ID:

dpe_1201

 Coordinate:

scaffold_23:627903-628053 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.9 -5.2 -5.1

Flybase annnotation

CDS [Dper\GL22585-cds]; exon [dper_GLEANR_4822:3]; intron [Dper\GL22585-in]

Repeatable elements

NameClassFamilyStrand
A-richLow_complexityLow_complexity+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACAAAAAAAAAACAGACAAAAACCCCGAACAGAATCAAAAAAGAAAAGAAAACTAAAGCTAAAACTAAAACTAAAAAGAACAAATTGCATAGCAGATGATGTGATCCATGATGATGAAACTGAAAACTGAACTGAAAATCCCCCCCATACCCCATCCCCCCTCTCTGTATGAGATGCACTAATCGGTCTGTCCAATTCTAGGCAAGTCCACGGATTCGAAAATTCCCTACCTTTCGCAGCCTCTGTATGAC
*******************************************************************************************************..........................................((.(((..........((((.....))))..........))).))..*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M021
embryo
 M042
female body
 V042
embryo
 V050
head
 V057
head
.......................................................................................................ATCCATGATGATGAAACTGAAAACTGAAC....................................................................................................................... 29 0 1 343.00 343 341 2 0 0 0
..........................................................................................................CATGATGATGAAACTGAAAACTGAAC....................................................................................................................... 26 0 1 93.00 93 71 18 4 0 0
........................................................................................................TCCATGATGATGAAACTGAAAACTGAAC....................................................................................................................... 28 0 1 12.00 12 12 0 0 0 0
.......................................................................................................ATCCATGATGATGAAACTGAAACCTGAAC....................................................................................................................... 29 1 1 10.00 10 10 0 0 0 0
.......................................................................................................ATCCATGATGATGAAACTGAAA.............................................................................................................................. 22 0 1 8.00 8 4 3 1 0 0
..........................................................................................................CATGATGATGAAACTGAAAACTGAACT...................................................................................................................... 27 0 1 8.00 8 8 0 0 0 0
..........................................................................................................CATGATGATGAAACTGAAAACTGAACTG..................................................................................................................... 28 0 1 5.00 5 5 0 0 0 0
.......................................................................................................ATCCATGATGATTAAACTGAAAACTGAAC....................................................................................................................... 29 1 1 5.00 5 5 0 0 0 0
........................................................................................................TCCATGATGATGAAACTGAAAACTGAACT...................................................................................................................... 29 0 1 4.00 4 4 0 0 0 0
.........................................................................................................CCATGATGATGAAACTGAAAACTGAAC....................................................................................................................... 27 0 1 4.00 4 4 0 0 0 0
...................................................................................................................GAAACTGAAAACTGAACT...................................................................................................................... 18 0 1 3.00 3 3 0 0 0 0
..............................................................................................................ATGATGAAACTGAAAACT........................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0
.........................................................................................................CCATGATGATGAAACTGAAAACTG.......................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0
..............................................................................................................ATGATGAAACTGAAAACTGAAC....................................................................................................................... 22 0 1 2.00 2 2 0 0 0 0
.......................................................................................................ATCCATGATGATGAAACTG................................................................................................................................. 19 0 1 2.00 2 2 0 0 0 0
.......................................................................................................ATCCATGATGATGAAGCTGAAAACTGAAC....................................................................................................................... 29 1 1 2.00 2 2 0 0 0 0
..............................................................................................GATGATGTGATCCATGAT........................................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0
..........................................................................................................CATGATGATGAAACTCAAAACTGAAC....................................................................................................................... 26 1 1 2.00 2 2 0 0 0 0
..........................................................................................................CATGATGATAAAACTGAAAACTGAAC....................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0
