------------------------------------------GCAGCAGCAGC-----------------AGCAGCAGCGGG------AGC--AGG-----------A----------------------------------------------------------GCAGCAGCAG--CAGA--T-----------------------------------GCTTAGCTTTGATAACAATGATG---CC-----ATATCCA
droAna3 scaffold_13417:1245946-1246160 - TC----------------------------------------------------------------------------A----ACAGTCAAAGGAACAA--TG--TCACCCGCCAAA-----------------CTAA-----CTTTAATCGTAATATCTCCTCTCTATGTTCGAGCCAC---C---------------------CCA--------CCAGCAGGAAGAGCTGCTGCCTCCATGAG------GCACTCGCATTTACCCAACAACC---GC----------------------CCGA----AAAACAAAAAAACAACAAAAAGCCAACACA--GGACACTG--------CATGGACTGTCAACATGG------CCCGCTGGATCCAA--TA-----------------TCTCGTC
droBip1 scf7180000395921:13652-13858 + TC----------------------------------------------------------------------------A----ACAGTCAAAGGAACAA--TG--TCACCCGCCAAA-----------------CTAA-----CTTTAATCGTACTATTTCCTCTCTATGTTTGAGCCAGCAAC---------------------CCA--------GCATCAGGGAGAGCTGATGCCTCCATGAG------GCACTCGCATTTACCCAACAACC---GC----------------------CC------------GAAAAACAAAAAC-CCCA-AAACG--AAACACTG--------CATG-ACAGTCCACCGTG------CTCGCAGGATTCAA--TATCCTT-----------------TT
droKik1 scf7180000302517:306755-306947 + GG----------------------------------------------------------------------------A----GCAGTCGAATGAACAA--AA--TCGCCCGCCAAA-----------------CTAAACTAATCGTAAACATAATGT-TTCTCTCCGCATTCAG-TCAA---A---------------------CCA--------GCAGCAA--------GAAGCCTCTGTGAG------GAGCCCGCATTTACACAGTATCCCACATCCGACATCGAAAAGACAACAAAG---------------------------------------------------------------------CATG---CAACTAGCGGGAATAGA--AGTCATCCA--ATT-----TGTTGTG
droFic1 scf7180000453277:80055-80249 + ------------------------------------------------------------------------------A----GCAGTCGAATGAACAAACAAACACGCCCGCCAAA-----------------CTAA-----TTGTAATCGCAATGTTTTCTCTTCAAAATATG-T------A---------------------CCA--------GC------------AGAAGCCTCTGTGAG------GAGCCCGCATTTAAACTAT---T---GT----TAT----------------C-AAGAACAACAACAACAACAAAAACACCCAAAAAGACA-----------------------------ACATG------CTAGCTGGATTCGATAAGTCATTCA---TC-----ACTTGTG
droEle1 scf7180000491023:555691-555892 - TCCGCAGG--ATCAGCAGGGATCAGCAGGGATCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGCAGTA----GCAGTCGAATGAACAAACAAA-TCGCCCGCCAAA-----------------CTAA-----TCGTAATAGTAATGTTTTCACTCCGAAAC-----------A---------------------CCA--------GCAGC---------AGAAGCCTCTGTGAG------AAGCCCGCATTTAA-----------------------------------------------------------------------------------------------------------------------------ATCGA--AGTCATTCA----------TATTGTG
droRho1 scf7180000777256:46386-46559 - ------------------------------------------------------------------------------A----GCAGTCAAATGAACAAAAAA--TCGCCCGCCAAA-----------------CTAA-TTA-ATGTAATCGTAATATTTTCTCTCCGAAAC-----------A---------------------CCA--------GCAAC---------AGAAGCCTCTGTGAG------GAGCCCGCATTTAAACAACATAT---GT-----AT----------------C----------------A---ATAATACCCA-AAACATA-----------------------------ACGTG------CTAGCTGGAATCGA--AGTCATTCA----------TCTTGTG
droBia1 scf7180000298389:1414516-1414560 + GC----------------------------------------------------------------------------A----GCATTCAAATGAACAAA-AA--TCGCCCGCCAAA-----------------CTAA-----TTGTAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000414375:262441-262501 - ------------------------------------------------------------------------------A----GCAGTCGAATGAACAAA-AA--TCGCCCGCCAAA-----------------CTAA-----TCGTAATCGTAATGTTTTCTCTTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409528:30160-30334 - ------------------------------------------------------------------------------A----GCAGTCGGATGAACAAATAA--ACGCCCGCCAAA-----------------TTAA-----TTGTAATCGTAATGTTTTCTCTTCAAAAT-----------A---------------------CCA--------GCA---T--------AAAACCTCTGTGAG------GAGTCCGCATTTAAACAAT---C---TA----------------------CC----------------AACAA---AACCTA-AAAGACA-----------------------------ACGTG------CTTGCTGGAATCGA--TGTCGTTCTTACTTTCCTACGCTGTG
dm3 chrX:11613548-11613609 + GC----------------------------------------------------------------------------A----GTAGTCGAATGATCAAATAA--TCGCCCGCCAAA-----------------TTAA-----TTGTAATCGTAATTT-TTCTTTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 x:11008344-11008421 + TTCGCAGGGAATCAGC--------------------------------------------------------------A----GTAGTCGAATGATCAAATAA--TCGCCCGCCAAA-----------------TTAA-----TTGTAATCGTAATGATTTTTCTCCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_36:302546-302609 + GC----------------------------------------------------------------------------A----GTAGTCGAATGATCAAATAA--TCGCCCGCCAAA-----------------TTAA-----TTGTAATCGTAATGATTTTTCTCCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 2R:18208417-18208530 - AG----------------------------------------------------------------------------------C--------------------------------------------------------------------------------------------CAA---TCCGGCGGCAGCAGCAGCAGCAACAGCAGCAGC-----------------CGCCTTCAACGG------CA-C-------------------------CAGCA---ACTTGATAATCATCGAG----CCGCAGCAGCAACAGCAACAGCAGCAGCAG--CCGC--C------------------------------------------------------------------------GCA
droEre2 scaffold_4690:3573046-3573119 - TTCACAGGGGATAAGC--------------------------------------------------------------A----GTAGTCGAATGATCAAATAA--TCGCCCGCCAAA-----------------TTAA-----TTGTAATCATAATGTTTTCTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
TT----------------------------------------------------------------------------C----GCACTCTGATGAACAA--AA--TCACCCTGGAAATATATGCCACCGCCAAAGTAA-----TTG------TAATGCTTTCTCTCTACGTTCGAGCTAC---TCCATCAGCAGCAGCAGAAGCAGCAGCTGCAGC-----------------CGCCTCCATGAG------GAC--AGG-----------ATT-GATGCCCAGCATTTAACTGACAACGATGCAA----CCGCCACAGCCACATCCACAGCCTCAGCCA--CAGC--C------ACACTTGAAT----------GCTGAAGCTGACTAGAAT-AA--TATCATTTC----------AGTTGTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................................................................................................................................................................................................................................................CACTTGAAT----------GCTGAAGCT........................................1814.004400000
..............................................................................C----GCACTCTGATGAACAA--AA--T.............................................................................................................................................................................................................................................................................................................................2013.003300000
..............................................................................C----GCACTCTGATGAACAA--AA--TCACCCTGGA....................................................................................................................................................................................................................................................................................................................2912.002200000
..............................................................................................................................................................................................................................................................................................TTAACTGACAACGATGCAA----CC................................................................................................................2112.002200000
...................................................................................................................................................................CTCTACGTTCGAGCTAC---TCCATCAGCA......................................................................................................................................................................................................................................2711.001010000
...........................................................................................ATGAACAA--AA--TCACCCTGGA....................................................................................................................................................................................................................................................................................................................2011.001001000
............................................................................................................................................................................................................................................................AC--AGG-----------ATT-GATGCCCAGCATTTAACT...................................................................................................................................2611.001010000
