ID:

dpe_1278

 Coordinate:

scaffold_26:412442-412592 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.9 -17.5 -17.4

Flybase annnotation

CDS [Dper\GL13379-cds]; exon [dper_GLEANR_13783:3]; intron [Dper\GL13379-in]; Antisense to intron [Dper\GL13337-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
AT_richLow_complexityLow_complexity+
AT_richLow_complexityLow_complexity+
mature
star
  1. scaffold_1:5710545-5710565 +
  2. dpe_1278  scaffold_26:412571-412591 +
  3. scaffold_186:36380-36400 -
  4. scaffold_188:713-733 +
  5. scaffold_588:14402-14422 -
  6. scaffold_612:8567-8587 -
  7. scaffold_4735:791-811 -
  8. scaffold_7017:556-576 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------#########-----------------------------------------
AGCCGAAAGTAAAATGAAATGGGACGCACAATTTTTTTTGTTTTTTATAATTTTTAATTTAATTTTAATTTTTAATTTTGGTGGTAGATAAATAGATTACAAAATTATATTATTGAATTAAATTTATTTTGTTTTTGCCCCTTCGACACTCTGTCCAAAGTCAGTTCCAGCGAAAATTGTTATACATATTCGTTGACGCAGGTTGCCTGATGCACAAGAAGATGGCTAGGAAAAAATATATAAATAGAATG
************************************************************************.......((((...((......((..(((((((....(((......)))....)))))))..))......))..))))(((........)))...(((((((...(((...)))..))))))).....*************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V111
male body		 V042
embryo
 M021
embryo
 V050
head
........................................................................TAATTTTGGTGGTAGATAAATA............................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0
..........................................................................................................................................TCCTTCGACACTCTGTCAAAA............................................................................................ 21 2 1 1.00 1 1 0 0 0 0
................AAATGGGACGCACAATTTTTTTTGTT................................................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0
..................................................................................................................................................................................................................TGCACAAGAAGATGGCTAGGAA................... 22 0 1 1.00 1 0 1 0 0 0
...................................................................................................................................................................................TTATACATATTCGTTGACGCA................................................... 21 0 8 0.50 4 3 0 1 0 0
...........................................................................................................................................................................................ATTCGTTGACGCAGGTTGCCTGA......................................... 23 0 2 0.50 1 1 0 0 0 0
................................................................................................................................................................TCAGTTCCAGCGAAAATTGTTATACA................................................................. 26 0 8 0.38 3 2 0 1 0 0
.....................................................................................................................................................................................ATACATATTCGTTGACGCAGG................................................. 21 0 8 0.25 2 2 0 0 0 0
....................................................................................................................................................................TTCCAGCGAAAATTGTTATAC.................................................................. 21 0 8 0.25 2 0 0 0 2 0
................................................................................................................................................................................TTGTTATACATATTCGTTGAC...................................................... 21 0 8 0.25 2 0 0 0 2 0
...................................................................................................................................................................................TTATACATATTCGTTGACGCAGGT................................................ 24 0 8 0.25 2 0 0 2 0 0
....................................................................................................................................TTTTGCCCCTTCGACACTCTGTCC............................................................................................... 24 0 5 0.20 1 1 0 0 0 0
......................................................................................................................................................................................TACATATTCGTTGACGCAGGT................................................ 21 0 10 0.20 2 2 0 0 0 0
...........................................................................................................................................................CAAAGTCAGTTCCAGCGAAAATTGTTA..................................................................... 27 0 20 0.15 3 3 0 0 0 0
...........................................................................................................................................................CAAAGTCAGTTCCAGCGAAAATTG........................................................................ 24 0 20 0.15 3 2 1 0 0 0
......................................................................................................................................................................CCAGCGAAAATTGTTATACA................................................................. 20 0 8 0.13 1 1 0 0 0 0
....................................................................................................................................................................TTCCAGCGAAAATTGTTATACATATT............................................................. 26 0 8 0.13 1 1 0 0 0 0
..............................................................................................................................................................AGTCAGTTCCAGCGAAAATTGTTATAC.................................................................. 27 0 8 0.13 1 1 0 0 0 0
..............................................................................................................................................................................AATTGTTATACATATTCGTT......................................................... 20 0 8 0.13 1 1 0 0 0 0
................................................................................................................................................................................TTGTTATACATATTCGTTGACGCAGG................................................. 26 0 8 0.13 1 1 0 0 0 0
...............................................................................................................................................................................ATTGTTATACATATTCGTTGACGCAGG................................................. 27 0 8 0.13 1 1 0 0 0 0
............................................................................................................................................................................AAAATTGTTATACATATTCGTTGACG..................................................... 26 0 8 0.13 1 1 0 0 0 0