.......................................................................................................ATCCATGATGATGAAACTGA................................................................................................................................ 20 0 1 1.00 1 0 0 1 0 0
.........................................................................................................CCATGATGATGAAACTGAAAACT........................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
.........................................................................................................CCATGATGATGAAACTGAAAACTGAACT...................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
.......................................................................................................ATCCATGATGATGAAACTGAAAACT........................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
.......................................................................................................ATCCATGATGATGAAACTGAAAAC............................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0
........................................................................................................TCCATGATGATGAAACTAAAAAC............................................................................................................................ 23 1 1 1.00 1 1 0 0 0 0
.......................................................................................................ATCCATGATGATGAAACTGAAAGCTGAAC....................................................................................................................... 29 1 1 1.00 1 1 0 0 0 0
.......................................................................................................ATCCATGATGATCAAACTGAAAACTGAAC....................................................................................................................... 29 1 1 1.00 1 1 0 0 0 0
..........................................................................................................CATGATGAGGAAACTGAAAACTGAAC....................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0
..........................................................................................................CATGATGATGAAACTGAGAACTGAAC....................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................GAGATGCACTAATCGGTCTGTC........................................................... 22 0 1 1.00 1 1 0 0 0 0
.......................................................................................................ATCCATGATGATGAACCTGAAAACTGAAC....................................................................................................................... 29 1 1 1.00 1 1 0 0 0 0
.......................................................................................................ATCCATGATGATGAAACTGAAAACTG.......................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
.......................................................................................................ATCCATGAGGATGAAACTGAAAACTGAAC....................................................................................................................... 29 1 1 1.00 1 1 0 0 0 0
..........................................................................................................CATGATGATGAAACTGAAAACTGAA........................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0
..........................................................................................................CATGATGATGAAACTGAAAACTGCAC....................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0
..........................................................................................................CATGATGATGAAACTGAAAACT........................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0
..........................................................................................................CATGATGATGAACCTGAAAACTGAAC....................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0
.......................................................................................................ATCCATGATTATGAAACTGAAAACTGAAC....................................................................................................................... 29 1 1 1.00 1 1 0 0 0 0
...........................................................................................GCAGATGATGTGATCCATGATGATGA...................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0
..........................................................................................................CATGATGATGAAACTGAAAACTGGAC....................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0
.......................................................................................................ATCCATGATGACGAAACTGAAAACTGAAC....................................................................................................................... 29 1 1 1.00 1 1 0 0 0 0
..........................................................................................................CATGATGATGAAACCGAAAACTGCAC....................................................................................................................... 26 2 1 1.00 1 1 0 0 0 0
........................................................................................................................TGAACACAGAACTGAGAATCCC............................................................................................................. 22 3 1 1.00 1 0 0 0 0 1
.......................................................................................................ATCCATGATGATGAAACTGAAAATTGAAC....................................................................................................................... 29 1 1 1.00 1 1 0 0 0 0
..........................................................................................................CATGATTATGAAACTGAAAACTGAAC....................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0