....................................................................................................................................................................................................................................................................................................................................................................ACTTGAAT----------GCTGAAGCTGACT....................................2111.001100000
................................................................................................................................................................................................................................................ATGAG------GAC--AGG-----------ATT-GATGCCCAGC...........................................................................................................................................2411.001001000
............................................................................................................................................................................................................................................CTCCATGAG------GAC--AGG-----------ATT-GATGCCCAGC...........................................................................................................................................2811.001010000
........................................................................................................................................................................................................................................................................................................................................................................GAAT----------GCTGAAGCTGACTAGA.................................2011.001001000
....................................................................................................................................................................................................................................................G------GAC--AGG-----------ATT-GATGCCCAG............................................................................................................................................1911.001010000
..................................................................................................................................................................................................................................................................................GATGCCCAGCATTTAACTGACAAC.............................................................................................................................2411.001010000
......................................................................................................................................................................................................................................................................................................CAACGATGCAA----CCGCCACAGC........................................................................................................2111.001010000
........................................................................................................................................................................................................................................................................................................................................................C--C------ACACTTGAAT----------GCTGAAGCT........................................2111.001100000
........................................................................................................................................................................................................................................................................................................................................................C--C------ACACTTGAAT----------GCTGAAGCC........................................2111.001100000
................................................................................................................................................................................................................................................................................................AACTGACAACGATGCAA----CC................................................................................................................1911.001100000
...........................................................................................................................................................................................................................................................................................................................................................C------ACACTTGAAT----------GCTGAAGCT........................................2011.001100000
.........................................................................................................................................................................GTTCGAGCTAC---TCCATCAGCAGCAGC.................................................................................................................................................................................................................................2611.001010000
.....................................................................................................................................AGTAA-----TTG------TAATGCTTTCT....................................................................................................................................................................................................................................................................1911.001010000
..........................................................................................................................................................................TTCGAGCTAC---TCCATCAGCAGCAGCAGA..............................................................................................................................................................................................................................2811.001010000
dp5
TT----------------------------------------------------------------------------C----GCACTCTGATGAACAA--AA--TCACCCTGGAAATATATGCCACCGCCAAAGTAA-----TTG------TAATGCTTTCTCTCTACGTTCGAGCTAC---TCCATCAGCAGCAGCAGAAGCAGCAGCTGCAGC-----------------CGCCTCCATGAG------GAC--AGG-----------ATT-GATGCCCAGCATTTAACTGACAACGATGCAA----CCGCCACAGCCACATCCACAGCCTCAGCCA--CAGC--CACAGCCACACTTGAAT----------GCTGAAGCTGACTAGAAT-AA--TATCATTTC----------AGTTGTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................................................TCCATGAG------GAC--AGG-----------ATT-GATGCC...............................................................................................................................................2313.0030300000000
................................................................................................................................................................................................................................................................................................AACTGACAACGATGCAA----CCGCC.............................................................................................................2211.0010010000000
..................................................................................................................................................................................................................................................................................................................................................................ACACTTGAAT----------GCTGAAGCT........................................1911.0010100000000
...................................................................................GCACTCTGATGAACAA--AA--TCACCCTGGA....................................................................................................................................................................................................................................................................................................................2811.0010010000000
.......................................................................................................................................TAA-----TTG------TAATGCTTTCTCTCTAC..............................................................................................................................................................................................................................................................2311.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................CACTTGAAT----------GCTGAAGCTGACTAGA.................................2511.0010100000000
..............................................................................C----GCACTCTGATGAACAA--AA--TCACCCT.......................................................................................................................................................................................................................................................................................................................2611.0010100000000