....................................................................................................................................................................................TATACATATTCGTTGACGCA................................................... 20 0 8 0.13 1 0 0 1 0 0
..............................................................................................................................................................................AATTGTTATACATATTCGTTG........................................................ 21 0 8 0.13 1 1 0 0 0 0
...................................................................................................................................................................................TTATACATATTCGTTGACGCAGGTA............................................... 25 1 8 0.13 1 1 0 0 0 0
.....................................................................................................................................................................................ATACATATTCGTTGACGCTGG................................................. 21 1 8 0.13 1 1 0 0 0 0
.......................................................................................................................................................................................ACATATTCGTTGACGCAGG................................................. 19 0 10 0.10 1 1 0 0 0 0
..........................................................................................................................................................................................TATTCGTTGACGCAGGAA............................................... 18 2 20 0.10 2 0 0 0 2 0
......................................................................................................................................................................................TACATATTCGTTGACGCAGG................................................. 20 0 10 0.10 1 0 1 0 0 0
......................................................................................................................................................................................TACATATTGGTTGACGCAGGT................................................ 21 1 10 0.10 1 1 0 0 0 0
...............................................................................................................................................................................................................TGATGCACAAGAAGATGGC......................... 19 0 20 0.05 1 1 0 0 0 0
...............................................................................................................................................................GTCAGTTCCAGCGAAAATTGTTA..................................................................... 23 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................TTTTTCCCCTTCAACAATCTGT................................................................................................. 22 3 20 0.05 1 0 0 0 0 1
............................................................................................................................................................AAAGTCAGTTCCAGCGAAAATTGTTA..................................................................... 26 0 20 0.05 1 1 0 0 0 0
............................................................................................................................................................AAAGTCAGTTCCAGCGAAAATTGT....................................................................... 24 0 20 0.05 1 1 0 0 0 0
...............................................................................................................................................................................................................TGATGCACGAGAAGATGGCTA....................... 21 1 20 0.05 1 1 0 0 0 0
.....................................................................................................................................TTTTCTCCTTCGACACTCTGTCCAA............................................................................................. 25 2 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................CAAAGTCAGTTCCAGCGAAAATTGT....................................................................... 25 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................TTCCAGCGAAAATTGTTAAA................................................................... 20 1 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

TCGGCTTTCATTTTACTTTACCCTGCGTGTTAAAAAAAACAAAAAATATTAAAAATTAAATTAAAATTAAAAATTAAAACCACCATCTATTTATCTAATGTTTTAATATAATAACTTAATTTAAATAAAACAAAAACGGGGAAGCTGTGAGACAGGTTTCAGTCAAGGTCGCTTTTAACAATATGTATAAGCAACTGCGTCCAACGGACTACGTGTTCTTCTACCGATCCTTTTTTATATATTTATCTTAC
***************************************************.......((((...((......((..(((((((....(((......)))....)))))))..))......))..))))(((........)))...(((((((...(((...)))..))))))).....************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total V111
male body		 M042
female body
 V057
head
 V042
embryo
 M021
embryo
.............................................................................................................................................AAGCTGTGAGACAGGTTTCAGTCAAGGT.................................................................................. 28 0 1 2.00 2 2 0 0 0 0
..........................................................................................TTGTCGAATGTTTTAATAGAAT........................................................................................................................................... 22 3 1 1.00 1 0 0 1 0 0
.............................................................................................................................................AAGCGGGGAGACAGGTTT............................................................................................ 18 2 6 0.17 1 0 0 1 0 0
......................................................................................................................................................................GGTCGCTTTTAACAATATGTATAAG............................................................ 25 0 8 0.13 1 0 1 0 0 0
...........................................................................................................................................................................CTTTTAACAATATGTATAAGCAACTGCGT................................................... 29 0 8 0.13 1 0 1 0 0 0
...................................................................................................................................................................CAAGGTCGCTTTTAACAATATGTAT............................................................... 25 0 8 0.13 1 0 1 0 0 0
....................................................................................................................................................................AAGGTCGCTTTTAACAATATG.................................................................. 21 0 8 0.13 1 0 1 0 0 0
