ID:

dpe_13

 Coordinate:

scaffold_1:7140292-7140356 +

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-33.9 -33.4 -33.2

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GGCCTGTGCCTGTGCTTGAGAGCCCACCCACCCGAATAAGGCAGCGAATTACTTGGGCCAGGGGAATGCAAACTGTGATCGCAATGCAAAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCTCAAGTAAACGCCACGTGGGTTTGAGAGTCTTGGACTCTC

***********************************...(((((..((((.((((((((((((.((..(((((((......((...))....))))))))).)))))))))))).))))...)))))...************************************ 		Read size # Mismatch Hit Count Total Norm Total V111

male body		 M042

female body

 M021

embryo

 V042

embryo

 V057

head

 V050

head
.............................................................................................TTTGTTCGTTTGGCTTAAGTT................................................... 21 0 1 17598.00 17598 11095 4343 1855 100 108 97
.............................................................................................TTTGTTCGTTTGGCTTAAGTTA.................................................. 22 0 1 11938.00 11938 6423 3354 1803 228 66 64
.............................................................................................TTTGTTCGTTTGGCTTAAGT.................................................... 20 0 1 2033.00 2033 1249 430 303 21 22 8
.............................................................................................TTTGTTCGTTTGGCTTAAGTTT.................................................. 22 1 1 1776.00 1776 1233 484 44 7 5 3
.............................................................................................TTTGTTCGTTTGGCTTAAG..................................................... 19 0 1 801.00 801 419 118 244 5 8 7
.............................................................................................TTTGTTCGTTTGGCTTAAGTTAA................................................. 23 1 1 788.00 788 469 110 197 2 6 4
..............................................................................................TTGTTCGTTTGGCTTAAGTT................................................... 20 0 1 401.00 401 39 360 2 0 0 0
..............................................................................................TTGTTCGTTTGGCTTAAGTTA.................................................. 21 0 1 336.00 336 36 290 9 0 0 1
.............................................................................................TTTGTTCGTTTGGCTTAAGTTAAA................................................ 24 2 1 228.00 228 76 4 147 1 0 0
.............................................................................................TTTGTTCGTTTGGCTTAAGTTAT................................................. 23 0 1 198.00 198 123 59 15 1 0 0
.............................................................................................TTTGTTCGGTTGGCTTAAGTT................................................... 21 1 1 184.00 184 1 180 2 0 1 0
.............................................................................................TTTGTTCGGTTGGCTTAAGTTA.................................................. 22 1 1 143.00 143 2 140 0 1 0 0
.............................................................................................TTTGTTCGTTTGGCTTAA...................................................... 18 0 1 78.00 78 0 2 74 2 0 0
.............................................................................................TTTGTTCGATTGGCTTAAGTT................................................... 21 1 1 78.00 78 3 75 0 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTAAGTTTT................................................. 23 1 1 61.00 61 49 9 3 0 0 0
..............................................................................................TTGTTCGTTTGGCTTAAGTTT.................................................. 21 1 1 51.00 51 3 48 0 0 0 0
.............................................................................................TTTGTTCGATTGGCTTAAGTTA.................................................. 22 1 1 48.00 48 1 46 0 1 0 0
.............................................................................................TTTGTTCGCTTGGCTTAAGTT................................................... 21 1 1 42.00 42 8 32 1 0 0 1
.............................................................................................TTTGTTCGTTTGGCTTAAGTTC.................................................. 22 1 1 38.00 38 11 11 14 1 1 0
..............................................................................................TTGTTCGTTTGGCTTAAGT.................................................... 19 0 1 35.00 35 2 33 0 0 0 0
.............................................................................................TTTGTTCGCTTGGCTTAAGTTA.................................................. 22 1 1 32.00 32 5 25 1 0 1 0
.............................................................................................TTTTTTCGTTTGGCTTAAGTT................................................... 21 1 1 29.00 29 9 5 14 0 0 1
.............................................................................................TTTGTTCGTTTGGCTTAAGTA................................................... 21 1 1 28.00 28 19 9 0 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTAAGTTAC................................................. 23 1 1 27.00 27 11 4 12 0 0 0
................................................................................................TTTCGTTTGGCTTAAGTTA.................................................. 19 1 1 26.00 26 5 0 21 0 0 0
...............................................................................................TGTTCGTTTGGCTTAAGTTA.................................................. 20 0 1 26.00 26 2 24 0 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTAAGA.................................................... 20 1 1 25.00 25 9 3 13 0 0 0
.............................................................................................TTTGTTCGTTTGTCTTAAGTT................................................... 21 1 1 25.00 25 20 1 1 0 2 1
.............................................................................................TTTGTTCGTTTGGCTTAAGTTG.................................................. 22 1 1 24.00 24 10 14 0 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTAAGG.................................................... 20 1 1 22.00 22 0 1 21 0 0 0
.............................................................................................TTTTTTCGTTTGGCTTAAGTTA.................................................. 22 1 1 21.00 21 5 3 12 0 0 1
.............................................................................................TTTGTTCGGTTGGCTTAAGTTT.................................................. 22 2 1 20.00 20 1 19 0 0 0 0
.............................................................................................GTTGTTCGTTTGGCTTAAGTT................................................... 21 1 1 20.00 20 1 19 0 0 0 0
...............................................................................................TGTTCGTTTGGCTTAAGTT................................................... 19 0 1 20.00 20 5 15 0 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTAAGTC................................................... 21 1 1 20.00 20 5 0 15 0 0 0
.............................................................................................TTTGTTCTTTTGGCTTAAGTT................................................... 21 1 1 20.00 20 10 4 6 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTAATTT................................................... 21 1 1 19.00 19 9 7 2 0 0 1
...............................................................................................TTTTCGTTTGGCTTAAGTT................................................... 19 1 1 18.00 18 6 1 11 0 0 0
.............................................................................................TTTGCTCGTTTGGCTTAAGTT................................................... 21 1 1 18.00 18 13 4 1 0 0 0
...............................................................................................TTTTCGTTTGGCTTAAGTTA.................................................. 20 1 1 17.00 17 3 0 14 0 0 0
.............................................................................................TTTGTTCGGTTGGCTTAAGT.................................................... 20 1 1 17.00 17 0 17 0 0 0 0
..................................................ACTTGGGCCAGGGGAATGCAAACT........................................................................................... 24 0 1 17.00 17 2 5 3 6 1 0
................................................................................................GTTCGTTTGGCTTAAGTTA.................................................. 19 0 1 16.00 16 9 6 0 1 0 0
..............................................................................................TTTTTCGTTTGGCTTAAGTTA.................................................. 21 1 1 16.00 16 0 1 15 0 0 0
..............................................................................................TTGTTCGTTTGGCTTAAGTTAA................................................. 22 1 1 16.00 16 3 12 1 0 0 0
.............................................................................................CTTGTTCGTTTGGCTTAAGTT................................................... 21 1 1 16.00 16 13 3 0 0 0 0
.............................................................................................TTTGCTCGTTTGGCTTAAGTTA.................................................. 22 1 1 15.00 15 11 0 2 2 0 0
................................................................................................GTTCGTTTGGCTTAAGTT................................................... 18 0 1 15.00 15 5 7 3 0 0 0
.............................................................................................TTTGTTCGTTTGTCTTAAGTTA.................................................. 22 1 1 14.00 14 8 0 3 1 1 1
.............................................................................................TTTGTTCGTTTGGCTTAAGCT................................................... 21 1 1 14.00 14 10 2 2 0 0 0
.............................................................................................TTTGTTCGATTGGCTTAAGTTT.................................................. 22 2 1 14.00 14 0 14 0 0 0 0
.............................................................................................TTTGTTCGTTCGGCTTAAGTT................................................... 21 1 1 14.00 14 10 3 1 0 0 0
.............................................................................................TCTGTTCGTTTGGCTTAAGTT................................................... 21 1 1 13.00 13 9 3 1 0 0 0
..............................................................................................TTGTTCGTGTGGCTTAAGTT................................................... 20 1 1 13.00 13 0 13 0 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTAAGTAA.................................................. 22 1 1 13.00 13 6 4 3 0 0 0
.............................................................................................TTTGTTCGTTTTGCTTAAGTT................................................... 21 1 1 13.00 13 10 0 1 0 1 1
.............................................................................................TTTGTTCGTTTGACTTAAGTT................................................... 21 1 1 12.00 12 7 1 3 0 0 1
.............................................................................................TTTGTTCGTTTGGCTTAATTTA.................................................. 22 1 1 12.00 12 1 2 2 2 1 4
.............................................................................................TTTCTTCGTTTGGCTTAAGTTA.................................................. 22 1 1 12.00 12 4 1 6 0 1 0
................................................................................................TTTCGTTTGGCTTAAGTT................................................... 18 1 2 11.00 22 11 1 10 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTAGGTT................................................... 21 1 1 11.00 11 11 0 0 0 0 0
.............................................................................................TTTGTTCGTTTGGCCTAAGTTA.................................................. 22 1 1 11.00 11 3 3 3 1 1 0
.............................................................................................TTTGTTCGTTTGGCTTAAGTTAG................................................. 23 1 1 11.00 11 5 2 3 1 0 0
.............................................................................................TTTGTTCGTTTGGCTTAGGTTA.................................................. 22 1 1 11.00 11 5 1 3 0 1 1
..............................................................................................TTGTTCGTTTGGCTTAAG..................................................... 18 0 1 10.00 10 0 10 0 0 0 0
.............................................................................................CTTGTTCGTTTGGCTTAAGTTA.................................................. 22 1 1 10.00 10 5 1 4 0 0 0
.............................................................................................TTTGTTCGTTTGACTTAAGTTA.................................................. 22 1 1 9.00 9 5 3 1 0 0 0
.............................................................................................TTTGTTCGTCTGGCTTAAGTT................................................... 21 1 1 9.00 9 6 2 0 0 1 0
.............................................................................................GTTGTTCGTTTGGCTTAAGTTA.................................................. 22 1 1 9.00 9 0 8 0 1 0 0
.............................................................................................TTTGTTCGTTTGGCTTAAGCTA.................................................. 22 1 1 9.00 9 3 0 3 2 0 1
.............................................................................................TTTGTTTGTTTGGCTTAAGTT................................................... 21 1 1 9.00 9 7 1 1 0 0 0
.............................................................................................TTTATTCGTTTGGCTTAAGTT................................................... 21 1 1 9.00 9 9 0 0 0 0 0
.............................................................................................TTTGTTCTTTTGGCTTAAGTTA.................................................. 22 1 1 9.00 9 5 1 2 0 0 1
.............................................................................................TCTGTTCGTTTGGCTTAAGTTA.................................................. 22 1 1 9.00 9 5 2 2 0 0 0
.............................................................................................TTTCTTCGTTTGGCTTAAGTT................................................... 21 1 1 9.00 9 1 0 8 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTAAGC.................................................... 20 1 1 8.00 8 1 0 7 0 0 0
.............................................................................................TTTGTTAGTTTGGCTTAAGTT................................................... 21 1 1 8.00 8 7 1 0 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTAAGTTAAAA............................................... 25 3 1 8.00 8 1 0 7 0 0 0
.............................................................................................TTTGTTCGTTTGCCTTAAGTT................................................... 21 1 1 8.00 8 2 3 3 0 0 0
.............................................................................................TTTGTCCGTTTGGCTTAAGTTA.................................................. 22 1 1 7.00 7 3 1 0 0 0 3
..............................................................................................TTGTTCGTATGGCTTAAGTTA.................................................. 21 1 1 7.00 7 0 7 0 0 0 0
.............................................................................................TTTGTTCGTTTGGATTAAGTTA.................................................. 22 1 1 7.00 7 4 0 1 1 0 1
..............................................................................................TTGTTCGTGTGGCTTAAGTTA.................................................. 21 1 1 7.00 7 0 7 0 0 0 0
.............................................................................................TTTGTTCGTTTGGTTTAAGTT................................................... 21 1 1 7.00 7 7 0 0 0 0 0
.............................................................................................TTTGTTCGCTTGGCTTAAGT.................................................... 20 1 1 7.00 7 2 4 1 0 0 0
.............................................................................................TTTGTTCGCTTGGCTTAAGTTT.................................................. 22 2 1 6.00 6 2 4 0 0 0 0
.............................................................................................TTTGTTCGTTTGGCCTAAGTT................................................... 21 1 1 6.00 6 5 0 1 0 0 0
.............................................................................................TTTGTTCGTTTGGGTTAAGTT................................................... 21 1 1 6.00 6 6 0 0 0 0 0
............................................................................................CTTTGTTCGTTTGGCTTAAGTT................................................... 22 1 1 6.00 6 3 3 0 0 0 0
.............................................................................................TTTGTTCGTTTGCCTTAAGTTA.................................................. 22 1 1 6.00 6 2 1 3 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTAAGTTTA................................................. 23 2 1 6.00 6 3 3 0 0 0 0
..............................................................................................TTTTTCGTTTGGCTTAAGTT................................................... 20 1 1 6.00 6 3 0 3 0 0 0
.............................................................................................ATTGTTCGTTTGGCTTAAGTT................................................... 21 1 1 6.00 6 4 2 0 0 0 0
.............................................................................................TTTGTTCGTTCGGCTTAAGTTA.................................................. 22 1 1 6.00 6 5 1 0 0 0 0
.............................................................................................TTTGTTCGATTGGCTTAAGT.................................................... 20 1 1 6.00 6 0 6 0 0 0 0
.............................................................................................TTTGTTCATTTGGCTTAAGTTA.................................................. 22 1 1 5.00 5 4 0 1 0 0 0
.............................................................................................TTTATTCGTTTGGCTTAAGTTA.................................................. 22 1 1 5.00 5 1 2 2 0 0 0
.............................................................................................TTTGGTCGTTTGGCTTAAGTT................................................... 21 1 1 5.00 5 3 1 0 0 1 0
.............................................................................................TTTGTCCGTTTGGCTTAAGTT................................................... 21 1 1 5.00 5 4 1 0 0 0 0
.............................................................................................TTTGTTCGTTTGGCTAAAGTTA.................................................. 22 1 1 5.00 5 3 0 2 0 0 0
..................................................ACTTGGGCCAGGGGAATGC................................................................................................ 19 0 1 5.00 5 1 1 0 3 0 0
.............................................................................................TTTGTTCGTTTGGCTTAAGTCA.................................................. 22 1 1 5.00 5 4 1 0 0 0 0
.............................................................................................TTTGTTCGGTTGGCTTAAGTTC.................................................. 22 2 1 5.00 5 0 4 0 1 0 0
.............................................................................................TTTGTTCGTTTGGCTTATGTT................................................... 21 1 1 5.00 5 3 0 0 0 1 1
.............................................................................................TTTGTTCGTTTGGCTTGAGTTA.................................................. 22 1 1 5.00 5 4 0 0 0 0 1
.............................................................................................TTTGTTCGTCTGGCTTAAGTTA.................................................. 22 1 1 5.00 5 4 0 1 0 0 0
.............................................................................................TTTGTTCGTTTCGCTTAAGTT................................................... 21 1 1 5.00 5 2 3 0 0 0 0
..............................................................................................TTGTTCGTATGGCTTAAGTT................................................... 20 1 1 5.00 5 0 5 0 0 0 0
.............................................................................................TTTTTTCGTTTGGCTTAAGTTAA................................................. 23 2 1 5.00 5 0 1 4 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTACGTTA.................................................. 22 1 1 5.00 5 3 0 0 1 0 1
.............................................................................................TTTGTTCGTTTGGCTTAAATTA.................................................. 22 1 1 5.00 5 1 3 0 1 0 0
.............................................................................................TTTGTTCGTTTGGCTTAAGGTA.................................................. 22 1 1 5.00 5 0 3 1 1 0 0
.............................................................................................TTTGTTCGTTTGGCTTCAGTTA.................................................. 22 1 1 4.00 4 0 0 0 3 1 0
.............................................................................................TTTGTTTGTTTGGCTTAAGTTA.................................................. 22 1 1 4.00 4 4 0 0 0 0 0
.............................................................................................TTCGTTCGTTTGGCTTAAGTTA.................................................. 22 1 1 4.00 4 3 1 0 0 0 0
.............................................................................................ATTGTTCGTTTGGCTTAAGTTA.................................................. 22 1 1 4.00 4 2 2 0 0 0 0
............................................................................................CTTTGTTCGTTTGGCTTAAGTTA.................................................. 23 1 1 4.00 4 0 4 0 0 0 0
.............................................................................................TTTGTTCGGTTGGCTTAAGTTAA................................................. 23 2 1 4.00 4 1 3 0 0 0 0
.............................................................................................TTTGTTCGTTTAGCTTAAGTT................................................... 21 1 1 4.00 4 3 0 0 1 0 0
............................................................................................TTTTGTTCGTTTGGCTTAAGTT................................................... 22 1 1 4.00 4 0 4 0 0 0 0
.................................................................................................TTCGTTTGGCTTAAGTTA.................................................. 18 0 1 4.00 4 0 1 2 1 0 0
.............................................................................................TTTGTTCGTTTGGCTTAAGTTTAA................................................ 24 3 1 4.00 4 1 1 2 0 0 0
.............................................................................................TTTGTTCCTTTGGCTTAAGTTA.................................................. 22 1 1 4.00 4 0 1 2 0 0 1
............................................................................................GTTTGTTCGTTTGGCTTAAGTTA.................................................. 23 0 1 4.00 4 0 4 0 0 0 0
.............................................................................................TTCTTTCGTTTGGCTTAAGTTA.................................................. 22 2 1 4.00 4 1 0 3 0 0 0
.............................................................................................TTTGTTCGTTTGGATTAAGTT................................................... 21 1 1 4.00 4 3 0 0 0 1 0
.............................................................................................TTTGTTAGTTTGGCTTAAGTTA.................................................. 22 1 1 4.00 4 2 0 1 1 0 0
.............................................................................................TTTGTTCGTTTGGCTTATGTTA.................................................. 22 1 1 4.00 4 2 0 0 1 1 0
.............................................................................................TTTGTTCGTTTGGGTTAAGTTA.................................................. 22 1 1 4.00 4 4 0 0 0 0 0
.............................................................................................TTTGTTCGTTTGGCTCAAGTT................................................... 21 1 1 4.00 4 4 0 0 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTAAGAA................................................... 21 2 2 3.50 7 3 0 3 1 0 0
.............................................................................................TTTGTTCGTTTGGCTTAAGTTCA................................................. 23 2 1 3.00 3 1 2 0 0 0 0
....................................................TTGGGCCAGGGGAATGCAAACT........................................................................................... 22 0 1 3.00 3 1 1 1 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTCAGTT................................................... 21 1 1 3.00 3 0 0 1 2 0 0
................................................................................................TTTCGTTTGGCTTAAGTTAA................................................. 20 2 2 3.00 6 0 1 5 0 0 0
..............................................................................................TTGTTCGTTTGGCTTAAGTTAT................................................. 22 0 1 3.00 3 1 2 0 0 0 0
.............................................................................................TTTGGTCGTTTGGCTTAAGTTT.................................................. 22 2 1 3.00 3 3 0 0 0 0 0
.............................................................................................TTTGTTCGCTTGGCTTAAGTTAA................................................. 23 2 1 3.00 3 0 1 2 0 0 0
...............................................................................................TCTTCGTTTGGCTTAAGTT................................................... 19 1 1 3.00 3 1 0 2 0 0 0
..................................................ACTTGGGCCAGGGGAATGCAAA............................................................................................. 22 0 1 3.00 3 1 1 0 1 0 0