..........................................................................................................................................................................................................................................................................................................................ACAGCCACATCCACAGCCTCAGCC.....................................................................................2411.0010010000000
.....................................................................................................................................................................CTACGTTCGAGCTAC---TCCATCAGCA......................................................................................................................................................................................................................................2511.0010010000000
.........................................................................................................................................................................................................................................................................................................................................................................AAT----------GCTGAAGCTGACTAG..................................1811.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................AT----------GCTGAAGCTGACTAGA.................................1811.0010100000000
...................................................................................................................................................................................................................GCAGC-----------------CGCCTCCATGAG------GAC--AGG-----------ATT-.....................................................................................................................................................2611.0010010000000
..................................................................................................................................................................................................................................................................................GATGCCCAGCATTTAACTGACAACGATGC........................................................................................................................2911.0010100000000
..........................................................................................................................................................................TTCGAGCTAC---TCCATCAGCAGC....................................................................................................................................................................................................................................2211.0010100000000
...........................................................................................................................................................TGCTTTCTCTCTACGTTCGAGCTAC---TCC.............................................................................................................................................................................................................................................2811.0010100000000
........................................................................................CTGATGAACAA--AA--TCACCCTGGA....................................................................................................................................................................................................................................................................................................................2311.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................TGAAT----------GCTGAAGCTGACTAGAAT-AA--..........................2511.0010000000100
........................................................................................................................................................................................CCATCAGCAGCAGCAGAAGC...........................................................................................................................................................................................................................2011.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................T----------GCTGAAGCTGACTAGAAT-A.............................2011.0010100000000
.....................................................................................ACTCTGATGAACAA--AA--TCACCCTG......................................................................................................................................................................................................................................................................................................................2411.0010100000000
............................................................................................................................................................................................................................................CTCCATGAG------GAC--AGG-----------ATT-GATGCCCAGC...........................................................................................................................................2811.0010100000000
..........................................................................................................................................................................................................................................GCCTCCATGAG------GAC--AGG-----------ATT-G....................................................................................................................................................2111.0010100000000
.........................................................................................................................................A-----TTG------TAATGCTTTCTCTCTACGTT...........................................................................................................................................................................................................................................................2411.0010010000000
..............................................................................................................................................................................................................................................................................................................................................................AGCCACACTTGAAT----------GCTGAAGCT........................................2311.0010100000000
.............................................................................................................................................................................................................................................TCCATGAG------GAC--AGG-----------ATT-GATGCCCAGCA..........................................................................................................................................2811.0010100000000
...............................................................................................................................................................................................................................................................................................................................CACATCCACAGCCTCAGCCA--CAGC--CAC.........................................................................2711.0010100000000
...........................................................................................ATGAACAA--AA--TCACCCTGGA....................................................................................................................................................................................................................................................................................................................2011.0010000100000
............................................................................................................................................................................CGAGCTAC---TCCATCAGCAGC....................................................................................................................................................................................................................................2011.0010100000000
..........................................................................................................................................................................................................................................GCCTCCATGAG------GAC--AGG-----------ATT-.....................................................................................................................................................2011.0010010000000
