ID:

dpe_121

 Coordinate:

scaffold_13:201113-201175 +

 Confidence:

Known Ortholog

 Class:

Testes-restricted

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-34.2 -33.6 -33.6

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ACTATCATAGTATCCTGTGAAGAGAACACTGTTTTATGCGGTTGAAGTAGTGGGTGGAAGAACTAAAATATTTGTATATTTTCAATTGAATAAATTAGATTTTCTGCCTACAACTTCGATTCGCATCGACCCCTGTTTATGCACTCTCGGGAGATCCTTGGGG

***********************************(((((((((((((.((((((((((((.((((..((((((............))))))..)))).)))))))))))).))))))).)))))).************************************ 		Read size # Mismatch Hit Count Total Norm Total V111

male body		 M042

female body

 V057

head

 V050

head

 M021

embryo
..................................................TGGGTGGAAGAACTAAAATATT........................................................................................... 22 0 1 21.00 21 12 1 6 2 0
..........................................................................................TAAATTAGATTTTCTGCCTACA................................................... 22 0 1 13.00 13 0 12 0 0 1
..................................................TGGGTGGAAGAACTAAAAT.............................................................................................. 19 0 1 7.00 7 6 0 1 0 0
..................................................TGGGTGGAAGAACTAAAATA............................................................................................. 20 0 1 6.00 6 6 0 0 0 0
..................................................TGGGTGGAAGAACTAAAATAT............................................................................................ 21 0 1 6.00 6 5 0 1 0 0
...........................................................................................AAATTAGATTTTCTGCCTACA................................................... 21 0 1 4.00 4 0 4 0 0 0
..................................................TGGGTGGAAGAACTAAAATATTTGTA....................................................................................... 26 0 1 4.00 4 4 0 0 0 0
..................................................TGGGTGGAAGAACTAAAATATTC.......................................................................................... 23 1 1 3.00 3 3 0 0 0 0
..................................................TGGGTGGAAGAACTAAAATATTT.......................................................................................... 23 0 1 3.00 3 2 0 0 1 0
..................................................TGGGTGGAAGAACTAAAATATTTC......................................................................................... 24 1 1 2.00 2 2 0 0 0 0
..................................................TGGGTGGAAGAACTAAAATATTCCT........................................................................................ 25 2 1 2.00 2 2 0 0 0 0
..................................................TGGGTGGAAGAACTAAAATATTCT......................................................................................... 24 2 1 2.00 2 2 0 0 0 0
..................................................TGGGTGGAAGAACTAAAATATTTA......................................................................................... 24 1 1 2.00 2 2 0 0 0 0
..................................................TGGGTGGAAGAACTAAAATATTCTC........................................................................................ 25 3 1 2.00 2 2 0 0 0 0
..................................................TGGGTGGAAGAACTAAAATATTTGTAT...................................................................................... 27 0 1 1.00 1 1 0 0 0 0
..................................................TGGGTGGAAGAACTAAAATATTTGTATC..................................................................................... 28 1 1 1.00 1 1 0 0 0 0
..................................................TGGGTGGAAGAACTAAAATATTCCC........................................................................................ 25 3 1 1.00 1 1 0 0 0 0
..................................................TGGGTGGAAGAACTAAAATATTCA......................................................................................... 24 2 1 1.00 1 1 0 0 0 0
..................................................TGGGTGGAAGAACTAAAATAA............................................................................................ 21 1 1 1.00 1 1 0 0 0 0
..................................................TGGGTGGAAGAACTAACATATT........................................................................................... 22 1 1 1.00 1 0 0 0 1 0
..................................................TGGGTGGAAGAACTAAAATATTTGTATAA.................................................................................... 29 1 1 1.00 1 1 0 0 0 0
..................................................TGGGAGGAAGAACTAAAATATT........................................................................................... 22 1 1 1.00 1 1 0 0 0 0
..................................................TGGGTGGAAGAACTAAAATATTTTA........................................................................................ 25 2 1 1.00 1 1 0 0 0 0
..................................................TGGTTGGAAGAACTAAAATATTCC......................................................................................... 24 3 1 1.00 1 1 0 0 0 0
..........................................................................................TAAATTAGATTTTCTGCCTAC.................................................... 21 0 1 1.00 1 0 1 0 0 0
..................................................TGGGTGGAAGAACTAAAATC............................................................................................. 20 1 1 1.00 1 1 0 0 0 0
..................................................TGGGTGGAAGAACTAAAATATTCC......................................................................................... 24 2 1 1.00 1 1 0 0 0 0
..................................................TGGGAGGAAGAACTAAAATATTTCC........................................................................................ 25 3 1 1.00 1 1 0 0 0 0
..............................GTTTTATGCGGTTGAAGTAG................................................................................................................. 20 0 2 0.50 1 1 0 0 0 0
..TATTACAGTATCCTGTGAGGAG........................................................................................................................................... 22 3 2 0.50 1 0 0 1 0 0
..TATCAGAGCATCCTGTGAGGAGA.......................................................................................................................................... 23 3 3 0.33 1 0 0 1 0 0
..................................................TGGGTGGAAGAACTAATATTC............................................................................................ 21 3 7 0.14 1 1 0 0 0 0
..............................................................................................................................................ACTCTCGGGATATACTGGG.. 19 3 15 0.07 1 0 1 0 0 0
..........................................TGAGGTAGTGGGTAGTAGA...................................................................................................... 19 3 20 0.05 1 0 0 1 0 0

