ID:

dpe_1282

 Coordinate:

scaffold_26:507686-507836 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-34.6 -34.1 -34.1

Flybase annnotation

exon [dper_GLEANR_13793:5]; CDS [Dper\GL13389-cds]; intron [Dper\GL13389-in]

No Repeatable elements found

mature
star
  1. scaffold_42:216084-216110 -
  2. scaffold_703:117-143 +
  3. scaffold_2:1757352-1757378 +
  4. scaffold_2:1761012-1761038 +
  5. scaffold_2:1770680-1770706 -
  6. scaffold_2229:4587-4613 -
  7. scaffold_16:1013897-1013923 +
  8. dpe_1282  scaffold_26:507692-507718 +
  9. scaffold_189:19649-19675 +
  10. scaffold_637:1443-1469 -
  11. scaffold_4853:1280-1306 -
  12. scaffold_1501:4099-4125 +
  13. scaffold_5782:1237-1263 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCCGACGTCACGCTCAGACTGATTTTCTGTCTCTCTCGCACGCACTCTTTGTCGTGTCGTTTAATATTAGCAGCGTCTGCCGGAGGAGAGCCATACTGACTAAGTATCGGGTATAAATGTAGAGTTGCGGTCTCCGCAGCAACTCACAACGTTCCCCCTCGTTTTTTTTAGCTATTAACTGTGATTCTCTGATTGATGCAGGTCCAATACCACACAGAGGGCATGGATAGCCTGTACAAGCAAGTACCTAA
********************************************************................(((((...(((((((..((........(((((...((((....(((((.(((((((.((....)).)))))))...)))))....)))).....))))).........))..)))))))...)))))**************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
 V057
head
 V111
male body		 V042
embryo
...........................................................................................................................................................................................................CCAATACCACACAGAGGGC............................. 19 0 1 2.00 2 0 2 0 0 0
.............................................................................................................................................................................ATTAACTGTGATTCTCTGATTGATGC.................................................... 26 0 1 2.00 2 0 2 0 0 0
........................................................TCGTTTAATATTAGCAGCGTCTGCCGG........................................................................................................................................................................ 27 0 13 1.38 18 12 5 0 0 1
...................................................................................................................................................................................................................ACACAGCGGGCATTGATGGCCT.................. 22 3 1 1.00 1 0 0 1 0 0
........................................................TCGTTTAATATTAGCAGCGTCTG............................................................................................................................................................................ 23 0 13 1.00 13 12 0 0 1 0
........................................................TCGTTTAATATTAGCAGCGTCTGCCG......................................................................................................................................................................... 26 0 13 0.62 8 7 1 0 0 0
........................................................TCGTTTAATATTAGCAGCGTCTGCCGGA....................................................................................................................................................................... 28 0 13 0.54 7 5 2 0 0 0
........................................................TCGTTTAATATTAGCAGCGTCTGC........................................................................................................................................................................... 24 0 13 0.46 6 4 0 0 0 2
..........................................................................................................TCGGGTATAAATGTAGAGTTG............................................................................................................................ 21 0 20 0.40 8 7 0 0 1 0
.................................................................................................................TAAATGTAGAGTTGCGGTCT...................................................................................................................... 20 0 20 0.25 5 0 0 0 5 0
.........................................................CGTTTAATATTAGCAGCGTCTGCCG......................................................................................................................................................................... 25 0 13 0.23 3 3 0 0 0 0
........................................................TCGTTTAATATTAGCAGCGTCTGCC.......................................................................................................................................................................... 25 0 13 0.15 2 2 0 0 0 0
........................................................TCGTTTAATATTAGCAGCGTCT............................................................................................................................................................................. 22 0 13 0.15 2 2 0 0 0 0
........................................................TCGTTTAATATTAGCAGCGTC.............................................................................................................................................................................. 21 0 14 0.14 2 2 0 0 0 0
.............................................................TAATATTAGCAGCGTCTGCCGG........................................................................................................................................................................ 22 0 14 0.14 2 1 0 0 1 0
...................................................TCGTGTCGTTTAATATTAGCAGCGTCTG............................................................................................................................................................................ 28 0 10 0.10 1 1 0 0 0 0
...............................................................ATATTAGCAGCGTCTGCCGGA....................................................................................................................................................................... 21 0 20 0.10 2 2 0 0 0 0
...................................................................................................................AATGTAGAGTTGCGGTCTCC.................................................................................................................... 20 0 20 0.10 2 0 0 0 2 0
...............................................................................................................................CGGTCTCCGCAGCAACTCACA....................................................................................................... 21 0 20 0.10 2 2 0 0 0 0
......................................................TGTCGTTTAATATTAGCAGCGTCTGCCG......................................................................................................................................................................... 28 0 11 0.09 1 1 0 0 0 0
......................................................TGTCGTTTAATATTAGCAGCGTCTGC........................................................................................................................................................................... 26 0 11 0.09 1 1 0 0 0 0
........................................................TCGTTTAATATTAGCAGCGTCTCCC.......................................................................................................................................................................... 25 1 13 0.08 1 1 0 0 0 0
.........................................................CGTTTAATATTAGCAGCGTCTGCCGGA....................................................................................................................................................................... 27 0 13 0.08 1 1 0 0 0 0
................................................TTGTCGTGTCGTTTAATATTAGCAGCG................................................................................................................................................................................ 27 0 13 0.08 1 1 0 0 0 0
...............................................TTTGTCGTGTCGTTTAATATTAGCAGC................................................................................................................................................................................. 27 0 13 0.08 1 1 0 0 0 0
.................................................TGTCGTGTCGTTTAATATTAGCAG.................................................................................................................................................................................. 24 0 13 0.08 1 1 0 0 0 0
.........................................................CGTTTAATATTAGCAGCGTCTGCC.......................................................................................................................................................................... 24 0 13 0.08 1 1 0 0 0 0
.........................................................CGTTTAATATTAGCAGCGTCTG............................................................................................................................................................................ 22 0 13 0.08 1 1 0 0 0 0
..........................................................GTTTAATATTAGCAGCGTCTG............................................................................................................................................................................ 21 0 13 0.08 1 0 0 0 1 0
.................................................TGTCGTGTCGTTTAATATTAGCAGC................................................................................................................................................................................. 25 0 13 0.08 1 0 0 0 0 1
.........................................................CGTTTAATATTAGCAGCGTCTGC........................................................................................................................................................................... 23 0 13 0.08 1 1 0 0 0 0
........................................................TCGTTTAATATTAGCAGCGT............................................................................................................................................................................... 20 0 14 0.07 1 1 0 0 0 0
.............................................................TAATATTAGCAGCGTCTGC........................................................................................................................................................................... 19 0 14 0.07 1 1 0 0 0 0
......................................................TGTCGTTTAATATTAGCAGCG................................................................................................................................................................................ 21 0 15 0.07 1 1 0 0 0 0
........................................................TCGTTTAATATTAGCAGCTTCTGCCGT........................................................................................................................................................................ 27 2 16 0.06 1 1 0 0 0 0
.................................................TGTCGTGTCGTTTAATATTAGCA................................................................................................................................................................................... 23 0 16 0.06 1 0 0 0 1 0
........................................................TCGTTTAATATTAGCAGCG................................................................................................................................................................................ 19 0 17 0.06 1 0 0 0 1 0
........................................................TCGTTTAAGATTAGCAGCGTCTGC........................................................................................................................................................................... 24 1 18 0.06 1 1 0 0 0 0
........................................................TCGTTTAAGATTAGCAGCGTCTGCCGG........................................................................................................................................................................ 27 1 18 0.06 1 1 0 0 0 0
........................................................TCGTTTAACATTAGCAGCGTCTGCC.......................................................................................................................................................................... 25 1 19 0.05 1 1 0 0 0 0
........................................................TCGTTTAACATTAGCAGCGTCTG............................................................................................................................................................................ 23 1 19 0.05 1 1 0 0 0 0
........................................................TCGTTTAAAATTAGCAGCGTCTG............................................................................................................................................................................ 23 1 20 0.05 1 1 0 0 0 0
.................................................................ATTAGCAGCGTCTGCCGGAGGCGAGCCA.............................................................................................................................................................. 28 1 20 0.05 1 0 0 0 1 0
................................................................................................................ATAAATGTAGAGTTGCGGTCTCCGCA................................................................................................................. 26 0 20 0.05 1 0 0 0 0 1