..............................................................................................TTCTTCGTTTGGCTTAAGTTA.................................................. 21 1 1 3.00 3 1 0 2 0 0 0
..............................................................................................TTGTTCGTCTGGCTTAAGTT................................................... 20 1 1 3.00 3 0 3 0 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTAAGGT................................................... 21 1 1 3.00 3 1 0 2 0 0 0
.............................................................................................TTTGTTCGTTTGGCTCAAGTTA.................................................. 22 1 1 3.00 3 2 0 1 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTAAGTTTTT................................................ 24 1 1 3.00 3 2 1 0 0 0 0
..............................................................................................TTGTTCGTTTGGCTTAAGTTC.................................................. 21 1 1 3.00 3 0 3 0 0 0 0
.............................................................................................TTTGTCCGTTTGGCTTAAGTTAA................................................. 23 2 1 3.00 3 3 0 0 0 0 0
................................................................................................GTTCGTTTGGCTTAAGTTT.................................................. 19 1 1 3.00 3 2 1 0 0 0 0
.................................................TACTTGGGCCAGGGGAATGCA............................................................................................... 21 0 1 3.00 3 3 0 0 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTTAGTT................................................... 21 1 1 3.00 3 3 0 0 0 0 0
.........................................................................................GATCTTTGTTCGTTTGGCTTAAGTT................................................... 25 3 1 3.00 3 3 0 0 0 0 0
.............................................................................................TTTGTTCGTTTGACTTAAGTTT.................................................. 22 2 1 3.00 3 3 0 0 0 0 0
.............................................................................................TTTGATCGTTTGGCTTAAGTT................................................... 21 1 1 3.00 3 0 1 0 0 1 1
.............................................................................................TTTGTTCGTTTGGCTTAAGTTAAG................................................ 24 2 1 3.00 3 2 1 0 0 0 0
.............................................................................................TTTGTTCGCTTGGCTTAAGTTC.................................................. 22 2 1 3.00 3 1 2 0 0 0 0
.............................................................................................TTTGTGCGTTTGGCTTAAGTTA.................................................. 22 1 1 3.00 3 0 1 1 1 0 0
.............................................................................................TTTGTTCGTTTGGCTTAAC..................................................... 19 1 1 3.00 3 0 1 2 0 0 0
.............................................................................................TTCGTTCGTTTGGCTTAAGTT................................................... 21 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................TTTATTCGTTTGGCTTAAGT.................................................... 20 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................TTTGTTCGTTTCGCTTAAGTTA.................................................. 22 1 1 2.00 2 1 0 0 0 0 1
.............................................................................................TTTGTTCGTTTGGTTTAAGTTA.................................................. 22 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................TTTGTTCGTTTGGATTAAGT.................................................... 20 1 1 2.00 2 1 1 0 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTAAGAT................................................... 21 1 1 2.00 2 1 0 1 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTAATT.................................................... 20 1 1 2.00 2 1 0 0 0 0 1
.............................................................................................TTTGTTCGTTTGGCTTAGGTTAA................................................. 23 2 1 2.00 2 1 0 1 0 0 0
...............................................................................................TGTTCGTTTGGCTTAAGT.................................................... 18 0 1 2.00 2 0 1 1 0 0 0
..................................................ACTTGGGCCAGGGGAATGCAA.............................................................................................. 21 0 1 2.00 2 1 1 0 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTAAGATT.................................................. 22 2 1 2.00 2 2 0 0 0 0 0
.............................................................................................TTTGTTCATTTGGCTTAAGTT................................................... 21 1 1 2.00 2 1 1 0 0 0 0
..............................................................................................TTGTTCGTTTGGCTTAAGTTAAA................................................ 23 2 1 2.00 2 0 0 2 0 0 0
.............................................................................................TTTGTTCGTTAGGCTTAAGT.................................................... 20 1 1 2.00 2 0 2 0 0 0 0
.............................................................................................TTTGCTCGTTTGGCTTAAGT.................................................... 20 1 1 2.00 2 1 0 1 0 0 0
..............................................................................................TTGTTCGTCTGGCTTAAGTTA.................................................. 21 1 1 2.00 2 0 2 0 0 0 0
............................................................................................ATTTGTTCGTTTGGCTTAAGTT................................................... 22 1 1 2.00 2 0 2 0 0 0 0
.............................................................................................TTTGTTCGATTGGCTTAAGTTAA................................................. 23 2 1 2.00 2 0 2 0 0 0 0
.............................................................................................TTTGTTCGTTTGCCTTAAGTTAA................................................. 23 2 1 2.00 2 1 0 1 0 0 0
.............................................................................................TTTGTTCGTTTAGCTTAAGTTA.................................................. 22 1 1 2.00 2 1 1 0 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTAAGAAA.................................................. 22 2 1 2.00 2 1 0 1 0 0 0
.............................................................................................TTTGTTCGTTAGGCTTAAGTT................................................... 21 1 1 2.00 2 2 0 0 0 0 0
...............................................................................................TGTTCGTTTGGCTTAAGTTT.................................................. 20 1 1 2.00 2 1 1 0 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTAAGTTGA................................................. 23 2 1 2.00 2 1 1 0 0 0 0
............................................................................................GTTTGTTCGTTTGGCTTAAGT.................................................... 21 0 1 2.00 2 0 0 2 0 0 0
.............................................................................................GTTGTTCGTTTGGCTTAAGTTT.................................................. 22 2 1 2.00 2 0 2 0 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTACGTT................................................... 21 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................TTTGTTGGTTTGGCTTAAGTTA.................................................. 22 1 1 2.00 2 2 0 0 0 0 0
............................................................................................CTTTGTTCGTTTGGCTTAAGTTT.................................................. 23 2 1 2.00 2 1 1 0 0 0 0
.......................................................................................AAAAAGTTTGTTCGTTTGGCTTAAGT.................................................... 26 0 1 2.00 2 0 0 2 0 0 0
.............................................................................................TTTGTTTGTTTGGCTTAAGT.................................................... 20 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................TTTGTTCGTTTCGCTTAAGT.................................................... 20 1 1 2.00 2 0 0 0 2 0 0
.............................................................................................TTTGTTCGTTTGGCTTTAGTTA.................................................. 22 1 1 2.00 2 1 0 0 1 0 0
.............................................................................................TTTGTTCGTTTGGCTTAACTTA.................................................. 22 1 1 2.00 2 1 1 0 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTAACTT................................................... 21 1 1 2.00 2 1 0 0 1 0 0
..............................................................................................TTTTTCGTTTGGCTTAAGT.................................................... 19 1 2 2.00 4 0 0 4 0 0 0
............................................................................................TTTTGTTCGTTTGGCTTAAGTTA.................................................. 23 1 1 2.00 2 0 2 0 0 0 0
.............................................................................................TTTGTTCGTTGGGCTTAAGTT................................................... 21 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................TCTGTTCGTTTGGCTTAAGTTT.................................................. 22 2 1 2.00 2 2 0 0 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTAAGTG................................................... 21 1 1 2.00 2 1 0 1 0 0 0
.............................................................................................TTTGTTCTTTTGGCTTAAGT.................................................... 20 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTAAGTTATT................................................ 24 0 1 2.00 2 1 0 1 0 0 0
............................................................................................TTTTGTTCGTTTGGCTTAAG..................................................... 20 1 1 2.00 2 0 2 0 0 0 0
.............................................................................................TTTGGTCGTTTGGCTTAAGTTA.................................................. 22 1 1 2.00 2 1 0 1 0 0 0
.............................................................................................TTTGTTCCTTTGGCTTAAGTTAA................................................. 23 2 1 2.00 2 0 0 2 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTGAGTT................................................... 21 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................TTTGTTCGTTTTGCTTAAGT.................................................... 20 1 1 2.00 2 1 1 0 0 0 0
.............................................................................................CTTGTTCGTTTGGCTTAAGTTT.................................................. 22 2 1 2.00 2 2 0 0 0 0 0
.............................................................................................TTTGTTAGTTTGGCTTAAGTTT.................................................. 22 2 1 2.00 2 1 1 0 0 0 0
.............................................................................................TTTGTCCGTTTGGCTTAAGT.................................................... 20 1 1 2.00 2 2 0 0 0 0 0
............................................................................................GTTTGTTCGTTTGGCTTAAGTT................................................... 22 0 1 2.00 2 0 2 0 0 0 0
.............................................................................................TTTGTTCGTTTGGCCTAAGT.................................................... 20 1 1 2.00 2 1 0 1 0 0 0
.............................................................................................TTTGTGCGTTTGGCTTAAGTT................................................... 21 1 1 2.00 2 2 0 0 0 0 0
..............................................................................................GTGTTCGTTTGGCTTAAGTT................................................... 20 1 1 2.00 2 0 2 0 0 0 0
.............................................................................................TTTGTTCGTTGGGCTTAAGTTA.................................................. 22 1 1 2.00 2 1 1 0 0 0 0
.............................................................................................TTTGATCGTTTGGCTTAAGTTA.................................................. 22 1 1 2.00 2 1 0 0 0 0 1
.............................................................................................TTTGTTCGTTTGGGTTAAGTTT.................................................. 22 2 1 2.00 2 2 0 0 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTAGGTTT.................................................. 22 2 1 2.00 2 2 0 0 0 0 0
.............................................................................................TTTGTTCGTTTTGCTTAAGTTA.................................................. 22 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTTA...................................................... 18 1 2 1.50 3 2 1 0 0 0 0
..............................................................................................TCTTTCGTTTGGCTTAAGTTA.................................................. 21 2 2 1.50 3 0 0 3 0 0 0
...............................................................................................TTTTCGTTTGGCTTAAGTTAA................................................. 21 2 2 1.50 3 0 0 3 0 0 0
.............................................................................................TTTTTTCGTTTGGCTTAAG..................................................... 19 1 2 1.50 3 1 0 2 0 0 0
.............................................................................................TTCTTTCGTTTGGCTTAAGTT................................................... 21 2 2 1.50 3 3 0 0 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTAGTT.................................................... 20 2 2 1.50 3 3 0 0 0 0 0
.............................................................................................TTTGCTCGTTTGGCTTAAGTTT.................................................. 22 2 2 1.50 3 3 0 0 0 0 0
............................................................................................GTTTGTTCGTTTGGCTTAAGTTT.................................................. 23 1 1 1.00 1 0 1 0 0 0 0
............................................................................................GTTTGTTCGTTTGGCTTAAG..................................................... 20 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................TTTTTTCGTTTGGCTTAAGTTT.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................CTTGTTAGTTTGGCTTAAGTT................................................... 21 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................TTGGTTCGTTTGGCTTAAGT.................................................... 20 1 1 1.00 1 0 0 0 0 1 0
..............................................................................................TTGTTCGTTGGGCTTAAGTT................................................... 20 1 1 1.00 1 0 1 0 0 0 0
.................................................TACTTGGGCCAGGGGAATGCAA.............................................................................................. 22 0 1 1.00 1 0 0 0 1 0 0
.............................................................................................GTTGTTCGTTTGGCTTAAGT.................................................... 20 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TATGTTCGTTTGGCTTAAGT.................................................... 20 1 1 1.00 1 0 1 0 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTAAGTTGTA................................................ 24 2 1 1.00 1 0 1 0 0 0 0
.............................................................................................TTTGTTCGCTTTGCTTAAGTT................................................... 21 2 1 1.00 1 0 0 0 0 1 0
.............................................................................................TTTGTTCGCTTGGGTTAAGTT................................................... 21 2 1 1.00 1 1 0 0 0 0 0
..................................................ACTTGGGCCAGAGGAATGCAAACT........................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................TTTTTCGTTTGGCTTAAGTTT.................................................. 21 2 2 1.00 2 0 2 0 0 0 0
.................................................TACTTGGGCCAGGGGAATGTT............................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................TTTGTACGTTTGGCTTAAGTT................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................ACTTGGGCCAAGGGAATGCAA.............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TTTGTTCGTTTGGCGTAAGTTA.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................TTGTTCGTTTGGTTTAAGTTATT................................................ 23 1 1 1.00 1 0 0 1 0 0 0
.............................................................................................GTTTTTCGTTTGGCTTAAGTTA.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTAAGTTACA................................................ 24 2 1 1.00 1 0 0 1 0 0 0
.................................................................................................TTCGTTTGGCTTAAGTTAAA................................................ 20 2 1 1.00 1 0 0 1 0 0 0
............................................................................................TTTTGTTCGTTTGGCTTAAGTTT.................................................. 23 2 1 1.00 1 0 1 0 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTAAGATA.................................................. 22 1 1 1.00 1 0 1 0 0 0 0
.............................................................................................TATGTTCGTTTGCCTTAAGTTA.................................................. 22 2 1 1.00 1 0 0 0 0 1 0
..............................................................................................TTGTTCGTTTGGCTTAATTT................................................... 20 1 1 1.00 1 0 1 0 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTAAGTTTC................................................. 23 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................TTTGTTCGGTTGGCTTAAG..................................................... 19 1 1 1.00 1 0 1 0 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTACGTTT.................................................. 22 2 2 1.00 2 1 0 0 0 0 1
.............................................................................................TTTGTTCGTTGGGCTTAAGT.................................................... 20 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TTTGTTGGTTTGGCTTAAGTTT.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................TTTGTTCGTTTGTCTTAAG..................................................... 19 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................ATGTTCGTTTGGCTTAAGCT................................................... 20 2 1 1.00 1 0 0 0 1 0 0
.............................................................................................TTTGTTCGTTTGGGTTAAGT.................................................... 20 1 1 1.00 1 0 1 0 0 0 0
.............................................................................................TTAGTTCGTTTGGCTTAAGTTA.................................................. 22 1 1 1.00 1 0 0 1 0 0 0
.............................................................................................TTTGTTCGTATGGCTTAAGTT................................................... 21 1 1 1.00 1 0 1 0 0 0 0
.............................................................................................TTTGTTCGTTTGTCTTAAGT.................................................... 20 1 1 1.00 1 1 0 0 0 0 0
.....................................................TGGGCCAGGGGAATGCAAACT........................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0
.............................................................................................TTTGTTCGGTTGGATTAAGTTA.................................................. 22 2 1 1.00 1 0 0 0 0 1 0
.............................................................................................TTTGTGCGTGTGGCTTAGGTTA.................................................. 22 3 1 1.00 1 0 0 0 0 0 1
...............................................................................................TGTTCGTTGGGCTTAAGTTA.................................................. 20 1 1 1.00 1 0 1 0 0 0 0
.............................................................................................TTTTTTCGGTTGGCTTAAGTT................................................... 21 2 2 1.00 2 0 2 0 0 0 0
.............................................................................................TTTGTTAGTTTGGCTTGAGTTA.................................................. 22 2 1 1.00 1 0 0 0 0 1 0
................................................................................................GTTGGTTTGGCTTAAGTTA.................................................. 19 1 1 1.00 1 0 0 0 1 0 0
.............................................................................................TTTGTTCGATTGTCTTAAGTTA.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................TTTGCTAGTTTGGCTTAAGTT................................................... 21 2 1 1.00 1 1 0 0 0 0 0
..............................................................................................TTGTTCGTTTGGCTTAAGA.................................................... 19 1 1 1.00 1 0 1 0 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTAAGTCCT................................................. 23 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................TTTTCGTTTGGCGTAAGTTA.................................................. 20 2 1 1.00 1 0 0 1 0 0 0
................................................................................GCAATGCAAAAAGTTTGTTCGTTTGT........................................................... 26 1 1 1.00 1 0 0 0 1 0 0
.............................................................................................TTTGTTCGTTTGGCTTAAGTCT.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................AACCTTTGTTCGTTTGGCTTAAGTT................................................... 25 2 1 1.00 1 0 1 0 0 0 0
.............................................................................................TTTGTTCGTATGGCTTAAGTTA.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TTTGTTCGATTGGCTTAAGTTAC................................................. 23 2 1 1.00 1 0 1 0 0 0 0
.............................................................................................TTTGTTCGTTTGTCTTAACTT................................................... 21 2 1 1.00 1 0 0 0 1 0 0
.............................................................................................TTTGTCCGTTTTGCTTAAGTT................................................... 21 2 1 1.00 1 0 0 0 0 1 0
.............................................................................................TTTCTTCTTTTGGCTTAAGTTA.................................................. 22 2 1 1.00 1 0 0 0 0 1 0
.............................................................................................TTTGTTCGTTTGGCTTAG...................................................... 18 1 1 1.00 1 0 0 1 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTAGGTTTT................................................. 23 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................TTTGTTCGTTTAGCTTAAGTTT.................................................. 22 2 2 1.00 2 2 0 0 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTGAGT.................................................... 20 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TTTGTTCGTTTGTCTTAAGTTAA................................................. 23 2 2 1.00 2 1 0 0 0 1 0
.............................................................................................TTTGTGGGGTTGGCTTAAGTTA.................................................. 22 3 1 1.00 1 0 0 0 0 1 0
....................................................TTGGGCCAGGGGAATGCAAACTT.......................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTAAGTTAGA................................................ 24 2 1 1.00 1 0 0 1 0 0 0
............................................................................................CTTTGTTCGTTTGGCTTAAGTTAA................................................. 24 2 1 1.00 1 0 0 0 1 0 0
.............................................................................................TTTGTTCGTTTGGCTTTAATTA.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTAAGTTAGT................................................ 24 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................TTTTTCGTTTGGCTTAAGTTAA................................................. 22 2 1 1.00 1 0 0 1 0 0 0
.........................................................................................AAAGTTTGTTCGTTTGGC.......................................................... 18 0 1 1.00 1 0 0 1 0 0 0
.............................................................................................TTTCTTCGTTTGGCTTAAGTTG.................................................. 22 2 1 1.00 1 0 0 1 0 0 0
..............................................................................................TTGTTCGTATGGCTTAAGTTT.................................................. 21 2 1 1.00 1 0 1 0 0 0 0
..........................................................................GTGATCGCAATGCAAAAAG........................................................................ 19 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................TTTGTTCGTCTGGCTTAAGTTT.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
.......................................................................ACTGTGATCGCAATGCAAAAAG........................................................................ 22 0 1 1.00 1 0 0 1 0 0 0
.............................................................................................TTTGTTCGTTTGGCTAAAGTT................................................... 21 1 1 1.00 1 0 0 1 0 0 0
.............................................................................................TTTGTTCGTTTGGCTTAAGTTGG................................................. 23 2 1 1.00 1 0 1 0 0 0 0
.............................................................................................TTTGTTCGATTGGCTTAAGTTG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0

