ID:

dpe_1290

 Coordinate:

scaffold_2650:2363-2421 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.4 -4.4 -4.0

Flybase annnotation

CDS [Dper\GL16675-cds]; exon [dper_GLEANR_185:2]; CDS [Dper\GL16675-cds]; exon [dper_GLEANR_185:1]; intron [Dper\GL16675-in]

No Repeatable elements found

mature
  1. scaffold_430:2175-2197 -
  2. dpe_933  scaffold_186:38698-38720 +
  3. dpe_1290  scaffold_2650:2399-2421 -
  4. scaffold_7065:660-682 -
star

Sense Strand Reads

##################################################-----------------------------------------------------------##################################################
TGGATCATTTCGAGCATAACTTGCAGGAAGAAAGTTTCTTCAAAAATGTGGTAAGTGTTTTGCGTGAAATTCACGAGCTAAAAATATATTCAAAAATAATTCTGTACAGATCGCAGAGTTAATGATGTCGGGCGAGAAAGCATTCGACAAATGGATTCG
**************************************************............(((((...)))))..................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V111
male body		 M021
embryo
 V057
head
 V050
head
 V042
embryo
..................................................GTAAGTGTTTTGCGTGAAATTCA...................................................................................... 23 0 4 0.75 3 0 3 0 0 0 0
....................................................................................................................................CGAGAAAGCATTCGACAAATGGAT... 24 0 19 0.37 7 6 1 0 0 0 0
.........................................................................................................ACAGATCGCAGAGTTAATGATGTC.............................. 24 0 19 0.26 5 1 4 0 0 0 0
...................................................TAAGTGTTTTGCGTGAAATTC....................................................................................... 21 0 4 0.25 1 1 0 0 0 0 0
..................................................GTAAGTGTTTTGCGTGAAATTCACGA................................................................................... 26 0 4 0.25 1 0 1 0 0 0 0
................................................................................................TAATTCTGTACAGATCGCAGAGT........................................ 23 0 19 0.21 4 4 0 0 0 0 0
......................................................................................................................TTAATGATGTCGGGCGAGAA..................... 20 0 20 0.20 4 0 0 3 0 0 1
.........................................................................................................TGTGATCGCAGAGTTAATGATGTCGGG........................... 27 3 19 0.16 3 1 2 0 0 0 0
.............................................................................................AAATAATTCTGTACAGATCGC............................................. 21 0 19 0.16 3 0 0 3 0 0 0
..................................................................................................................AGAGTTAATGATGTCGGG........................... 18 0 20 0.15 3 1 1 1 0 0 0
.........................................................................................................TGTGATCGCAGAGTTAATGATGTCGGGC.......................... 28 3 19 0.11 2 0 2 0 0 0 0
....................................................................................................................................CGAGAAAGCATTCGACAAATGGA.... 23 0 19 0.11 2 2 0 0 0 0 0
.................................GTTTCTTCAAAAATGTGGTA.......................................................................................................... 20 0 13 0.08 1 1 0 0 0 0 0
...............................................GTGGTAAGTGTTTTGCGTGA............................................................................................ 20 0 14 0.07 1 1 0 0 0 0 0
..........................................AAAATGTGGTAAGTGTTTTGC................................................................................................ 21 0 15 0.07 1 1 0 0 0 0 0
TGGATCATTTCGAGCATAACTTGCAGG.................................................................................................................................... 27 0 16 0.06 1 1 0 0 0 0 0
.....................TGCAGGAAGAAAGTTTCTTCAAAAA................................................................................................................. 25 0 17 0.06 1 0 0 0 1 0 0
................TAACTTGCGGGAAGAAAGTTTCTT....................................................................................................................... 24 1 17 0.06 1 1 0 0 0 0 0
................TAACTTGCAGGAAGAAAGTTTCTTCAAC................................................................................................................... 28 1 17 0.06 1 0 1 0 0 0 0
....................................................................................................................................CGAGAAAGCATTCGACAAATGGATT.. 25 0 19 0.05 1 1 0 0 0 0 0
..................................................................................................ATTCTGTACAGATCGCAGAGT........................................ 21 0 19 0.05 1 1 0 0 0 0 0
................................................................................................................................CGGGCGAGAAAGCATTCGACAAAT....... 24 0 19 0.05 1 1 0 0 0 0 0
................................................................................................TAATTCTGTACACATCGCAGAGT........................................ 23 1 19 0.05 1 1 0 0 0 0 0
..............................................................................................................TCGCAGAGTTAATGATGTCGG............................ 21 0 19 0.05 1 1 0 0 0 0 0
.....................................................................................................................................GAGAAAGCATTCGACAAATGGAT... 23 0 19 0.05 1 1 0 0 0 0 0
.........................................................................................................ACAGATCGCAGAGTTAATGATGT............................... 23 0 19 0.05 1 1 0 0 0 0 0
..............................................................................................................TCGCAGAGATAATGATGTCGGG........................... 22 1 19 0.05 1 1 0 0 0 0 0
....................................................................................................................................CGAGAAAGCATTCGACAAATGT..... 22 1 19 0.05 1 1 0 0 0 0 0
...............................................................................................................CGCAGAGTTAATGATGTCGGGCGAGAA..................... 27 0 19 0.05 1 1 0 0 0 0 0
....................................................................................................TCTGTACAGATCGCAGAGTTAATGAT................................. 26 0 19 0.05 1 1 0 0 0 0 0
......................................................................................................TGTACAGATCGCAGAGTTAATGATGT............................... 26 0 19 0.05 1 1 0 0 0 0 0
.....................................................................................................................................GAGAAAGCATTCGACAAATGGATTC. 25 0 19 0.05 1 1 0 0 0 0 0
.........................................................................................................ACAGATCGCAGAGTTAATG................................... 19 0 19 0.05 1 1 0 0 0 0 0
............................................................................................................TATCGCAGAGTTAATGATGTCGGG........................... 24 1 19 0.05 1 1 0 0 0 0 0
..............................................................................................................TCGCAGAGTTAATGATGTCGGG........................... 22 0 19 0.05 1 1 0 0 0 0 0
......................................................................................................TGTACAGAGCGCAGAGTTAATGATG................................ 25 1 19 0.05 1 1 0 0 0 0 0
.........................................................................................................TGTGATCGCAGAGTTAATGATGT............................... 23 3 19 0.05 1 0 1 0 0 0 0
...................................................................................................................GAGTTAATGATGTCGGGCGAGAAAGC.................. 26 0 19 0.05 1 0 1 0 0 0 0
..........................................................................................CAAAAATAATTCTGTACAGAT................................................ 21 0 19 0.05 1 1 0 0 0 0 0
.........................................................................................................ACAGATCGCAGAGTTAATGATGTCGGG........................... 27 0 19 0.05 1 0 0 0 0 1 0
........................................................................................................TACAGATCGCAGAGTTAATGATGT............................... 24 0 19 0.05 1 0 1 0 0 0 0
..........................................................................................................CAGATCGCTGAGTTAATGATG................................ 21 1 19 0.05 1 1 0 0 0 0 0
...............................................................................................................CGCAGAGTTAATGATGTCGGG........................... 21 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................TGATGTCGGGCGAGAAAGCATTCGA............ 25 0 20 0.05 1 0 0 1 0 0 0
................................................................................................................GCAGAGTTAATGATGTCGGGCG......................... 22 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................TGATGTCGGGCGAGAAAGCT................. 20 1 20 0.05 1 1 0 0 0 0 0
....................................................................................................TCTGTACAGATCGCAGAGT........................................ 19 0 20 0.05 1 0 0 1 0 0 0
................................................................................................................GCAGGGTTAATGATGTCGGGCGAGA...................... 25 1 20 0.05 1 1 0 0 0 0 0
..................................................................................................................AGAGTTAATGATGTCGGGCGT........................ 21 1 20 0.05 1 0 0 1 0 0 0
......................................................................TCACGAGCTAAAAATATATTC.................................................................... 21 0 20 0.05 1 1 0 0 0 0 0
...............................................................................................................CGCAGAGTTAATGATGTCGGGCG......................... 23 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................TGATGTCGGGCGAGAAAGCATTCGG............ 25 1 20 0.05 1 0 0 1 0 0 0
................................................................................................TAATTCTGTACAGATCGCAG........................................... 20 0 20 0.05 1 1 0 0 0 0 0
................................................................................................................GCAGAGTTAATGATGTCGGGC.......................... 21 0 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

ACCTAGTAAAGCTCGTATTGAACGTCCTTCTTTCAAAGAAGTTTTTACACCATTCACAAAACGCACTTTAAGTGCTCGATTTTTATATAAGTTTTTATTAAGACATGTCTAGCGTCTCAATTACTACAGCCCGCTCTTTCGTAAGCTGTTTACCTAAGC
**************************************************............(((((...)))))..................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
 V111
male body		 V042
embryo
...................................................................................................................CTCAATTACTACAGCCCGCTCTTTCGT................. 27 0 19 10.53 200 127 73 0 0
..............................................................................................................AGCGTCTCAATTACTACAGCCCGCTCTT..................... 28 0 18 6.06 109 7 102 0 0
................................TCAAAGAAGTTTTTACACCATTCACAAA................................................................................................... 28 0 13 6.00 78 76 0 2 0
..............................................................................................................AGCGTCTCAATTACTACAGCCCGCTCT...................... 27 0 18 5.11 92 8 84 0 0
...............................TTCAAAGAAGTTTTTACACCATTCACAAA................................................................................................... 29 0 13 3.38 44 43 1 0 0