.....................................................................................................................TGTAGAGTTGCGGTCTCCGCAG................................................................................................................ 22 0 20 0.05 1 0 0 0 0 1
.................................................................................................GACTAAGTATCGGGTATAAATGT................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
..........................................................................................................TCGGGTATAAATGTAGAGTTGCGGT........................................................................................................................ 25 0 20 0.05 1 1 0 0 0 0
.................................................TGTCGTGTCGTTTAATATTAG..................................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0
....................................................................................................................ATGTAGAGTTGCGGTCTCCGC.................................................................................................................. 21 0 20 0.05 1 1 0 0 0 0
............................................................................................................................TTGCGGTCTCCGCAGCAACTCA......................................................................................................... 22 0 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

CGGCTGCAGTGCGAGTCTGACTAAAAGACAGAGAGAGCGTGCGTGAGAAACAGCACAGCAAATTATAATCGTCGCAGACGGCCTCCTCTCGGTATGACTGATTCATAGCCCATATTTACATCTCAACGCCAGAGGCGTCGTTGAGTGTTGCAAGGGGGAGCAAAAAAAATCGATAATTGACACTAAGAGACTAACTACGTCCAGGTTATGGTGTGTCTCCCGTACCTATCGGACATGTTCGTTCATGGATT
****************************************************................(((((...(((((((..((........(((((...((((....(((((.(((((((.((....)).)))))))...)))))....)))).....))))).........))..)))))))...)))))******************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
..........................................................................CAGACGGCCTCCTCTCGGTATGACT........................................................................................................................................................ 25 0 20 1.30 26 26
...................................................................ATCGTCGCAGACGGCCTCCTC................................................................................................................................................................... 21 0 20 0.10 2 2
......................................................ACAGCAAATTATAATCGTCGC................................................................................................................................................................................ 21 0 15 0.07 1 1
.............................................AGAAACAGCACAGCAAATTATAATCGT................................................................................................................................................................................... 27 0 15 0.07 1 1
.......................................................CAGCAAATTATGATCGTCGC................................................................................................................................................................................ 20 1 20 0.05 1 1
.....................................................................CGTCGCAGACGGCCTCCTCT.................................................................................................................................................................. 20 0 20 0.05 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_26:507636-507886 + dpe_1282 GCCGACGT--------------------------CACGCTCAGACTGATTTTCTGTCTCTCTCGCACGCACTCTTTGTC-----GTGTCGTTTAATATTAGCAGCGTCTGCCGGAGGAGAGCC-----A----TACTGACTAAGTATCGGGTATAAATGTAGAGTTGCGGTCTCCGCAGCAA----CTCACAACGTTCCCCCTCGTTTTTTTTAGCTATTAACTGTGATTC-----------------TCTGATTGATGCA---GGTCCAATACCACACAGAGGGCATGG----ATAGCCTGTACAAGCAAGTACCTAA
dp5 XL_group1a:163103-163352 - dps_2414 GCCGACGT--------------------------CACGCTCAGACTGATTTTCTGTCTCTCTCGCACGCACTCTTTGTC-----GTGTCGTTTAATATTAGCAGCGTCTGCCGGAGGAGAGCC-----A----TACTGACTAAGTATCGGGTATAAATGTAGAGTTGCGGTCTCCGCAGCAA----CTCACAACGTTCCCCCTC-TTTTTTTTAGCTATTAACTGTGATTC-----------------TCTGGTTGATGCA---GGTCCAATACCACACAGAGGGCATGG----ATAGCCTGTACAAGCAAGTACCTAA
droWil2 scf2_1100000004902:5655999-5656056 + GCTGTTGT--------------------------CTCGCTCTCACTGCTTCTCTCTCTCTCTCACCCGCTCTT----TC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTCTTTT
droVir3 scaffold_13049:9695396-9695494 + ACTCACAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCCGCGGGTGCCTTTCGCTCTT------TGACTC-----------------TCTGATTGGAACA---GGTCCAATGATAGGCGGCGTGCCCGGCTCGACAGCCTG-ACAAGTGAGT------
droMoj3 scaffold_6359:4171304-4171356 - C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATCAATTACCACACCGAGGGCATGG----AAAGTCTCTATGAGTTGGTTCCCAG
droGri2 scaffold_15203:1530599-1530658 - ATTCAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAGATCAATTATCACACCGAAGGCATGG----ACAGTCTCTATGAACTGATACCCCG
droAna3 scaffold_12392:1587-1648 + GGCGATAC--------------------------CTTACTCTCATTCACTCTCTCTCTCTCTCGCACTCTATCTTTCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCCTCT
droBip1 scf7180000396434:39760-39842 - CTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAACTAATATTC----CCTTATATCGTAT-------------TCAGATCCGTTTCCACACCGTTAGCATGG----ATTCCCTGTATGAGTTCGTTCCCCG
droKik1 scf7180000302696:1642471-1642525 + T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGATTAAATATCACACGGAGGGCCTGG----AGAGCCTCTACGCTGAAGTGCCCAG
droFic1 scf7180000453901:899614-899668 - T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATCAAATACCACACGGAGGGCTTGG----AGAGCCTTTATGAGGAAGTGCCCAA
droEle1 scf7180000491001:1708187-1708241 - T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGATCAAGTATCACACGGAGGGCTTGG----AGAGCCTCTATAAGGAAGTGCCCAG
droRho1 scf7180000779506:224374-224456 - TAATTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCCTCTAATGGAACTTATTT-------------GCAGATCAAGTACCACACAGAGGGCTTGG----AGAGCCTCTATAAGGAAGTTCCCAG
droBia1 scf7180000301760:2131212-2131266 - T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATCAAGTACCACACAGAGGGCCTGG----AGAGCCTCTACAAGGAGGTGCCCAG
droTak1 scf7180000412562:3413-3628 - TCCTACGCAGCGCAATTTTAT--TTTAATTTTCTAACGCCCACAAAAATTATATATCTATCTCCCTCGCACTCCCTTTAGCTGAGTTACGATTATTAGTTGGGACACCAACCCGAGTACAGCGTTCGCATTCCCTTTAACTGAGTGACGGGTATT---------AGATAGTCGTGACACCAACCCGACTATAGCGTTCTCTCTTGTTTTTATTAAGTGGTAA--------------------------------------------------------------------------------------------ATTTG
droEug1 scf7180000409533:308125-308196 + AGTAACG----------------------------------------------------------------------------------------------------------------------------------------------GGTATC---------TTATAGTCGCGGCACT----CGACTATAGCGTTTCCTCTTGTTTTTTTTTACTTT--------------------------------------------------------------------------------------------CGACTGTG
dm3 chrX:2146844-2146898 - T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATCCGGTACCACACAGAGGGTATGG----ATAGCCTTTACAAAGAAGTGCCCAG
droSim2 x:1984523-1984577 - T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATCCGGTACCACACAGAGGGTCTGG----ATAGCCTCTACAAGGAAGTGCCCAG
droSec2 scaffold_10:1932748-1932802 - T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATCCGGTATCACACAGAGGGTCTGG----ATAGCCTCTACAAGGAAGTGCCCAG
droYak3 v2_chrUn_6984:10666-10845 - AAAGACGCAGCTCAAGTTTGTCGATTCATGTTGCCACGCCCACTCTA---------------------------------------ACCGTCAAAAATTGTCAGTGCT----GAAGACCCTCCTTCGCACTTTCACTAGCTGAGTAACGGGTATC---------AGATAGTCGGGGAACT----CGGCTATAGCGTTCTCACTTGTTTTTTTTA--TATTAAATTAAATTA-----------------TCAGACT----------------------------------------------------------------
droEre2 scaffold_4644:2112156-2112210 - T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATCAAGTACCACACAGAGGGTCTGG----ATAGCCTCTACAAGGAAGTGCCGCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
GCCGACGT--------------------------CACGCTCAGACTGATTTTCTGTCTCTCTCGCACGCACTCTTTGTC-----GTGTCGTTTAATATTAGCAGCGTCTGCCGGAGGAGAGCC-----A----TACTGACTAAGTATCGGGTATAAATGTAGAGTTGCGGTCTCCGCAGCAA----CTCACAACGTTCCCCCTCGTTTTTTTTAGCTATTAACTGTGATTC-----------------TCTGATTGATGCA---GGTCCAATACCACACAGAGGGCATGG----ATAGCCTGTACAAGCAAGTACCTAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................................................................................CCAATACCACACAGAGGGC.................................1912.002200000
.........................................................................................................................................................................................................................ATTAACTGTGATTC-----------------TCTGATTGATGC...........................................................2612.002200000
.......................................................................................TCGTTTAATATTAGCAGCGTCTGCCGG.............................................................................................................................................................................................................27131.38185121000
.......................................................................................TCGTTTAATATTAGCAGCGTCTG.................................................................................................................................................................................................................23131.00130120001
.......................................................................................TCGTTTAATATTAGCAGCGTCTGCCG..............................................................................................................................................................................................................26130.628170000
.......................................................................................TCGTTTAATATTAGCAGCGTCTGCCGGA............................................................................................................................................................................................................28130.547250000
.......................................................................................TCGTTTAATATTAGCAGCGTCTGC................................................................................................................................................................................................................24130.466042000
..................................................................................................................................................TCGGGTATAAATGTAGAGTTG........................................................................................................................................................21200.408070001
.........................................................................................................................................................TAAATGTAGAGTTGCGGTCT..................................................................................................................................................20200.255000005
........................................................................................CGTTTAATATTAGCAGCGTCTGCCG..............................................................................................................................................................................................................25130.233030000
.......................................................................................TCGTTTAATATTAGCAGCGTCTGCC...............................................................................................................................................................................................................25130.152020000
.......................................................................................TCGTTTAATATTAGCAGCGTCT..................................................................................................................................................................................................................22130.152020000
.......................................................................................TCGTTTAATATTAGCAGCGTC...................................................................................................................................................................................................................21140.142020000
............................................................................................TAATATTAGCAGCGTCTGCCGG.............................................................................................................................................................................................................22140.142010001
.............................................................................TC-----GTGTCGTTTAATATTAGCAGCGTCTG.................................................................................................................................................................................................................28100.101010000
..............................................................................................ATATTAGCAGCGTCTGCCGGA............................................................................................................................................................................................................21200.102020000
