ID:

dpe_1265

 Coordinate:

scaffold_25:897648-897723 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dper\GL26883-cds]; exon [dper_GLEANR_9417:1]; CDS [Dper\GL26883-cds]; exon [dper_GLEANR_9417:2]; intron [Dper\GL26883-in]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------######----------------------------------------------------------------------------##################################################
TGTGTGTATGTTTAACTATTCTGGAAAAAATAAGAACGAACGCAATGAACGTAAGTATATCAACGCGAAACAGCACGTTTTTCCTGTTTGGTTTCACTAATTTGAAATACCTTCAATTGTTAAAAGGGAAAATTGGTGAAGCTCGATTCTGCCGACTGTGAAGGCTCATCTGATGA
**************************************************....((((.((((.((.((((((..........)))))).)).........)))).))))................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M021
embryo
 V111
male body		 M042
female body
...........................................................................................................................................AGCTCGATTCTGCCGACT................... 18 0 1 3.00 3 3 0 0
.............................ATAAGAACGAACGCAATGAAC.............................................................................................................................. 21 0 1 3.00 3 3 0 0
.........................................................................................................................................GAAGCTCGATTCTGCCGACTGTGAAG............. 26 0 1 2.00 2 2 0 0
...................TCTGGAAAAAATAAGAAC........................................................................................................................................... 18 0 1 2.00 2 2 0 0
.......................................................................................................................................GTGAAGCTCGATTCTGCCGACTGTGAAG............. 28 0 1 2.00 2 2 0 0
................TATTCTGGAAAAAATAAGAAC........................................................................................................................................... 21 0 1 1.00 1 1 0 0
.........................................................................................................................................GAAGCTCGATTCTGCCGACTGGGAAG............. 26 1 1 1.00 1 1 0 0
................................................................................................................................................GATTCTGCCGACTGTGAAGGC........... 21 0 1 1.00 1 1 0 0
..........................................................................................................................AAAGGGCTAATTGGTGAGGCT................................. 21 3 1 1.00 1 0 1 0
.........GTTTAACTATTCTGGAAAAA................................................................................................................................................... 20 0 1 1.00 1 1 0 0
...........................................................................................................................................AGCTCGATTCTGCCGACTGTGAAG............. 24 0 1 1.00 1 1 0 0
..............................................................................TTTTTCTGTTTGGATACACTA............................................................................. 21 3 7 0.14 1 0 0 1
..................................................................GAAACAGCACGTTTGTGA............................................................................................ 18 3 20 0.10 2 0 2 0
.............................................TGAACTTAAGCATATCAA................................................................................................................. 18 2 20 0.05 1 0 0 1

Anti-sense strand reads

ACACACATACAAATTGATAAGACCTTTTTTATTCTTGCTTGCGTTACTTGCATTCATATAGTTGCGCTTTGTCGTGCAAAAAGGACAAACCAAAGTGATTAAACTTTATGGAAGTTAACAATTTTCCCTTTTAACCACTTCGAGCTAAGACGGCTGACACTTCCGAGTAGACTACT
**************************************************....((((.((((.((.((((((..........)))))).)).........)))).))))................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V057
head
 V111
male body
.............................................................................................................................................GAGATAAGACGGCTGACAGT............... 20 2 1 1.00 1 1 0 0
..........................TTTGATAGTTGCTTGCGTTAC................................................................................................................................. 21 3 6 0.17 1 0 1 0
..............................................................................AAAAAGACAAACCTATGTGAT............................................................................. 21 3 7 0.14 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_25:897598-897773 + dpe_1265 TGTGTGTATGTTTAACTATTCTGGAAAAAATAAGAACGAACGCAATGAACGTAAGTATATCAACGCGAAACAGCACGTTTTTCCTGTTTGGTTTCACTAATTTGAAATACCTTCAATTGTTAAAAGGGAAAATTGGTGAAGCTCGATTCTGCCGACTGTGAAGGCTCATCTGATGA
dp5 XL_group1a:6423253-6423425 - ---GTGTATGTTTAACTATTCTGGAAAAAATAAGAACGAACGCAATGAACGTAAGTATTTCAACGCGAGACAGCACGTTTTTCCTGTTTGGTTTCACTAATTTGAAATACCTTCAATTGTTAAAAGGGAAAATTGGTGAAGCTCGATTCTGCCGACTGTGAAGGCTCATCTGATGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
TGTGTGTATGTTTAACTATTCTGGAAAAAATAAGAACGAACGCAATGAACGTAAGTATATCAACGCGAAACAGCACGTTTTTCCTGTTTGGTTTCACTAATTTGAAATACCTTCAATTGTTAAAAGGGAAAATTGGTGAAGCTCGATTCTGCCGACTGTGAAGGCTCATCTGATGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................AGCTCGATTCTGCCGACT...................1813.003300000
.............................ATAAGAACGAACGCAATGAAC..............................................................................................................................2113.003300000
.........................................................................................................................................GAAGCTCGATTCTGCCGACTGTGAAG.............2612.002200000
...................TCTGGAAAAAATAAGAAC...........................................................................................................................................1812.002200000
.......................................................................................................................................GTGAAGCTCGATTCTGCCGACTGTGAAG.............2812.002200000
................TATTCTGGAAAAAATAAGAAC...........................................................................................................................................2111.001100000
................................................................................................................................................GATTCTGCCGACTGTGAAGGC...........2111.001100000
.........GTTTAACTATTCTGGAAAAA...................................................................................................................................................2011.001100000
...........................................................................................................................................AGCTCGATTCTGCCGACTGTGAAG.............2411.001100000
dp5
---GTGTATGTTTAACTATTCTGGAAAAAATAAGAACGAACGCAATGAACGTAAGTATTTCAACGCGAGACAGCACGTTTTTCCTGTTTGGTTTCACTAATTTGAAATACCTTCAATTGTTAAAAGGGAAAATTGGTGAAGCTCGATTCTGCCGACTGTGAAGGCTCATCTGATGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................CTGGAAAAAATAAGAACGAACGC.....................................................................................................................................2311.0010010000000

Generated: 06/08/2015 at 03:56 PM