Anti-sense strand reads

CCGGACACGGACACGAACTCTCGGGTGGGTGGGCTTATTCCGTCGCTTAATGAACCCGGTCCCCTTACGTTTGACACTAGCGTTACGTTTTTCAAACAAGCAAACCGAATTCAATAAAAGTACGGAGTTCATTTGCGGTGCACCCAAACTCTCAGAACCTGAGAG

************************************...(((((..((((.((((((((((((.((..(((((((......((...))....))))))))).)))))))))))).))))...)))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total V057

head
..............GATCTCTCGGGTGGGTTGG.................................................................................................................................... 19 2 4 0.25 1 1
......................................................................................................................AGTACCGAGTTCATTCGAG............................ 19 3 20 0.05 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droPer2 scaffold_1:7140242-7140406 + dpe_13 confident GGCCTGTGCCT-----GTGCTTG-----------AGAGCCCACCCACCCGAAT------AAGGCAGCGAATTACTTGGGCCAGGGGAATGCAAACTGTG---ATCGC-----------AA-TGCAAAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCTCAAG----------TAAACGCCACGTGGGTTTGAG--AGTCTTG--------GACTCTC-----------------
dp5 4_group3:5649084-5649248 + dps-mir-375 Known_mirbase GGCCTGTGCCT-----GTGTCTG-----------AGAGCCCACCCACCCGAAT------AGGGCAGCGAATTACTTGGGCCAGGGGAATTCAAACTGTG---ATCGC-----------AA-TGCAAAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCTCAAG----------TAAACGCCACGTGGGTTTGAG--AGTCTTG--------GACTCTC-----------------
droWil2 scf2_1100000004585:2278803-2278934 - dwi_19 confident TTTCCATTTCA-----TTTTTTG------------------------------------GGGGCAGCGAATTACTTGGGCCAAGGGAATTCAAACTGTG---AATT-----ATTTCAAAA-TGCAAAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCGTACA---------ATTGCGACACGTGG------------------------------------------------
droVir3 scaffold_12963:19405397-19405506 + dvi-mir-375 Known_mirbase AGTT-------------------------------------------------------CGGGCAGCAAATTACTTGGGCCAAGGGAATGCAAACTGTC---AACGC-----------AT-TGCAATAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCCAAC-----------ATAACGCCACGTGG------------------------------------------------
droMoj3 scaffold_6500:23808222-23808360 - dmo_4 confident GGCATTTTCCTGTTCAGTGTATG-------CT----------------------CCTGCAGGGCTGCGAATTACTTGGGCCAAGGGAATGCAAACTGTTCGAAAAGC-----------AT-TGCAAAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCCGAT-----------AAAACGCCACGTGG------------------------------------------------
droGri2 scaffold_15252:7270310-7270449 + dgr_76 confident GTCT-GTG--T-----GTATTTGGTGG--------------------------GG----CGGGCAGCGAATTACTTGGGCCAAGTGGATGTAAACTGTG---AAAGCGCATTTTGCATAT-AACAAAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCCGATA-----------TAACGCCACGTGGGT----------------------------------------------
droAna3 scaffold_12916:2746990-2747120 + dan_11 confident GGAA-------------------------------AAGACACCCCACGGAAACGA----GGGGCAGCGAATTACTTGGGCCAAGGGAATTCAAACTGTG---ATCGC-----------AA-TGCTAGAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCGTTG----------CAAACGCCACGTGG------------------------------------------------
droBip1 scf7180000396737:2017553-2017696 - AGTTGG------------------TGGAGCTCCCAGAGACACCCCACGGAAACGA----GGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---ATCGC-----------AA-TGCTAGAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCGTTG----------CAAACGCCACGTGG------------------------------------------------
droKik1 scf7180000301725:150201-150317 - ------------------------------------------------------------GGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---ATCGC-----------AATTACCAAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCCGAAAAACACACAGACAAACGCCACGTGG------------------------------------------------
droFic1 scf7180000453904:1127916-1128073 + TTCG--------------------TGGAACCAC--------------CAGATCCC----CGGGCAGCGAATTACTTGGGCCAAGGGGATGCAAACTGTG---ATCGC-----------A---GCTAGAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCGATT----------TAAGCGCCACGTGGT--GG-GAT-----CG--------GATTGTCCACACATAGTATATAGG
droEle1 scf7180000490458:433862-434002 - AAA--------------------------------------------------------GGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTA---ATTGC-----------AA-TGCTACAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCTGATT----------TAAACGCCACGTGGT--GGAGATCGGGAG-TAGTTCTGGTTC-----TATATA---------
droRho1 scf7180000769144:95320-95474 - GAAC--------------------------TAT--------------CAGTATCC----CGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTT---TTCGC-----------AC-TGCTAGAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCTGATT----------TAAACGCCACGTGGT--GGAGATCGGTTCG--------GTTC-----TATATAATGCGTATC
droBia1 scf7180000302261:2955889-2956000 - GGCG---------------------------------------------GAGTCC----CGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---ATCC-----------------CTAGTAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCGATT----------AAAGCGCCACGTGG------------------------------------------------
droTak1 scf7180000415856:522990-523110 + GTGG--------------------TTT-------AA------------AGTATCCCTTTGGGGCAGCGAATTACTTGGGCCAAGGGGATGCAAACTGTG---ATCG-----------------CTAGAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCGATT----------TAAAGGCCACGTG-------------------------------------------------
droEug1 scf7180000409554:1584254-1584402 + TACTCCTGCGT--------------GGA-CTAT--------------CACTATCC----CGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---ATCG-----------------TTAGAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCCGATT----------AAATCGCCACGTGGT--GGAGATCAAATCG--------GATCTAT-----------------
dm3 chr2L:857534-857646 + dme-mir-375 Known_mirbase AACCCC--------------------------------------------------TTCCGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---ATC--------------A-TCCCGAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCGACT----------AAAGCGCCACGTGG------------------------------------------------
droSim2 2l:820309-820430 + dsi-mir-375 Known_mirbase AGC---------------------------CAT--------------CCGAATCCCTACCGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---ATC--------------A-TCCCGAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCGACT----------AAAGCGCCACGTGG------------------------------------------------
droSec2 scaffold_14:828158-828279 + dse_12 confident AGC---------------------------CAT--------------CCGAATCCCTCCCGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---ATC--------------A-TCCCGAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCGACT----------AAAGCGCCACGTGG------------------------------------------------
droYak3 2L:841552-841669 + dya_17 confident GGAG-------------------------CCAT--------------CCGAGTCC----CGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---ATGC-----------------CTAGTAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCGACT----------AAAGCGCCACGTGG------------------------------------------------
droEre2 scaffold_4929:914688-914808 + der_8 confident GCCT--------------------TGGAGCCAC--------------CACCATCC----CGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---ATGC-----------------CTAGTAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCGACT----------AAAGCGCCACGT--------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
GGCCTGTGCCT-----GTGCTTG-----------AGAGCCCACCCACCCGAAT------AAGGCAGCGAATTACTTGGGCCAGGGGAATGCAAACTGTG---ATCGC-----------AA-TGCAAAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCTCAAG----------TAAACGCCACGTGGGTTTGAG--AGTCTTG--------GACTCTC-----------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTT........................................................................................21117598.0017598185543431009710811095
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTA.......................................................................................22111938.00119381803335422864666423
..................................................................................................................................TTTGTTCGTTTGGCTTAAGT.........................................................................................2012033.002033303430218221249
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTT.......................................................................................2211776.001776444847351233
..................................................................................................................................TTTGTTCGTTTGGCTTAAG..........................................................................................191801.00801244118578419
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAA......................................................................................231788.00788197110246469
...................................................................................................................................TTGTTCGTTTGGCTTAAGTT........................................................................................201401.00401236000039
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTA.......................................................................................211336.00336929001036
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAAA.....................................................................................241228.00228147410076
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAT......................................................................................231198.001981559100123
..................................................................................................................................TTTGTTCGTTTGGCTTAA...........................................................................................18178.00787422000
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTT.......................................................................................21151.00510480003
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTC.......................................................................................22138.0038141110111
...................................................................................................................................TTGTTCGTTTGGCTTAAGT.........................................................................................19135.00350330002
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTA........................................................................................21128.00280900019
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAC......................................................................................23127.002712400011
....................................................................................................................................TGTTCGTTTGGCTTAAGTTA.......................................................................................20126.00260240002
..................................................................................................................................TTTGTTCGTTTGGCTTAAGA.........................................................................................20125.00251330009
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTG.......................................................................................22124.002401400010
..................................................................................................................................TTTGTTCGTTTGGCTTAAGG.........................................................................................20122.00222110000
....................................................................................................................................TGTTCGTTTGGCTTAAGTT........................................................................................19120.00200150005
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTC........................................................................................21120.00201500005
........................................................................ACTTGGGCCAGGGGAATGCAAACT...............................................................................................................................................24117.0017356012
.....................................................................................................................................GTTCGTTTGGCTTAAGTTA.......................................................................................19116.0016061009
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTAA......................................................................................22116.00161120003
.....................................................................................................................................GTTCGTTTGGCTTAAGTT........................................................................................18115.0015370005
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAG......................................................................................23111.0011321005
...................................................................................................................................TTGTTCGTTTGGCTTAAG..........................................................................................18110.00100100000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGC.........................................................................................2018.008700001
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAAAA....................................................................................2518.008700001
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTTA......................................................................................2316.006030003
........................................................................ACTTGGGCCAGGGGAATGC....................................................................................................................................................1915.005013001
......................................................................................................................................TTCGTTTGGCTTAAGTTA.......................................................................................1814.004211000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTTAA.....................................................................................2414.004210001
.................................................................................................................................GTTTGTTCGTTTGGCTTAAGTTA.......................................................................................2314.004040000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGAA........................................................................................2123.507301003
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTCA......................................................................................2313.003020001
..........................................................................TTGGGCCAGGGGAATGCAAACT...............................................................................................................................................2213.003110001
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTAT......................................................................................2213.003020001
........................................................................ACTTGGGCCAGGGGAATGCAAA.................................................................................................................................................2213.003011001
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTC.......................................................................................2113.003030000
.....................................................................................................................................GTTCGTTTGGCTTAAGTTT.......................................................................................1913.003010002
.......................................................................TACTTGGGCCAGGGGAATGCA...................................................................................................................................................2113.003000003
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAAG.....................................................................................2413.003010002
..................................................................................................................................TTTGTTCGTTTGGCTTAAC..........................................................................................1913.003210000
....................................................................................................................................TGTTCGTTTGGCTTAAGT.........................................................................................1812.002110000
........................................................................ACTTGGGCCAGGGGAATGCAA..................................................................................................................................................2112.002010001
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTAAA.....................................................................................2312.002200000
....................................................................................................................................TGTTCGTTTGGCTTAAGTTT.......................................................................................2012.002010001
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTGA......................................................................................2312.002010001
.................................................................................................................................GTTTGTTCGTTTGGCTTAAGT.........................................................................................2112.002200000
............................................................................................................................AAAAAGTTTGTTCGTTTGGCTTAAGT.........................................................................................2612.002200000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTG........................................................................................2112.002100001
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTATT.....................................................................................2412.002100001
.................................................................................................................................GTTTGTTCGTTTGGCTTAAGTT........................................................................................2212.002020000
.................................................................................................................................GTTTGTTCGTTTGGCTTAAGTTT.......................................................................................2311.001010000
.................................................................................................................................GTTTGTTCGTTTGGCTTAAG..........................................................................................2011.001000001
.......................................................................TACTTGGGCCAGGGGAATGCAA..................................................................................................................................................2211.001001000
.......................................................................TACTTGGGCCAGGGGAATGTT...................................................................................................................................................2111.001000001
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTACA.....................................................................................2411.001100000
......................................................................................................................................TTCGTTTGGCTTAAGTTAAA.....................................................................................2011.001100000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTTC......................................................................................2311.001000001
...........................................................................TGGGCCAGGGGAATGCAAACT...............................................................................................................................................2111.001100000
...................................................................................................................................TTGTTCGTTTGGCTTAAGA.........................................................................................1911.001010000
.........................................................................................................GC-----------AA-TGCAAAAAGTTTGTTCGTTTGT................................................................................................2611.001001000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTCT.......................................................................................2211.001000001
..................................................................................................................................TTTGTTCGTTTGGCTTAG...........................................................................................1811.001100000
..........................................................................TTGGGCCAGGGGAATGCAAACTT..............................................................................................................................................2311.001010000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAGA.....................................................................................2411.001100000
..............................................................................................................................AAAGTTTGTTCGTTTGGC...............................................................................................1811.001100000
................................................................................................GTG---ATCGC-----------AA-TGCAAAAAG.............................................................................................................1911.001000001
.............................................................................................ACTGTG---ATCGC-----------AA-TGCAAAAAG.............................................................................................................2211.001100000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTGG......................................................................................2311.001010000
dp5
GGCCTGTGCCT-----GTGTCTG-----------AGAGCCCACCCACCCGAAT------AGGGCAGCGAATTACTTGGGCCAGGGGAATTCAAACTGTG---ATCGC-----------AA-TGCAAAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCTCAAG----------TAAACGCCACGTGGGTTTGAG--AGTCTTG--------GACTCTC-----------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTT........................................................................................21157169.00571691115297741509410243544648340160331018
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTA.......................................................................................22153373.00533732791601528401887804623652132271481877
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTT.......................................................................................2217422.00742267380516544374389912254107
..................................................................................................................................TTTGTTCGTTTGGCTTAAGT.........................................................................................2015909.0059092473395963820689531102764
...................................................................................................................................TTGTTCGTTTGGCTTAAGTT........................................................................................2012701.002701425811203360677
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAA......................................................................................2312674.00267448803262222328414139062
..................................................................................................................................TTTGTTCGTTTGGCTTAAG..........................................................................................1912096.002096137943881230147078229
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTA.......................................................................................2111669.0016690145271362201699
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAT......................................................................................2311091.0010911521620128116368624
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTT.......................................................................................211339.00339032701005051
...................................................................................................................................TTGTTCGTTTGGCTTAAGT.........................................................................................191308.00308029610008021
........................................................................ACTTGGGCCAGGGGAATTCAAACT...............................................................................................................................................241227.002270411072300003512
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTC.......................................................................................221162.0016256834305230240
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTC........................................................................................211158.001583712024002011
....................................................................................................................................TGTTCGTTTGGCTTAAGTT........................................................................................191142.00142113200001071
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAAA.....................................................................................241136.0013623334012210475
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTA........................................................................................211100.001002610010190161
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTAA......................................................................................22192.0092076000030112
....................................................................................................................................TGTTCGTTTGGCTTAAGTTA.......................................................................................20189.008907700102090
..................................................................................................................................TTTGTTCGTTTGGCTTAAGA.........................................................................................20186.008610354010100260
...................................................................................................................................TTGTTCGTTTGGCTTAAG..........................................................................................18174.007407300000010
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAC......................................................................................23168.0068418301140343
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTATT.....................................................................................24165.006525100250500
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTG.......................................................................................22151.0051027400250130
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTTA......................................................................................23135.0035018000030140
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTAT......................................................................................22130.003011900000091
..................................................................................................................................TTTGTTCGTTTGGCTTAA...........................................................................................18130.003017000010201
........................................................................ACTTGGGCCAGGGGAATTCAAAC................................................................................................................................................23128.002804122200017
..................................................................................................................................TTTGTTCGTTTGGCTTA............................................................................................17126.002600000000215
.....................................................................................................................................GTTCGTTTGGCTTAAGTT........................................................................................18126.002602200002011
....................................................................................................................................TGTTCGTTTGGCTTAAGTTT.......................................................................................20123.002302200001000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGC.........................................................................................20122.002211143001020
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAG......................................................................................23122.00220900006070
....................................................................................................................................TGTTCGTTTGGCTTAAGT.........................................................................................18121.002102100000000
.....................................................................................................................................GTTCGTTTGGCTTAAGTTA.......................................................................................19120.002001411101011
........................................................................ACTTGGGCCAGGGGAATTCAAACC...............................................................................................................................................24120.002000200000000
................................................................................................GTG---ATCGC-----------AA-TGCAAAAAG.............................................................................................................19117.001701300200020
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTATC.....................................................................................24112.001201100000100
..................................................................................................................................TTTGTTCGTTTGGCTTAAA..........................................................................................19112.00123300010050
.................................................................................................................................GTTTGTTCGTTTGGCTTAAGTTA.......................................................................................23112.00120900100020
..................................................................................................................................TTTGTTCGTTTGGCTT.............................................................................................16111.00110000000092
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAAAA....................................................................................25111.00110300102050
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTC.......................................................................................21110.001001000000000
.................................................................................................................................GTTTGTTCGTTTGGCTTAAGTT........................................................................................22110.001001000000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGG.........................................................................................2019.0096100000020
........................................................................ACTTGGGCCAGGGGAATTCA...................................................................................................................................................2019.0090300004020
......................................................................................................................................TTCGTTTGGCTTAAGTTA.......................................................................................1819.0094400000010
........................................................................ACTTGGGCCAGGGGAATTCAA..................................................................................................................................................2119.0090300004011
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTATA.....................................................................................2418.0080000002060
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTATTT....................................................................................2518.0080000001070
........................................................................ACTTGGGCCAGGGGAATTC....................................................................................................................................................1917.0070700000000
....................................................................................................................................TGTTCGTTTGGCTTAAGTTAA......................................................................................2117.0070500000020
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTG........................................................................................2117.0071131001000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTACA.....................................................................................2417.0070000001060
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTTC......................................................................................2317.0070200001040
..................................................................................................................................TTTGTTCGTTTGGCT..............................................................................................1527.001400000000113
........................................................................ACTTGGGCCAGGGGAATTCAAA.................................................................................................................................................2217.0070200003011
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTATTTGG..................................................................................2716.0060000000060
.........................................................................CTTGGGCCAGGGGAATTCAAACT...............................................................................................................................................2316.0060600000000
...................................................................................................................................TTGTTCGTTTGGCTTAAGTA........................................................................................2016.0060400000020
...................................................................................................................................TTGTTCGTTTGGCTTAAGA.........................................................................................1915.0050500000000