...........................................................................................................................................................AATGTAGAGTTGCGGTCTCC................................................................................................................................................20200.102000002
.......................................................................................................................................................................CGGTCTCCGCAGCAA----CTCACA...............................................................................................................................21200.102020000
.....................................................................................TGTCGTTTAATATTAGCAGCGTCTGCCG..............................................................................................................................................................................................................28110.091010000
.....................................................................................TGTCGTTTAATATTAGCAGCGTCTGC................................................................................................................................................................................................................26110.091010000
........................................................................................CGTTTAATATTAGCAGCGTCTGCCGGA............................................................................................................................................................................................................27130.081010000
..........................................................................TTGTC-----GTGTCGTTTAATATTAGCAGCG.....................................................................................................................................................................................................................27130.081010000
.........................................................................TTTGTC-----GTGTCGTTTAATATTAGCAGC......................................................................................................................................................................................................................27130.081010000
...........................................................................TGTC-----GTGTCGTTTAATATTAGCAG.......................................................................................................................................................................................................................24130.081010000
........................................................................................CGTTTAATATTAGCAGCGTCTGCC...............................................................................................................................................................................................................24130.081010000
........................................................................................CGTTTAATATTAGCAGCGTCTG.................................................................................................................................................................................................................22130.081010000
.........................................................................................GTTTAATATTAGCAGCGTCTG.................................................................................................................................................................................................................21130.081000001
...........................................................................TGTC-----GTGTCGTTTAATATTAGCAGC......................................................................................................................................................................................................................25130.081001000
........................................................................................CGTTTAATATTAGCAGCGTCTGC................................................................................................................................................................................................................23130.081010000
.......................................................................................TCGTTTAATATTAGCAGCGT....................................................................................................................................................................................................................20140.071010000
............................................................................................TAATATTAGCAGCGTCTGC................................................................................................................................................................................................................19140.071010000
.....................................................................................TGTCGTTTAATATTAGCAGCG.....................................................................................................................................................................................................................21150.071010000
...........................................................................TGTC-----GTGTCGTTTAATATTAGCA........................................................................................................................................................................................................................23160.061000001
.......................................................................................TCGTTTAATATTAGCAGCG.....................................................................................................................................................................................................................19170.061000001
........................................................................................................................................................ATAAATGTAGAGTTGCGGTCTCCGCA.............................................................................................................................................26200.051001000
.............................................................................................................................................................TGTAGAGTTGCGGTCTCCGCAG............................................................................................................................................22200.051001000
.........................................................................................................................................GACTAAGTATCGGGTATAAATGT...............................................................................................................................................................23200.051010000
..................................................................................................................................................TCGGGTATAAATGTAGAGTTGCGGT....................................................................................................................................................25200.051010000
...........................................................................TGTC-----GTGTCGTTTAATATTAG..........................................................................................................................................................................................................................21200.051010000
............................................................................................................................................................ATGTAGAGTTGCGGTCTCCGC..............................................................................................................................................21200.051010000
....................................................................................................................................................................TTGCGGTCTCCGCAGCAA----CTCA.................................................................................................................................22200.051010000
dp5
GCCGACGT--------------------------CACGCTCAGACTGATTTTCTGTCTCTCTCGCACGCACTCTTTGTC-----GTGTCGTTTAATATTAGCAGCGTCTGCCGGAGGAGAGCC-----A----TACTGACTAAGTATCGGGTATAAATGTAGAGTTGCGGTCTCCGCAGCAA----CTCACAACGTTCCCCCTC-TTTTTTTTAGCTATTAACTGTGATTC-----------------TCTGGTTGATGCA---GGTCCAATACCACACAGAGGGCATGG----ATAGCCTGTACAAGCAAGTACCTAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................TGTC-----GTGTCGTTTAATATTAGCAGCG.....................................................................................................................................................................................................................26815.63125011800202120
...........................................................................TGTC-----GTGTCGTTTAATATTAGCAG.......................................................................................................................................................................................................................24118.45930392100021300
...........................................................................TGTC-----GTGTCGTTTAATATTAGCAGC......................................................................................................................................................................................................................25107.407404880500580
...........................................................................TGTC-----GTGTCGTTTAATATTAGCAGCGTC...................................................................................................................................................................................................................2884.883903440001000
...........................................................................TGTC-----GTGTCGTTTAATATTAGCA........................................................................................................................................................................................................................23113.553907001094180
..................................................TTCTGTCTCTCTCGCACGCAC........................................................................................................................................................................................................................................................21203.056106001000000
...........................................................................TGTC-----GTGTCGTTTAATATTAGCAGCGT....................................................................................................................................................................................................................2782.88230900503060
.......................................................................TCTTTGTC-----GTGTCGTTTAATATTAG..........................................................................................................................................................................................................................25202.555100000000510
.......................................................................................TCGTTTAATATTAGCAGCGTCTG.................................................................................................................................................................................................................23112.452702700000000
.......................................................................................TCGTTTAATATTAGCAGCGTCTGCCGG.............................................................................................................................................................................................................2792.442201830001000
.......................................................................................TCGTTTAATATTAGCAGCGTCTGC................................................................................................................................................................................................................24111.912101530001200
.........................................AGACTGATTTTCTGTCTCTCTCGC..............................................................................................................................................................................................................................................................24201.503003000000000
.......................................................................................TCGTTTAATATTAGCAGCGTCTGCCGGA............................................................................................................................................................................................................2891.441301210000000
.......................................TCAGACTGATTTTCTGTCTCTCT.................................................................................................................................................................................................................................................................23201.302600000000260