Anti-sense strand reads

TGATAGTATCATAGGACACTTCTCTTGTGACAAAATACGCCAACTTCATCACCCACCTTCTTGATTTTATAAACATATAAAAGTTAACTTATTTAATCTAAAAGACGGATGTTGAAGCTAAGCGTAGCTGGGGACAAATACGTGAGAGCCCTCTAGGAACCCC

************************************(((((((((((((.((((((((((((.((((..((((((............))))))..)))).)))))))))))).))))))).)))))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droPer2 scaffold_13:201063-201225 + dpe_121 confident ACTATCATAGTATCCTGTGAAGAGAACACTGTTTTATGCGGTTGAAGTAGTGGGTGGAAGAACTAAAATATTTGTATATTTTCAATTGAATAAATTAGATTTTCTGCCTACAACTTCGATTCGCATCGACCCCTGTTTATGCACTCTCGGGAGATCCTTGGGG
dp5 XL_group1e:8363220-8363382 - dps-mir-2538 Known_mirbase ACTATCATAGTATCCTGTGAAGAGAACACTGTTTTATGCGGTTGAAGTAGTAGGTGGAAGAACTAAAATATTTGTATATTTTCAATTGAATAAATTAGATTTTCTGCCTGCAACTTCGATTCGCAACGACCCCTGTTTATGCACTCTCGTGAGATCCTTGAGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
ACTATCATAGTATCCTGTGAAGAGAACACTGTTTTATGCGGTTGAAGTAGTGGGTGGAAGAACTAAAATATTTGTATATTTTCAATTGAATAAATTAGATTTTCTGCCTACAACTTCGATTCGCATCGACCCCTGTTTATGCACTCTCGGGAGATCCTTGGGGSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
..................................................TGGGTGGAAGAACTAAAATATT...........................................................................................22121.00210102612
..........................................................................................TAAATTAGATTTTCTGCCTACA...................................................22113.00131120000
..................................................TGGGTGGAAGAACTAAAAT..............................................................................................1917.007000016
..................................................TGGGTGGAAGAACTAAAATA.............................................................................................2016.006000006
..................................................TGGGTGGAAGAACTAAAATAT............................................................................................2116.006000015
...........................................................................................AAATTAGATTTTCTGCCTACA...................................................2114.004040000
..................................................TGGGTGGAAGAACTAAAATATTTGTA.......................................................................................2614.004000004
..................................................TGGGTGGAAGAACTAAAATATTC..........................................................................................2313.003000003
..................................................TGGGTGGAAGAACTAAAATATTT..........................................................................................2313.003000102
..................................................TGGGTGGAAGAACTAAAATATTTC.........................................................................................2412.002000002
..................................................TGGGTGGAAGAACTAAAATATTCT.........................................................................................2412.002000002
..................................................TGGGTGGAAGAACTAAAATATTTA.........................................................................................2412.002000002
..................................................TGGGTGGAAGAACTAAAATATTCTC........................................................................................2512.002000002
..................................................TGGGTGGAAGAACTAAAATATTTGTAT......................................................................................2711.001000001
..................................................TGGGTGGAAGAACTAAAATATTTGTATC.....................................................................................2811.001000001
..................................................TGGGTGGAAGAACTAAAATATTCCC........................................................................................2511.001000001
..................................................TGGGTGGAAGAACTAAAATATTCA.........................................................................................2411.001000001
..................................................TGGGTGGAAGAACTAAAATAA............................................................................................2111.001000001
..................................................TGGGTGGAAGAACTAAAATATTTGTATAA....................................................................................2911.001000001
..................................................TGGGTGGAAGAACTAAAATATTTTA........................................................................................2511.001000001
..........................................................................................TAAATTAGATTTTCTGCCTAC....................................................2111.001010000
..................................................TGGGTGGAAGAACTAAAATC.............................................................................................2011.001000001
..................................................TGGGTGGAAGAACTAAAATATTCC.........................................................................................2411.001000001
..............................GTTTTATGCGGTTGAAGTAG.................................................................................................................2020.501000001
dp5
ACTATCATAGTATCCTGTGAAGAGAACACTGTTTTATGCGGTTGAAGTAGTAGGTGGAAGAACTAAAATATTTGTATATTTTCAATTGAATAAATTAGATTTTCTGCCTGCAACTTCGATTCGCAACGACCCCTGTTTATGCACTCTCGTGAGATCCTTGAGGSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
..........................................................................................TAAATTAGATTTTCTGCCTGCA...................................................221473.004733155510014421
..................................................TAGGTGGAAGAACTAAAATATT...........................................................................................221104.00104050137620260
..........................................................................................TAAATTAGATTTTCTGCCTG.....................................................20157.005722000001520
..................................................TAGGTGGAAGAACTAAAATAT............................................................................................21141.004100000430070
..........................................................................................TAAATTAGATTTTCTGCCTGC....................................................21126.002600100002230
..................................................TAGGTGGAAGAACTAAAATA.............................................................................................20114.00140000006080
...............................TTTTATGCGGTTGAAGTAG.................................................................................................................19112.001200000010110
..................................................TAGGTGGAAGAACTAAAATATTT..........................................................................................23111.00110100015040
..........................................................................................TAAATTAGATTTTCTGCCTGT....................................................21110.001000000000100
..........................................................................................TAAATTAGATTTTCTGCCTGCAA..................................................2319.0090000000090