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTAG......................................................................................2215.0050400001000
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTAAA.....................................................................................2315.0050300000002
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTCA......................................................................................2315.0050200000030
..................................................................................................................................TTTGTTCGTTTGGCTTAAGAA........................................................................................2114.0041200001000
................................................................................................GTG---ATCGC-----------AA-TGCAAAAAGT............................................................................................................2014.0040310000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTTAA.....................................................................................2424.0080200013020
...................................................................................................................................TTGTTCGTTTGGCTTAAGTC........................................................................................2014.0040301000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTATTTCAG.................................................................................2813.0030000000030
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTATTT....................................................................................2413.0030000000030
.....................................................................................................................................GTTCGTTTGGCTTAAGTTT.......................................................................................1913.0030300000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTATAC....................................................................................2513.0030000000030
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTCC......................................................................................2313.0030100002000
.......................................................................TACTTGGGCCAGGGGAATTCA...................................................................................................................................................2113.0030000003000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTATCAG...................................................................................2613.0030000000030
....................................................................................................................................TGTTCGTTTGGCTTAAGTTAT......................................................................................2113.0030100000020
.................................................................................................................................GTTTGTTCGTTTGGCTTAAGTTT.......................................................................................2313.0030300000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTTG......................................................................................2312.0020100000010
droWil2
TTTCCATTTCA-----TTTTTTG------------------------------------GGGGCAGCGAATTACTTGGGCCAAGGGAATTCAAACTGTG---AATT-----ATTTCAAAA-TGCAAAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCGTACA---------ATTGCGACACGTGG------------------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTT........................................................................................21134426.003442646061751789893054260
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTA.......................................................................................22132444.003244416501507059849576164
..................................................................................................................................TTTGTTCGTTTGGCTTAAGT.........................................................................................2018026.00802615012949303948849
..................................................................................................................................TTTGTTCGTTTGGCTTAAG..........................................................................................1912625.002625681113443035525
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTT.......................................................................................2212079.0020798712905941008
........................................................................ACTTGGGCCAAGGGAATTCAAACT...............................................................................................................................................2411860.001860277621597122
...................................................................................................................................TTGTTCGTTTGGCTTAAGTT........................................................................................2011493.0014931114384031
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTA.......................................................................................2111363.0013635129044222
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAA......................................................................................232856.50171322985627533320
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAT......................................................................................231314.003142917287242
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTC.......................................................................................221254.002541247838104
...................................................................................................................................TTGTTCGTTTGGCTTAAGT.........................................................................................191250.002500241711
.......................................................................TACTTGGGCCAAGGGAATTCAAACT...............................................................................................................................................251120.0012001358913
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTT.......................................................................................211116.001160113300
...................................................................................................................................TTGTTCGTTTGGCTTAAG..........................................................................................181109.001094105000
........................................................................ACTTGGGCCAAGGGAATTCAA..................................................................................................................................................211100.0010007413913
....................................................................................................................................TGTTCGTTTGGCTTAAGTTA.......................................................................................20195.0095186710
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAAA.....................................................................................24293.001861012228287
..................................................................................................................................TTTGTTCGTTTGGCTTAAGG.........................................................................................20193.0093872400
....................................................................................................................................TGTTCGTTTGGCTTAAGTT........................................................................................19190.0090083520
........................................................................ACTTGGGCCAAGGGAATTCAAA.................................................................................................................................................22187.00870324564
..................................................................................................................................TTTGTTCGTTTGGCTTAAGA.........................................................................................20187.0087322717110
........................................................................ACTTGGGCCAAGGGAATTCA...................................................................................................................................................20182.008204442113
.......................................................................TACTTGGGCCAAGGGAATTCA...................................................................................................................................................21181.00810105939
........................................................................ACTTGGGCCAAGGGAATTCAAAC................................................................................................................................................23161.0061092491
..........................................................................TTGGGCCAAGGGAATTCAAACTGT.............................................................................................................................................24156.00560511391
..................................................................................................................................TTTGTTCGTTTGGCTTAAGC.........................................................................................20152.0052413710
..................................................................................................................................TTTGTTCGTTTGGCTTAA...........................................................................................18146.00461264240
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAG......................................................................................23141.00413171470
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTAA......................................................................................22238.0076074110
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTG.......................................................................................22138.00381215101
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAC......................................................................................23138.0038228440
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTA........................................................................................21135.0035425420
.......................................................................TACTTGGGCCAAGGGAATTCAA..................................................................................................................................................22131.0031051853
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTC........................................................................................21130.0030205500
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTCC......................................................................................23129.0029234200
.....................................................................................................................................GTTCGTTTGGCTTAAGTTA.......................................................................................19125.0025022120
..........................................................................TTGGGCCAAGGGAATTCAAACTG..............................................................................................................................................23123.0023137102
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTAT......................................................................................22122.0022021100
..........................................................................TTGGGCCAAGGGAATTCAAACT...............................................................................................................................................22118.001816173
.......................................................................TACTTGGGCCAAGGGAATTCAAA.................................................................................................................................................23117.001701574
....................................................................................................................................TGTTCGTTTGGCTTAAGT.........................................................................................18117.0017016100
..................................................................................................................................TTTGTTCGTTTGGCTTAAA..........................................................................................19216.0032812273
.....................................................................................................................................GTTCGTTTGGCTTAAGTT........................................................................................18115.0015013020
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTATT.....................................................................................24113.001357010
........................................................................ACTTGGGCCAAGGGAATTCAAACTT..............................................................................................................................................25113.0013011101
........................................................................ACTTGGGCCAAGGGAATTC....................................................................................................................................................19113.0013110101
.......................................................................TACTTGGGCCAAGGGAATTCAAAC................................................................................................................................................24112.001206051
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTG........................................................................................21111.001143301
.................................................................................................................................GTTTGTTCGTTTGGCTTAAGTT........................................................................................2219.00909000
.........................................................................CTTGGGCCAAGGGAATTCAAACT...............................................................................................................................................2318.00807100
.......................................................................TACTTGGGCCAAGGGAATTC....................................................................................................................................................2018.00802600
.................................................................................................................................GTTTGTTCGTTTGGCTTAAGTTA.......................................................................................2317.00707000
......................................................................................................................................TTCGTTTGGCTTAAGTTA.......................................................................................1827.001445410
...................................................................................................................................TTGTTCGTTTGGCTTAAGTA........................................................................................2017.00707000
........................................................................ACTTGGGCCAAGGGAATTCAAACTGTG---A........................................................................................................................................2816.00612300
........................................................................ACTTGGGCCAAGGGAATTCAAACC...............................................................................................................................................2415.00500131
..................................................................................................................................TTTGTTCGTTTGGCTTAAC..........................................................................................1915.00541000
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTC.......................................................................................2115.00505000
........................................................................ACTTGGGCCAAGGGAATTCAAACTGTG---.........................................................................................................................................2715.00501400
........................................................................ACTTGGGCCAAGGGAATTCAAACTGT.............................................................................................................................................2614.00400310
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTTC......................................................................................2314.00412100
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTACA.....................................................................................2414.00440000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTCCC.....................................................................................2423.00660000
...........................................................................TGGGCCAAGGGAATTCAAACTGTG---A........................................................................................................................................2513.00300300
....................................................................................................................................TGTTCGTTTGGCTTAAGTTAA......................................................................................2123.00606000
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTAG......................................................................................2213.00303000
................................................................................................GTG---AATT-----ATTTCAAAA-TGCAAAAAG.............................................................................................................2513.00300030
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTATA.....................................................................................2412.00202000
........................................................................ACTTGGGCCAAGGGAATTCAAACA...............................................................................................................................................2412.00200110
................................................................................................................................AGTTTGTTCGTTTGGCTTAAGTTA.......................................................................................2412.00201010
....................................................................................................................................TGTTCGTTTGGCTTAAGTTAT......................................................................................2112.00202000
..................................................................................................................................TTTGTTCGTTTGGCTTAAT..........................................................................................1922.00404000
.......................................................................TACTTGGGCCAAGGGAATTCAAACTT..............................................................................................................................................2612.00201010
....................................................................................................................................TGTTCGTTTGGCTTAAGTTT.......................................................................................2012.00202000
..........................................................................TTGGGCCAAGGGAATTCAA..................................................................................................................................................1912.00201100
.................................................................................................................................GTTTGTTCGTTTGGCTTAAGT.........................................................................................2112.00202000
........................................................................ACTTGGGCCAAGGGAATTCAAAA................................................................................................................................................2312.00200200
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTTA......................................................................................2321.50303000
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTAAA.....................................................................................2321.50302001
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTTCC.....................................................................................2421.50330000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAAC.....................................................................................2431.33421010
..........................................................................................................................GCAAAAAGTTTGTTCGTTTGGCTTA............................................................................................2511.00100100
droVir3
AGTT-------------------------------------------------------CGGGCAGCAAATTACTTGGGCCAAGGGAATGCAAACTGTC---AACGC-----------AT-TGCAATAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCCAAC-----------ATAACGCCACGTGG------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTT........................................................................................211172012.00172012511679020846274667192005311874535291200019602161625152214028132334986201611143208678623223608941927269391751400249148310100000003795121328420328115012532611648011604434112645332944381154505550
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTA.......................................................................................221137312.0013731219593271406217013571312620686503000153416404951062799484143543014065629237592108402443612317341952319415008198150003000021914202616202481561042002321756635058754723504239242623192238354244
..................................................................................................................................TTTGTTCGTTTGGCTTAAGT.........................................................................................20128030.002803021272423162382930502113843504000260328872042231213461503243392291862734781439349011816300062358000000000113322604867284555265100151224292616221819218151114
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTC.......................................................................................22115278.0015278926206464443114111113000061136337786813002230433216962128061520008184500000000000000032521169202200011498300101
..................................................................................................................................TTTGTTCGTTTGGCTTAAG..........................................................................................19112205.00122051736230153137111007583168100011514730787051136711724234161326917146271576065620006667000000000010110149162163660500135028252127202115235
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAA......................................................................................2319670.0096703126410244245142220531002110114306536437024126242646472048627204501752000448500000000000000055731328839046152312323507143
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTT.......................................................................................2219175.00917519646308110045661340621000831145777524769431325401011204115022375603540000140000000000001010213171535301166018300001620002421
........................................................................ACTTGGGCCAAGGGAATGCAAACT...............................................................................................................................................2413903.003903160161288134303631023320007724133020298427730012115521080237074002006402000218131730421421148914748424380004219000000142011713346
...................................................................................................................................TTGTTCGTTTGGCTTAAGTT........................................................................................2012212.00221211017805041040120000742431749000001382268801900000420000000000000001011004300000000010000001
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAT......................................................................................2311863.0018636713446210540221100001825710138157280000159317762680581000051000000000000102883251123604100000100001110
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTA.......................................................................................2111770.001770521228402502060000610387123310001351166414901300000390000000000001000000103000000010002200000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTC........................................................................................2111498.001498209864160234413050000010002891110000141502592058000002030000000000000001110015100000031410000010
..................................................................................................................................TTTGTTCGTTTGGCTTAA...........................................................................................1811380.0013803431000270150300001615259186184020122533292105150260000011000000000000000000040000000012000100000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAAA.....................................................................................241873.00873170274021330903300006705241311301000471143590019000004301000000001000000121011800010187413301122
..................................................................................................................................TTTGTTCGTTTGGCTTAAGA.........................................................................................201416.0041613724771019020700001112003220001029580500000130000000000000000010006900010082413301010
........................................................................ACTTGGGCCAAGGGAATGCAA..................................................................................................................................................211380.0038020830180212551000691513154200020154821480190000080000000000000000000315800000000000000010
........................................................................ACTTGGGCCAAGGGAATGCAAAC................................................................................................................................................231329.00329102116017025218000054162015110000015371345050000050000000000300001005104200000100000017733
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTT.......................................................................................211282.00282102650000001000030000000000000051201000000000000000000000000000300000000000000000
...................................................................................................................................TTGTTCGTTTGGCTTAAGT.........................................................................................191267.00267402271010000000010101020000000137803000001000000000000000000100500000000000000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTA........................................................................................211256.0025691461123010700003512148130000192992601500000110000000000000000000003700010000000001000
........................................................................ACTTGGGCCAAGGGAATGCA...................................................................................................................................................201246.0024610210070271490000200002513000016221126070000040000000000000000000404600000000000000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAG......................................................................................231244.00244702120170309000011022260800000829184001200000190000000000001000000103202000000000100000
........................................................................ACTTGGGCCAAGGGAATGCAAA.................................................................................................................................................221227.0022700101012014133000015021322310000142313190110000070000000000000001010104500000000000000001
..................................................................................................................................TTTGTTCGTTTGGCTTAAGG.........................................................................................201219.002191852230030000000000000000100000010001000000000000000000000000000300000000000000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTG.......................................................................................221215.00215303610280201000000201009020000082083201000000200000000000000000010112000000000000000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAC......................................................................................231180.001801611830130200000002011241100000103172501000000110000000000000000000201800000000001000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTATC.....................................................................................241177.0017714111011100000000010000300000008639230200000180000000000000000000001100000000100000000
...................................................................................................................................TTGTTCGTTTGGCTTAAG..........................................................................................181153.00153201350000001000001000010000010131301000001000000000000000000000100000000000000001
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTAA......................................................................................221136.00136418800801000000011000001000000841400000001000000000000000000000400000000000000000
....................................................................................................................................TGTTCGTTTGGCTTAAGTT........................................................................................191133.00133008210702000000000001200000002721203000006000000000000000210000300000000000000000
....................................................................................................................................TGTTCGTTTGGCTTAAGTTA.......................................................................................201125.00125006300300000000310000111000004982300000002000000000000000200000200110000000000000
........................................................................ACTTGGGCCAAGGGAATGC....................................................................................................................................................191108.001080053070250250000100020220000001303060000020000000000000000000501600000000000000000
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTC.......................................................................................211104.0010420611050000000000000010000000182903000009000000000000000000000200000000000000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTCT.......................................................................................22197.009728315001300000000010000400100001603020000010000000000000000100000900000000000000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAA..........................................................................................19286.50173304281120010400000701300240000001359016000009000000000000000000002900000000010100020
.....................................................................................................................................GTTCGTTTGGCTTAAGTT........................................................................................18175.00750015101000010000113010202000100113409000009000000000000000000000100000000000000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTATCC....................................................................................25169.0069170100600000000000000200000003837010000070000000000000000000001300000010000000000
.....................................................................................................................................GTTCGTTTGGCTTAAGTTA.......................................................................................19165.0065001510100000000110201601000005105502000006000000000000000000000102000000000000000
..........................................................................TTGGGCCAAGGGAATGCAAACT...............................................................................................................................................22158.00584041020605000003020000000000101602000000000000000100213200210400000000000001301
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTCC......................................................................................23256.00112690400400000000000000500000000602030000060000000000000000000001200000000000000001
........................................................................ACTTGGGCCAAGGGAATGCAAACC...............................................................................................................................................24156.005610054000100000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGC.........................................................................................20354.671647574420800000000000000102000000225010000050000000000000000000001000000000000000000
.........................................................................CTTGGGCCAAGGGAATGCAAACT...............................................................................................................................................23149.004900147000101000000000020000000211002000000000000010100101010320100000000000003400
........................................................................ACTTGGGCCAAGGGAATGCAAACTT..............................................................................................................................................25148.004800910203070000200000001000000102030000000000000000000001001001500000000000000000
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTAT......................................................................................22141.004100320000000000000000000000000061000000001000000000000000000000100000000000000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTCA......................................................................................23238.0076501010900000000200001200000002154704000009000000000000000000000500000000000000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGAA........................................................................................21137.003715110000102000011100020000000110002000001000000000000000000000600000000010000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTCC.......................................................................................22236.507339051090000000001000050000000010301000004000000000000000000000400000000000000000