........................................................................................................................TGAACACAGAACTGATAATCCC............................................................................................................. 22 3 1 1.00 1 0 0 0 1 0
.......................................................................................................ATCCATGATGATAAAACTGAAAACTGAAC....................................................................................................................... 29 1 1 1.00 1 1 0 0 0 0
..............GACAAGAACCCGGAACAG........................................................................................................................................................................................................................... 18 2 3 0.67 2 0 2 0 0 0
.............TGACAAGAACCCGGAACAG........................................................................................................................................................................................................................... 19 3 20 0.15 3 0 3 0 0 0
..........................................................CTATAACTAAAAGTAAAATGAA........................................................................................................................................................................... 22 3 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

TGTTTTTTTTTTGTCTGTTTTTGGGGCTTGTCTTAGTTTTTTCTTTTCTTTTGATTTCGATTTTGATTTTGATTTTTCTTGTTTAACGTATCGTCTACTACACTAGGTACTACTACTTTGACTTTTGACTTGACTTTTAGGGGGGGTATGGGGTAGGGGGGAGAGACATACTCTACGTGATTAGCCAGACAGGTTAAGATCCGTTCAGGTGCCTAAGCTTTTAAGGGATGGAAAGCGTCGGAGACATACTG
***********************************************************..........................................((.(((..........((((.....))))..........))).))..******************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V057
head
 V111
male body
........................................................................................................................................TTAGGGGGGGTATGGGGTT................................................................................................ 19 1 2 0.50 1 1 0
..........................................................................................................................................AGGGGGCGTATGAGGTAG............................................................................................... 18 2 9 0.11 1 0 1
...............................................................................................................................................TGGTATGGAGGAGGGGGGAG........................................................................................ 20 3 20 0.05 1 1 0
.........................................................................................................................................TAGGGGGGGTCTGGGGTATC.............................................................................................. 20 3 20 0.05 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_23:627853-628103 + dpe_1201 ACAAAAAAAAAA---------------------CAGACAAAAACCCC---GAACAGAATCAAAAAAGAAAAG--------A------AAA-----------CTA-------AAGCTAAAACTAAAAC---TAA-----AAAG--------------------------AACAAA-----------------------TTGCATA--GCAGATGA---TGTGATCCA-----TGATGATGAAACTGAAAACTGAAC-------TGAAAATCCCCCCCATACCCCATCCCC--------------------------------------------CC-TCT--CTGTATGAGATGCACTAATCGGTCTGTCCA-ATTCTAGGCAAGTCCACGGATTCGAAAATTCCC---TACCTTTCGCAGCCTCTGTATGAC
dp5 XR_group3a:597765-598015 + dps_2894 ACAAAAAAAAAA---------------------CAGACAAAAACCCC---GAACAGAATCAAAAAAGAAAAG--------A------AAA-----------CTA-------AAGCTAAAACTAAAAC---TAA-----AAAG--------------------------AACAAA-----------------------TTGCATA--GCAGATGA---TGTGATCCA-----TGATGATGAAACTGAAAACTGAAC-------TGAAAATCCCCCCCATACCCCATCCCC--------------------------------------------CC-TCT--CTGTATGAGATGCACTAATCGGTCTGTCCA-ATTCTAGGCAAGTCCACGGATTCGAAAATTCCC---TACCTTTCGCAGCCTCTGTATGAC
droWil2 scf2_1100000004511:2437811-2438041 + ATTTTGA-GA-AAAAAAACCCACAAACAAAAAACA--AAAAAACCAA--------------------G---------------------------------------------------------------------------------------------------------------------------------AT-GATA--AA------TGAT--GATCGATCTACTAC----------------------TACTTCTACTA-------CTAC--TCTACT-AC-TACTA--CTACAAAAAAAAAAAAAAAAAAAAAAAACAAATACTAA-TCCTAACGTATGAGTTGGACTAATCTCTATTCCCA-ATTCTAGGCAAGTCAGCGGACACGAAAGTTCCCCCATACCTTTCGCAGCCTCTGTACGAT
droVir3 scaffold_13049:3642241-3642459 - dvi_18193 GCTGTTGCGA-G---------------------TCGACACAGACCTC-----AT--------------------------A------AAA----TCA------AAACGAAT----C-----------AAAGAAAAAAAAAA---------------GTCGTATTCA-AACCAAATTGCT--TA--------AACGATTCGCCTAGCGC------TGATCGGTTCGA-----TGA----------------------------TGAGC-------CCAT--T-----GT---------------------------------------------CA-TCATATCATATGAGATACACTAATCTGTTCTCCCA-ATTCTAGGCAAGTCAGCGGACACGAAAATTCCC---TACCTTTCGCAGCCACTGTATGAT
droMoj3 scaffold_6654:406124-406298 + TCAAA-----------------------------------------------------------------------------------------TCA---AACTAAAAAGA----A-----------AAGAGA-----A--------------------AAATGCTTAAACG-A-----------------------TCGCTTAACCC------TGATC-GGTT-----------------------TACTGAA--------TGAGC-------CCAT--T-----ATC--------------------------------------------CAAACA--TCGTATGAGATGCACTAATCTGTTTTCCCAAATTCTAGGCAAGTCGGCGGATACGAAAATTCCC---TACCTTTCGCAGCCATTGTACGAT
droGri2 scaffold_15110:7791222-7791431 - AATGAATCAAAA---------------------C-------------AA-----------------------------------------------------AAAACAAAT----C-----------AAACTAA---AAAAGT---------------CGTATTCA-AAGCAAATTGCAAATA-------AAATCGATCGCATA--GC------TGATC-GGTT----TGATGA----------------------TGATGTTGGGC-------CCAT--TTGCCC-CC--------------------------------------------CG-TCCCATCGTATGAGATGCACTAATCTGTCTTCCCA-ATTCTAGGCAAGTCAGCGGATACGAAAATTCCC---TACCTTTCGCAGCCACTGTATGAT