.................................................................................................................................................................................................................................................................................................................................................................CACACTTGAAT----------GCTGAAGCT........................................2011.0010100000000
...........................................................................................................................................................................TCGAGCTAC---TCCATCAGCAGCAGC.................................................................................................................................................................................................................................2411.0010010000000
...................................................................................................................................................................CTCTACGTTCGAGCTAC---TCCATCAGCA......................................................................................................................................................................................................................................2711.0010010000000
droWil2
TAAG-----AACTAGA--------------------------------------------------------------AAAAGACGGTCGAAAAAACCCA-AA--TTTATCGCCAAA-----------------GTAA-----TA-----TATAATGTCTCTCTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................AGACGGTCGAAAAAACCCA-AA--TTTATC........................................................................................................................................................................................................................................................................................................................2711.00101000
...................................................................................................A-AA--TTTATCGCCAAA-----------------GTAA-----TA-----TATAATG..........................................................................................................................................................................................................................................................................2811.00100010
...............................................................................AAAGACGGTCGAAAAAAC......................................................................................................................................................................................................................................................................................................................................1811.00110000
..........ACTAGA--------------------------------------------------------------AAAAGACGGTCGAAAAA........................................................................................................................................................................................................................................................................................................................................2311.00100010
.AAG-----AACTAGA--------------------------------------------------------------AAAAGACGGTC..............................................................................................................................................................................................................................................................................................................................................2111.00100010
...........CTAGA--------------------------------------------------------------AAAAGACGGTCGAAAAA........................................................................................................................................................................................................................................................................................................................................2211.00100100
..............................................................................................AACCCA-AA--TTTATCGCCAA...................................................................................................................................................................................................................................................................................................................1911.00100010
TAAG-----AACTAGA--------------------------------------------------------------AAAAGACGGT...............................................................................................................................................................................................................................................................................................................................................2111.00100100
...G-----AACTAGA--------------------------------------------------------------AAAAGACGGTC..............................................................................................................................................................................................................................................................................................................................................1911.00100100
................................................................................................CCCA-AA--TTTATCGCCAAA-----------------GT...............................................................................................................................................................................................................................................................................................2011.00100010
................................................................................................................................................A-----TATAATGTCTCTCTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT1911.00100010
droVir3
CT----------------------------------------------------------------------------G----ATGAACTGATGAACCG--AA--TCACACACCAAT-----------------ACGA-----ATGTCATCGCCAAAGTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................GAACTGATGAACCG--AA--TCACA.........................................................................................................................................................................................................................................................................................................................2112.002002000000000000000000000000000000000000000000000000000000000000
...................................................................................ATGAACTGATGAACCG--AA--TCACACACCA....................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
.T----------------------------------------------------------------------------G----ATGAACTGATGAACCG--AA--TCA...........................................................................................................................................................................................................................................................................................................................2311.001100000000000000000000000000000000000000000000000000000000000000
...............................................................................................ACCG--AA--TCACACACCAAT-----------------ACGA-----ATGTC...................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................CACACACCAAT-----------------ACGA-----ATGTCATCGC..............................................................................................................................................................................................................................................................................2511.001000000000000000100000000000000000000000000000000000000000000000
..........................................................................................................CACACACCAAT-----------------ACGA-----ATGTCAT.................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................CAAT-----------------ACGA-----ATGTCATCGCCAAAG.........................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000100
.....................................................................................GAACTGATGAACCG--AA--TCACACACC.....................................................................................................................................................................................................................................................................................................................2511.001010000000000000000000000000000000000000000000000000000000000000