...................................................................................................................CTCAATTACTACAGCCCGCTCTTTCG.................. 26 0 19 2.53 48 24 24 0 0
.................................CAAAGAAGTTTTTACACCATTCACAAA................................................................................................... 27 0 13 2.31 30 27 0 1 2
......................................................................................ATAAGTTTTTATTAAGACATGTCTAGCGT............................................ 29 0 19 2.26 43 16 25 2 0
..............................................................................................................AGCGTCTCAATTACTACAGCCCGCTC....................... 26 0 18 1.61 29 4 25 0 0
....................................................................................................................TCAATTACTACAGCCCGCTCTTTCGT................. 26 0 19 1.21 23 23 0 0 0
........................................................................................AAGTTTTTATTAAGACATGTCTAGCGT............................................ 27 0 19 1.11 21 15 3 2 1
................................................................................................................CGTCTCAATTACTACAGCCCGCTCTT..................... 26 0 20 1.10 22 3 19 0 0
.................................................................................................................................CCCGCTCTTTCGTAAGCTGTTTACCT.... 26 0 19 1.05 20 19 0 0 1
................................................................ACTTTAAGTGCTCGATTTTTATAT....................................................................... 24 0 4 1.00 4 1 0 2 1
.................................................................CTTTAAGTGCTCGATTTTTAT......................................................................... 21 0 4 1.00 4 4 0 0 0
................................................................................TTTTATATAAGTTTTTATTAAGACAT..................................................... 26 0 19 0.95 18 17 1 0 0
.CCTAGTAAAGCTCGTATTGAACGTCCT................................................................................................................................... 27 0 16 0.94 15 15 0 0 0
......................................................................................ATAAGTTTTTATTAAGACATGTCT................................................. 24 0 19 0.89 17 11 6 0 0
..CTAGTAAAGCTCGTATTGAACGTCCT................................................................................................................................... 26 0 16 0.81 13 13 0 0 0
......................................................CACAAAACGCACTTTAAGTGCTCGATT.............................................................................. 27 0 4 0.75 3 3 0 0 0
................................................................................................................CGTCTCAATTACTACAGCCCGCTCT...................... 25 0 20 0.75 15 2 13 0 0
............................................................................................TTTTATTAAGACATGTCTAGCGT............................................ 23 0 19 0.68 13 6 6 0 1
................................................................................................................CGTCTCAATTACTACAGCCCGCTCTTT.................... 27 0 19 0.68 13 0 13 0 0
..............................................................................................................AGCGTCTCAATTACTACAGCCCGCTCTTT.................... 29 0 17 0.65 11 0 11 0 0
..............................................................................................................AGCGTCTCAATTACTACAGCCCGCT........................ 25 0 19 0.63 12 3 9 0 0
................................TCAAAGAAGTTTTTACACCGTTCACAAA................................................................................................... 28 1 13 0.62 8 8 0 0 0
.CCTAGTAAAGCTCGTATTGAACGT...................................................................................................................................... 24 0 16 0.56 9 9 0 0 0
.....................................................................................................................CAATTACTACAGCCCGCTCTTTCGT................. 25 0 19 0.53 10 10 0 0 0
.............................................................................................................................ACAGCCCGCTCTTTCGTAAGCTGT.......... 24 0 19 0.53 10 10 0 0 0
.............................................................CGCACTTTAAGTGCTCGATTTTTAT......................................................................... 25 0 4 0.50 2 2 0 0 0
.....................................................TCACAAAACGCACTTTAAGTGCTCGAT............................................................................... 27 0 4 0.50 2 2 0 0 0
...................................................................TTAAGTGCTCGATTTTTATATAAGT................................................................... 25 0 4 0.50 2 2 0 0 0
..CTAGTAAAGCTCGTATTGAACGT...................................................................................................................................... 23 0 16 0.50 8 8 0 0 0
.....................................................TCACAAAACGCACTTTAAGTGCTCGATT.............................................................................. 28 0 4 0.50 2 2 0 0 0
...............................TTCAAAGAAGTTTTTACACCATTCACAA.................................................................................................... 28 0 13 0.46 6 6 0 0 0
................................................................................................................CGTCTCAATTACTACAGCCCGCTC....................... 24 0 20 0.45 9 0 9 0 0
.......AAAGCTCGTATTGAACGTCCTTCT................................................................................................................................ 24 0 18 0.44 8 7 0 0 1
.............................................................................................................TAGCGTCTCAATTACTACAGCCCGCTCTT..................... 29 0 18 0.44 8 1 7 0 0
....................................AGAAGTTTTTACACCATTCACAAA................................................................................................... 24 0 14 0.43 6 6 0 0 0
............................................................................................................CTAGCGTCTCAATTACTACAGCCC........................... 24 0 19 0.37 7 6 1 0 0
.................................................................................TTTATATAAGTTTTTATTAAGACAT..................................................... 25 0 19 0.37 7 7 0 0 0
..................................AAAGAAGTTTTTACACCATTCACAAA................................................................................................... 26 0 14 0.36 5 5 0 0 0
.........................................................................................................................TACTACAGCCCGCTCTTTCGTAAG.............. 24 0 20 0.35 7 7 0 0 0
......................................................................................................ACATGTCTAGCGTCTCAATTACTACAG.............................. 27 0 19 0.32 6 6 0 0 0
..................................................................................................TAAGACATGTCTAGCGTCTCAATTACT.................................. 27 0 19 0.32 6 5 1 0 0
ACCTAGTAAAGCTCGTATTGAACGT...................................................................................................................................... 25 0 16 0.31 5 4 0 0 1
............................TCTTTCAAAGAAGTTTTTACACCATT......................................................................................................... 26 0 13 0.31 4 4 0 0 0
..................TGAACGTCCTTCTTTCAAAGAAGT..................................................................................................................... 24 0 17 0.29 5 5 0 0 0
.......AAAGCTCGTATTGAACGTCCTTCTTT.............................................................................................................................. 26 0 18 0.28 5 5 0 0 0
...............................................................................................................................AGCCCGCTCTTTCGTAAGCTGT.......... 22 0 19 0.26 5 5 0 0 0
.................................................................................TTTATATAAGTTTTTATTAAGACATGTCT................................................. 29 0 19 0.26 5 5 0 0 0
......................................................................................ATAAGTTTTTATTAAGACATGTCTAG............................................... 26 0 19 0.26 5 4 1 0 0
..................................................................................TTATATAAGTTTTTATTAAGACATGTCT................................................. 28 0 19 0.26 5 3 2 0 0
.........................................................................................................TGTCTAGCGTCTCAATTACTACAGCCC........................... 27 0 19 0.26 5 0 5 0 0
................................................................................TTTTATATAAGTTTTTATTAAGACATGT................................................... 28 0 19 0.26 5 5 0 0 0
..............................................................................................TTATTAAGACATGTCTAGCGTCTCAAT...................................... 27 0 19 0.26 5 5 0 0 0
...................................................................TTAAGTGCTCGATTTTTATATAAGTTTT................................................................ 28 0 4 0.25 1 0 1 0 0
...............................................CACCATTCACAAAACGCACTTTAAGT...................................................................................... 26 0 4 0.25 1 1 0 0 0
.....................................................TCACAAAACGCACTTTAATTGCTCGAT............................................................................... 27 1 4 0.25 1 1 0 0 0
..........................................TTTTACACCATTCACAAAACGCACTTTA......................................................................................... 28 0 4 0.25 1 1 0 0 0
...................................................................TTAAGTGCTCGATTTTTATATAAGTTT................................................................. 27 0 4 0.25 1 1 0 0 0
............................................................ACGCACTTTAAGTGCTCGATTTTTAT......................................................................... 26 0 4 0.25 1 1 0 0 0
.............................................TACACCATTCACAAAACGCGCTTTAAGT...................................................................................... 28 1 4 0.25 1 1 0 0 0
....................................................................TAAGTGCTCGATTTTTATATAAGTT.................................................................. 25 0 4 0.25 1 1 0 0 0
.......................................................ACAAAACGCACTTTAAGTGCTCGATT.............................................................................. 26 0 4 0.25 1 1 0 0 0
..........................................................AAACGCACTTTAAGTGCTCGATTTTT........................................................................... 26 0 4 0.25 1 0 0 0 1
...................................................................TTAAGTGCTCGATTTATATATAAG.................................................................... 24 1 4 0.25 1 1 0 0 0
...........................................................AACGCACTTTAAGTGCTCGATTTTTAT......................................................................... 27 0 4 0.25 1 1 0 0 0
.................................................CCATTCACAAAACGCACTTTAAGT...................................................................................... 24 0 4 0.25 1 1 0 0 0
......................................................CACAAAACGCACTTTAAGTGCTCGAT............................................................................... 26 0 4 0.25 1 1 0 0 0
...................................................................TTAAGTGCTCGATTTTTATATAAGTT.................................................................. 26 0 4 0.25 1 1 0 0 0