.......T--------------------------CACGCTCAGACTGATTTTCT.........................................................................................................................................................................................................................................................................21201.302602600000000
................................................................................................................................................................................CAGCAA----CTCACAACGTTCCCCCTC-T.................................................................................................................2551.0050320000000
..............................................................................................................................................................................................................................................................................................ATGG----ATAGCCTGTACAAGCA.........2011.0010100000000
.......................................................................................TCGTTTAATATTAGCAGCGTCTGCCG..............................................................................................................................................................................................................26100.9090800100000
..........................................................................................TTTAATATTAGCAGCGTCTGCCGG.............................................................................................................................................................................................................2490.7870500000020
.............................................................................TC-----GTGTCGTTTAATATTAGCAGC......................................................................................................................................................................................................................23120.7590100000080
.....................................................................ACTCTTTGTC-----GTGTCGTTTAA................................................................................................................................................................................................................................21200.751501500000000
.......................................................................................TCGTTTAATATTAGCAGCGTCT..................................................................................................................................................................................................................22110.7380510000020
.........................................................................................................................................GACTAAGTATCGGGTATAAATGTAGA............................................................................................................................................................26200.651301300000000
..........................................GACTGATTTTCTGTCTCTCTC................................................................................................................................................................................................................................................................21200.651301300000000
.............................................................................TC-----GTGTCGTTTAATATTAGCAGCG.....................................................................................................................................................................................................................24100.6060200000040
.........................................................................TTTGTC-----GTGTCGTTTAATATTAGCAGCG.....................................................................................................................................................................................................................2870.5740300000010
............................................................................GTC-----GTGTCGTTTAATATTAGCAGCG.....................................................................................................................................................................................................................2590.5650500000000
............................................................................GTC-----GTGTCGTTTAATATTAGCAG.......................................................................................................................................................................................................................23120.5060600000000
................................................................................................................................................................................CAGCAA----CTCACAACGTTCCCCCTC-TT................................................................................................................2640.5020110000000
............................................................................GTC-----GTGTCGTTTAATATTAGCAGC......................................................................................................................................................................................................................24110.4550500000000
................................................TTTTCTGTCTCTCTCGCACGC..........................................................................................................................................................................................................................................................21200.4590000000090
.......................................................................................TCGTTTAATATTAGCAGCGTCTGCC...............................................................................................................................................................................................................25100.4040310000000
...........................................................................TGTC-----GTGTCGTTTAATATTAGCAGA......................................................................................................................................................................................................................25140.3650200000030
.........................................................................TTTGTC-----GTGTCGTTTAATATTAGCAGC......................................................................................................................................................................................................................2790.3330000000030
............................................................................GTC-----GTGTCGTTTAATATTAGCAGCGTC...................................................................................................................................................................................................................2790.3330300000000
.......................................................................TCTTTGTC-----GTGTCGTTTAATATTAGCAG.......................................................................................................................................................................................................................2890.3330000000030
...................................................................................................................................................................................CAA----CTCACAACGTTCCCCCTC-T.................................................................................................................2260.3320110000000
...........................................................................TGTC-----GTGTCGTTTAATATTAGCAGCGA....................................................................................................................................................................................................................2790.3330200100000
..........................................................................................TTTAATATTAGCAGCGTCTGCCG..............................................................................................................................................................................................................23100.3030300000000
..........................................................................TTGTC-----GTGTCGTTTAATATTAGCAG.......................................................................................................................................................................................................................25100.3030200000010
.....................................................................................................................................................................TGCGGTCTCCGCAGCAA----CTCACAACGT...........................................................................................................................27200.3060600000000
.........................................................................TTTGTC-----GTGTCGTTTAATATTAGCA........................................................................................................................................................................................................................25100.3030000000210
.............................................................................TC-----GTGTCGTTTAATATTAGCAGCGTC...................................................................................................................................................................................................................26100.3030210000000
...................................................................GCACTCTTTGTC-----GTGTCGTTTAATAT.............................................................................................................................................................................................................................26200.3060000000600
........................................................................................................................................TGACTAAGTATCGGGTATAAATGTAGAG...........................................................................................................................................................28200.2550000000050
.............................................................................TC-----GTGTCGTTTAATATTAGCAG.......................................................................................................................................................................................................................22130.2330100000020
.......................................................................TCTTTGTC-----GTGTCGTTTAATATTAGCA........................................................................................................................................................................................................................2790.2220000001100
............................................................................................TAATATTAGCAGCGTCTGCCGG.............................................................................................................................................................................................................2290.2220200000000
..........................................................................................TTTAATATTAGCAGCGTCTGCCGGA............................................................................................................................................................................................................2590.2220200000000
.........................................................................TTTGTC-----GTGTCGTTTAATATTAGCAG.......................................................................................................................................................................................................................26100.2020000000020
.............................................................................TC-----GTGTCGTTTAATATTAGCAGCGTCT..................................................................................................................................................................................................................27100.2020100000100
..............................................................................C-----GTGTCGTTTAATATTAGCAGCGTCTG.................................................................................................................................................................................................................27100.2020000000200
............................................................................GTC-----GTGTCGTTTAATATTAGCAGCGA....................................................................................................................................................................................................................26100.2020200000000
........................................................................................CGTTTAATATTAGCAGCGTCTGC................................................................................................................................................................................................................23110.1820200000000