CT----------------------------------------------------------------------------G----ATGAACTGATGAACCG--AA--..............................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
..................................................................................................G--AA--TCACACACCAAT-----------------ACGA-----ATGTC...................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................ACACCAAT-----------------ACGA-----ATGTCATCGCCAAA..........................................................................................................................................................................................................................................................................2611.001000000000000001000000000000000000000000000000000000000000000000
......................................................................................................A--TCACACACCAAT-----------------ACGA-----ATGTCATC................................................................................................................................................................................................................................................................................2511.001000000000000001000000000000000000000000000000000000000000000000
.........................................................................................TGATGAACCG--AA--TCACACACCA....................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................G----ATGAACTGATGAACCG--AA--TCACACACCA....................................................................................................................................................................................................................................................................................................................2911.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................CGA-----ATGTCATCGCCAAAGT........................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................ATGAACTGATGAACCG--AA--T.............................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000010000000000000000000000000000000000000000
........................................................................................................................................GA-----ATGTCATCGCCAAAGTA.......................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................CACCAAT-----------------ACGA-----ATGTCATCGC..............................................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
.............................................................................................GAACCG--AA--TCACACACCAAT-----------------ACGA-----AT......................................................................................................................................................................................................................................................................................2611.001000000000000001000000000000000000000000000000000000000000000000
droMoj3
AC----------------------------------------------------------------------------A----CCACCAGCAGCAACAG-----------------------------------------------------------------------------------------------------GAGCAACAGCAGCAAC----------------ACGC--CAATTGGTTAGCGTAC--AAT-----------AAT-TGTGCCTACGATTTAACTAGCAACAGTGCAA----CAGCAGCAGCAGCAGCGGCGGCCGCAGCAG--CAAC------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................AGCAACAG-----------------------------------------------------------------------------------------------------GAGCAACAGCAGC..................................................................................................................................................................................................................2172.2916900070
...........................................................................................AGCAACAG-----------------------------------------------------------------------------------------------------GAGCAACAGCAGCA.................................................................................................................................................................................................................2262.1713150052
...........................................................................................AGCAACAG-----------------------------------------------------------------------------------------------------GAGCAACAGCAG...................................................................................................................................................................................................................2071.148011105
...........................................................................................AGCAACAG-----------------------------------------------------------------------------------------------------GAGCAACAGCAGCAA................................................................................................................................................................................................................2311.001100000
..........................................................................................CAGCAACAG-----------------------------------------------------------------------------------------------------GAGCAACAGCAGC..................................................................................................................................................................................................................2250.201000010
............................................................................................GCAACAG-----------------------------------------------------------------------------------------------------GAGCAACAGCAGCA.................................................................................................................................................................................................................2160.171100000
............................................................................................................................................................................................................................................................................................................TGCAA----CAGCAGCAGCAGCAGCG.................................................................................................2270.141100000
............................................................................................GCAACAG-----------------------------------------------------------------------------------------------------GAGCAACAGCAG...................................................................................................................................................................................................................1970.141100000
.............................................................................................CAACAG-----------------------------------------------------------------------------------------------------GAGCAACAGCAGC..................................................................................................................................................................................................................1990.111100000
.................................................................................................AG-----------------------------------------------------------------------------------------------------GAGCAACAGCAGCAAC----------------A..............................................................................................................................................................................................19120.081010000
...........................................................................................AGCAACAG-----------------------------------------------------------------------------------------------------GAGCAACAGCAC...................................................................................................................................................................................................................20180.061000001
..............................................................................................................................................................................................................................................................................................................CAA----CAGCAGCAGCAGCAGCGGC...............................................................................................22200.051000010
droGri2