................................................ACCATTCACAAAACGCACTTTAAGTG..................................................................................... 26 0 4 0.25 1 1 0 0 0
.........................................................AAAACGCACTTTAAGTGCTCGATT.............................................................................. 24 0 4 0.25 1 1 0 0 0
..............................................................GCACTTTAAGTGCTCGATT.............................................................................. 19 0 4 0.25 1 1 0 0 0
................................................................ACTTTAAGTGCTCGATTTTTAT......................................................................... 22 0 4 0.25 1 1 0 0 0
..............................................ACACCATTCACAAAACGCACTTTAA........................................................................................ 25 0 4 0.25 1 1 0 0 0
............................................................ACGCACTTTAAGTGCTCGATTT............................................................................. 22 0 4 0.25 1 1 0 0 0
...............................................................CACTTTAAGTGCTCGATTTTTAT......................................................................... 23 0 4 0.25 1 1 0 0 0
.......AAAGCTCGTATTGAACGTCCTTCTT............................................................................................................................... 25 0 18 0.22 4 4 0 0 0
.............................................................................................................TAGCGTCTCAATTACTACAGCCCGCTCT...................... 28 0 18 0.22 4 0 4 0 0
..........................................TTTTACACCATTCACAAAACGCACT............................................................................................ 25 0 14 0.21 3 3 0 0 0
..............................................................................................................AGCGTCTCAATTACTACAGCCCGC......................... 24 0 19 0.21 4 3 1 0 0
................................................................................................................CGTCTCAATTACTACAGCCCGCTCTTTC................... 28 0 19 0.21 4 0 4 0 0
................................................................................................................................GCCCGCTCTTTCGTAAGCTGT.......... 21 0 19 0.21 4 4 0 0 0
...................................................................................................................CTCAATTACTACAGCCCGCTCTTTCGTA................ 28 0 19 0.21 4 0 4 0 0
..............................................................................................................................CAGCCCGCTCTTTCGTAAGCTGT.......... 23 0 19 0.21 4 4 0 0 0
......................................................................................ATAAGTTTTTATTAAGACATGTCTAGCG............................................. 28 0 19 0.21 4 4 0 0 0
.............................................................................................................TAGCGTCTCAATTACTACAGCCCGC......................... 25 0 19 0.21 4 0 4 0 0
.............................................................................................................................ACAGCCCGCTCTTTCGTAAGCTGTTT........ 26 0 19 0.21 4 4 0 0 0
...................................................................................................................CTCAATTACTACAGCCCGCTCTTTC................... 25 0 19 0.21 4 1 3 0 0
...................................................................................................................CTCAATTACTACAGCCCGCTCTTT.................... 24 0 19 0.21 4 1 3 0 0
....................................................................................ATATAAGTTTTTATTAAGACATGTCT................................................. 26 0 19 0.21 4 3 1 0 0
...........................................................................................................................CTACAGCCCGCTCTTTCGTAAGCTGT.......... 26 0 19 0.21 4 4 0 0 0
.................................................................................................................................CCCGCTCTTTCGTAAGCTGTTTACC..... 25 0 19 0.21 4 4 0 0 0
.......................................................................................................................ATTACTACAGCCCGCTCTTTCGT................. 23 0 20 0.20 4 4 0 0 0
..............................................................AAAATTTAAGTGCTCGATTTTTAT......................................................................... 24 3 5 0.20 1 1 0 0 0
.........................................................................................................................TACTACAGCCCGCTCTTTCGTAAGCT............ 26 0 20 0.20 4 4 0 0 0
...........................................................AAAAAACTTTAAGTGCTCGATTTTTA.......................................................................... 26 3 5 0.20 1 1 0 0 0
....AGTAAAGCTCGTATTGAACGTCCTT.................................................................................................................................. 25 0 16 0.19 3 3 0 0 0
..................TGAACGTCCTTCTTTCAAAGAAGTT.................................................................................................................... 25 0 17 0.18 3 3 0 0 0
................ATTGAACGTCCTTCTTTCAAAGAAGT..................................................................................................................... 26 0 17 0.18 3 3 0 0 0
.....GTAAAGCTCGTATTGAACGTCCT................................................................................................................................... 23 0 17 0.18 3 3 0 0 0
..............................................................................................................AGCGTCTCAATTACTACAGCCCTCTC....................... 26 1 18 0.17 3 0 3 0 0
..................................................................................................................................CCGCTCTTTCGTAAGCTGTTT........ 21 0 19 0.16 3 1 2 0 0
.....................................................................................................................CAATTACTACAGCCCGCTCTTTCG.................. 24 0 19 0.16 3 3 0 0 0
...................................................................................................................CTCAATTACTACAGCCCGGTCTTTCGT................. 27 1 19 0.16 3 3 0 0 0
......................................................................AGTGCTCGATTTTTATATAAGT................................................................... 22 0 19 0.16 3 3 0 0 0
..................................................................................................TAAGACATGTCTAGCGTCTCAAT...................................... 23 0 19 0.16 3 3 0 0 0
........................................................................................AAGTTTTTATTAAGACATGTCTAGC.............................................. 25 0 19 0.16 3 0 3 0 0
..................................................................................................................................CCGCTCTTTCGTAAGCTGTTTACC..... 24 0 19 0.16 3 3 0 0 0
.........................................................................GCTCGATTTTTATATAAGTTT................................................................. 21 0 19 0.16 3 0 3 0 0
...............................................................................................TATTAAGACATGTCTAGCGTCTCAAT...................................... 26 0 19 0.16 3 3 0 0 0
.......................................................................................TAAGTTTTTATTAAGACATGTCTAGCGT............................................ 28 0 19 0.16 3 1 0 2 0
...............................................................................................................GCGTCTCAATTACTACAGCCCGCTCTT..................... 27 0 19 0.16 3 2 1 0 0
............................................................................................................CTAGCGTCTCAATTACTACAGCCCGC......................... 26 0 19 0.16 3 0 3 0 0
.................................................................................................................GTCTCAATTACTACAGCCCGCTCTTTCG.................. 28 0 19 0.16 3 3 0 0 0
............................................................................................................CTAGCGTCTCAATTACTACAGCCCGCT........................ 27 0 19 0.16 3 2 1 0 0
................................................................................................................................GCCCGCTCTTTCGTAAGCTGTTTACCT.... 27 0 19 0.16 3 2 1 0 0
................................TCAAAGGAGTTTTTACACCATTCACAAA................................................................................................... 28 1 13 0.15 2 2 0 0 0
................................TCAAAGAAGTTTTTACACCATTCACAA.................................................................................................... 27 0 13 0.15 2 2 0 0 0
...........................ATCTTTCAAAGAAGTTTTTACACCATT......................................................................................................... 27 1 13 0.15 2 2 0 0 0
................................TCAAAGAAGTTTTTACACCATTCAC...................................................................................................... 25 0 13 0.15 2 2 0 0 0
.................................CAAAGAAGTTTTTACACCATTCACAA.................................................................................................... 26 0 13 0.15 2 2 0 0 0
...............................................................................................................GCGTCTCAATTACTACAGCCC........................... 21 0 20 0.15 3 0 3 0 0
.................................................................................................................GTCTCAATTACTACAGCCCGCTCTT..................... 25 0 20 0.15 3 1 2 0 0
...............................................................................................................................AGCCCGCTCTTTCGTAAGCTG........... 21 0 20 0.15 3 3 0 0 0
...........................................TTTACACCATTCACAAAACGCACT............................................................................................ 24 0 14 0.14 2 2 0 0 0
.....GTAAAGCTCGTATTGAACGTCCTT.................................................................................................................................. 24 0 17 0.12 2 2 0 0 0
..................TGAACGTCCTTCTTTCAAAGAAGTTTTT................................................................................................................. 28 0 17 0.12 2 2 0 0 0
.....GTAAAGCTCGTATTGAACGT...................................................................................................................................... 20 0 17 0.12 2 2 0 0 0
...................GAACGTCCTTCTTTCAAAGAAGTTTTT................................................................................................................. 27 0 17 0.12 2 2 0 0 0
..................TGAACGTCCTTCTTTCAAAGAAGTTTT.................................................................................................................. 27 0 17 0.12 2 2 0 0 0
.............................................................................................................TAGCGTCTCAATTACTACAGCCCGCTC....................... 27 0 18 0.11 2 1 1 0 0
..............................................................................................................AGCGTCTCGATTACTACAGCCCGCTCT...................... 27 1 18 0.11 2 1 1 0 0
............................................................................................................CTAGCGTCTCAATTACTACAGCCCGCTCT...................... 29 0 18 0.11 2 2 0 0 0
........................................................................................AAGTTTTTATTAAGACATGTCTAGCG............................................. 26 0 19 0.11 2 2 0 0 0
................................................................................................ATTAAGACATGTCTAGCGTCTCAAT...................................... 25 0 19 0.11 2 2 0 0 0