............................................................................GTC-----GTGTCGTTTAATATTAGCA........................................................................................................................................................................................................................22120.1720200000000
.....................................................................................................CAGCGTCTGCCGGAGGAGAG......................................................................................................................................................................................................20130.1520100010000
...............................................................................................................................................GTATCGGGTATAAATGTAGAGTTGCG......................................................................................................................................................26200.1530000000030
...........................................................................TGTC-----GTGTCGTTTAATATTAGCAA.......................................................................................................................................................................................................................24140.1420110000000
....................................................................................................GCAGCGTCTGCCGGAGGAGA.......................................................................................................................................................................................................20140.1420200000000
........................................................................CTTTGTC-----GTGTCGTTTAATATTAGCAG.......................................................................................................................................................................................................................2790.1110000000010
..........................................................................TTGTC-----GTGTCGTTTAATATTAGCAGC......................................................................................................................................................................................................................2690.1110000000100
........................................................................................CGTTTAATATTAGCAGCGTCTGCCGGA............................................................................................................................................................................................................2790.1110100000000
.....................................................................................TGTCGTTTAATATTAGCAGCGTCTGCCGG.............................................................................................................................................................................................................2990.1110010000000
.........................................................................................GTTTAATATTAGCAGCGTCTGCCGG.............................................................................................................................................................................................................2590.1110100000000
............................................................................................TAATATTAGCAGCGTCTGCCGGA............................................................................................................................................................................................................2390.1110100000000
.....................................................................................TGTCGTTTAATATTAGCAGCGTCTGCCG..............................................................................................................................................................................................................28100.1010100000000
..................................CACGCTCAGACTGATTTTCTGTC......................................................................................................................................................................................................................................................................23200.1020000000200
.................................................................................................................................................ATCGGGTATAAATGTAGAGTTGCGG.....................................................................................................................................................25200.1020200000000
............................................................................................TAATATTAGCAGCGTCTGCC...............................................................................................................................................................................................................20100.1010100000000
.............................................................................................................GCCGGAGGAGAGCC-----A----TACTGA....................................................................................................................................................................................21200.1020200000000
..........................................................................TTGTC-----GTGTCGTTTAATATTAGCA........................................................................................................................................................................................................................24100.1010000001000
.........................................................................................................................................GACTAAGTATCGGGTATA....................................................................................................................................................................18200.1020200000000
...........................................................TCTCGCACGCACTCTTTGTC-----GTGTCGT....................................................................................................................................................................................................................................27200.1020200000000
........................................................................................CGTTTAATATTAGCAGCGTCTGCCG..............................................................................................................................................................................................................25100.1010100000000
......................................................................................GTCGTTTAATATTAGCAGCGTCTGCCG..............................................................................................................................................................................................................27100.1010100000000
...GACGT--------------------------CACGCTCAGACTGATTT............................................................................................................................................................................................................................................................................22200.1020200000000
...........................................................................................TTAATATTAGCAGCGTCTGC................................................................................................................................................................................................................20110.0910010000000
..........................................................................................TTTAATATTAGCAGCGTCTG.................................................................................................................................................................................................................20110.0910100000000
.............................................................................TC-----GTGTCGTTTAATATTAGCAGCGA....................................................................................................................................................................................................................25110.0910100000000
.....................................................................................TGTCGTTTAATATTAGCAGCG.....................................................................................................................................................................................................................21110.0910100000000
........................................................................................CGTTTAATATTAGCAGCGTCT..................................................................................................................................................................................................................21110.0910100000000
..................................................................................................TAGCAGCGTCTGCCGGAGGAGAGCC-----A----TAC.......................................................................................................................................................................................29110.0910000000010
..........................................................................................TTTAATATTAGCAGCGTCTGC................................................................................................................................................................................................................21110.0910010000000
.......................................................................................TCGTTTAATATTAGCAGCGTCC..................................................................................................................................................................................................................22120.0810010000000
.............................................................................TC-----GTGTCGTTTAATATTAGCAGCGTCA..................................................................................................................................................................................................................27120.0810100000000
..................................................................................................TAGCAGCGTCTGCCGGAGGAGAGC.....................................................................................................................................................................................................24120.0810100000000
.....................................................................................TGTCGTTTAATATTAGCAGCGTCTC.................................................................................................................................................................................................................25120.0810000001000
.................................................................................................TTAGCAGCGTCTGCCGGAGGA.........................................................................................................................................................................................................21130.0810100000000
....................................................................................GTGTCGTTTAATATTAGCAG.......................................................................................................................................................................................................................20130.0810000000010
...................................................................................................AGCAGCGTCTGCCGGAGGAG........................................................................................................................................................................................................20130.0810100000000
.....................................................................................TGTCGTTTAATATTAGCAGC......................................................................................................................................................................................................................20130.0810100000000
..................................................................................................TAGCAGCGTCTGCCGGAGGAGA.......................................................................................................................................................................................................22130.0810000000010
...................................................................................................................................................................................CAA----CTCACAACGTTCCCCCTC-TA................................................................................................................23140.0710100000000
..............................................................................................ATATTAGCAGCGTCTGCCGG.............................................................................................................................................................................................................20140.0710100000000