.............................................................................................................................................................................TTTGACAATATGTATAAGCAACTGCGT................................................... 27 1 8 0.13 1 0 1 0 0 0
.....................................................................................................................................................................AGGTCGCTTTTGACAATATGT................................................................. 21 1 8 0.13 1 0 1 0 0 0
.........................................................................................................................................................................CGCTTTTAACAATATGTATA.............................................................. 20 0 8 0.13 1 0 1 0 0 0
.............................................................................................................................................................................TTTAACAATATGTATAAGCAACTGCGT................................................... 27 0 8 0.13 1 0 1 0 0 0
.............................................................................................................................................AAGCTGTGATACGGGTTT............................................................................................ 18 2 8 0.13 1 0 0 1 0 0
......................................................................................................................................................................GGTCGCTTTTAACAATATGTA................................................................ 21 0 8 0.13 1 0 0 0 1 0
............................................................................................................................................................................................................CGGACTACGTGTTCTTCTAC........................... 20 0 20 0.10 2 0 2 0 0 0
...........................................................................................................................................................GTTTCAGTCAAGGTCGCTTTT........................................................................... 21 0 20 0.10 2 0 2 0 0 0
..........................................................................TAAAACCACCATTTATTTATCTAAT........................................................................................................................................................ 25 1 17 0.06 1 0 1 0 0 0
...........................................................................................................................................................GTTTCAGTCAAGGTCTTTTT............................................................................ 20 2 20 0.05 1 0 1 0 0 0
...................................................................................................................................................................CAAGGTCGCTTTTAACAATA.................................................................... 20 0 20 0.05 1 0 1 0 0 0
............................................................................................................................................................TTTCAGTCAAGGTCGCTTT............................................................................ 19 0 20 0.05 1 0 1 0 0 0
...................................................................................................................................................................CAAGGTCGCTTTTAACAATAT................................................................... 21 0 20 0.05 1 0 1 0 0 0
..................................................................................................................................................................TCAAGGTCGCTTTTAACAAT..................................................................... 20 0 20 0.05 1 0 0 0 0 1
...............................................................................................................................................................CAGTCAAGGTCGCTTTTAAC........................................................................ 20 0 20 0.05 1 0 1 0 0 0
................................................................................................................................................................AGTCAAGGTCGCTTTTAAC........................................................................ 19 0 20 0.05 1 0 1 0 0 0
.................................................................................................................................................................GTCAAGGTCGCTTTTAACAAT..................................................................... 21 0 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_26:412392-412642 + dpe_1278 AGCCGAAAGTAAAATGAAATGGGAC------------GC--ACAATTT----------TT---------------------------TTTGTTTTTTA------TAATTTTTAATTTAATTTTAATTTTTAATTTTGGTGGTAGATAAATAGATTACAAAATTATATTATTGAATTAAATTTATTTTGTTTTTGCCCCTTCGACACTCTGTCCAAAGTCAGTTCCAGCGAAAATTGTTATACATATTCGTTGACGCAGGTTGCCTGATGCACAAGAAGATGGCTAGGAAAAAATATATAA--------ATAGAATG
dp5 XL_group1a:257651-257906 - AGCCGAAAGTAAAATGAAATGGGAC------------GC--ACAATTT----------TT-------------------------T-TTTGTTTTTTA------TAATTTTTAATTTAATTTCAATTTTTAATTTTGGTGGTAGATAAATAGATTACAAAATTATATTATTGAATTAAATTTATTTTGTTTTTGCCCCTTCGACACTCTGTCCAAAGTCAGTTCCAGCGAAAATTGTTAT----ATTCGTTGACGCAGGTTGCCTGATGCACAAGAAGATGGCTAGGAAAAAATATATACATATGTACATAGAATG
droVir3 scaffold_13050:1948916-1949065 + AGATATCGCAA--AAGGCTG---TCATGAAATATGATTTGCGAAACTTTTTTTGTTTC---ATGCCCATTTTGTTCCCATAAAA----ATGT---T-TGTTGCT--GTTTTTTATTAAATATTTATT--TGATTTT----------------------AAATTGTATTTCAAAGTTAAATAACATTTAATTT----------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000393414:3952-4056 + AAACGATTTTAATATC---------------------------------------------ATACAATTTATATCAATACAACT-CC--------TCAATTAAT--ATTCACTATTCACACACTATTAACATT-AC----------------------AAATTATA--TGAAAATTGAATTT------TTTT----------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000300796:285908-286005 - CGGCAATTTTAAGACT-------------------------------T----------TT---------------------------ATAGTTCTTAGGCGTG----TTTACTATTATTTAGCGAG-TTTTATTTTAAATGTCGAATTATTTACCACAAAAATGTATCGTT-------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491087:100628-100656 + AGCCGAAAATAATATTACAAGCGAC------------AC--AC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000778784:16043-16140 + AGCCAAAATAAATATAAGTAGAAAA------------AG--AT-AT--------------TATAAAGCTGAAAGCAGTACTATATTTT--------TGGTTTTT--CTTTTTTATTTAAATATCTTTTTTAATATTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000298580:1236-1241 + ACGCGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000411155:16714-16804 + TGCCACAATTCAAAAGGAATAAGAT------------AC--ACGATTT----------TTTAT---ATAATACACAGTGCT--------------ATAATGTGC--ATTTCTGCGTCAGTGATTTT---TAACTTCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
AGCCGAAAGTAAAATGAAATGGGAC------------GC--ACAATTT----------TT---------------------------TTTGTTTTTTA------TAATTTTTAATTTAATTTTAATTTTTAATTTTGGTGGTAGATAAATAGATTACAAAATTATATTATTGAATTAAATTTATTTTGTTTTTGCCCCTTCGACACTCTGTCCAAAGTCAGTTCCAGCGAAAATTGTTATACATATTCGTTGACGCAGGTTGCCTGATGCACAAGAAGATGGCTAGGAAAAAATATATAA--------ATAGAATGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................TAATTTTGGTGGTAGATAAATA.....................................................................................................................................................................2211.001000001