droAna3 scaffold_13337:1950335-1950546 + dan_2352 CTAAAAAAAAAA---------------------T-------------GA------------TAATCGAATGAAAAACTAAAAAACCAAAATCAATCA---AAAGA--AAAT----G-----------AAATGA-----AAAAT------------------------------------------------------------A--GA---TGATGAT--GATC-----------------------AA-TGA-T-------CGAAC--------------------CACTG---ATCTAC--------------------GAGATCAGAGCTTA-TCC--AACCACGAGATACACTAATCCCTCTTCCCA-ATTCTAGGCAAGTCCACGGATTCGAAAATTCCC---TACCTTTCGCAGCCTCTGTATGAC
droBip1 scf7180000396569:1993542-1993717 + ATGAAAAAAAAA---------------------------------------AACG--------------------------------AAATCAAT--------------------C-----------AAAAGA-----AA----------------------------------------------------------TGTTTAAAGC------TGAT--GATC-----------------------A-CTGA---------TGAAC--------------------CACTG---ATCTAC--------------------GCGATCAGAGCTAA-TCC--GTCCACGAGATGCACTAATCCCTCTTCCCA-ATTCTAGGCAAGTCCACGGATTCGAAAATTCCC---TACCTTTCGCAGCCTCTGTATGAC
droKik1 scf7180000302510:1005512-1005717 + CCAAAAAAAAAA---------------------T------------------------------------------------------TT----TAA---ATTGAAAAAG------------------AAAGC-----AAAGTCAAACC----CGAA--AAATTCC------------C--CAAAAACAGAAACCAATTGCATAGAGC------TGAT--GA--------------------------ACTCAAG-------CGAAC----------TACTCCGCCCCC--------------------------------------------CTTCCT--CAGTATGAGATGCACTAATCCCTCTTCCCA-ATTCTAGGCAAGTCCACGGATTCGAAAATTCCC---TACCTTTCGCAGCCCCTGTACGAC
droFic1 scf7180000454113:578941-579154 + ACAGAAAGAAAA---------------------C-------------AAAAAACAAAATCAAAAATTGAAAG--------A------AAA-----------CCAAACAAGT----C-----------AAATGA-----AAAGTC----------GAATCGAGTCCC-AAACAAA-----------------------TTGCATA--GC------TGAT--GATC-----------------------AACTGAAA------CTGAAC--------------------TCCCC---A-------------------------------------CTTTCC--CAGTATGAGATGCACTAATCCCTCTTCCCA-ATTCTAGGCAAGTCCACGGATTCGAAAATTCCC---TACCTTTCGCAGCCGTTGTACGAT
droEle1 scf7180000491249:4094098-4094281 + AAAGAAAG------------------------------------------------------------AAAG--------A------AAA-----------TCAAACAAGT----C-----------AAATGAA---AAAAGT---------------CGAATCCCAAAACAAA-----------------------TTGCATA--GC------TGAT--GATC-----------------------AACTGAAC-------TGAAC--------------------TCCTC-----------------------------------------CCTCCC--CACTATGAGATGCACTAATCCCTCTTCCCA-ATTCTAGGCAAGTCCACGGATTCGAAAATTCCC---TACCTTTCGCAGCCCCTGTACGAC
droRho1 scf7180000776850:456242-456424 + CCAAAAAAAAAA-------------------------------------------------------GAAAG--------A------AAA-----------TCGAACAAGT----C-----------AAATGA-----AAAGT---------------CGAATCCC-AAACAAA-----------------------TTGCATA--GC------TGAT--GATC-----------------------AACTGAAC-------TGAAC--------------------TC--------------------------------------------CCTCCC--CAGTATGAGATGCACTAATCCCTCTTCCCA-ATTCTAGGCAAGTCCACGGATTCGAAAATTCCC---TACCTTTCGCAGCCCCTGTATGAC
droBia1 scf7180000300910:1612538-1612729 - ACAGAAAAAG----------------------------------------------------------AA-------------------A----TAA---AACGAACAAGT----C-----------AAATGA-----AAAGTC----------GAATCGAATCCC-AAACAAA-----------------------TTGCATA--GC------TGAT--GATCGA-----TG--------------AACTGAAC-TGAACATGAA----------------------C--------------------------------------------CCTCCC--CAGTATGAGATGCACTAATCCCTCTTCCCA-ATTCTAGGCAAGTCCACGGATTCGAAAATTCCC---TACCTTTCGCAGCCCCTGTACGAC
droTak1 scf7180000415095:314697-314864 + GAAAAA---------------------------------------------------------------------------------------------------ACAAGT----C-----------AG---------------------------ATCGAGTCCC-AAACAAA-----------------------TTGCATA--GC------TGAT--GATC-----------------------AACTGAAAATGAAACTGAAA--------------------ACCCC---C-------------------------------------CATTCC--CAGTATGAGATGCACTAATCCCTCTTCCCA-ATTCTAGGCAAGTCCACGGATTCGAAAATTCCC---TACCTTTCGCAGCCCCTGTACGAC
droEug1 scf7180000409007:318488-318669 - ATGAAAGA-------------------------------------------------------------------------------AAA----TCA---ATCGAACAAGT----C-----------AAATGA-----AAAGTC----------GAATCGAATCCC-AAACAAA-----------------------TTGCATA--GC------TGAT--GATC-----------------------AACTGAAC-------TGAAT--------------------TC--------------------------------------------CCTCCC--CGTTATGAGATGCACTAATCCCTCTTCCCA-ATTCTAGGCAAGTCCACGGATTCGAAAATTCCC---TACCTTTCGCAGCCTCTGTATGAC
dm3 chr3L:1499288-1499478 - ATGAAA-----------------------------------------------------------------------------------ATCAATCAAAAATCGAACAAGT----C-----------AAATGAA---AAAAGTCGAA-----TCGAATCGAATCCC-AATCAAA-----------------------TTGCATA--GC------TGAT--GATC-----------------------AACTGAAA-------CGAAT--------------------CC--------------------------------------------CC-TCC--CACTATAAGATGCACTAATCCCTCTTCCCA-ATTCTAGGCAAGTCCACGGATTCGAAAATTCCC---TACCTTTCGCAGCCCCTGTACGAC
droSim2 3l:1416871-1417061 - ATGAAA-----------------------------------------------------------------------------------ATCAATCA---ATCGAACAAGT----C-----------AAATGA-----AAAGTCGAATCGAATCGAATCGAATCCC-AATCAAA-----------------------TTGCATA--GC------TGAT--GATC-----------------------AACTGAAA-------CGAAC--------------------CC--------------------------------------------CC-TCC--CACTATAAGATGCACTAATCCCTCTTCCCA-ATTCTAGGCAAGTCCACGGATTCGAAAATTCCC---TACCTTTCGCAGCCCCTGTACGAC
droSec2 scaffold_2:1533199-1533400 - ACAAAGAAAA-----------------------C----------CAA--------------------GACTG--------A------AAATCAATCA---ATCGAACAAGT----C-----------AAATGA-----AAAGTCGAA-----TCGAATCGAATCCC-AATCAAA-----------------------TTGCATA--GC------TGAT--GATC-----------------------AACTGAAA-------CGAAC--------------------CC--------------------------------------------CC-TCC--CACTATAAGATGCACTAATCCCTCTTCCCA-ATTCTAGGCAAGTCCACGGATTCGAAAATTCCC---TACCTTTCGCAGCCCCTGTACGAC