......................................................................................................................................TTCGTTTGGCTTAAGTTA.......................................................................................18133.00335150030000000002000010000000022604000000000000000000000100000100000000000000000
........................................................................ACTTGGGCCAAGGGAATG.....................................................................................................................................................18123.002300100006010000000000000000000020001000000000000000000000000000300000000000000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTG........................................................................................21223.00469033010500000004000050000000161201000002000000000000000000001200000000000000000
....................................................................................................................................TGTTCGTTTGGCTTAAGT.........................................................................................18121.002100140010001000000000000000000011001000001000000000000000000000100000000000000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTTC......................................................................................23220.504120610700000000000000000000001104201000004000000000000000000000300000000000000000
.......................................................................TACTTGGGCCAAGGGAATGCAAACT...............................................................................................................................................25120.00200020000401000010010010100000130300000000000000000000000000000000000000000001001
....................................................................................................................................TGTTCGTTTGGCTTAAGTTAA......................................................................................21117.00170080000000000000000000000000011500000001000000000000000000000100000000000000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTATT.....................................................................................24117.00172142000000000000000000000000022200000001000000000000000000000100000000000000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTCCC.....................................................................................24217.003426010020000000000000010000000020000000000000000000000000000000200000000000000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAT..........................................................................................19216.00329010020000000000010121220000000007000001000000000000000000010200000000000000000
..............................................................................GCCAAGGGAATGCAAACT...............................................................................................................................................18116.00160000000808000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................GTC---AACGC-----------AT-TGCAATAAG.............................................................................................................19115.00151021000000000010000000000000122300000002000000000000000000000000000000000000000
....................................................................................................................................TGTTCGTTTGGCTTAAGTTT.......................................................................................20113.001300110000000000000000000000000011000000000000000000000000000000000000000000000000
.......................................................................TACTTGGGCCAAGGGAATGCA...................................................................................................................................................21113.00130000000401000000000000000000020200000001000000000000000000000300000000000000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTACC.....................................................................................24112.00125000010000000000000000000000011002000000000000000000000000000200000000000000000
.......................................................................TACTTGGGCCAAGGGAATGCAA..................................................................................................................................................22112.00120000000004000010000010000000000200000000000000000000000000000400000000000000000
........................................................................ACTTGGGCCAAGGGAATGCAAACTGTC---AACGC-----------AT-TGCAATAAG.............................................................................................................43112.00120000000000000000000000000000000000000000000000000202001105100000000000000000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAAG.....................................................................................24111.00110130000000000000000000000000110100000001000000000000000000000100000000020000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTTCC.....................................................................................24211.002210010030000000000000000000000030000000002000000000000000000000300000000000000000
.................................................................................................................................GTTTGTTCGTTTGGCTTAAGTT........................................................................................22111.001100100000000000000000000000000010000000000000000000000000000000000000000000000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTTA......................................................................................23211.00221090010000000010000020000000220200000000000000000000000000000200000000000000000
........................................................................ACTTGGGCCAAGGGAATGCAT..................................................................................................................................................21111.00110020000300000001000000000000010000000000000000000000000000000400000000000000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTAT.......................................................................................22111.00112040000001000000000000000000010000000000000000000000000000000300000000000000000
........................................................................ACTTGGGCCAAGGGAATGCAAAA................................................................................................................................................23111.00110010000401000000000020000000000100000000000000000000000000000100000000000000100
..................................................................................................................................TTTGTTCGTTTGGCTTAAC..........................................................................................19210.502116201010000000000000000000000010000000000000000000000000000000000000000000000000
.................................................................................................................................GTTTGTTCGTTTGGCTTAAGTTA.......................................................................................23110.001000100000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAAC.....................................................................................24210.00203120010000000000000000000000120301000003000000000000000000000200000000000001000
.........................................................................CTTGGGCCAAGGGAATGCAAAC................................................................................................................................................2218.0080030010000000000000000000000100100000000000000000000000000000200000000000000000
..........................................................................TTGGGCCAAGGGAATGCAAAC................................................................................................................................................2118.0080010000100000001000000000000002000000000000000000000000111000000000000000000000
........................................................................ACTTGGGCCAAGGGAATGCAAACA...............................................................................................................................................2418.0080010010001000000000000000000000100000000000000000000000000000400000000000000000
droMoj3
GGCATTTTCCTGTTCAGTGTATG-------CT----------------------CCTGCAGGGCTGCGAATTACTTGGGCCAAGGGAATGCAAACTGTTCGAAAAGC-----------AT-TGCAAAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCCGAT-----------AAAACGCCACGTGG------------------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTA.......................................................................................22173006.007300639999484681441751014801
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTT........................................................................................21165268.00652684100284134232614617670
..................................................................................................................................TTTGTTCGTTTGGCTTAAGT.........................................................................................2017529.0075293392423513243735
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTT.......................................................................................2216009.006009377629162631943
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTA.......................................................................................2113443.00344333362125151
...................................................................................................................................TTGTTCGTTTGGCTTAAGTT........................................................................................2013378.00337833130001748
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAA......................................................................................2312881.0028811488187201321216
........................................................................ACTTGGGCCAAGGGAATGCAAACT...............................................................................................................................................2412839.00283992328221937478
..................................................................................................................................TTTGTTCGTTTGGCTTAAG..........................................................................................1911578.001578686181417852
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAT......................................................................................231968.00968452331169340
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTC.......................................................................................221664.006645112475531
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTC........................................................................................211623.0062325002275321
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTT.......................................................................................211337.0033733300004
........................................................................ACTTGGGCCAAGGGAATGCAAACC...............................................................................................................................................241296.0029600002960
...................................................................................................................................TTGTTCGTTTGGCTTAAGT.........................................................................................191253.0025324400027
........................................................................ACTTGGGCCAAGGGAATGCAAAC................................................................................................................................................231229.0022919110016534
....................................................................................................................................TGTTCGTTTGGCTTAAGTTA.......................................................................................201158.00158145000121
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAAA.....................................................................................241149.00149303011798
....................................................................................................................................TGTTCGTTTGGCTTAAGTT........................................................................................191147.0014714100132
..........................................................................TTGGGCCAAGGGAATGCAAACTGT.............................................................................................................................................241146.001461230019112
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTAA......................................................................................221127.0012711900008
........................................................................ACTTGGGCCAAGGGAATGCAA..................................................................................................................................................21196.009616201374
..................................................................................................................................TTTGTTCGTTTGGCTTAAGC.........................................................................................20178.007820005026
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTG.......................................................................................22169.006942000819
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTA........................................................................................21169.006944000520
........................................................................ACTTGGGCCAAGGGAATGCAAA.................................................................................................................................................22166.006694101042
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTCT.......................................................................................22160.00601000059
........................................................................ACTTGGGCCAAGGGAATGCA...................................................................................................................................................20158.005814100043
...................................................................................................................................TTGTTCGTTTGGCTTAAG..........................................................................................18156.00565500001
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTAT......................................................................................22153.00535300000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAC......................................................................................23150.0050131011718
..........................................................................TTGGGCCAAGGGAATGCAAACT...............................................................................................................................................22141.00418000825
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTTC......................................................................................23140.00401000138
.....................................................................................................................................GTTCGTTTGGCTTAAGTTA.......................................................................................19140.00403700003
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAG......................................................................................23135.00352600027
..........................................................................TTGGGCCAAGGGAATGCAAACTG..............................................................................................................................................23133.00336200025
................................................................................................GTTCGAAAAGC-----------AT-TGCAAAAAG.............................................................................................................22132.003225011113
........................................................................ACTTGGGCCAAGGGAATGC....................................................................................................................................................19129.00293001322
..........................................................................TTGGGCCAAGGGAATGCAA..................................................................................................................................................19127.00273010023
.....................................................................................................................................GTTCGTTTGGCTTAAGTT........................................................................................18124.00242000013
.................................................................................................................................GTTTGTTCGTTTGGCTTAAGTTA.......................................................................................23121.00211900002
.........................................................................CTTGGGCCAAGGGAATGCAAACT...............................................................................................................................................23120.00201410023
........................................................................ACTTGGGCCAAGGGAATGCAAACTT..............................................................................................................................................25119.00190000316
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTATT.....................................................................................24119.00195000311
..................................................................................................................................TTTGTTCGTTTGGCTTAAGA.........................................................................................20218.503715000121
..................................................................................................................................TTTGTTCGTTTGGCTTAA...........................................................................................18118.0018800019
....................................................................................................................................TGTTCGTTTGGCTTAAGTTT.......................................................................................20116.00161600000
....................................................................................................................................TGTTCGTTTGGCTTAAGT.........................................................................................18114.00141400000
......................................................................................................................................TTCGTTTGGCTTAAGTTA.......................................................................................18112.0012700023
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTATC.....................................................................................24111.00110000011
....................................................................................................................................TGTTCGTTTGGCTTAAGTTAA......................................................................................21110.0010900100
.......................................................................TACTTGGGCCAAGGGAATGCAAACT...............................................................................................................................................2519.009120033
..........................................................................TTGGGCCAAGGGAATGCAAACTGC.............................................................................................................................................2418.008000080
.................................................................................................................................GTTTGTTCGTTTGGCTTAAGTT........................................................................................2218.008800000
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTC.......................................................................................2118.008700001
..........................................................................TTGGGCCAAGGGAATGCAAA.................................................................................................................................................2018.008100007
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTTA......................................................................................2327.5015600027
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTGG......................................................................................2317.007700000
........................................................................ACTTGGGCCAAGGGAATGCAT..................................................................................................................................................2117.007200104
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAAC.....................................................................................2417.007300022
........................................................................ACTTGGGCCAAGGGAATGT....................................................................................................................................................1916.006200004
..........................................................................TTGGGCCAAGGGAATGCAAACTGTT............................................................................................................................................2516.006000006
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTG.......................................................................................2116.006600000
........................................................................ACTTGGGCCAAGGGAATGCAAACA...............................................................................................................................................2415.005100013
..........................................................................TTGGGCCAAGGGAATGCAAAC................................................................................................................................................2115.005200021
.....................................................................................................................................GTTCGTTTGGCTTAAGTTAA......................................................................................2014.004400000
........................................................................ACTTGGGCCAAGGGAATGCAAACTA..............................................................................................................................................2514.004010021
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTTG......................................................................................2314.004400000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTGGC.....................................................................................2414.004400000
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTAAA.....................................................................................2314.004400000
.......................................................................TACTTGGGCCAAGGGAATGCAA..................................................................................................................................................2214.004000004
..................................................................................................................................TTTGTTCGTTTGGCTTAAA..........................................................................................1933.6711700004
...................................................................................................................................TTGTTCGTTTGGCTTAAGTC........................................................................................2013.003000021
........................................................................ACTTGGGCCAAGGGAATGCT...................................................................................................................................................2013.003100002
........................................................................ACTTGGGCCAAGGGAATGTT...................................................................................................................................................2013.003000003
....................................................................................................................................TGTTCGTTTGGCTTAAGTTAT......................................................................................2113.003200010
droGri2
GTCT-GTG--T-----GTATTTGGTGG--------------------------GG----CGGGCAGCGAATTACTTGGGCCAAGTGGATGTAAACTGTG---AAAGCGCATTTTGCATAT-AACAAAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCCGATA-----------TAACGCCACGTGGGT----------------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTT........................................................................................2113447.00344724161031
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTA.......................................................................................2212548.0025481862686
..................................................................................................................................TTTGTTCGTTTGGCTTAAGT.........................................................................................201376.00376194182
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTT.......................................................................................221338.00338213125
...................................................................................................................................TTGTTCGTTTGGCTTAAGTT........................................................................................201198.001981926
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTA.......................................................................................211187.0018717512
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAA......................................................................................231148.001487474
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAT......................................................................................23168.00685018
..................................................................................................................................TTTGTTCGTTTGGCTTAAG..........................................................................................19163.00634023
........................................................................ACTTGGGCCAAGTGGATGTAAACT...............................................................................................................................................24154.00544212
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTT.......................................................................................21117.0017170
...................................................................................................................................TTGTTCGTTTGGCTTAAGT.........................................................................................19115.0015141
....................................................................................................................................TGTTCGTTTGGCTTAAGTT........................................................................................19114.0014131
....................................................................................................................................TGTTCGTTTGGCTTAAGTTA.......................................................................................20111.0011110
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAAA.....................................................................................2419.00954
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAG......................................................................................2318.00853
...................................................................................................................................TTGTTCGTTTGGCTTAAG..........................................................................................1817.00770
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTAT......................................................................................2216.00660
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTAA......................................................................................2216.00660
........................................................................ACTTGGGCCAAGTGGATGTAAAC................................................................................................................................................2316.00660
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTA........................................................................................2114.00422
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTG.......................................................................................2214.00440
........................................................................ACTTGGGCCAAGTGGATGTAA..................................................................................................................................................2114.00413
........................................................................ACTTGGGCCAAGTGGATGTA...................................................................................................................................................2014.00440
........................................................................ACTTGGGCCAAGTGGATGTAAA.................................................................................................................................................2214.00404
.........................................................................CTTGGGCCAAGTGGATGTAAACT...............................................................................................................................................2313.00321
..................................................................................................................................TTTGTTCGTTTGGCTTAA...........................................................................................1813.00330
.....................................................................................................................................GTTCGTTTGGCTTAAGTT........................................................................................1812.00211
....................................................................................................................................TGTTCGTTTGGCTTAAGTTAT......................................................................................2112.00220
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTC.......................................................................................2212.00220
....................................................................................................................................TGTTCGTTTGGCTTAAGT.........................................................................................1812.00220
........................................................................ACTTGGGCCAAGTGGATGTAAACTT..............................................................................................................................................2512.00211
.................................................................................................................................GTTTGTTCGTTTGGCTTAAGTTAA......................................................................................2411.00110
..................................................................................................................................TTTGTTCGTTTGGCTTAAA..........................................................................................1911.00101
....................................................................................................................................TGTTCGTTTGGCTTAAGTTAA......................................................................................2111.00110
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTC........................................................................................2111.00110
............................................................................GGGCCAAGTGGATGTAAACT...............................................................................................................................................2011.00110
......................................................................................................................................TTCGTTTGGCTTAAGTTA.......................................................................................1811.00110
..........................................................................TTGGGCCAAGTGGATGTAAACTG..............................................................................................................................................2311.00110
.........................................................................CTTGGGCCAAGTGGATGTAAA.................................................................................................................................................2111.00110
....................................................................................................................................TGTTCGTTTGGCTTAAGTTT.......................................................................................2011.00110
........................................................................ACTTGGGCCAAGTGGATGT....................................................................................................................................................1911.00101
.....................................................................................................................................GTTCGTTTGGCTTAAGTTA.......................................................................................1911.00110
............................................................................GGGCCAAGTGGATGTAAACTT..............................................................................................................................................2111.00110
..............................................................................GCCAAGTGGATGTAAACT...............................................................................................................................................1811.00101
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTGG......................................................................................2311.00110
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAAAC....................................................................................2511.00110
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTATTTTC..................................................................................2611.00110
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTCA......................................................................................2311.00101
..................................................................................................................................TTTGTTCGTTTGGCTTAAGA.........................................................................................2011.00101