.............................................................................................................AAGCGTCTCAATTACTACAGCCCGCTCTT..................... 29 1 19 0.11 2 0 2 0 0
...................................................................................................................CTCAATTACTACAGCCCGCTCTTTCCT................. 27 1 19 0.11 2 0 2 0 0
...................................................................................................................................CGCTCTTTCGTAAGCTGTTTACCT.... 24 0 19 0.11 2 2 0 0 0
...................................................................................................................CTCGATTACTACAGCCCGCTCTTTCGT................. 27 1 19 0.11 2 2 0 0 0
.................................................................................................................................CCCGCTCTTTCGTAAGCGGTTTACCT.... 26 1 19 0.11 2 2 0 0 0
..........................................................................................................GTCTAGCGTCTCAATTACTACAGCCC........................... 26 0 19 0.11 2 2 0 0 0
................................................................................................................................GCCCGCTCTTTCTTAAGCTGTTTACCT.... 27 1 19 0.11 2 0 2 0 0
.................................................................................TTTATATAAGTTTTTATTAAGACATGT................................................... 27 0 19 0.11 2 2 0 0 0
............................................................................................................................TACAGCCCGCTCTTTCGTAAGCTGT.......... 25 0 19 0.11 2 2 0 0 0
..................................................................................................................TCTCAATTACTACAGCCCGCTCTTTCGT................. 28 0 19 0.11 2 2 0 0 0
...................................................................................................................CTCCATTACTACAGCCCGCTCTTTCGT................. 27 1 19 0.11 2 0 2 0 0
.......................................................................................TAAGTTTTTATTAAGACATGTCTAGCG............................................. 27 0 19 0.11 2 2 0 0 0
.........................................................................................................................TACTACAGCCCGCTCTTTCGTAAGCTGT.......... 28 0 19 0.11 2 2 0 0 0
.............................................................................................................TAGCGTCTCAATTACTACAGC............................. 21 0 19 0.11 2 2 0 0 0
.....................................................................................................GACATGTCTAGCGTCTCAATTACTACA............................... 27 0 19 0.11 2 2 0 0 0
.........................................................................................AGTTTTTATTAAGACATGTCTAGCGT............................................ 26 0 19 0.11 2 1 0 1 0
.......................................................................................AAAGTTTTTATTAAGACATGTCTAGCGT............................................ 28 1 19 0.11 2 2 0 0 0
...........................................................................................................TCTAGCGTCTCAATTACTACAGCCCGC......................... 27 0 19 0.11 2 0 2 0 0
..............................................................................................................AGCGTCTCAATTACTACAGC............................. 20 0 19 0.11 2 0 2 0 0
.....................................................................................................................CAATTACTACAGCCCGCTCTTTCGTAA............... 27 0 19 0.11 2 2 0 0 0
..................................................................................................TAAGACATGTCTAGCGTCTCAATTAC................................... 26 0 19 0.11 2 2 0 0 0
...................................................................................................................CTCAATTACTACAGCCCGCTCTTTCGTAA............... 29 0 19 0.11 2 2 0 0 0
...................................................................................................................CTCAATTACTACAGCCCGCTC....................... 21 0 20 0.10 2 0 2 0 0
...................................................................................................................CTCAATTACTACAGCCCGCTCTT..................... 23 0 20 0.10 2 2 0 0 0
...................................................................................................................CTCAATTACTACAGCCCGCT........................ 20 0 20 0.10 2 0 2 0 0
.................................................................................................................GTCTCAATTACTACAGCCCGCTCT...................... 24 0 20 0.10 2 2 0 0 0
................................................................................................................CGTCTCAATTACTACAGCCCGCT........................ 23 0 20 0.10 2 1 1 0 0
...............................................................................................................GCGTCTCAATTACTACAGCCCGCT........................ 24 0 20 0.10 2 2 0 0 0
.............................CTTTCAAAGAAGTTTTTACACCATT......................................................................................................... 25 0 13 0.08 1 1 0 0 0
...............................TTCAAAGAAGTTTTTACACCATTC........................................................................................................ 24 0 13 0.08 1 1 0 0 0
............................TCTTTCAAAGAAGTTTTTACACCAT.......................................................................................................... 25 0 13 0.08 1 1 0 0 0
...............................TTCAAAGAAGTTTTTACACCCTTCACAAA................................................................................................... 29 1 13 0.08 1 1 0 0 0
...............................TTCAAAGAAGTTTTTACACCATTCAC...................................................................................................... 26 0 13 0.08 1 1 0 0 0
.........................CCTTCTTTCAAAGAAGTTTTTACACCAT.......................................................................................................... 28 0 13 0.08 1 1 0 0 0
................................TCAAAGAAGTTTTTACACCATTCACTAA................................................................................................... 28 1 13 0.08 1 0 0 1 0
............................TCTTTCAAAGAAGTTTTTACAC............................................................................................................. 22 0 13 0.08 1 1 0 0 0
.........................CCTTCTTTCAAAGAAGTTTTTACACCATT......................................................................................................... 29 0 13 0.08 1 1 0 0 0
...............................ATCAAAGAAGTTTTTACACCATTCACAAA................................................................................................... 29 1 13 0.08 1 1 0 0 0
............................TCTTTCAAAGAAGTTTTTACACCATTC........................................................................................................ 27 0 13 0.08 1 1 0 0 0
.................................CAAAGAAGTTTTTACACCATTCACAAAA.................................................................................................. 28 0 13 0.08 1 1 0 0 0
...........................TTCTTTCAAAGAAGTTTTTACACCAT.......................................................................................................... 26 0 13 0.08 1 0 0 0 1
...............................TTCAAAGAAGTTTTTACACCGTTCACAAA................................................................................................... 29 1 13 0.08 1 1 0 0 0
................................TCAAAGAAGTTTTTACACCCTTCACAAA................................................................................................... 28 1 13 0.08 1 1 0 0 0
...............................TTCAAAGAAGTTTTTACACCATTCA....................................................................................................... 25 0 13 0.08 1 1 0 0 0
............................TCTTTCAAAGAAGTTTTTTCACCATTC........................................................................................................ 27 1 13 0.08 1 1 0 0 0
...................................................................AAAAGTGCTCGATTTTTAT......................................................................... 19 2 14 0.07 1 1 0 0 0
...................................AAGAAGTTTTTACACCATTCACAA.................................................................................................... 24 0 14 0.07 1 1 0 0 0
...........................................ATTACACCATTCACAAAACGCACT............................................................................................ 24 1 14 0.07 1 1 0 0 0
..........................................TTTTACACCATTCACAAAACGCACTT........................................................................................... 26 0 14 0.07 1 1 0 0 0
..........................................TTTTACACCATTCACGAAACGCACT............................................................................................ 25 1 14 0.07 1 1 0 0 0
..................................AAAGAAGTTTTTACACCATTCACAA.................................................................................................... 25 0 14 0.07 1 1 0 0 0
.....................................GAAGTTTTTACACCATTCACAAA................................................................................................... 23 0 14 0.07 1 1 0 0 0
............................................TTACACCATTCACAAAACGCAC............................................................................................. 22 0 14 0.07 1 1 0 0 0
..........................................TTTTACACCATTCACAAAACGCAC............................................................................................. 24 0 14 0.07 1 1 0 0 0
................................TCAAAGAAGTTTTTAAACCATTCA....................................................................................................... 24 1 14 0.07 1 1 0 0 0
....................................AGAAGTTTTTACACCATTCACAAAG.................................................................................................. 25 1 14 0.07 1 1 0 0 0
...........................................TTTACACCATTCACAAAACCCACT............................................................................................ 24 1 14 0.07 1 1 0 0 0
.CCTAGTAAAGCTCGTATTGAACGTCCTT.................................................................................................................................. 28 0 16 0.06 1 1 0 0 0
...AAGTAAAGCTCGTATTGAACGTCCT................................................................................................................................... 25 1 16 0.06 1 1 0 0 0
AACTAGTAAAGCTCGTATTGAACGT...................................................................................................................................... 25 1 16 0.06 1 1 0 0 0
CCCTAGTAAAGCTCGTATTGAACGT...................................................................................................................................... 25 1 16 0.06 1 1 0 0 0
.CCTAGTAAAGCTCGTATTGAACGTC..................................................................................................................................... 25 0 16 0.06 1 1 0 0 0
..CTAGTAAAGCTCGTATTGAACGTCCTT.................................................................................................................................. 27 0 16 0.06 1 1 0 0 0
...TAGTAAAGCTCGTATTGAACGTCCTG.................................................................................................................................. 26 1 16 0.06 1 1 0 0 0
...TAGTAAAGCTCGTATTGAAC........................................................................................................................................ 20 0 16 0.06 1 0 0 1 0
..CTAGTAAAGCTCGTATTGAACGTCC.................................................................................................................................... 25 0 16 0.06 1 1 0 0 0