................................................................................................................................................................................CAGCAA----CTCACAACGTTCCCCCTC-TAG...............................................................................................................27150.0710000000100
...........................................................................TGTC-----GTGTCGTTTAATATTAGCAT.......................................................................................................................................................................................................................24160.0610100000000
......................................................................................................AGCGTCTGCCGGAGGAGAG......................................................................................................................................................................................................19160.0610100000000
.............................................................................................AATATTAGCAGCGTCTGC................................................................................................................................................................................................................18160.0610100000000
...........................................................................TGTC-----GTGTCGTTTAATATTAGCAAA......................................................................................................................................................................................................................25180.0610000000100
...........................................................................TGTC-----GTGTCGTTTAATATTAGCAGCA.....................................................................................................................................................................................................................26190.0510100000000
.......................................................................................................................................CTGACTAAGTATCGGGTATAAATGT...............................................................................................................................................................25200.0510100000000
...........................................................................................................................................................AATGTAGAGTTGCGGTCTCCG...............................................................................................................................................21200.0510000001000
......................................................................................................................................................GTATAAATGTAGAGTTGCG......................................................................................................................................................19200.0510000000010
............................................................................................................TGCCGGAGGAGAGCC-----A----TACTGACT..................................................................................................................................................................................24200.0510000001000
..............................................................................................................................................................GTAGAGTTGCGGTCTCCGCA.............................................................................................................................................20200.0510100000000
.......................................................................................TCGTTTAATATTAGCAGCGTCTGA................................................................................................................................................................................................................24200.0510100000000
.............................................................................................................................................................................CCGCAGCAA----CTCACAACGTTCC........................................................................................................................22200.0510010000000
........................................................................CTTTGTC-----GTGTCGTTTAATATTA...........................................................................................................................................................................................................................23200.0510100000000
............................................................................................................................................................................TCCGCAGCAA----CTCACAACGTTCCCCC.....................................................................................................................26200.0510001000000
...........................................................................................................................................................AATGTAGAGTTGCGGTCTC.................................................................................................................................................19200.0510000000010
......................................................................................................AGCGTCTGCCGGAGGAGT.......................................................................................................................................................................................................18200.0510100000000
........................................................CTCTCTCGCACGCACTCTTTG..................................................................................................................................................................................................................................................21200.0510000000100
....................................................................CACTCTTTGTC-----GTGTCGTTTA.................................................................................................................................................................................................................................21200.0510000010000
........................................................................................................................................TGACTAAGTATCGGGTATAAAT.................................................................................................................................................................22200.0510000100000
......................................................................CTCTTTGTC-----GTGTCGTTTAA................................................................................................................................................................................................................................20200.0510000000010
...........................................................................................................................................CTAAGTATCGGGTATAAATGTAGAGT..........................................................................................................................................................26200.0510000000010
............................................................................................................................................................................TCCGCAGCAA----CTCACAACGT...........................................................................................................................20200.0510100000000
................................................................................................................................................TATCGGGTATAAATGTAGAG...........................................................................................................................................................20200.0510000000100
.....................................................................................................................................................GGTATAAATGTAGAGTTGCG......................................................................................................................................................20200.0510000000010
..............................................GATTTTCTGTCTCTCTCG...............................................................................................................................................................................................................................................................18200.0511000000000
droWil2
GCTGTTGT--------------------------CTCGCTCTCACTGCTTCTCTCTCTCTCTCACCCGCTCTT----TC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTCTTTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
ACTCACAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCCGCGGGTGCCTTTCGCTCTT------TGACTC-----------------TCTGATTGGAACA---GGTCCAATGATAGGCGGCGTGCCCGGCTCGACAGCCTG-ACAAGTGAGT------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATCAATTACCACACCGAGGGCATGG----AAAGTCTCTATGAGTTGGTTCCCAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................................................................................ATCAATTACCACACCGAGGGCATG..............................2411.001000001
........................................................................................................................................................................................................................................................................GATCAATTACCACACCGAGGGCA................................2311.001000100
droGri2
ATTCAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAGATCAATTATCACACCGAAGGCATGG----ACAGTCTCTATGAACTGATACCCCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
............................................................................................................................................................................................................................................................................AATTATCACACCGAAGGCATGG----AC.......................2411.00110
droAna3
GGCGATAC--------------------------CTTACTCTCATTCACTCTCTCTCTCTCTCGCACTCTATCTTTCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCCTCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................TTACTCTCATTCACTCTCTCTCTCT...................................................................................................................................................................................................................................................................25200.50101000000
...................................TTACTCTCATTCACTCTCTCTCTCTC..................................................................................................................................................................................................................................................................26200.357601000
..................................CTTACTCTCATTCACTCTCTCTC......................................................................................................................................................................................................................................................................23200.357070000
..................................CTTACTCTCATTCACTCTCTCTCTCT...................................................................................................................................................................................................................................................................26200.357070000
..................................CTTACTCTCATTCACTCTCTCTCT.....................................................................................................................................................................................................................................................................24200.204400000
..................................CTTACTCTCATTCACTCTCTCTCC.....................................................................................................................................................................................................................................................................24200.204040000
....................................TACTCTCATTCACTCTCTCTCTCTCTCG...............................................................................................................................................................................................................................................................28200.204400000
....................................TACTCTCATTCACTCTCTCTCTCTCT.................................................................................................................................................................................................................................................................26200.153003000
.....TAC--------------------------CTTACTCTCATTCACTCTCTCTCTC....................................................................................................................................................................................................................................................................28200.153030000