A----------------------------------------------------------------------------------GGAGCAGGAGGAGCA-----------------------------------------------------------------------------------------------------------GCAGCAGCAGC-----------------AGCAGCAGCGGG------AGC--AGG-----------A----------------------------------------------------------GCAGCAGCAG--CAGA--T-----------------------------------GCTTAGCTTTGATAACAATGATG---CC-----ATATCCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......................................................................................................................................................................................................................GC-----------------AGCAGCAGCGGG------AGC--A......................................................................................................................................................................1882.8823221
......................................................................................................................................................................................................................GC-----------------AGCAGCAGCGGG------AGC--AGG-----------A----------------------------------------------------------GC............................................................................................2320.50101
.....................................................................................................................................................................................................................AGC-----------------AGCAGCAGCGGG------AGC--A......................................................................................................................................................................1980.38303
......................................................................................................................................................................................................................GC-----------------AGCAGCAGCGGG------AGC--AG.....................................................................................................................................................................1980.13101
.....................................................................................................................................................................................................................AGC-----------------AGCAGCAGCGGG------AGC--.......................................................................................................................................................................18100.10101
......................................................................................................................................................................................................................GC-----------------AGCAGCAGCGGG------AGC--AC.....................................................................................................................................................................19200.05110
...........................................................................................AGGAGCA-----------------------------------------------------------------------------------------------------------GCAGCAGCAGC-----------------AGC...........................................................................................................................................................................................21200.05110
droAna3
TC----------------------------------------------------------------------------A----ACAGTCAAAGGAACAA--TG--TCACCCGCCAAA-----------------CTAA-----CTTTAATCGTAATATCTCCTCTCTATGTTCGAGCCAC---C---------------------CCA--------CCAGCAGGAAGAGCTGCTGCCTCCATGAG------GCACTCGCATTTACCCAACAACC---GC----------------------CCGA----AAAACAAAAAAACAACAAAAAGCCAACACA--GGACACTG--------CATGGACTGTCAACATGG------CCCGCTGGATCCAA--TA-----------------TCTCGTCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................................................................................A--GGACACTG--------CATGGACTGTC.......................................................2011.001010000
........................................................................................CAAAGGAACAA--TG--TCACCCGCCAAA-----------------CTAA-----........................................................................................................................................................................................................................................................................................2911.001010000
..........................................................................................................................................................................................................................................................................................................................................GCCAACACA--GGACACTG--------CATGG.............................................................2211.001010000
..................................................................................................................................................................................................................................................................CATTTACCCAACAACC---GC----------------------CC........................................................................................................................2011.001010000
...........................................................................................................................................................................................................................................................................................................................................................TG--------CATGGACTGTCAACATGG------CCCGCTG...................................2711.001100000
................................................................................................................................................................................................................................................................................................................................................ACA--GGACACTG--------CATGGAC...........................................................1811.001010000
...........................................................................................................................................................................................................................................................................................................................................................................CTGTCAACATGG------CCCGCTGGATC...............................2311.001100000
........................................................................................CAAAGGAACAA--TG--TCACCCGC......................................................................................................................................................................................................................................................................................................................2111.001010000
............................................................................................................................................................................................................................................CTCCATGAG------GCACTCGCATTTACCCAA..........................................................................................................................................................2711.001010000
......................................................................................GTCAAAGGAACAA--TG--TCACCCGC......................................................................................................................................................................................................................................................................................................................2311.001010000
..........................................................................................................................................................................................................................AGCAGGAAGAGCTGCTGCCTCC.......................................................................................................................................................................................2211.001010000
.................................................................................................AA--TG--TCACCCGCCAAA-----------------CTAA-----CT......................................................................................................................................................................................................................................................................................2211.001010000