..................................................TAGGTGGAAGAACTAAAATATTA..........................................................................................2318.0080000001070
..................................................TAGGTGGAAGAACTAAAATATTTGTA.......................................................................................2618.0080000003050
...........................................................................................AAATTAGATTTTCTGCCTGCA...................................................2118.0080300000050
..................................................TAGGTGGAAGAACTAAAATATTC..........................................................................................2318.0080000006020
..........................................................................................TAAATTAGATTTTCTGCCTGCC...................................................2216.0060000000060
..........................................................................................TAAATTAGATTTTCTGCCTGCCC..................................................2315.0050000000050
..................................................TAGGTGGAAGAACTAAAATATC...........................................................................................2215.0050000003020
..........................................................................................TAAATTAGATTTTCTGCCTGCT...................................................2224.0080000000080
..............................GTTTTATGCGGTTGAAGTAG.................................................................................................................2014.0040000001021
..................................................TAGGTGGAAGAACTAAAATATA...........................................................................................2213.0030000000030
.........................................................................................ATAAATTAGATTTTCTGCCTGC....................................................2213.0030102000000
..................................................TAGGTGGAAGAACTAAAATATTTC.........................................................................................2413.0030000000030
..................................................TAGGTGGAAGAACTAAAATATTTG.........................................................................................2413.0030000000030
.........................................................................................ATAAATTAGATTTTCTGCCTG.....................................................2112.0020000000020
..................................................TAGGTGGAAGAACTAAAAT..............................................................................................1912.0020000002000
...........................................................................................AAATTAGATTTTCTGCCTGC....................................................2012.0020100000010
..................................................TAGGTGGAAGAACTAAAATATTCT.........................................................................................2412.0020000001010
..................................................TAGGTGGAAGAACTAAAATATTTT.........................................................................................2411.0010000000010
..................................................TAGGTGGAAGAACTAAAATATTTGTAT......................................................................................2711.0010000001000
..........................................................................................TAAATTAGATTTTCTGCCTGA....................................................2111.0010000000010
..................................................TAGGTGGAAGAACTAAAATATTCCA........................................................................................2511.0010000000010
..........................................................................................TAAATTAGATTTTCTGCCT......................................................1911.0010000000010
..........................................................................................TAAATTAGATTTTCTGCCTT.....................................................2011.0010000000010
..................................................TAGGTGGAAGAACTAAAATATTCC.........................................................................................2411.0010000001000
..................................................TAGGTGGAAGAACTAAAATATTAA.........................................................................................2411.0010000000010
..................................................TAGGTGGAAGAACTAAAA...............................................................................................1811.0010000000010
...................................................AGGTGGAAGAACTAAAATAT............................................................................................2011.0010100000000
.........................................................................................ATAAATTAGATTTTCTGCCTGTC...................................................2311.0010000000010
..................................................TAGGTGGAAGAACTAAAATATTTA.........................................................................................2411.0010000000010
...................................................AGGTGGAAGAACTAAAATATT...........................................................................................2111.0010100000000
................................TTTATGCGGTTGAAGTAG.................................................................................................................1811.0010000000010
..........................................................................................TAAATTAGATTTTCTGCCTGTC...................................................2211.0010000000010
..................................................TAGGTGGAAGAACTAAAATAA............................................................................................2111.0010000001000
...............................TTTTATGCGGTTGAAGTAGT................................................................................................................2011.0010000000010
..........................................................................................TAAATTAGATTTTCTGCCTGCAT..................................................2311.0010000000010
..................................................TAGGTGGAAGAACTAAAATATTTGT........................................................................................2511.0010000001000
..........................................................................................TAAATTAGATTTTCTGCCTGTT...................................................2220.5010000000010
.......................................................................................GAATAAATTAGATTTTCTGCC.......................................................2120.5010000000010
..........................................................................................TAAATTAGATTTTCTGCCTGTCT..................................................2340.2510000000010
..........................................................................................TAAATTAGATTTTCTGA........................................................1740.2510000000010

Generated: 10/20/2015 at 06:49 PM