...TAGTAAAGCTCGTATTAAACGTCCT................................................................................................................................... 25 1 16 0.06 1 1 0 0 0
..CTAGTAAAGCTCGTATTGAGCGTCCTTG................................................................................................................................. 28 2 16 0.06 1 1 0 0 0
....AGTAAAGCTCGTATTGAACGTCCT................................................................................................................................... 24 0 16 0.06 1 1 0 0 0
.....................ACGTCCTTCTTTCAAAGATGTTTTTAC............................................................................................................... 27 1 16 0.06 1 1 0 0 0
.CCTAGTAAAGCTCGTTTTGAACGT...................................................................................................................................... 24 1 16 0.06 1 1 0 0 0
.........................CCTTCTTTCAAAGAAGTTTTTACA.............................................................................................................. 24 0 16 0.06 1 1 0 0 0
..TTAGTAAAGCTCGTGTTGAACGT...................................................................................................................................... 23 2 16 0.06 1 1 0 0 0
.CCTAGTAAAGCTCGTGTTGAACGT...................................................................................................................................... 24 1 16 0.06 1 1 0 0 0
...TAGTAAAGCTCGTATTGAACGTCCT................................................................................................................................... 25 0 16 0.06 1 1 0 0 0
.CCTAGTAAAGCTCGTATTGAACG....................................................................................................................................... 23 0 16 0.06 1 1 0 0 0
.................TTGAACGTCCTTCTTTCAAAGAAGTTT................................................................................................................... 27 0 17 0.06 1 1 0 0 0
...................GAACGTCCTTCTTTCAAAGAAGTTT................................................................................................................... 25 0 17 0.06 1 1 0 0 0
................ATTGAACGTCCTTCTTTCAAAGAAGTT.................................................................................................................... 27 0 17 0.06 1 1 0 0 0
..................TGAACGTCCTTCTTTCAAATAAGTTTTT................................................................................................................. 28 1 17 0.06 1 1 0 0 0
.....GTAAAGCTCGTATTGAACGTCCTTCT................................................................................................................................ 26 0 17 0.06 1 1 0 0 0
..................TGAACGTCCTTCTTTCAAAGAAG...................................................................................................................... 23 0 17 0.06 1 1 0 0 0
....................AACGTCCTTCTTTCAAAGAAGTTTTT................................................................................................................. 26 0 17 0.06 1 1 0 0 0
.......................GTCCTTCTTTCAAAGAAGTTTT.................................................................................................................. 22 0 17 0.06 1 1 0 0 0
..................TGAACGTCCTTCTTTCAAAGAAGTTT................................................................................................................... 26 0 17 0.06 1 1 0 0 0
.....GTAAAGCTCGTATTGAACGTCC.................................................................................................................................... 22 0 17 0.06 1 1 0 0 0
..............................................................................................................AGCGTCTCAATTACTACAGCCCTCTCTT..................... 28 1 18 0.06 1 0 1 0 0
..............................................................................................................AGCGTCTCAATTACTACAGCCGGCTCTT..................... 28 1 18 0.06 1 0 1 0 0
.............................................................................................................TAGCGTCTCAATTACTACGGCCCGCTCTT..................... 29 1 18 0.06 1 0 1 0 0
............TCGTATTGAACGTCCTTCTTT.............................................................................................................................. 21 0 18 0.06 1 1 0 0 0
........AAGCTCGTATTGAACGTCCTTCTTT.............................................................................................................................. 25 0 18 0.06 1 1 0 0 0
..............................................................................................................AGCGTCTCAATTACTACAGCCCGCTCCT..................... 28 1 18 0.06 1 0 1 0 0
............................................................................................................CTAGCGTCTCAATTACTACAGCCCGCTC....................... 28 0 18 0.06 1 1 0 0 0
..............................................................................................................AGCGTCTCAATTACTACCGCCCGCTCTT..................... 28 1 18 0.06 1 0 1 0 0
..............................................................................................................AGCGTCTCAATTACTACAGCCCGTTCTT..................... 28 1 18 0.06 1 0 1 0 0
......AAAAGCTCGTATTGAACGTCCTTCT................................................................................................................................ 25 1 18 0.06 1 1 0 0 0
..............................................................................................................AACGTCTCAATTACTATAGCCCGCTCTTT.................... 29 2 18 0.06 1 0 1 0 0
.........AGCTCGTATTGAACGTCCTT.................................................................................................................................. 20 0 18 0.06 1 1 0 0 0
..............................................................................................................AGCGTCCCAATTACTACAGCCCGCTCTT..................... 28 1 18 0.06 1 0 1 0 0
......TAAAGCTCGTATTGAACGTCCTTCTCA.............................................................................................................................. 27 2 18 0.06 1 1 0 0 0
......AAAAGCTCGTATTGAACGTCCTTCTTT.............................................................................................................................. 27 1 18 0.06 1 1 0 0 0
.......AAAGCTCGTATTGAACGTCCTA.................................................................................................................................. 22 1 18 0.06 1 1 0 0 0
..........GCTCGTATTGAACGTCCTTCTTTC............................................................................................................................. 24 0 18 0.06 1 1 0 0 0
...................................................................................................................CTCAATTACTACAGCCCGCTCTTTCGTC................ 28 1 19 0.05 1 1 0 0 0
.....................................................................................TATAAGTTTTTATTAAGACATGTCT................................................. 25 0 19 0.05 1 1 0 0 0
.................................................................................................................GTCTCAATTACTACAGCCCGCTCTTTCGT................. 29 0 19 0.05 1 1 0 0 0
.............................................................................................................TAGCGTCTCAATTACTACA............................... 19 0 19 0.05 1 1 0 0 0
................................................................................TTTTATATAAGTTTTTATTAAGACATGTC.................................................. 29 0 19 0.05 1 1 0 0 0
.................................................................................................TTAAGACATGTCTAGCGTCTCAATTAC................................... 27 0 19 0.05 1 1 0 0 0
...................................................................................................................CTCAATTACTACAGCCCGCTCTTTCGG................. 27 1 19 0.05 1 1 0 0 0
...................................................................................................................CTCAATTACTACAGCCCGCTCTTTCAC................. 27 2 19 0.05 1 1 0 0 0
...................................................................................................................CTCAATTACTACAGCCCGCCCTTTCGT................. 27 1 19 0.05 1 1 0 0 0
...................................................................................................AAGACATGTCTAGCGTCTCATTTACTACA............................... 29 1 19 0.05 1 1 0 0 0
......................................................................................ATAAGTTTTTATTAAGACATCTCTAGCGT............................................ 29 1 19 0.05 1 1 0 0 0
..................................................................................................TAAGACATGTCTAGCGTCTCAATTA.................................... 25 0 19 0.05 1 0 1 0 0
...................................................................................................................CTCAACTACTACAGCCCGCTCTTTCGT................. 27 1 19 0.05 1 1 0 0 0
...............................................................................................................................AGCCCGCTCTTTCGTAAGCTGTTTACCT.... 28 0 19 0.05 1 1 0 0 0
....................................................................................................................TCAATTACTACAGCCCGATCTTTCGT................. 26 1 19 0.05 1 1 0 0 0
....................................................................................................................ACAATTACTACAGCCCGCTCTTTCGT................. 26 1 19 0.05 1 1 0 0 0
.................................................................................................................................CCCGCTCTTTCGTAAGCTGTTT........ 22 0 19 0.05 1 1 0 0 0
..................................................................................................................TCTCAATTACTAGAGCCCGCTCTTT.................... 25 1 19 0.05 1 0 1 0 0
.....................................................................................AATAAGTTTTTATTAAGACATGTCT................................................. 25 1 19 0.05 1 1 0 0 0
..................................................................................................AAAGACATGTCTAGCGTCTCAATTACT.................................. 27 1 19 0.05 1 1 0 0 0
.........................................................................................................CGTCTAGCGTCTCAATTACTACAGCCC........................... 27 1 19 0.05 1 0 1 0 0
..................................................................................................TAAGACATGTCTAGCGTCTCAATT..................................... 24 0 19 0.05 1 1 0 0 0
......................................................................................ATAAGTTTTTATTAAGGCATGTCTAGCGT............................................ 29 1 19 0.05 1 0 1 0 0
.................................................................................................ATAAGACATGTCTAGCGTCTCAATTAC................................... 27 1 19 0.05 1 1 0 0 0
........................................................................................AAGTTTTTATTAAGACATGTCTAG............................................... 24 0 19 0.05 1 1 0 0 0
.............................................................................................................TAGCGTCTCAATTACTGCAGCCCGC......................... 25 1 19 0.05 1 0 1 0 0
...................................................................................................................CTCAATTACTACAGCCTGCTCTTTCGT................. 27 1 19 0.05 1 0 1 0 0
.......................................................................................TAAGTTTTTATTAAGACATGTCT................................................. 23 0 19 0.05 1 1 0 0 0
.............................................................................................................................AAAGCCCGCTCTTTCGTAAGCTGTTT........ 26 1 19 0.05 1 1 0 0 0