............................................................................................................................................................................................................................................CTCCATGAG------GCACTCGCATTTACC.............................................................................................................................................................2411.001000001
.............................................................................................................................................................................................................................................................................................................................................AACACA--GGACACTG--------CATGGACT..........................................................2211.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................GG------CCCGCTGGATCCAA--TA-----------------TCTC...2211.001100000
.........................................................................................................................................................................................................................................................................................................................................AGCCAACACA--GGACACTG--------CA................................................................2011.001000100
................................................................................................................................................................................................................................................................................................................A----AAAACAAAAAAACAACAA................................................................................................1980.131010000
.....................................................................................................................................................................................................................................................................................................................AAAACAAAAAAACAACAAA...............................................................................................1990.111010000
.......................................................................................................................................................................................................................................................................................................................................AAAGCCAACACA--GGACGA............................................................................18170.061010000
droBip1
TC----------------------------------------------------------------------------A----ACAGTCAAAGGAACAA--TG--TCACCCGCCAAA-----------------CTAA-----CTTTAATCGTACTATTTCCTCTCTATGTTTGAGCCAGCAAC---------------------CCA--------GCATCAGGGAGAGCTGATGCCTCCATGAG------GCACTCGCATTTACCCAACAACC---GC----------------------CC------------GAAAAACAAAAAC-CCCA-AAACG--AAACACTG--------CATG-ACAGTCCACCGTG------CTCGCAGGATTCAA--TATCCTT-----------------TTSizeHit CountTotal NormTotal
No Reads
droKik1
GG----------------------------------------------------------------------------A----GCAGTCGAATGAACAA--AA--TCGCCCGCCAAA-----------------CTAAACTAATCGTAAACATAATGT-TTCTCTCCGCATTCAG-TCAA---A---------------------CCA--------GCAGCAA--------GAAGCCTCTGTGAG------GAGCCCGCATTTACACAGTATCCCACATCCGACATCGAAAAGACAACAAAG---------------------------------------------------------------------CATG---CAACTAGCGGGAATAGA--AGTCATCCA--ATT-----TGTTGTGSizeHit CountTotal NormTotal
No Reads
droFic1
------------------------------------------------------------------------------A----GCAGTCGAATGAACAAACAAACACGCCCGCCAAA-----------------CTAA-----TTGTAATCGCAATGTTTTCTCTTCAAAATATG-T------A---------------------CCA--------GC------------AGAAGCCTCTGTGAG------GAGCCCGCATTTAAACTAT---T---GT----TAT----------------C-AAGAACAACAACAACAACAAAAACACCCAAAAAGACA-----------------------------ACATG------CTAGCTGGATTCGATAAGTCATTCA---TC-----ACTTGTGSizeHit CountTotal NormTotal
No Reads
droEle1
TCCGCAGG--ATCAGCAGGGATCAGCAGGGATCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGCAGTA----GCAGTCGAATGAACAAACAAA-TCGCCCGCCAAA-----------------CTAA-----TCGTAATAGTAATGTTTTCACTCCGAAAC-----------A---------------------CCA--------GCAGC---------AGAAGCCTCTGTGAG------AAGCCCGCATTTAA-----------------------------------------------------------------------------------------------------------------------------ATCGA--AGTCATTCA----------TATTGTGSizeHit CountTotal NormTotal
No Reads
droRho1
------------------------------------------------------------------------------A----GCAGTCAAATGAACAAAAAA--TCGCCCGCCAAA-----------------CTAA-TTA-ATGTAATCGTAATATTTTCTCTCCGAAAC-----------A---------------------CCA--------GCAAC---------AGAAGCCTCTGTGAG------GAGCCCGCATTTAAACAACATAT---GT-----AT----------------C----------------A---ATAATACCCA-AAACATA-----------------------------ACGTG------CTAGCTGGAATCGA--AGTCATTCA----------TCTTGTGSizeHit CountTotal NormTotal
No Reads
droBia1
GC----------------------------------------------------------------------------A----GCATTCAAATGAACAAA-AA--TCGCCCGCCAAA-----------------CTAA-----TTGTAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
------------------------------------------------------------------------------A----GCAGTCGAATGAACAAA-AA--TCGCCCGCCAAA-----------------CTAA-----TCGTAATCGTAATGTTTTCTCTTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
------------------------------------------------------------------------------A----GCAGTCGGATGAACAAATAA--ACGCCCGCCAAA-----------------TTAA-----TTGTAATCGTAATGTTTTCTCTTCAAAAT-----------A---------------------CCA--------GCA---T--------AAAACCTCTGTGAG------GAGTCCGCATTTAAACAAT---C---TA----------------------CC----------------AACAA---AACCTA-AAAGACA-----------------------------ACGTG------CTTGCTGGAATCGA--TGTCGTTCTTACTTTCCTACGCTGTGSizeHit CountTotal NormTotal
No Reads
dm3
GC----------------------------------------------------------------------------A----GTAGTCGAATGATCAAATAA--TCGCCCGCCAAA-----------------TTAA-----TTGTAATCGTAATTT-TTCTTTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................CGCCAAA-----------------TTAA-----TTGTAATCGTAATT..........................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................A----GTAGTCGAATGATCAAATAA--T.............................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................CGCCAAA-----------------TTAA-----TTGTAATCGTAATTT-........................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........................................................................................CGAATGATCAAATAA--TCGCC.........................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................AAA-----------------TTAA-----TTGTAATCGTAAT...........................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................CGAATGATCAAATAA--TCGCCCGC......................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................GAATGATCAAATAA--TCGCCC........................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................AAATAA--TCGCCCGCCAAA-----------------TTA..............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................AA--TCGCCCGCCAAA-----------------TTAA-----TTGT....................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GC----------------------------------------------------------------------------A----GTAGTCGAATGATCA.....................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
........................................................................................CGAATGATCAAATAA--TCGCCCG.......................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
......................................................................................................................................TTAA-----TTGTAATCGTAATTT-TTCTTTC.................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................CGCCAAA-----------------TTAA-----TTGTAATCGTAATTT-TT......................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................GTCGAATGATCAAATAA--TCGCCCGCC.....................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................GATCAAATAA--TCGCCCGCCAAA-----------------.................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TTCGCAGGGAATCAGC--------------------------------------------------------------A----GTAGTCGAATGATCAAATAA--TCGCCCGCCAAA-----------------TTAA-----TTGTAATCGTAATGATTTTTCTCCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................GTAGTCGAATGATCAAATAA--TCGCC.........................................................................................................................................................................................................................................................................................................................2513.00300300000000000000
...................................................................................GTAGTCGAATGATCAAATAA--TCGCCC........................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