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAC......................................................................................2311.00110
.................................................................................................................................GTTTGTTCGTTTGGCTTAAGTTA.......................................................................................2311.00110
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTAAA.....................................................................................2320.50110
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAAAA....................................................................................2520.50101
..................................................................................................................................TTTGTTCGTTTGGCTTAT...........................................................................................1830.33110
droAna3
GGAA-------------------------------AAGACACCCCACGGAAACGA----GGGGCAGCGAATTACTTGGGCCAAGGGAATTCAAACTGTG---ATCGC-----------AA-TGCTAGAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCGTTG----------CAAACGCCACGTGG------------------------------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTT........................................................................................21115124.00151248181508282475986174
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTA.......................................................................................22111581.0011581702464856166361275
..................................................................................................................................TTTGTTCGTTTGGCTTAAGT.........................................................................................2014855.004855157948575309751
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTT.......................................................................................2213948.003948152519163230931
..................................................................................................................................TTTGTTCGTTTGGCTTAAG..........................................................................................1911139.001139567512351528
...................................................................................................................................TTGTTCGTTTGGCTTAAGTT........................................................................................201654.00654633001191
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTA.......................................................................................211642.00642608210310
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAA......................................................................................231459.00459297851112711
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAT......................................................................................231303.003031093091793
........................................................................ACTTGGGCCAAGGGAATTCAAACT...............................................................................................................................................241233.002337544611790
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTT.......................................................................................211130.0013012500050
...................................................................................................................................TTGTTCGTTTGGCTTAAGT.........................................................................................191121.0012111410060
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTA........................................................................................21179.00799000691
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTC........................................................................................21160.006032900271
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAC......................................................................................23148.004829203140
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTG........................................................................................21147.00473001430
..................................................................................................................................TTTGTTCGTTTGGCTTAAGA.........................................................................................20145.004521001221
........................................................................ACTTGGGCCAAGGGAATTCA...................................................................................................................................................20143.004311011237
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTG.......................................................................................22142.00423800130
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTC.......................................................................................22141.004123200142
...................................................................................................................................TTGTTCGTTTGGCTTAAG..........................................................................................18140.00403900010
....................................................................................................................................TGTTCGTTTGGCTTAAGTT........................................................................................19140.00403900010
....................................................................................................................................TGTTCGTTTGGCTTAAGTTA.......................................................................................20137.00373700000
..........................................................................TTGGGCCAAGGGAATTCAAACT...............................................................................................................................................22130.00302101053
........................................................................ACTTGGGCCAAGGGAATTCAA..................................................................................................................................................21129.002970001210
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTAT.......................................................................................22127.00271000260
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAAA.....................................................................................24127.00271100196
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTAA......................................................................................22124.00242200020
........................................................................ACTTGGGCCAAGGGAATTCAAAC................................................................................................................................................23123.00231070006
..................................................................................................................................TTTGTTCGTTTGGCTTAAGC.........................................................................................20119.00192110240
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTGT.......................................................................................22118.00180000180
........................................................................ACTTGGGCCAAGGGAATTCAAA.................................................................................................................................................22117.00174000112
..................................................................................................................................TTTGTTCGTTTGGCTTAA...........................................................................................18117.00171101230
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTCT.......................................................................................22117.00170000170
.....................................................................................................................................GTTCGTTTGGCTTAAGTT........................................................................................18112.00121101000
.........................................................................CTTGGGCCAAGGGAATTCAAACT...............................................................................................................................................23111.0011900002
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTATT.....................................................................................24111.0011300080
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTTA......................................................................................23110.0010800110
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAG......................................................................................23110.0010900010
.....................................................................................................................................GTTCGTTTGGCTTAAGTTA.......................................................................................19110.0010900010
....................................................................................................................................TGTTCGTTTGGCTTAAGTTT.......................................................................................20110.00101000000
..........................................................................TTGGGCCAAGGGAATTCAAACTGT.............................................................................................................................................2419.009200070
....................................................................................................................................TGTTCGTTTGGCTTAAGT.........................................................................................1819.009900000
..........................................................................TTGGGCCAAGGGAATTCAAACTG..............................................................................................................................................2318.008300050
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTAT......................................................................................2218.008800000
..................................................................................................................................TTTGTTCGTTTGGCTTAAA..........................................................................................1917.007300031
..........................................................................TTGGGCCAAGGGAATTCAAA.................................................................................................................................................2016.006100032
........................................................................ACTTGGGCCAAGGGAATTCAAACC...............................................................................................................................................2416.006050010
........................................................................ACTTGGGCCAAGGGAATTCAAACTT..............................................................................................................................................2515.005100013
.................................................................................................................................GTTTGTTCGTTTGGCTTAAGTT........................................................................................2214.004400000
.....................................................................................................................................GTTCGTTTGGCTTAAGTTT.......................................................................................1924.008700010
.................................................................................................................................GTTTGTTCGTTTGGCTTAAGTTA.......................................................................................2314.004400000
.........................................................................CTTGGGCCAAGGGAATTCAAAC................................................................................................................................................2213.003300000
..................................................................................................................................TTTGTTCGTTTGGCTTAAT..........................................................................................1913.003000030
........................................................................ACTTGGGCCAAGGGAATTC....................................................................................................................................................1913.003200010
........................................................................ACTTGGGCCAAGGGAATTT....................................................................................................................................................1913.003000012
...................................................................................................................................TTGTTCGTTTGGCTTAAGTA........................................................................................2013.003300000
........................................................................ACTTGGGCCAAGGGAATTCT...................................................................................................................................................2013.003200010
..........................................................................TTGGGCCAAGGGAATTCA...................................................................................................................................................1813.003200100
..........................................................................TTGGGCCAAGGGAATTCAAAC................................................................................................................................................2113.003300000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTATTT....................................................................................2513.003200010
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTTC......................................................................................2313.003200010
.....................................................................................................................................GTTCGTTTGGCTTAAGTTAT......................................................................................2012.002200000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAAC.....................................................................................2412.002200000
............................................................................GGGCCAAGGGAATTCAAACT...............................................................................................................................................2012.002200000
........................................................................ACTTGGGCCAAGGGAATTCAT..................................................................................................................................................2112.002000020
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTAC......................................................................................2212.002200000
...................................................................................................................................TTGTTCGTTTGGCTTAAGTC........................................................................................2012.002200000
....................................................................................................................................TGTTCGTTTGGCTTAAGTTAT......................................................................................2112.002200000
....................................................................................................................................TGTTCGTTTGGCTTAAGTTAA......................................................................................2112.002200000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGG.........................................................................................2012.002100010
..........................................................................TTGGGCCAAGGGAATTCAAACTT..............................................................................................................................................2312.002100010
.................................................................................................................................GTTTGTTCGTTTGGCTTAAGT.........................................................................................2112.002200000
droBip1
AGTTGG------------------TGGAGCTCCCAGAGACACCCCACGGAAACGA----GGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---ATCGC-----------AA-TGCTAGAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCGTTG----------CAAACGCCACGTGG------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
------------------------------------------------------------GGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---ATCGC-----------AATTACCAAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCCGAAAAACACACAGACAAACGCCACGTGG------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TTCG--------------------TGGAACCAC--------------CAGATCCC----CGGGCAGCGAATTACTTGGGCCAAGGGGATGCAAACTGTG---ATCGC-----------A---GCTAGAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCGATT----------TAAGCGCCACGTGGT--GG-GAT-----CG--------GATTGTCCACACATAGTATATAGGSizeHit CountTotal NormTotal
No Reads
droEle1
AAA--------------------------------------------------------GGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTA---ATTGC-----------AA-TGCTACAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCTGATT----------TAAACGCCACGTGGT--GGAGATCGGGAG-TAGTTCTGGTTC-----TATATA---------SizeHit CountTotal NormTotal
No Reads
droRho1
GAAC--------------------------TAT--------------CAGTATCC----CGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTT---TTCGC-----------AC-TGCTAGAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCTGATT----------TAAACGCCACGTGGT--GGAGATCGGTTCG--------GTTC-----TATATAATGCGTATCSizeHit CountTotal NormTotal
No Reads
droBia1
GGCG---------------------------------------------GAGTCC----CGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---ATCC-----------------CTAGTAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCGATT----------AAAGCGCCACGTGG------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GTGG--------------------TTT-------AA------------AGTATCCCTTTGGGGCAGCGAATTACTTGGGCCAAGGGGATGCAAACTGTG---ATCG-----------------CTAGAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCGATT----------TAAAGGCCACGTG-------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
TACTCCTGCGT--------------GGA-CTAT--------------CACTATCC----CGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---ATCG-----------------TTAGAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCCGATT----------AAATCGCCACGTGGT--GGAGATCAAATCG--------GATCTAT-----------------SizeHit CountTotal NormTotal
No Reads
dm3
AACCCC--------------------------------------------------TTCCGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---ATC--------------A-TCCCGAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCGACT----------AAAGCGCCACGTGG------------------------------------------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTT........................................................................................211153585.0015358500001260008288220000000078637031161013041414201322141921229262466000032371700000000000000000321341505010053332397186122253759202794663067003211293235111531858446602622912260598121850103910116200106001022319078041000005501102303260261015047110138680216781806001421339756893351640009964107871170200313816770541114102201311178489479372042811041363382300475004423201486208205525203147212400239001002013550110108694122811882512302111158171174257281894217299192588151330982619902975308934011157126662221300214061104203132191352657515765675811445110
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTA.......................................................................................221100626.001006260000247103335737480000010051076702034381615644281110134649142111768400010384340000000000000000053123142706820012675496142915983561600142589873581032020445690173541689257129190151642107251299711015101513010169505243683129700000000040250250030863496284216946481322171000140593732474271064105415866252704000107660044434000130279804566209491051452371121001259003714300104973203731803122461117570501135000000062214302137931152188823175001111271169823316184453192140112143013433213129169933469647031196102251241920009651378913175031998336444773132620237
..................................................................................................................................TTTGTTCGTTTGGCTTAAGT.........................................................................................20124344.0024344000004000020400000000003901000212484180010100304040343000000300000000000000000000010300000055180352351121018301211001007402201809603020007417181110220000010010000120350032000000000001930017001057314016025010000026192968993240001398066700100079201001100024383661521416237924100533004230084502001073031402000800000003000500001213852521800000302927494112324137144923632339178901248178900249392420000310018493936581040151711921531201030
........................................................................ACTTGGGCCAAGGGAATGCAAACT...............................................................................................................................................2418870.00887000001100353110000000000000001000000110000000011003010000000000000000000000000000031124680006029006313443073384000000331712016000000101000000000000000304190000004050000000000000240300061112033000002518250254005302335020008800000000134206810441311126500001000203166039100018602390100080000000100000002147161500000734772348112430283166152480364320021011174610002043100829239924944276941057150510
..................................................................................................................................TTTGTTCGTTTGGCTTAAG..........................................................................................1917693.007693000000000000000000000012700003338110000000010001000000000030000000000000000000000010000002220110102700540100001111010002000000101644951012000005000000000040000000000000003501002833320650010006561201787000397016000000110000000000915190950011000000005100147041000013711800100020010000001001001622306111000007129210138034017572167532040454300351410000000010542111467379412390484000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTT.......................................................................................2216079.0060790000000001000000000000012000000000000001000100000000000000000000000000000000000000000200021100007330043018000001110001200100030002016600000000000000000000500000000000000017130120031316010015100000721612126700013921870000017600000000057301324993122400005200430111010029006301000000000000010100003142001000001191118045753102373133124030212382001061311000000000814191407231276318350000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAA......................................................................................2314461.00446100000200006110000000000180000000000000000020010020101000000000000000000000000000011000000251611612879204229340000309102102202003000302094000100040000000000002000000000000000121701200254215050200020011215149810001200134000000340000000002834161061108154600016944001716022010008013301000100000002000000041411015114000001112111421691397309722141734003692720010410000000000001921451169187231211000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTATC.....................................................................................2413896.003896000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000022951599000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
........................................................................ACTTGGGCCAAGGGAATGCAA..................................................................................................................................................2112048.0020480000000000110000000000010100000000000000000000000001000000000000000000000000000020005010701401132225013719000002130002000000000000000000000000000000000040000000000000000001001000000000000012408220002501000000000300000161003319560001001000000000330900000120150000010000100000000000111021100000521341910511213158601028600153011000000001247309142122271225000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAT......................................................................................2311470.0014700000000001001000000000020000000000000000000000000000000074100000000000000000000000000000004001022100671200000004100701100000200030000000000000000000000000000000000000540100041211010320000045534220003906400000030000000000441334156362100001114900102030000010001200000100000000000000010000100000008333039412102151034107056660002100000000000102315533586773000000
........................................................................ACTTGGGCCAAGGGAATGCAAA.................................................................................................................................................221980.009800000000000010000000000010000000000100000000000000000000000000000000000000000000000000000305004007010620000003001203000000000000000000000000000000000010000000000000000000000200000000000001204310005034000000120000000001271700000001000000003801000004003000001000000000000000001400000000002101188104082232026310021201100020000933188956511087000000
........................................................................ACTTGGGCCAAGGGAATGCA...................................................................................................................................................201894.008940000000000000000000000000000000000170000000000000100000000000000000000000000000000000000041500214600030100000100000100000000000000000000000000000000000000000000000000000000000000000000000803200002015000000000000000000281900001000000000004302000004007000000000000000000000000301000000031001672060002230373400114011000000006711246397143111000000
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTA.......................................................................................211857.008570000000000201000000000080000000000000000000000000000000055100000000000000000000000020000215014051730126010000002107060010000000303010000000000000000000000000000000000024062011814401314000000361551000470510000000260000000023510000220010000010013140300000000200000000000000000000001010600000000222141176090341260264200315001000000003637917264528100000
...................................................................................................................................TTGTTCGTTTGGCTTAAGTT........................................................................................201682.0068200000000000000000000000200000251401000000000000000000000010000000000000000000000000000000000000013001101000000111103011020100020010000000000000000000000000000000000005802000162500000000003490410000270340000000000000000000760000010000000000340200000300500000100000000000000000010001000002003054101301122303253002000000000000048410618263431000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTATC......................................................................................231446.004460000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000262184000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................ACTTGGGCCAAGGGAATGCAAAC................................................................................................................................................231441.00441000000000100000000000000000000000000000000000000000000000000000000000000000000000008000000200100000000200000013010101000000000000000010000030100100005000000000000000100000001000000000000191251000201200000002000000000516100021020100001000670410000800400000000000000000000001020000000002000284101130170101600001010000000003205021356224010000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTATT.....................................................................................241392.003920000000000010000000000000000000000000000000000000000000010000000000000000000000000010000002000001001100000000000000000000000000100000000000000000000000000000000000000100000300000000000004501100003029000000000000000000430121201120000310043040000030020000000000000000000000101000100000000527219901000001502770000000000000100190154141417000010
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTC.......................................................................................221374.00374000002000000000000000002000000000000000000000000010000000000000000000000000000000000100000100001200010000000010000003000000004028600000000000000000000000000000000000011010000000000000000062900009050000000100000000001010000000000001870012010000040010000000000000000000000201000300000102001913111321519502521000020000000000090144195000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAAA.....................................................................................241352.00352000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000101100000000000000000000000000000000000000000001000000000000000000000000000000010000000000000170810001023000000100000000001011000011010000210023010000000000000000000000000000001000010000000002101242040021130242300101001000000002316329143621000000
.......................................................................TACTTGGGCCAAGGGAATGCAA..................................................................................................................................................221235.00235000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100200010000000000000000000000000000000000000000000000000000000000000000000000000000000000000612200006020000000000000000000101000000000000000010010000000010000000000000000000000000000000000000100110100007014100000000000000000300298163418010000
........................................................................ACTTGGGCCAAGGGAATGC....................................................................................................................................................191228.002280000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000100000000000000000000000000000000000000000000004050000003000000000000000000068000000000000000044010000000020000000000000000000000001010000000101011110101007071200000011000000001514910173524000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAC......................................................................................231217.002170000000000000000000000000000000000000000000000000000000000000000000000000000000000003000001000003000100000000001002000000000000000000000000000000000000000000000000000002000100000100000001118000030500000000000000000001000000300000034260031000000030010000000000000000000000000000000000001001281051101120107000010000000000030164469000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTG.......................................................................................221207.002070000110000011000000000020000000000000000000000000000000000000000000000000000000000000000200000008001100000000020000000000000000010000000000000000000000000000000000001000000100000200000001708000012040000000000000000000110000000000000000110100000100600000000000000000000001000000000000010012970301101401110000000000000000013113610105000100
.......................................................................TACTTGGGCCAAGGGAATGCA...................................................................................................................................................211192.00192000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000001000002100000000000200000000000000000000000000000000000000000000000000000000000000000000000801200007011000000000020000000011000000000000000000000000010010000000000000000000000000000000000000000100100001101270000000000000000200394121913000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGA.........................................................................................201189.001890000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000100000000000000000000000000000000000000000000000000000000000000003010000200000000000000000000010000000000000310001010000010010000000000000000000000010000000000100000410600021301515000000000000000023050104917000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTA........................................................................................211168.00168000001000000100000000000000000000000000000000000000000000000000000000000000000000000000000110000100000100000000000000000000000000000100000000000000001000000000000000000100010100000000000814000060400000000000000000003300000100000045000000000000002000000000000000000000021401000000011100011080000110411000000000000000011127351210000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTC........................................................................................211167.001670000020000102000000000020000000000000000000000000000000000000000000000000000000000000000100000002000100000001000000002000000000000000000000000000000000000000000000000000000100000000000011305000017030000000000000100000300000000000001000010200000100100000000000000000000000000000000000002002106000019011120000000000000000501649610000000
..................................................................................................................................TTTGTTCGTTTGGCTTAA...........................................................................................181143.00143000000000000000000000000000001010100000000000000000000000200000000000000000000000000000010000103300010000000010000200000000001300002120000020000000000000000000000000001000001100000200000222410008010000000000000000003780000000000000000100000000000000000000000001000000000000001000001001014301300001105300000000000000001063125000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAG......................................................................................231130.001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010000000000000000000000000000000000000000000000000000000000000000000000000000100000000000008080000502000000110000000000031000001000000000001000000011010000000000000000000000000000000000000101310120006012170000100000000000601528107000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTG........................................................................................21198.00980000000000002000000000010000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000001100000000000200000005010000003000000000000000000060000000000000000000000000020020000000000000000000000000100000000411000000240000120141100000000000000000000210000000
........................................................................ACTTGGGCCAAGGGAATGCAAACTT..............................................................................................................................................25187.008700000000000000000000000000000000000000000000000000000000000000000000000000000000000300000010000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000010000000000000000000220000010000000000000000000000100000000000000000000000010000000000000010000000050120000000000000000612583156000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTTC......................................................................................23184.008400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000010000000000000000000000000000000000000000004632000001000000000000000000000000000000000000000000000000100000000100000000000000000000000100000000