......................................CTCTCATTCACTCTCTCTCTCTCTCGCA.............................................................................................................................................................................................................................................................28200.153300000
.........................................TCATTCACTCTCTCTCTCTCTCGCAC............................................................................................................................................................................................................................................................26200.153300000
.......................................TCTCATTCACTCTCTCTCTCTCTCGCAC............................................................................................................................................................................................................................................................28200.153120000
....................................TACTCTCATTCACTCTCTCTCC.....................................................................................................................................................................................................................................................................22200.102020000
.....................................................TCTCTCTCTCGCACTCTATCTT....................................................................................................................................................................................................................................................22200.102200000
....................................................CTCTCTCTCTCGCACTCTATCTTTC..................................................................................................................................................................................................................................................25200.102020000
..................................................CTCTCTCTCTCTCGCACTCTATCTTTC..................................................................................................................................................................................................................................................27200.102200000
......................................CTCTCATTCACTCTCTCTCTCTCTC................................................................................................................................................................................................................................................................25200.102200000
.....................................ACTCTCATTCACTCTCTCTCTCTCT.................................................................................................................................................................................................................................................................25200.102200000
......................................CTCTCATTCACTCTCTCTCTCTCTCGCAC............................................................................................................................................................................................................................................................29200.102200000
....................................TACTCTCATTCACTCTCTCTCTCTCTC................................................................................................................................................................................................................................................................27200.102020000
....................................TACTCTCATTCACTCTCTCTC......................................................................................................................................................................................................................................................................21200.051010000
.....................................ACTCTCATTCACTCTCTCTCTCT...................................................................................................................................................................................................................................................................23200.051010000
...........................................................TCTCGCACTCTATCTTTCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........20200.051010000
.............................................TCACTCTCTCTCTCTCTCGCACTC..........................................................................................................................................................................................................................................................24200.051010000
....................................TACTCTCATTCACTCTCTC........................................................................................................................................................................................................................................................................19200.051001000
.......C--------------------------CTTACTCTCATTCACTCTCTCTC......................................................................................................................................................................................................................................................................24200.051010000
.........................................................TCTCTCGCACTCTATCTTTC..................................................................................................................................................................................................................................................20200.051010000
.........................................TCATTCACTCTCTCTCTCTCTCGCA.............................................................................................................................................................................................................................................................25200.051010000
.....TAC--------------------------CTTACTCTCATTCACT.............................................................................................................................................................................................................................................................................19200.051010000
...GATAC--------------------------CTTACTCTCATTCACTCTCTCT.......................................................................................................................................................................................................................................................................27200.051010000
..............................................................CGCACTCTATCTTTCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCCTC.25200.051010000
....................................TACTCTCATTCACTCTCTCTCTC....................................................................................................................................................................................................................................................................23200.051001000
..................................CTTACTCTCATTCACTCTCTCTCTCTC..................................................................................................................................................................................................................................................................27200.051010000
.................................................TCTCTCTCTCTCTCGCACTCTATC......................................................................................................................................................................................................................................................24200.051010000
......................................CTCTCATTCACTCTCTCTCTCTCTCG...............................................................................................................................................................................................................................................................26200.051001000
...............................................ACTCTCTCTCTCTCTCGCACTCTATCT.....................................................................................................................................................................................................................................................27200.051100000
......AC--------------------------CTTACTCTCATTCACTCTCTCTCTC....................................................................................................................................................................................................................................................................27200.051100000
..CGATAC--------------------------CTTACTCTCATTCACTCTCTCTC......................................................................................................................................................................................................................................................................29200.051100000
.....................................ACTCTCATTCACTCTCTCTCTCTCTCG...............................................................................................................................................................................................................................................................27200.051100000
......AC--------------------------CTTACTCTCATTCACTCTCTC........................................................................................................................................................................................................................................................................23200.051100000
.....TAC--------------------------CTTACTCTCATTCACTCTCTCTCT.....................................................................................................................................................................................................................................................................27200.051100000
......AC--------------------------CTTACTCTCATTCACTCTCTCTCT.....................................................................................................................................................................................................................................................................26200.051100000
..............................................CACTCTCTCTCTCTCTCGCACTCTATC......................................................................................................................................................................................................................................................27200.051100000
..................................CTTACTCTCATTCACTCTCTC........................................................................................................................................................................................................................................................................21200.051010000
.....TAC--------------------------CTTACTCTCATTCACTCTCTCTC......................................................................................................................................................................................................................................................................26200.051001000
........................................CTCATTCACTCTCTCTCTCTCTCGCA.............................................................................................................................................................................................................................................................26200.051100000
................................................CTCTCTCTCTCTCTCGCACTCTATCTT....................................................................................................................................................................................................................................................27200.051100000
.....TAC--------------------------CTTACTCTCATTCACTC............................................................................................................................................................................................................................................................................20200.051001000
.....TAC--------------------------CTTACTCTCATTCACTCTC..........................................................................................................................................................................................................................................................................22200.051010000
......................................CTCTCATTCACTCTCTCTCTCTCT.................................................................................................................................................................................................................................................................24200.051001000
.GCGATAC--------------------------CTTACTCTCATTCACTCTC..........................................................................................................................................................................................................................................................................26200.051100000