...............................................................................................................GCCAAA-----------------TTAA-----TTGTAATCGTAAT...........................................................................................................................................................................................................................................................................2311.00100000010000000000
...........TCAGC--------------------------------------------------------------A----GTAGTCGAATGATCAAATA.................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
....CAGGGAATCAGC--------------------------------------------------------------A----GTAGTCGAAT..........................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
............CAGC--------------------------------------------------------------A----GTAGTCGAATGATC......................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
..............................................................................A----GTAGTCGAATGATCAAATAA--TCGCCC........................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
............CAGC--------------------------------------------------------------A----GTAGTCGAATGATCAAA...................................................................................................................................................................................................................................................................................................................................2211.00100000000000100000
.........AATCAGC--------------------------------------------------------------A----GTAGTCGAATGATC......................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
..............................................................................A----GTAGTCGAATGATCAAATAA--TCGCC.........................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
...........TCAGC--------------------------------------------------------------A----GTAGTCGAATGATCAAATAA--T.............................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
droSec2
GC----------------------------------------------------------------------------A----GTAGTCGAATGATCAAATAA--TCGCCCGCCAAA-----------------TTAA-----TTGTAATCGTAATGATTTTTCTCCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................GAATGATCAAATAA--TCGCCCGCC.....................................................................................................................................................................................................................................................................................................................2311.0010010
droYak3
AG----------------------------------------------------------------------------------C--------------------------------------------------------------------------------------------CAA---TCCGGCGGCAGCAGCAGCAGCAACAGCAGCAGC-----------------CGCCTTCAACGG------CA-C-------------------------CAGCA---ACTTGATAATCATCGAG----CCGCAGCAGCAACAGCAACAGCAGCAGCAG--CCGC--C------------------------------------------------------------------------GCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................................................................AGCAGCAACAGCAGCAGC-----------------CGCCTTCAAC....................................................................................................................................................................................2811.00101000000000
................................................................................................................................................................................................................................................................................................ACTTGATAATCATCGAG----CCGCAGC...........................................................................................................2411.00100100000000
.................................................................................................................................................................................................................CAGCAGC-----------------CGCCTTCAACGG------CA-C-------------------------CAGC...........................................................................................................................................2611.00100010000000
................................................................................................................................................................................................................................................................................................................G----CCGCAGCAGCAACAGCAACAGCA...........................................................................................2440.25101000000000
...............................................................................................................................................................................................................................................................................................................AG----CCGCAGCAGCAACAGCA.................................................................................................19110.09101000000000
..........................................................................................................................................................................................GGCGGCAGCAGCAGCAGCA..........................................................................................................................................................................................................................19180.06101000000000
..........................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAACAGCAGCAGCAG--C.................................................................................26200.05101000000000
...............................................................................................................................................................................................CAGCAGCAGCAGCAACAGCAGC..................................................................................................................................................................................................................22200.05101000000000
................................................................................................................................................................................................................................................................................................................................ACAGCAACAGCAGCAGCAG--C.................................................................................20200.05100100000000
droEre2
TTCACAGGGGATAAGC--------------------------------------------------------------A----GTAGTCGAATGATCAAATAA--TCGCCCGCCAAA-----------------TTAA-----TTGTAATCATAATGTTTTCTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.TCACAGGGGATAAGC--------------------------------------------------------------A----GT..................................................................................................................................................................................................................................................................................................................................................1811.0010000100
............AAGC--------------------------------------------------------------A----GTAGTCGAATGATC......................................................................................................................................................................................................................................................................................................................................1911.0010100000
.............AGC--------------------------------------------------------------A----GTAGTCGAATGATCA.....................................................................................................................................................................................................................................................................................................................................1911.0010001000
.........GATAAGC--------------------------------------------------------------A----GTAGTCGAATGATCAA....................................................................................................................................................................................................................................................................................................................................2411.0011000000

Generated: 06/08/2015 at 03:59 PM