.................................................................................................................AACTCAATTACTACAGCCCGCTCTTTCGT................. 29 2 19 0.05 1 1 0 0 0
...................................................................................................................CTCAATTACTACAGCCCCCTCTTTCGT................. 27 1 19 0.05 1 1 0 0 0
.....................................................................................................GACATGTCTAGCGTCTCAATTACTACAG.............................. 28 0 19 0.05 1 1 0 0 0
.............................................................................................TTTATTAAGACATGTCTAGCGTCTCAA....................................... 27 0 19 0.05 1 1 0 0 0
...............................................................................................................GCGTCTCAATTACTACAGACCGCTCTT..................... 27 1 19 0.05 1 1 0 0 0
..................................................................................................................................CCGCTCTTTCGTAAGCTGTT......... 20 0 19 0.05 1 0 0 0 1
...................................................................................................................CTCAATTACTACAGCCCGCACTTTCGTC................ 28 2 19 0.05 1 1 0 0 0
......................................................................................................ACATGTCTAGCGTCTCAATTACTACA............................... 26 0 19 0.05 1 1 0 0 0
.................................................................................................................AGCTCCATTACTACAGCCCGCTCTTTCGT................. 29 3 19 0.05 1 1 0 0 0
...................................................................................................................CTCCATTACTACAGCCCGCTCTTTCCT................. 27 2 19 0.05 1 0 1 0 0
....................................................................................................................ACAATTACTACAGCCCGATCTTTCGT................. 26 2 19 0.05 1 1 0 0 0
....................................................................................................................TCAATTACTACAGCCCGCTCTTTCGTAA............... 28 0 19 0.05 1 1 0 0 0
..................................................................................TTATATAAGTTTTTATTGAGACATGT................................................... 26 1 19 0.05 1 1 0 0 0
.........................................................................GCTCGATTTTTATATAAGTT.................................................................. 20 0 19 0.05 1 1 0 0 0
.........................................................................................AGTTTTTATTAAGACAAGTCTAGCG............................................. 25 1 19 0.05 1 1 0 0 0
.............................................................................................TTTATTAAGACATGTCTAGCGTCTC......................................... 25 0 19 0.05 1 1 0 0 0
...................................................................................................................CTCAATTACTACAGCCCGCTCTTTCT.................. 26 1 19 0.05 1 0 1 0 0
...................................................................................................................CTCAATTACTACAGCCCGATCTTTCGT................. 27 1 19 0.05 1 1 0 0 0
......................................................................................ATAAGTTTTTATTAAGACATGACTAGCG............................................. 28 1 19 0.05 1 1 0 0 0
........................................................................................AAGTTTTTATTAAGACATGTCT................................................. 22 0 19 0.05 1 0 1 0 0
.......................................................................................................CATGTCTAGCGTCTCAATTACT.................................. 22 0 19 0.05 1 1 0 0 0
..............................................................................................................................CAGCCCGCTCTTTCCTAAGCTGT.......... 23 1 19 0.05 1 1 0 0 0
..................................................................................................................................CCGCTCTTTCGTAAGCTGTTTACCT.... 25 0 19 0.05 1 1 0 0 0
..................................................................................................................................TCGCTCTTTCGTAAGCTGTTT........ 21 1 19 0.05 1 1 0 0 0
..........................................................................................GTTTTTATTAAGACATGTCTAGCGT............................................ 25 0 19 0.05 1 1 0 0 0
...................................................................................................................CTCAATTACTACAGCCCTCTCTTTCGT................. 27 1 19 0.05 1 1 0 0 0
..............................................................................................TTATTAAGACATGTCTAGCGTCTCAATT..................................... 28 0 19 0.05 1 1 0 0 0
.....................................................................................................GACATGTCTAGCGTCTCAA....................................... 19 0 19 0.05 1 1 0 0 0
............................................................................................TTTTATTAAGACATGTATAGCGTCT.......................................... 25 1 19 0.05 1 1 0 0 0
.................................................................................................TTAAGACATGTCTAGCGTCTCAAT...................................... 24 0 19 0.05 1 1 0 0 0
..................................................................................................TAAGACATGTCTAGCGTCTCAATTACTA................................. 28 0 19 0.05 1 0 1 0 0
............................................................................................TTTTATTAAGACATGTCTAGCG............................................. 22 0 19 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_2650:2313-2471 - dpe_1290 TGGATCATTTCGAGCATAACTTGCAGGAAG-----------AAAGTT-TCTTCAAAAATGT--GGTAAGT-----GTTTTG---------------CGTG---AAATTC----ACGAGC-TAAAAATATATTCAA-AAATAATTCTGTACAGAT----------------CGCAGAGTTAATGATGTCGGGCGAGAAAGCATTCGACAAATGGATTCG
dp5 XR_group6:4283721-4283879 + TTACTC-----------TAGCCATCCGTAGT-------AAGTATTATTTTCAA----------ATTAATATGT--ATATTGTAATATAATAAACA--------T-GATT----ATTTGTTTACAGCGGGATTTAA-GGAA------------AGATTTTCGTTAGAAGACGCCGATTTCGACCGAATCACGCAAAAATTTTTCCAGTACGCCC---AG
droVir3 scaffold_13036:589856-589998 - TTAAAC-----------CAACCACATAAGT-TTGTAGCCTGTAT-------------------ATGCGCAA-----------------TTT---AAT-AT---TACTTT----G-TTGTCTACAGGTGCATTTAGAAGAG------------AAGTTTGAGCTGGAAGACGCCGATTTTGACCGCGTAACACAAAAATATTTTGAGTACGCGC---AG
droAna3 scaffold_13417:2792774-2792924 + TAATGT-----------TAGGAATAAGAAGT-------AAG----T---TTAA----------AAAAATATGT--ATATTTTTAAATATTTAA------T----TAGAC----CTTTTTTTCCAGGTGCTTTTCT-ACAA------------ACATTTGGGTTGAAAGACGAAGACTTTGACCGAGTAGCGAAGCGGTTCTCTCAGTATGCCC---AG
droKik1 scf7180000302446:16480-16633 + TAACGT-----------CAGCCGTCAGAGG-----------TATATT-TTTCTTATATTTTGTATTAATTA--TTTAATTA---------------T-TA---TAATTT----ATATATTTACAGCCGCTTTTAT-GAAG------------AAATTCCCGTTGGAAGACGCCGACTTCGACAAAGTTACGCAAAAATACATCCAATACGCGC---AG
droEle1 scf7180000487534:838-966 + G-------------------CATTCCGTCGT-------AAGATTATT-TTTATAAAAACGTATATAAGCCA-------------------------T-AT---TAATTTGTTTA-TTT----------------T-ATAC------------ATCTTTGCCCTAGAAGACGACGGTCTCAACAGGGTACCACAAAATTTATTGCAATACGCCC---AG
droRho1 scf7180000760936:4173-4333 - TTACTC-----------TAGCAATCCGTAGT-------AAGTATTTT-TTTAT----------AAGAATTA--TTGTATTACAATAT-----ACAAT-ATTACAAAATC----GTTTTTTTACAGCGGGATTTAA-GTAA------------ATATTTTCCTTAGAAGATTCAGATTTCGACAGGATAACCCAAAAGTTTTTCCAGTACGCCC---AG
droTak1 scf7180000414610:2554-2713 + TTACTC-----------TAGCAATCCGTTGT-------AAGTATATT-TT-AT----------ACGAATAA--TTATATTACAATGC-----ACAAT-ATTACAAAATC----GTTTTTTTACAGCGGGATTTAA-AGAA------------AGATTTTTCCTGGAAGAAGCGGATTTCGACAGGATAACCCAGAAGTTTTTCCAGTACGCCC---AG
droYak3 v2_chr2L_random_001:157372-157520 + TAACGT-----------CATCCGTCAGAGG-----------TATATT-TTTTAT-----TATTAATAATTA--TTTACTTA---------------T-AA---TAATTT----GTATTCTTACAGTCTCTTTCAA-GAAT------------AAATTTGCATTGGAGGACTTCGATTTCGACCGCATTACCCAAAAATATTTTCAATATGCGC---GT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
TGGATCATTTCGAGCATAACTTGCAGGAAG-----------AAAGTT-TCTTCAAAAATGT--GGTAAGT-----GTTTTG---------------CGTG---AAATTC----ACGAGC-TAAAAATATATTCAA-AAATAATTCTGTACAGAT----------------CGCAGAGTTAATGATGTCGGGCGAGAAAGCATTCGACAAATGGATTCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................GTAAGT-----GTTTTG---------------CGTG---AAATTC----A........................................................................................................2340.753000003
...............................................................................................................................................................................................CGAGAAAGCATTCGACAAATGGAT...24190.377060001
....................................................................................................................................................ACAGAT----------------CGCAGAGTTAATGATGTC..............................24190.265010004
.................................................................TAAGT-----GTTTTG---------------CGTG---AAATTC----.........................................................................................................2140.251010000
................................................................GTAAGT-----GTTTTG---------------CGTG---AAATTC----ACGA.....................................................................................................2640.251000001
...........................................................................................................................................TAATTCTGTACAGAT----------------CGCAGAGT........................................23190.214040000
.................................................................................................................................................................................TTAATGATGTCGGGCGAGAA.....................20200.204301000
........................................................................................................................................AAATAATTCTGTACAGAT----------------CGC.............................................21190.163300000
.............................................................................................................................................................................AGAGTTAATGATGTCGGG...........................18200.153110001
...............................................................................................................................................................................................CGAGAAAGCATTCGACAAATGGA....23190.112020000
............................................GTT-TCTTCAAAAATGT--GGTA.......................................................................................................................................................20130.081010000
...........................................................GT--GGTAAGT-----GTTTTG---------------CGTG---A..................................................................................................................20140.071010000
......................................................AAAATGT--GGTAAGT-----GTTTTG---------------C.........................................................................................................................21150.071010000
TGGATCATTTCGAGCATAACTTGCAGG...............................................................................................................................................................................................27160.061010000
.....................TGCAGGAAG-----------AAAGTT-TCTTCAAAAA................................................................................................................................................................25170.061000010