.....TAC--------------------------CTTACTCTCATTCACTCTCTCTCTCT...................................................................................................................................................................................................................................................................29200.051100000
...GATAC--------------------------CTTACTCTCATTCACTCTCTC........................................................................................................................................................................................................................................................................26200.051010000
..............................................CACTCTCTCTCTCTCTCGCACTCTA........................................................................................................................................................................................................................................................25200.051100000
droBip1
CTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAACTAATATTC----CCTTATATCGTAT-------------TCAGATCCGTTTCCACACCGTTAGCATGG----ATTCCCTGTATGAGTTCGTTCCCCGSizeHit CountTotal NormTotal
No Reads
droKik1
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGATTAAATATCACACGGAGGGCCTGG----AGAGCCTCTACGCTGAAGTGCCCAGSizeHit CountTotal NormTotal
No Reads
droFic1
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATCAAATACCACACGGAGGGCTTGG----AGAGCCTTTATGAGGAAGTGCCCAASizeHit CountTotal NormTotal
No Reads
droEle1
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGATCAAGTATCACACGGAGGGCTTGG----AGAGCCTCTATAAGGAAGTGCCCAGSizeHit CountTotal NormTotal
No Reads
droRho1
TAATTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCCTCTAATGGAACTTATTT-------------GCAGATCAAGTACCACACAGAGGGCTTGG----AGAGCCTCTATAAGGAAGTTCCCAGSizeHit CountTotal NormTotal
No Reads
droBia1
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATCAAGTACCACACAGAGGGCCTGG----AGAGCCTCTACAAGGAGGTGCCCAGSizeHit CountTotal NormTotal
No Reads
droTak1
TCCTACGCAGCGCAATTTTAT--TTTAATTTTCTAACGCCCACAAAAATTATATATCTATCTCCCTCGCACTCCCTTTAGCTGAGTTACGATTATTAGTTGGGACACCAACCCGAGTACAGCGTTCGCATTCCCTTTAACTGAGTGACGGGTATT---------AGATAGTCGTGACACCAACCCGACTATAGCGTTCTCTCTTGTTTTTATTAAGTGGTAA--------------------------------------------------------------------------------------------ATTTGSizeHit CountTotal NormTotal
No Reads
droEug1
AGTAACG----------------------------------------------------------------------------------------------------------------------------------------------GGTATC---------TTATAGTCGCGGCACT----CGACTATAGCGTTTCCTCTTGTTTTTTTTTACTTT--------------------------------------------------------------------------------------------CGACTGTGSizeHit CountTotal NormTotal
No Reads
dm3
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATCCGGTACCACACAGAGGGTATGG----ATAGCCTTTACAAAGAAGTGCCCAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................................................................................................................................................ATGG----ATAGCCTTTACAAAGAAGT......2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000000000
.............................................................................................................................................................................................................................................................................................TATGG----ATAGCCTTTACAAAGA.........2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
...............................................................................................................................................................................................................................................................................TACCACACAGAGGGTATGG----ATAGCCTT.................2712.0020000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................CACAGAGGGTATGG----ATAG.....................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..............................................................................................................................................................................................................................................................................................ATGG----ATAGCCTTTACAAAGA.........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................TATGG----ATAGCCTTTACAAAGAAGTGCC...2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................CACACAGAGGGTATGG----AT.......................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................GGGTATGG----ATAGCCTTTACAAAGAA........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................CACAGAGGGTATGG----ATAGC....................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
......................................................................................................................................................................................................................................................................................................ATAGCCTTTACAAAGAAGT......1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.....................................................................................................................................................................................................................................................................................ACAGAGGGTATGG----ATAGCCTTTAC..............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................GATCCGGTACCACACAGAGGGT.................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..............................................................................................................................................................................................................................................................................................ATGG----ATAGCCTTTACAAAGAAGTGC....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................ATCCGGTACCACACAGAGGGT.................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
droSim2
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATCCGGTACCACACAGAGGGTCTGG----ATAGCCTCTACAAGGAAGTGCCCAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................AGGGTCTGG----ATAGCCTCT................1812.00220000000000000000
.................................................................................................................................................................................................................................................................................CCACACAGAGGGTCTGG----ATAGCCT..................2411.00101000000000000000
.....................................................................................................................................................................................................................................................................................ACAGAGGGTCTGG----ATAGC....................1811.00101000000000000000
..................................................................................................................................................................................................................................................................................CACACAGAGGGTCTGG----ATAGCCT..................2311.00101000000000000000
droSec2
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATCCGGTATCACACAGAGGGTCTGG----ATAGCCTCTACAAGGAAGTGCCCAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................................................................................................................................................................................................ATCACACAGAGGGTCTGG----ATAGCCT..................2512.0020020
....................................................................................................................................................................................................................................................................................CACAGAGGGTCTGG----ATAGCCT..................2111.0010100
................................................................................................................................................................................................................................................................................ATCACACAGAGGGTCTGG----.........................1811.0010010
............................................................................................................................................................................................................................................................................................GTCTGG----ATAGCCTCTACAAGGAAGT......2511.0010100
droYak3
AAAGACGCAGCTCAAGTTTGTCGATTCATGTTGCCACGCCCACTCTA---------------------------------------ACCGTCAAAAATTGTCAGTGCT----GAAGACCCTCCTTCGCACTTTCACTAGCTGAGTAACGGGTATC---------AGATAGTCGGGGAACT----CGGCTATAGCGTTCTCACTTGTTTTTTTTA--TATTAAATTAAATTA-----------------TCAGACT----------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................TCGATTCATGTTGCCACGCCC......................................................................................................................................................................................................................................................................................21201.7034034000000000
..................TGTCGATTCATGTTGCCACGCCCACT...................................................................................................................................................................................................................................................................................26200.9018001800000000
....................TCGATTCATGTTGCCACGCCCA.....................................................................................................................................................................................................................................................................................22200.10200200000000
............................................................................................................................................................................GGGGAACT----CGGCTATAGCGTTC.........................................................................................................................22100.10100000010000
.........................................................................................................................................................TC---------AGATAGTCGGGGAACT----CGGCT..................................................................................................................................23150.07100000010000
........................................................................................................................................................ATC---------AGATAGTCGGGGAACT----CGGC...................................................................................................................................23160.06101000000000
..........CTCAAGTTTGTCGATTCATGTTGCC............................................................................................................................................................................................................................................................................................25200.05100100000000
.....................................................................................................CAGTGCT----GAAGACCCTCCTTC.................................................................................................................................................................................................21200.05101000000000
..........................................................................................TCAAAAATTGTCAGTGCT----GAAGACC........................................................................................................................................................................................................25200.05100100000000
droEre2
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATCAAGTACCACACAGAGGGTCTGG----ATAGCCTCTACAAGGAAGTGCCGCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................GGGTCTGG----ATAGCCTCTACA.............2011.0011000000
.........................................................................................................................................................................................................................................................................ATCAAGTACCACACAGAGGGT.................................2111.0011000000
..........................................................................................................................................................................................................................................................................................GGGTCTGG----ATAGCCTCTACAAGG..........2311.0011000000
....................................................................................................................................................................................................................................................................................CACAGAGGGTCTGG----ATAGCCTCTACA.............2611.0011000000

Generated: 06/08/2015 at 04:00 PM