droYak3 3L:1456030-1456225 - ACGAAAGAAA-------------------------------------------------------------G--------A------ATA----TCA---ATCGAACAAGT----C-----------AAATCAAATAAAAAGTCAAA-----TCGAATCGAATCCCAAAACAAA-----------------------TTGCATA--GC------TGAT--GATC-----------------------AACTGAAC-------CGAAA--------------------CC--------------------------------------------CC-TCC--CAGTATAAGATGCACTAATCCCTCTTCCCA-ATTCTAGGCAAGTCCACGGATTCGAAAATTCCC---TACCTTTCGCAGCCCCTGTACGAC
droEre2 scaffold_4784:1483403-1483576 - ACGAAAGA-------------------------------------------------------------------------------ATA----TCA---ATCGAACAAGT----C-----------AAAT----------------------CGAATCGAATCCC-AAACAAA-----------------------TTGCATA--GC------TGAT--GATC-----------------------AACTGAAC-------CGAAA--------------------CC--------------------------------------------CC-TCC--CAGTATAAGATGCACTAATCCCTCTTCCCA-ATTCTAGGCAAGTCCACGGATTCGAAAATTCCC---TACCTTTCGCAGCCCCTGTACGAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
ACAAAAAAAAAA---------------------CAGACAAAAACCCC---GAACAGAATCAAAAAAGAAAAG--------A------AAA-----------CTA-------AAGCTAAAACTAAAAC---TAA-----AAAG--------------------------AACAAA-----------------------TTGCATA--GCAGATGA---TGTGATCCA-----TGATGATGAAACTGAAAACTGAAC-------TGAAAATCCCCCCCATACCCCATCCCC--------------------------------------------CC-TCT--CTGTATGAGATGCACTAATCGGTCTGTCCA-ATTCTAGGCAAGTCCACGGATTCGAAAATTCCC---TACCTTTCGCAGCCTCTGTATGACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................................................ATCCA-----TGATGATGAAACTGAAAACTGAAC-------..........................................................................................................................................................................291343.0034334120000
................................................................................................................................................................................................................................CA-----TGATGATGAAACTGAAAACTGAAC-------..........................................................................................................................................................................26193.009371184000
..............................................................................................................................................................................................................................TCCA-----TGATGATGAAACTGAAAACTGAAC-------..........................................................................................................................................................................28112.00121200000
.............................................................................................................................................................................................................................ATCCA-----TGATGATGAAACTGAAA........................................................................................................................................................................................2218.008431000
................................................................................................................................................................................................................................CA-----TGATGATGAAACTGAAAACTGAAC-------T.........................................................................................................................................................................2718.008800000
................................................................................................................................................................................................................................CA-----TGATGATGAAACTGAAAACTGAAC-------TG........................................................................................................................................................................2815.005500000
..............................................................................................................................................................................................................................TCCA-----TGATGATGAAACTGAAAACTGAAC-------T.........................................................................................................................................................................2914.004400000
...............................................................................................................................................................................................................................CCA-----TGATGATGAAACTGAAAACTGAAC-------..........................................................................................................................................................................2714.004400000
..............................................................................................................................................................................................................................................GAAACTGAAAACTGAAC-------T.........................................................................................................................................................................1813.003300000
.........................................................................................................................................................................................................................................ATGATGAAACTGAAAACT.....................................................................................................................................................................................1812.002200000
...............................................................................................................................................................................................................................CCA-----TGATGATGAAACTGAAAACTG....................................................................................................................................................................................2412.002200000