................AAATGGGAC------------GC--ACAATTT----------TT---------------------------TTTGTT...............................................................................................................................................................................................................................2611.001000001
...........................................................................................................................................................................................................................................................................TGCACAAGAAGATGGCTAGGAA...........................2211.001000001
............................................................................................................................................................................................................................................TTATACATATTCGTTGACGCA...........................................................2180.504031000
....................................................................................................................................................................................................................................................ATTCGTTGACGCAGGTTGCCTGA.................................................2320.501010000
.........................................................................................................................................................................................................................TCAGTTCCAGCGAAAATTGTTATACA.........................................................................2680.383021000
..............................................................................................................................................................................................................................................ATACATATTCGTTGACGCAGG.........................................................2180.252020000
.............................................................................................................................................................................................................................TTCCAGCGAAAATTGTTATAC..........................................................................2180.252200000
.........................................................................................................................................................................................................................................TTGTTATACATATTCGTTGAC..............................................................2180.252200000
............................................................................................................................................................................................................................................TTATACATATTCGTTGACGCAGGT........................................................2480.252002000
.............................................................................................................................................................................................TTTTGCCCCTTCGACACTCTGTCC.......................................................................................................2450.201010000
...............................................................................................................................................................................................................................................TACATATTCGTTGACGCAGGT........................................................21100.202020000
....................................................................................................................................................................................................................CAAAGTCAGTTCCAGCGAAAATTGTTA.............................................................................27200.153030000
....................................................................................................................................................................................................................CAAAGTCAGTTCCAGCGAAAATTG................................................................................24200.153020001
...............................................................................................................................................................................................................................CCAGCGAAAATTGTTATACA.........................................................................2080.131010000
.............................................................................................................................................................................................................................TTCCAGCGAAAATTGTTATACATATT.....................................................................2680.131010000
.......................................................................................................................................................................................................................AGTCAGTTCCAGCGAAAATTGTTATAC..........................................................................2780.131010000
.......................................................................................................................................................................................................................................AATTGTTATACATATTCGTT.................................................................2080.131010000
.........................................................................................................................................................................................................................................TTGTTATACATATTCGTTGACGCAGG.........................................................2680.131010000
........................................................................................................................................................................................................................................ATTGTTATACATATTCGTTGACGCAGG.........................................................2780.131010000
.....................................................................................................................................................................................................................................AAAATTGTTATACATATTCGTTGACG.............................................................2680.131010000
.............................................................................................................................................................................................................................................TATACATATTCGTTGACGCA...........................................................2080.131001000