.......................................................................TACTTGGGCCAAGGGAATGCAAA.................................................................................................................................................23178.00780000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001200000000000000000000000000000000000000000000000000000000000000000000000100000000000005040000406000000000000000000000100000000000000000000000001000000000000000000000000000000000000000010100000003004000000000000001050765109000000
...................................................................................................................................TTGTTCGTTTGGCTTAAGT.........................................................................................19177.00770000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000001000000000010001000000000000000000000000000000001100000210000000000003030000403000000000000000000020001101000000000000000000000000000000000000000000000000000000000000000000200005023000000000000000010094375000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGC.........................................................................................20168.00680000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000010000000000000000000000000000001000000000000000000000000000000000000000100000100000000000003010000401000000000000000000040000000000000000000000000000000000000000000000000000001000000000000000110110111605400000000000000004061124000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGG.........................................................................................20164.006400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000000000140100002000000000000000100000100000000000000000000000000100100000000000000000000000000000000000110001111200007061100000000000000004012011000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAA..........................................................................................19163.00630000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004010000102000000000000000000021000000000000000000000000000000000000000000000000000000000000000000000030201006006000000000000000020184235000000
........................................................................ACTTGGGCCAAGGGAATGCAT..................................................................................................................................................21154.005400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000020000000010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000020050000000000000000411023913000000
........................................................................ACTTGGGCCAAGGGAATG.....................................................................................................................................................18154.00540000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000202000000000000000000034000000000000000010000000000010000000000000000000000001000000000000002100100002035000000000000000010112433000000
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTATC.....................................................................................23151.005100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003417000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................TGTTCGTTTGGCTTAAGTT........................................................................................19150.0050000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000010000000000000000000304000040300000000000000000000000000000000000000000000001001000000000000000000000000000000000000001110000000400100000000000000004051724000000
.......................................................................TACTTGGGCCAAGGGAATGC....................................................................................................................................................20142.00420000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000001061000000000000000070111363000000
.......................................................................TACTTGGGCCAAGGGAATGCAAACT...............................................................................................................................................25140.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000010400000000000000000010000000000000000000000000000000000000000000000000000000000000000000000100000000001000000000000000004043663010000
........................................................................ACTTGGGCCAAGGGAATGCAAACTTC.............................................................................................................................................26140.00400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000319000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTT.......................................................................................21138.0038000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000001000000000000000000000000000000000000000000000000010100000000000000000101000000000000000000000000000000000000000000001000000002000000000000000000000000000000000000000100000060000200200000000000000004090014000000
.....................................................................................................................................GTTCGTTTGGCTTAAGTT........................................................................................18138.00380000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000001001000000000000001000000000000000000000000000000000000000000000000000000000000000000000003100000100000000000000000000003100000000000000000000000000000000000000000000000000000000000000000010110010100001300000000000000000020211000000
....................................................................................................................................TGTTCGTTTGGCTTAAGTTA.......................................................................................20134.0034000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000010000010000000000000304000010300000000000000000010000000000000000001001000000000000000000000000000000000000000000000100110000000101000000000000000002042220000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAT..........................................................................................19134.0034000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000101000000000000000000001000000000000000000000000000000000000103000010000000000000000000200000000000000002000000000001000000000000000000000000000000000000000000000030000201000000000000000003080110000000
........................................................................ACTTGGGCCAAGGGAATGCAAAA................................................................................................................................................23132.0032000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000003000000300000000000000000000000000000000000000001000000000000000000000000000000000000000000000000100000000000100000000000000000056235000000
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTAT......................................................................................22132.0032000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000011000000300000000000000000001000000000000031000000000000000000000000000000000000000010000000000010110000000201200000000000000000041141000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAAC.....................................................................................24130.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001413000000000000000000000000000000000000000000000000000000000000000100000000000000000000000002000000
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTATT.....................................................................................23129.0029000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000000000000000000000000000000011000000000000100000020300000000000000000000000000000000000000100000000000000000000000000000000000000010000000000202000000101100000000000000003002022000000
..........................................................................TTGGGCCAAGGGAATGCAAACT...............................................................................................................................................22129.0029000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000100100000000000000000000000000001000000000000000000000000000000000000000200000000002100101000000000002053224000000
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTAA......................................................................................22128.0028000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000100000000000001000000000010000000000000000000000000000000000000000000010000000000000101000000200000000000000000000000000000000001000001000000000000000000000000000000000000000000001000000001100101200000000000000000020133000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAAAA....................................................................................25128.0028000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000301000000200000000000000000000001000000000000002000000000000000000000000000000000000000010000000000200000000102000100000000000003042201000000
........................................................................ACTTGGGCCAAGGGAATGCAAACATC.............................................................................................................................................26128.00280000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000208000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................CTTGGGCCAAGGGAATGCAAACT...............................................................................................................................................23127.0027000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000301000000000000000000000000000100000000000000000200000000000000000000000000000000000000000000000000010000000000200000000000000004023035000000
.......................................................................TACTTGGGCCAAGGGAATGCAAAC................................................................................................................................................24126.0026000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000100000000000000000000200000000000000000000000000001000000000000000000000000000000000000000000000000001300000000000000001051233000000
.....................................................................................................................................GTTCGTTTGGCTTAAGTTA.......................................................................................19124.0024000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000200000010000000000000000000000000000000000000000000000000000000000000000000000000011000000000000210000070000000000000000000003100000000000000000000000000000000000000000000000000000000010000000010100000000000000000000000000000000000000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTTA......................................................................................23122.0022000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000102000000100000000000000000000000000000000012000000000000000000000000000000000000000000000000000000011020100100000000000000000002050001000000
........................................................................ACTTGGGCCAAGGGAATGCAAT.................................................................................................................................................22121.0021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000001000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000001031433000000
...................................................................................................................................TTGTTCGTTTGGCTTAAG..........................................................................................18120.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101112000000000000000000000000000000000010000000000000000000001000010000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000101100000000000000001030101000000
........................................................................ACTTGGGCCAAGGGAATGT....................................................................................................................................................19117.0017000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100200000000000000000033105000000
......................................................................................................................................TTCGTTTGGCTTAAGTTA.......................................................................................18117.0017000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011100010000000000000000000000000000000000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTATTTTC..................................................................................27117.00170000000000000000000000000000000000000000000000000000000041210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTATTTTCA.................................................................................28116.00160000000000000000000000000000000000000000000000000000000061000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AGC---------------------------CAT--------------CCGAATCCCTACCGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---ATC--------------A-TCCCGAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCGACT----------AAAGCGCCACGTGG------------------------------------------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTT........................................................................................21161692.0061692195830051237059673244100244189385396401474216410252599
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTA.......................................................................................22155802.0055802698970332984120102233452282585777272143292249053926110
..................................................................................................................................TTTGTTCGTTTGGCTTAAGT.........................................................................................20113460.001346047883742065961374424432322847021815948
..................................................................................................................................TTTGTTCGTTTGGCTTAAG..........................................................................................1917728.007728233497750124174851116815524802421
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAA......................................................................................2313808.003808921931232240003027926411241075125
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTT.......................................................................................2212826.00282644154423523009311024670002
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAAA.....................................................................................2411167.001167498481317007115803098000
..................................................................................................................................TTTGTTCGTTTGGCTTAA...........................................................................................1811077.00107781660884524111000021011
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTA.......................................................................................2111009.00100914321338313112069051258001
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAT......................................................................................231983.009831738418458761022011416111
...................................................................................................................................TTGTTCGTTTGGCTTAAGTT........................................................................................201769.0076991227465801214402171000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGG.........................................................................................201749.00749346981250000000000000
........................................................................ACTTGGGCCAAGGGAATGCAAACT...............................................................................................................................................241538.005381144931010001370098000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGC.........................................................................................201381.0038125351410000000000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGA.........................................................................................201368.00368283151700210000014000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTC........................................................................................211241.00241182021900000010001000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAC......................................................................................231140.0014069817200003201010001
...................................................................................................................................TTGTTCGTTTGGCTTAAGT.........................................................................................191116.0011621714547000000004000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTG........................................................................................211108.001081617340000000005000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTA........................................................................................21198.009845211500110000024000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTC.......................................................................................22178.0078357090000100008000
...................................................................................................................................TTGTTCGTTTGGCTTAAG..........................................................................................18175.0075070560200000001000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTG.......................................................................................22168.00682304900100000022000
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTT.......................................................................................21153.00530603400000000013000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGAA........................................................................................21149.0049148000000000000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAA..........................................................................................19246.5093478010001000009000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAG......................................................................................23141.0041030230000100104000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTATT.....................................................................................24140.0040122613000000007000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAAAA....................................................................................25139.00391134000011000019000
........................................................................ACTTGGGCCAAGGGAATGCAAAC................................................................................................................................................23138.00382210410000017011000
....................................................................................................................................TGTTCGTTTGGCTTAAGTT........................................................................................19135.0035042272000000000000
......................................................................................................................................TTCGTTTGGCTTAAGTTA.......................................................................................18134.0034491910010000000000
....................................................................................................................................TGTTCGTTTGGCTTAAGTTA.......................................................................................20133.00330221910000000000000
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTAA......................................................................................22126.0026060160000000004000
..................................................................................................................................TTTGTTCGTTTGGCTTAAC..........................................................................................19126.0026224000000000000000
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTAT......................................................................................22125.0025020130000000019000
..................................................................................................................................TTTGTTCGTTTGGCTTAAT..........................................................................................19122.0022219010000000000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAAC.....................................................................................24118.001808700000200001000
.....................................................................................................................................GTTCGTTTGGCTTAAGTT........................................................................................18114.001404052000003000000
........................................................................ACTTGGGCCAAGGGAATGCAA..................................................................................................................................................21112.001200010020000306000
.....................................................................................................................................GTTCGTTTGGCTTAAGTTA.......................................................................................19111.001102017000001000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTACA.....................................................................................24110.001017100000000001000
........................................................................ACTTGGGCCAAGGGAATGCAAA.................................................................................................................................................2219.00900000000000702000
........................................................................ACTTGGGCCAAGGGAATGCA...................................................................................................................................................2019.00900011010000501000
..........................................................................TTGGGCCAAGGGAATGCAAACT...............................................................................................................................................2218.00813200000000101000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTTA......................................................................................2318.00806000000000002000
......................................................................................................................................TTCGTTTGGCTTAAGTTAA......................................................................................1917.00704300000000000000
..................................................................................................................................TTTGTTCGTTTGGCT..............................................................................................1527.001400000010148000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTAT.......................................................................................2216.00605000000000001000
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTAAA.....................................................................................2316.00603200000000001000
........................................................................ACTTGGGCCAAGGGAATGC....................................................................................................................................................1915.00501003000000100000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTCT.......................................................................................2215.00504010000000000000
..................................................................................................................................TTTGTTCGTTTGGCTTA............................................................................................1714.00400000000300001000
........................................................................ACTTGGGCCAAGGGAATGCAAACTT..............................................................................................................................................2514.00400000000000301000
.................................................................................................................................GTTTGTTCGTTTGGCTTAAGTT........................................................................................2214.00400040000000000000
........................................................................ACTTGGGCCAAGGGAATGCAT..................................................................................................................................................2114.00400000000000004000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTGT.......................................................................................2214.00402020000000000000
.................................................................................................................................GTTTGTTCGTTTGGCTTAAGTTA.......................................................................................2314.00400040000000000000
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTAC......................................................................................2214.00402000000000002000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTAC.......................................................................................2214.00404000000000000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAAA.........................................................................................2053.4017115000000000001000
........................................................................ACTTGGGCCAAGGGAATGCAAACC...............................................................................................................................................2413.00301000000000200000
..................................................................................................................................TTTGTTCGTTTGGCTTAG...........................................................................................1813.00303000000000000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTAG.......................................................................................2213.00301000000000002000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGGG........................................................................................2113.00303000000000000000
...................................................................................................................................TTGTTCGTTTGGCTTAAGTG........................................................................................2013.00300030000000000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAAG.....................................................................................2413.00300000010000002000
.......................................................................TACTTGGGCCAAGGGAATGCAAACT...............................................................................................................................................2513.00300000000000300000
..................................................................................................................................TTTGTTCGTTTGGCTT.............................................................................................1613.00300000000011001000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTTAA.....................................................................................2422.50514000000000000000
droSec2
AGC---------------------------CAT--------------CCGAATCCCTCCCGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---ATC--------------A-TCCCGAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCGACT----------AAAGCGCCACGTGG------------------------------------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTT........................................................................................21131577.003157717403124691229476
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTA.......................................................................................22127821.00278211662378433003352
..................................................................................................................................TTTGTTCGTTTGGCTTAAGT.........................................................................................2014042.0040421641220811479
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTT.......................................................................................2212943.002943137415231828
........................................................................ACTTGGGCCAAGGGAATGCAAACT...............................................................................................................................................2411740.00174063335131428
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTA.......................................................................................2111530.001530142073361
...................................................................................................................................TTGTTCGTTTGGCTTAAGTT........................................................................................2011430.001430136052144
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAA......................................................................................2311028.0010285044426220
..................................................................................................................................TTTGTTCGTTTGGCTTAAG..........................................................................................191653.006534111882430
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAT......................................................................................231359.00359169168193
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTT.......................................................................................211124.001241111300
...................................................................................................................................TTGTTCGTTTGGCTTAAGT.........................................................................................191115.00115109420
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTG........................................................................................21195.009593200
........................................................................ACTTGGGCCAAGGGAATGCAAAC................................................................................................................................................23190.00901120554
........................................................................ACTTGGGCCAAGGGAATGCAA..................................................................................................................................................21177.0077557105
....................................................................................................................................TGTTCGTTTGGCTTAAGTTA.......................................................................................20177.007770241
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAAA.....................................................................................24176.00761252102
....................................................................................................................................TGTTCGTTTGGCTTAAGTT........................................................................................19163.006361020
........................................................................ACTTGGGCCAAGGGAATGCAAA.................................................................................................................................................22157.0057535152
........................................................................ACTTGGGCCAAGGGAATGCA...................................................................................................................................................20154.00541024191
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTAA......................................................................................22146.004641500
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTC.......................................................................................22141.0041132521
........................................................................ACTTGGGCCAAGGGAATGC....................................................................................................................................................19135.003538222
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAC......................................................................................23135.0035111752
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTA........................................................................................21133.0033211101
...................................................................................................................................TTGTTCGTTTGGCTTAAG..........................................................................................18132.003231100
..................................................................................................................................TTTGTTCGTTTGGCTTAAGA.........................................................................................20129.0029111503
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTG.......................................................................................22121.002113530
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAG......................................................................................23120.002011810
........................................................................ACTTGGGCCAAGGGAATGCAAACTT..............................................................................................................................................25118.00182835
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTTA......................................................................................23116.001614200
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTATT.....................................................................................24116.001641020
..................................................................................................................................TTTGTTCGTTTGGCTTAAGG.........................................................................................20116.001614200