................TAACTTGCAGGAAG-----------AAAGTT-TCTTCAAC..................................................................................................................................................................28170.061000001
...............................................................................................................................................................................................CGAGAAAGCATTCGACAAATGGATT..25190.051010000
.............................................................................................................................................ATTCTGTACAGAT----------------CGCAGAGT........................................21190.051010000
...........................................................................................................................................................................................CGGGCGAGAAAGCATTCGACAAAT.......24190.051010000
.........................................................................................................................................................T----------------CGCAGAGTTAATGATGTCGG............................21190.051010000
................................................................................................................................................................................................GAGAAAGCATTCGACAAATGGAT...23190.051010000
....................................................................................................................................................ACAGAT----------------CGCAGAGTTAATGATGT...............................23190.051010000
...............................................................................................................................................................................................CGAGAAAGCATTCGACAAATGT.....22190.051010000
..........................................................................................................................................................................CGCAGAGTTAATGATGTCGGGCGAGAA.....................27190.051010000
...............................................................................................................................................TCTGTACAGAT----------------CGCAGAGTTAATGAT.................................26190.051010000
.................................................................................................................................................TGTACAGAT----------------CGCAGAGTTAATGATGT...............................26190.051010000
................................................................................................................................................................................................GAGAAAGCATTCGACAAATGGATTC.25190.051010000
....................................................................................................................................................ACAGAT----------------CGCAGAGTTAATG...................................19190.051010000
.........................................................................................................................................................T----------------CGCAGAGTTAATGATGTCGGG...........................22190.051010000
..............................................................................................................................................................................GAGTTAATGATGTCGGGCGAGAAAGC..................26190.051000001
....................................................................................................................................CAA-AAATAATTCTGTACAGAT----------------................................................21190.051010000
....................................................................................................................................................ACAGAT----------------CGCAGAGTTAATGATGTCGGG...........................27190.051000100
...................................................................................................................................................TACAGAT----------------CGCAGAGTTAATGATGT...............................24190.051000001
..........................................................................................................................................................................CGCAGAGTTAATGATGTCGGG...........................21200.051010000
.....................................................................................................................................................................................TGATGTCGGGCGAGAAAGCATTCGA............25200.051100000
...........................................................................................................................................................................GCAGAGTTAATGATGTCGGGCG.........................22200.051010000
.....................................................................................................................................................................................TGATGTCGGGCGAGAAAGCT.................20200.051010000
...............................................................................................................................................TCTGTACAGAT----------------CGCAGAGT........................................19200.051100000
.............................................................................................................................................................................AGAGTTAATGATGTCGGGCGT........................21200.051100000
...........................................................................................................TC----ACGAGC-TAAAAATATATTC.....................................................................................21200.051010000
..........................................................................................................................................................................CGCAGAGTTAATGATGTCGGGCG.........................23200.051010000
.....................................................................................................................................................................................TGATGTCGGGCGAGAAAGCATTCGG............25200.051100000
...........................................................................................................................................TAATTCTGTACAGAT----------------CGCAG...........................................20200.051010000
...........................................................................................................................................................................GCAGAGTTAATGATGTCGGGC..........................21200.051010000
dp5
TTACTC-----------TAGCCATCCGTAGT-------AAGTATTATTTTCAA----------ATTAATATGT--ATATTGTAATATAATAAACA--------T-GATT----ATTTGTTTACAGCGGGATTTAA-GGAA------------AGATTTTCGTTAGAAGACGCCGATTTCGACCGAATCACGCAAAAATTTTTCCAGTACGCCC---AGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................GT-------AAGTATTATTTTCAA----------ATTAATA....................................................................................................................................................2444.001601200000400
....................................................................................................................................TAA-GGAA------------AGATTTTCGTTAGAAGACGC..............................................2733.33100200000080
..........................................................................................................................................................ATTTTCGTTAGAAGACGCCGATT.........................................2332.3370700000000
.............................................................................................................................CGGGATTTAA-GGAA------------AGATTTTCGT........................................................2432.3370000000520
...........................TAGT-------AAGTATTATTTTCAA----------ATTAATA....................................................................................................................................................2641.7570700000000
..........................................................................................................................................................ATTTTCGTTAGAAGACGCCGATTT........................................2431.6750400000010
..................................................................................................................................................................TAGAAGACGCCGATTTCGACCGAAT...............................2531.0030200010000
..........................................................................................................................................................ATTTTCGTTAGAAGACGCCGAT..........................................2231.0030300000000
...............................................................................................................................................................................TTTCGACCGAATCACGCAAAAATTT..................2521.0020000000200
.............................................................................................................................................................TTCGTTAGAAGACGCCGATTTCGACC...................................2631.0030210000000
..........................................................................................................................................................ATTTTCGTTAGAAGACGCCGA...........................................2131.0030300000000
........................................................................................................................TACAGCGGGATTTAA-GGAA------------AGATTT............................................................2570.7150300000200
...........................................................................................................................................................TTTTCGTTAGAAGACGCCGATT.........................................2230.6720200000000
..........................................................................................................................................................ATTTTCGTTAGAAGACGCCGATTTCGACC...................................2930.6720200000000
..........................................................................................................................................................................................TCACGCAAAAATTTTTCCAGTACGCC......2630.6720200000000
.............................GT-------AAGTATTATTTTCAA----------ATTAATATG..................................................................................................................................................2640.5020100000100
..............................................................................................................................................................................ATTTCGACCGAATCACGCAAAAATT...................2520.5010100000000
..................................................................................................................................................................TAGAAGACGCCGATTTCGACCGA.................................2350.4020200000000
..................................................................................................................................................................TAGAAGACGCCGATTTCGACCG..................................2250.4020200000000
..................................................................................................................................TTTAA-GGAA------------AGATTTTCGTTAGAAG..................................................2530.3310100000000
..........................................................................................................................................................ATTTTCGTTAGAAGACGCCGATTTCGAC....................................2830.3310100000000
.....................................................................................................................................AA-GGAA------------AGATTTTCGTTAGAAGACGCC.............................................2730.3310100000000