.......................................................................................................................................................................................................................................AATTGTTATACATATTCGTTG................................................................2180.131010000
............................................................................................................................................................................................................................................TTATACATATTCGTTGACGCAGGTA.......................................................2580.131010000
................................................................................................................................................................................................................................................ACATATTCGTTGACGCAGG.........................................................19100.101010000
...................................................................................................................................................................................................................................................TATTCGTTGACGCAGGAA.......................................................18200.102200000
...............................................................................................................................................................................................................................................TACATATTCGTTGACGCAGG.........................................................20100.101000001
........................................................................................................................................................................................................................................................................TGATGCACAAGAAGATGGC.................................19200.051010000
........................................................................................................................................................................................................................GTCAGTTCCAGCGAAAATTGTTA.............................................................................23200.051010000
.....................................................................................................................................................................................................................AAAGTCAGTTCCAGCGAAAATTGTTA.............................................................................26200.051010000
.....................................................................................................................................................................................................................AAAGTCAGTTCCAGCGAAAATTGT...............................................................................24200.051010000
....................................................................................................................................................................................................................CAAAGTCAGTTCCAGCGAAAATTGT...............................................................................25200.051010000
dp5
AGCCGAAAGTAAAATGAAATGGGAC------------GC--ACAATTT----------TT-------------------------T-TTTGTTTTTTA------TAATTTTTAATTTAATTTCAATTTTTAATTTTGGTGGTAGATAAATAGATTACAAAATTATATTATTGAATTAAATTTATTTTGTTTTTGCCCCTTCGACACTCTGTCCAAAGTCAGTTCCAGCGAAAATTGTTAT----ATTCGTTGACGCAGGTTGCCTGATGCACAAGAAGATGGCTAGGAAAAAATATATACATATGTACATAGAATGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................TGCACAAGAAGATGGCTAGGAAAA.........................2413.0030000000300
......................................................................................................................................................................................................................................AAATTGTTAT----ATTCGTTGACGCAGG.........................................................2532.3370200000140
...........................................................................................................................................................................................................................................................................TGCACAAGAAGATGGCTAGGAAAAAA.......................2612.0020000000020
...........................................................................................................................................................................................................................................................................TGCACAAGAAGATGGCTAGG.............................2011.0010100000000
.......................................................................................................................................................................................................................................................................CTGATGCACAAGAAGATGGCTAGGA............................2511.0010000000010
............................................................................................................................................................................................................................................TTAT----ATTCGTTGACGCAGG.........................................................1931.0030100000020
....................................................................................................................................................................TATTATTGAATTAAATTTATTTTGTTTT............................................................................................................................2811.0010000000010
...............................................................................................................................................................................................................................................T----ATTCGTTGACGCAGGTTGCCTGA.................................................2421.0020100000100
..........................................................................................................................................................................................................................................TGTTAT----ATTCGTTGACGCAGG.........................................................2130.6720200000000
.....................................................................................................................................................................................................................................AAAATTGTTAT----ATTCGTTGACGCAGG.........................................................2620.5010000000100
.........................................................................................................................................................................................................................TCAGTTCCAGCGAAAATTGTTAT----ATTCG...................................................................2820.5010100000000