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTGT.......................................................................................22112.001212000
.................................................................................................................................GTTTGTTCGTTTGGCTTAAGTTA.......................................................................................23112.001212000
..................................................................................................................................TTTGTTCGTTTGGCTTAA...........................................................................................18111.00115060
.........................................................................CTTGGGCCAAGGGAATGCAAACT...............................................................................................................................................23111.00119110
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTC........................................................................................21110.00102800
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTAT......................................................................................22110.00107300
.....................................................................................................................................GTTCGTTTGGCTTAAGTTA.......................................................................................19110.00108011
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTG.......................................................................................2119.0099000
......................................................................................................................................TTCGTTTGGCTTAAGTTA.......................................................................................1819.0097200
..........................................................................TTGGGCCAAGGGAATGCAAACT...............................................................................................................................................2219.0090450
.......................................................................TACTTGGGCCAAGGGAATGCAAACT...............................................................................................................................................2519.0090180
....................................................................................................................................TGTTCGTTTGGCTTAAGTTT.......................................................................................2018.0087100
.................................................................................................................................GTTTGTTCGTTTGGCTTAAGTT........................................................................................2217.0077000
.....................................................................................................................................GTTCGTTTGGCTTAAGTT........................................................................................1817.0076100
..................................................................................................................................TTTGTTCGTTTGGCTTAAGC.........................................................................................2016.0061500
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAAAA....................................................................................2516.0062220
..................................................................................................................................TTTGTTCGTTTGGCTTAAGAA........................................................................................2115.0050500
........................................................................ACTTGGGCCAAGGGAATGCAAACA...............................................................................................................................................2415.0051310
....................................................................................................................................TGTTCGTTTGGCTTAAGT.........................................................................................1815.0055000
........................................................................ACTTGGGCCAAGGGAATGCAT..................................................................................................................................................2115.0050401
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTAC......................................................................................2215.0053101
.......................................................................TACTTGGGCCAAGGGAATGCAA..................................................................................................................................................2214.0041210
........................................................................ACTTGGGCCAAGGGAATG.....................................................................................................................................................1814.0040121
...................................................................................................................................TTGTTCGTTTGGCTTAAGTG........................................................................................2014.0044000
........................................................................ACTTGGGCCAAGGGAATGCAACT................................................................................................................................................2314.0040040
..................................................................................................................................TTTGTTCGTTTGGCTTAAC..........................................................................................1914.0041300
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTCT.......................................................................................2213.0030300
........................................................................ACTTGGGCCAAGGGAATGCAAACTA..............................................................................................................................................2513.0030111
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAAG.....................................................................................2413.0030300
.......................................................................TACTTGGGCCAAGGGAATGCA...................................................................................................................................................2113.0030300
.......................................................................TACTTGGGCCAAGGGAATGCAAAC................................................................................................................................................2413.0031101
.......................................................................TACTTGGGCCAAGGGAATGC....................................................................................................................................................2013.0030210
..................................................................................................................................TTTGTTCGTTTGGCTTAAT..........................................................................................1913.0032100
..................................................................................................................................TTTGTTCGTTTGGCTTAAA..........................................................................................1922.5053101
....................................................................................................................................TGTTCGTTTGGCTTAAGTTAT......................................................................................2112.0022000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTTG......................................................................................2312.0022000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTGG......................................................................................2312.0022000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTCA......................................................................................2312.0021100
droYak3
GGAG-------------------------CCAT--------------CCGAGTCC----CGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---ATGC-----------------CTAGTAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCGACT----------AAAGCGCCACGTGG------------------------------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTT........................................................................................21135151.0035151140521767728710365167432380260
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTA.......................................................................................22131462.003146256519472726540050100358171210
..................................................................................................................................TTTGTTCGTTTGGCTTAAGT.........................................................................................2013568.0035683212033328093582730102
........................................................................ACTTGGGCCAAGGGAATGCAAACT...............................................................................................................................................2413027.003027374263822401870000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTT.......................................................................................2211853.00185336135114951122990000
...................................................................................................................................TTGTTCGTTTGGCTTAAGTT........................................................................................2011800.0018004177111000140000
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTA.......................................................................................2111704.0017041167018000150000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAA......................................................................................2311500.0015001281061739572141020
..................................................................................................................................TTTGTTCGTTTGGCTTAAG..........................................................................................191720.007201574021427101240130
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTC........................................................................................211442.004428143000120000
........................................................................ACTTGGGCCAAGGGAATGCAAACC...............................................................................................................................................241406.004060040600000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAT......................................................................................231306.003062520525003480000
........................................................................ACTTGGGCCAAGGGAATGCAAAC................................................................................................................................................231273.0027301624860030000
...................................................................................................................................TTGTTCGTTTGGCTTAAGT.........................................................................................191151.001510148100020000
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTT.......................................................................................211120.001200118100010000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAAA.....................................................................................241109.0010957265100200000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGC.........................................................................................201102.001022227600020000
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTAA......................................................................................221100.00100099100000000
....................................................................................................................................TGTTCGTTTGGCTTAAGTTA.......................................................................................20196.0096093000030000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTG.......................................................................................22181.0081069420060000
....................................................................................................................................TGTTCGTTTGGCTTAAGTT........................................................................................19180.0080073100150000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTC.......................................................................................22175.00758174000181000
........................................................................ACTTGGGCCAAGGGAATGCAA..................................................................................................................................................21159.00590179011310000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAC......................................................................................23155.00559251700130000
........................................................................ACTTGGGCCAAGGGAATGCA...................................................................................................................................................20137.00370151101190000
........................................................................ACTTGGGCCAAGGGAATGCAAA.................................................................................................................................................22136.00360810300150000
...................................................................................................................................TTGTTCGTTTGGCTTAAG..........................................................................................18133.0033033000000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTA........................................................................................21128.0028223200010000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAG......................................................................................23126.0026115000190000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGG.........................................................................................20123.0023174100010000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGA.........................................................................................20120.0020413100020000
.....................................................................................................................................GTTCGTTTGGCTTAAGTTA.......................................................................................19119.0019115000030000
..................................................................................................................................TTTGTTCGTTTGGCTTAA...........................................................................................18116.001629101120000
.................................................................................................................................GTTTGTTCGTTTGGCTTAAGTT........................................................................................22116.0016115000000000
....................................................................................................................................TGTTCGTTTGGCTTAAGT.........................................................................................18114.0014013000010000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTATT.....................................................................................24113.001343210030000
.........................................................................CTTGGGCCAAGGGAATGCAAACT...............................................................................................................................................23112.001205700000000
.......................................................................TACTTGGGCCAAGGGAATGCAAACT...............................................................................................................................................25112.001204700010000
.....................................................................................................................................GTTCGTTTGGCTTAAGTT........................................................................................18111.0011010000010000
.................................................................................................................................GTTTGTTCGTTTGGCTTAAGTTA.......................................................................................23110.0010010000000000
..........................................................................TTGGGCCAAGGGAATGCAAACT...............................................................................................................................................22110.001002700010000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTG........................................................................................2119.00910800000000
........................................................................ACTTGGGCCAAGGGAATGC....................................................................................................................................................1919.00903200040000
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTAT......................................................................................2218.00807100000000
......................................................................................................................................TTCGTTTGGCTTAAGTTA.......................................................................................1817.00725000000000
........................................................................ACTTGGGCCAAGGGAATGCAAACTT..............................................................................................................................................2516.00602400000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTTA......................................................................................2316.00606000000000
...........................................................................TGGGCCAAGGGAATGCAAACT...............................................................................................................................................2116.00600500010000
....................................................................................................................................TGTTCGTTTGGCTTAAGTTAA......................................................................................2115.00505000000000
........................................................................ACTTGGGCCAAGGGAATGCAT..................................................................................................................................................2115.00503000020000
..........................................................................TTGGGCCAAGGGAATGCAAACTGT.............................................................................................................................................2414.00401300000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTGG......................................................................................2314.00404000000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAA..........................................................................................1923.50734000000000
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTAAA.....................................................................................2313.00303000000000
.........................................................................CTTGGGCCAAGGGAATGCA...................................................................................................................................................1913.00303000000000
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTAC......................................................................................2213.00303000000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTGA......................................................................................2313.00303000000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGAC........................................................................................2113.00300300000000
....................................................................................................................................TGTTCGTTTGGCTTAAGTTT.......................................................................................2023.00606000000000
.........................................................................CTTGGGCCAAGGGAATGCAAAC................................................................................................................................................2213.00302100000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTTC......................................................................................2313.00303000000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAGA.....................................................................................2412.00202000000000
.....................................................................................................................................GTTCGTTTGGCTTAAGTTAA......................................................................................2012.00202000000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAAC.....................................................................................2412.00220000000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGCC........................................................................................2112.00200200000000
droEre2
GCCT--------------------TGGAGCCAC--------------CACCATCC----CGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---ATGC-----------------CTAGTAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCGACT----------AAAGCGCCACGT--------------------------------------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTT........................................................................................21156500.00565002563514533901252684520520
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTA.......................................................................................22148975.00489752162920143052722322815270
..................................................................................................................................TTTGTTCGTTTGGCTTAAGT.........................................................................................2018115.00811524188150453172450
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTT.......................................................................................2214850.0048502180253112535780
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAA......................................................................................2312361.0023617602716514261270
...................................................................................................................................TTGTTCGTTTGGCTTAAGTT........................................................................................2012009.002009195531040100
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTA.......................................................................................2111746.00174616914014280
........................................................................ACTTGGGCCAAGGGAATGCAAACT...............................................................................................................................................2411093.00109390154101403603390
..................................................................................................................................TTTGTTCGTTTGGCTTAAG..........................................................................................1921071.50214349631631527980
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAT......................................................................................231724.00724186571508170
........................................................................ACTTGGGCCAAGGGAATGCAA..................................................................................................................................................211178.0017813015143160
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTT.......................................................................................211175.00175166000720
...................................................................................................................................TTGTTCGTTTGGCTTAAGT.........................................................................................191165.00165157010700
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAAA.....................................................................................241130.0013015011102110
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTG........................................................................................211116.00116111110300
........................................................................ACTTGGGCCAAGGGAATGCA...................................................................................................................................................201115.001151701184120
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTG.......................................................................................22195.0095410115020
....................................................................................................................................TGTTCGTTTGGCTTAAGTTA.......................................................................................20192.009290200000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTC.......................................................................................22187.00873011004330
....................................................................................................................................TGTTCGTTTGGCTTAAGTT........................................................................................19182.008277100220
........................................................................ACTTGGGCCAAGGGAATGCAAAC................................................................................................................................................23179.00799240629110
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTC........................................................................................21175.0075459101100
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAC......................................................................................23171.0071203014340
........................................................................ACTTGGGCCAAGGGAATGCAAA.................................................................................................................................................22165.006531064870
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAG......................................................................................23161.0061220003450
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTAA......................................................................................22155.005554000100
........................................................................ACTTGGGCCAAGGGAATGC....................................................................................................................................................19138.003822042280
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTATT.....................................................................................24133.003331002900
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTA........................................................................................21231.5063333002610
..................................................................................................................................TTTGTTCGTTTGGCTTAAGA.........................................................................................20226.0052140003530
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTTA......................................................................................23121.002112000900
...................................................................................................................................TTGTTCGTTTGGCTTAAG..........................................................................................18221.004240000110
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTAT......................................................................................22116.001615000100
.................................................................................................................................GTTTGTTCGTTTGGCTTAAGTT........................................................................................22116.001616000000
........................................................................ACTTGGGCCAAGGGAATGCAAACC...............................................................................................................................................24115.001501500000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTGT.......................................................................................22113.001312000100
........................................................................ACTTGGGCCAAGGGAATGCAAACTT..............................................................................................................................................25112.00121000740
.....................................................................................................................................GTTCGTTTGGCTTAAGTT........................................................................................18111.00116000230
.................................................................................................................................GTTTGTTCGTTTGGCTTAAGTTA.......................................................................................23110.001010000000
.....................................................................................................................................GTTCGTTTGGCTTAAGTTA.......................................................................................19110.00107000300
...................................................................................................................................TTGTTCGTTTGGCTTAAGTTG.......................................................................................2119.0099000000
.........................................................................CTTGGGCCAAGGGAATGCAAACT...............................................................................................................................................2319.0095002020
..................................................................................................................................TTTGTTCGTTTGGCTTAA...........................................................................................1828.00168000710
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTGG......................................................................................2317.0077000000
..................................................................................................................................TTTGTTCGTTTGGCTTAAGG.........................................................................................2036.331912001510
........................................................................ACTTGGGCCAAGGGAATG.....................................................................................................................................................1816.0060000420
....................................................................................................................................TGTTCGTTTGGCTTAAGT.........................................................................................1816.0066000000
........................................................................ACTTGGGCCAAGGGAATGCAT..................................................................................................................................................2116.0060000600
..................................................................................................................................TTTGTTCGTTTGGCTTAAA..........................................................................................1925.50111000910
....................................................................................................................................TGTTCGTTTGGCTTAAGTTT.......................................................................................2025.00109000100
.......................................................................TACTTGGGCCAAGGGAATGCA...................................................................................................................................................2115.0051000310
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTATA.....................................................................................2414.0040000220
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTATTT....................................................................................2514.0040000400
.......................................................................TACTTGGGCCAAGGGAATGCAA..................................................................................................................................................2214.0040001210
..........................................................................TTGGGCCAAGGGAATGCAAACT...............................................................................................................................................2214.0040101200
..........................................................................TTGGGCCAAGGGAATGCAAACTGT.............................................................................................................................................2414.0041010110
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTTG......................................................................................2323.5075000200
..................................................................................................................................TTTGTTCGTTTGGCTTAAGTTAAG.....................................................................................2413.0031000200
......................................................................................................................................TTCGTTTGGCTTAAGTTA.......................................................................................1813.0032000100
.........................................................................CTTGGGCCAAGGGAATGCAA..................................................................................................................................................2013.0031000200
....................................................................................................................................TGTTCGTTTGGCTTAAGTTAG......................................................................................2113.0033000000

Generated: 10/20/2015 at 07:30 PM