...................................................................................................................................................................AGAAGACGCCGATTTCGACCGAAT...............................2430.3310000000010
...........................................................................................................................................................................................CACGCAAAAATTTTTCCAGTACGCC......2530.3310100000000
...............................................................................................................................................................CGTTAGAAGACGCCGATTTCGACCGA.................................2630.3310100000000
...........................................................................................................................................................TTTTCGTTAGAAGACGCCGATTTCGA.....................................2630.3310100000000
...............................................................................................................................................................CGTTAGAAGACGCCGATTTCGACCG..................................2530.3310100000000
...........................................................................................................................................................................................CACGCAAAAATTTTTCCAGTACGC.......2430.3310100000000
..............................................................................................................................................................TCGTTAGAAGACGCCGATTTCGACC...................................2530.3310000000001
.............................................................................................................................................................TTCGTTAGAAGACGCCGATTTCGAC....................................2530.3310100000000
............................................................................................................................................................TTTCGTTAGAAGACGCCGATT.........................................2130.3310100000000
...........................................................................................................................................................TTTTCGTTAGAAGACGCCGTC..........................................2130.3310100000000
.............................................................................................................................CGGGATTTAA-GGAA------------AGATTTTCGTA.......................................................2530.3310000000100
.............................................................................................................................CGGGATTTAA-GGAA------------AGATTTTCGTTA......................................................2630.3310100000000
.............................................................................................................................CGGGATTTAA-GGAA------------AGATTTTCGTT.......................................................2530.3310100000000
..........................................................................................................................................................ATTTTCGTTAGAAGACGCCGATTA........................................2430.3310100000000
..........................................................................................................................................................ATTTTCGTTAGAAGACGCCGATTTCGA.....................................2730.3310100000000
......................................................................................................................................................................AGACGCCGATTTCGACCGAAT...............................2130.3310100000000
....................................................................................................................................TAA-GGAA------------AGATTTTCGTTAGAAG..................................................2330.3310100000000
..................................................................................................................................................................TAGAAGACGCCGATTTCGACCGAATCA.............................2730.3310100000000
....................................................................................................................................TAA-GGAA------------AGATTTTCGTTAGAAGACGCC.............................................2830.3310010000000
..............................T-------AAGTATTATTTTCAA----------ATTAATA....................................................................................................................................................2340.2510100000000
.........................................................................................TAAACA--------T-GATT----ATTTGTTTACAGCGGG.........................................................................................2750.2010100000000
.................................................................................TAATATAATAAACA--------T-GATT----ATTTGTT..................................................................................................2650.2010100000000
....................................................................................................................................................................GAAGACGCCGATTTCGACCGA.................................2150.2010000000010
...................................................................................................................TTGTTTACAGCGGGATTTAA-GGA...............................................................................2350.2010000001000
....................................................................................................................TGTTTACAGCGGGATTTAA-GGAA------------AG................................................................2550.2010000001000
.................................................................................................................................................................TTAGAAGACGCCGATTTCGACCGA.................................2450.2010100000000
.......................................................................................................T-GATT----ATTTGTTTACAGCGGG.........................................................................................2150.2010100000000
.................................................................................................................................................................TTAGAAGACGCCGATTTCGACC...................................2250.2010100000000
....TC-----------TAGCCATCCGTAGT-------AAGTAT..............................................................................................................................................................................2260.1710100000000
........................................................................................................................TACAGCGGGATTTAA-GGAA------------AGATT.............................................................2470.1410100000000
.......................................................................................................................TTACAGCGGGATTTAA-GGAA------------AGATTTT...........................................................2770.1410100000000
.......................................................................................................................TTACAGCGGGATTTAA-GGAA------------AGA...............................................................2370.1410100000000
..........................................................................................................................CAGCGGGATTTAA-GGAA------------AGATTTTC..........................................................2570.1410010000000
........................................................................................................................TACAGCGGGATTTAA-GGAA------------AGATTTC...........................................................2670.1410000001000
........................................................................................................................TACAGCGGGATTTAA-GGAA------------AG................................................................2170.1410000001000
.......................................................................................................................TTACAGCGGGATTTAA-GGAA------------AGATT.............................................................2570.1410100000000
......................................................................................................................TTTACAGCGGGATTTAA-GGAA------------AGA...............................................................2470.1410000000100
.......................................................................................................................TTACAGCGGGATTTAA-GGAA------------AGATTT............................................................2670.1410100000000
.........................................................................................................................ACAGCGGGATTTAA-GGAA------------AG................................................................2080.1310100000000
.............................................................................................................................CGGGATTTAA-GGAA------------AGATTTT...........................................................2190.1110100000000
...........................................................................................................................AGCGGGATTTAA-GGAA------------AG................................................................1890.1110100000000
.............................................................................................................................CGGGATTTAA-GGAA------------AGA...............................................................1790.1110000000010
droVir3
TTAAAC-----------CAACCACATAAGT-TTGTAGCCTGTAT-------------------ATGCGCAA-----------------TTT---AAT-AT---TACTTT----G-TTGTCTACAGGTGCATTTAGAAGAG------------AAGTTTGAGCTGGAAGACGCCGATTTTGACCGCGTAACACAAAAATATTTTGAGTACGCGC---AGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................TTTGAGCTGGAAGACGCT.............................................1820.501000000000010000000000000000000000000000000000000000000000000000
droAna3
TAATGT-----------TAGGAATAAGAAGT-------AAG----T---TTAA----------AAAAATATGT--ATATTTTTAAATATTTAA------T----TAGAC----CTTTTTTTCCAGGTGCTTTTCT-ACAA------------ACATTTGGGTTGAAAGACGAAGACTTTGACCGAGTAGCGAAGCGGTTCTCTCAGTATGCCC---AGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droKik1
TAACGT-----------CAGCCGTCAGAGG-----------TATATT-TTTCTTATATTTTGTATTAATTA--TTTAATTA---------------T-TA---TAATTT----ATATATTTACAGCCGCTTTTAT-GAAG------------AAATTCCCGTTGGAAGACGCCGACTTCGACAAAGTTACGCAAAAATACATCCAATACGCGC---AGSizeHit CountTotal NormTotal
No Reads
droEle1
G-------------------CATTCCGTCGT-------AAGATTATT-TTTATAAAAACGTATATAAGCCA-------------------------T-AT---TAATTTGTTTA-TTT----------------T-ATAC------------ATCTTTGCCCTAGAAGACGACGGTCTCAACAGGGTACCACAAAATTTATTGCAATACGCCC---AGSizeHit CountTotal NormTotal
No Reads
droRho1
TTACTC-----------TAGCAATCCGTAGT-------AAGTATTTT-TTTAT----------AAGAATTA--TTGTATTACAATAT-----ACAAT-ATTACAAAATC----GTTTTTTTACAGCGGGATTTAA-GTAA------------ATATTTTCCTTAGAAGATTCAGATTTCGACAGGATAACCCAAAAGTTTTTCCAGTACGCCC---AGSizeHit CountTotal NormTotal
No Reads
droTak1
TTACTC-----------TAGCAATCCGTTGT-------AAGTATATT-TT-AT----------ACGAATAA--TTATATTACAATGC-----ACAAT-ATTACAAAATC----GTTTTTTTACAGCGGGATTTAA-AGAA------------AGATTTTTCCTGGAAGAAGCGGATTTCGACAGGATAACCCAGAAGTTTTTCCAGTACGCCC---AGSizeHit CountTotal NormTotal
No Reads
droYak3
TAACGT-----------CATCCGTCAGAGG-----------TATATT-TTTTAT-----TATTAATAATTA--TTTACTTA---------------T-AA---TAATTT----GTATTCTTACAGTCTCTTTCAA-GAAT------------AAATTTGCATTGGAGGACTTCGATTTCGACCGCATTACCCAAAAATATTTTCAATATGCGC---GTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads

Generated: 06/08/2015 at 04:00 PM