...........................................................................................................................................................................................................................................GTTAT----ATTCGTTGACGCAGGTTG......................................................2320.5010000000100
.........................................................................................................................................................................................................................TCAGTTCCAGCGAAAATTGTTAT----ATT.....................................................................2620.5010100000000
.......................................................................................................................................................................................................................................................CGTTGACGCAGGTTGCCTGATG...............................................2220.5010100000000
...............................................................................................................................................................................................................................................T----ATTCGTTGACGCAGGTTGCCTGATG...............................................2620.5010100000000
..........................................................................................................................................................................................................................CAGTTCCAGCGAAAATTGTTAT----........................................................................2260.3320200000000
.......................................................................................................................................................................................................................................................................CTGATGCACAAGAAGATGGCTAG..............................2360.3320000001100
.........................................................................................................................................................................................................................................TTGTTAT----ATTCGTTGACGCAGGT........................................................2330.3310100000000
.......................................................................................................................................................................................................................................AATTGTTAT----ATTCGTTGACGCAGG.........................................................2430.3310100000000
.......................................................................................................................................................................................................................................................................CTGATGCACAAGAAGATGGCT................................2160.3320200000000
......................................................................................................................................................................................................................................AAATTGTTAT----ATTCGTTGACGCAGGT........................................................2630.3310100000000
.........................................................................................................................................................................................................................TCAGTTCCAGCGAAAATTGTTAT----AT......................................................................2530.3310100000000
....................................................................................................................................................................................................................CAAAGTCAGTTCCAGCGAAAATTG................................................................................2440.2510100000000
.....................................................................................................................................................................................................................................................................GCCTGATGCACAAGAAGATGG..................................2140.2510000000010
........................................................................................................................................................................................................................GTCAGTTCCAGCGAAAATTGT...............................................................................2160.1710100000000
......................................................................................................................................................................................................................................................................CCTGATGCACAAGAAGATGGC.................................2160.1710000000100
.........................................................................................................................................................................................................................TCAGTTCCAGCGAAAATTGTTA.............................................................................2260.1710100000000
.........................................................................................................................................................................................................................TCAGTTCCAGCGAAAATTG................................................................................1960.1710100000000
........................................................................................................................................................................................................................GTCAGTTCCAGCGAAAATTGTTAT----........................................................................2460.1710100000000
........................................................................................................................................................................................................................................................................TGATGCACAAGAAGATGGCTAG..............................2260.1710100000000
.........................................................................................................................................................................................................................TCAGTTCCAGCGAAAATTGTTAT----........................................................................2360.1710100000000
........................................................................................................................................................................................................................GTCAGTTCCAGCGAAAATTGTTA.............................................................................2360.1710100000000
droVir3
AGATATCGCAA--AAGGCTG---TCATGAAATATGATTTGCGAAACTTTTTTTGTTTC---ATGCCCATTTTGTTCCCATAAAA----ATGT---T-TGTTGCT--GTTTTTTATTAAATATTTATT--TGATTTT----------------------AAATTGTATTTCAAAGTTAAATAACATTTAATTT----------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................TG---TCATGAAATATGATTTGCGAAACTT............................................................................................................................................................................................................................................................................2731.003000000000000000000000000000003000000000000000000000000000000000
..................TG---TCATGAAATATGATTTGCGAAACTTT...........................................................................................................................................................................................................................................................................2830.672002000000000000000000000000000000000000000000000000000000000000
....................................................................TTTTGTTCCCATAAAA----ATGT---T-TGTTG......................................................................................................................................................................................................................2680.635005000000000000000000000000000000000000000000000000000000000000
....................................................................TTTTGTTCCCATAAAA----ATGT---T-TGTTGC.....................................................................................................................................................................................................................2780.504003100000000000000000000000000000000000000000000000000000000000
....................................................................TTTTGTTCCCATAAAA----ATGT---T-TGTT.......................................................................................................................................................................................................................2590.333003000000000000000000000000000000000000000000000000000000000000
...............................TATGATTTGCGAAACTTTTTTTGTTTC---A..............................................................................................................................................................................................................................................................2830.331000000000000000000000000010000000000000000000000000000000000000
..................TG---TCATGAAATATGATTTGCGAAACT.............................................................................................................................................................................................................................................................................2630.331001000000000000000000000000000000000000000000000000000000000000
..........................TGAAATATGATTTGCGAAACTTTTT.........................................................................................................................................................................................................................................................................2570.292000001000000000000000000000000000010000000000000000000000000000
..................TG---TCATGAAATATGATTTGCGAAACTC............................................................................................................................................................................................................................................................................2750.201000000000000000000000000000001000000000000000000000000000000000
...............................TATGATTTGCGAAACTTTTTTTG......................................................................................................................................................................................................................................................................23110.182000000000000000000000000000001100000000000000000000000000000000
..........................................................................TCCCATAAAA----ATGT---T-TGTTGCT--GTTC..............................................................................................................................................................................................................2660.171000000000000000000000000000000000000000000000000000000000000010
.....................................................................TTTGTTCCCATAAAA----ATGT---T-TGTTGC.....................................................................................................................................................................................................................2680.131001000000000000000000000000000000000000000000000000000000000000
..........................TGAAATATGATTTGCGAAACTTT...........................................................................................................................................................................................................................................................................2390.111000000000000000000000000000001000000000000000000000000000000000
............................AAATATGATTTGCGAAACTTTTTTTG......................................................................................................................................................................................................................................................................26110.091000000000000000000000000010000000000000000000000000000000000000
...............................TATGATTTGCGAAACTTTTTTTGT.....................................................................................................................................................................................................................................................................24110.091000000000000000000000000000001000000000000000000000000000000000
droBip1
AAACGATTTTAATATC---------------------------------------------ATACAATTTATATCAATACAACT-CC--------TCAATTAAT--ATTCACTATTCACACACTATTAACATT-AC----------------------AAATTATA--TGAAAATTGAATTT------TTTT----------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CGGCAATTTTAAGACT-------------------------------T----------TT---------------------------ATAGTTCTTAGGCGTG----TTTACTATTATTTAGCGAG-TTTTATTTTAAATGTCGAATTATTTACCACAAAAATGTATCGTT-------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AGCCGAAAATAATATTACAAGCGAC------------AC--AC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AGCCAAAATAAATATAAGTAGAAAA------------AG--AT-AT--------------TATAAAGCTGAAAGCAGTACTATATTTT--------TGGTTTTT--CTTTTTTATTTAAATATCTTTTTTAATATTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
ACGCGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TGCCACAATTCAAAAGGAATAAGAT------------AC--ACGATTT----------TTTAT---ATAATACACAGTGCT--------------ATAATGTGC--ATTTCTGCGTCAGTGATTTT---TAACTTCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads

Generated: 06/08/2015 at 03:59 PM