.........................................................................................................................................................................................................................................ATGATGAAACTGAAAACTGAAC-------..........................................................................................................................................................................2212.002200000
.............................................................................................................................................................................................................................ATCCA-----TGATGATGAAACTG...........................................................................................................................................................................................1912.002200000
.................................................................................................................................................................................................................GATGA---TGTGATCCA-----TGAT.....................................................................................................................................................................................................1812.002200000
.............................................................................................................................................................................................................................ATCCA-----TGATGATGAAACTGA..........................................................................................................................................................................................2011.001001000
...............................................................................................................................................................................................................................CCA-----TGATGATGAAACTGAAAACT.....................................................................................................................................................................................2311.001100000
...............................................................................................................................................................................................................................CCA-----TGATGATGAAACTGAAAACTGAAC-------T.........................................................................................................................................................................2811.001100000
.............................................................................................................................................................................................................................ATCCA-----TGATGATGAAACTGAAAACT.....................................................................................................................................................................................2511.001100000
.............................................................................................................................................................................................................................ATCCA-----TGATGATGAAACTGAAAAC......................................................................................................................................................................................2411.001100000
...........................................................................................................................................................................................................................................................................................................................................................GAGATGCACTAATCGGTCTGTC...............................................................2211.001100000
.............................................................................................................................................................................................................................ATCCA-----TGATGATGAAACTGAAAACTG....................................................................................................................................................................................2611.001100000
................................................................................................................................................................................................................................CA-----TGATGATGAAACTGAAAACTGAA..................................................................................................................................................................................2511.001010000
................................................................................................................................................................................................................................CA-----TGATGATGAAACTGAAAACT.....................................................................................................................................................................................2211.001100000
..............................................................................................................................................................................................................GCAGATGA---TGTGATCCA-----TGATGATGA................................................................................................................................................................................................2611.001010000
dp5
ACAAAAAAAAAA---------------------CAGACAAAAACCCC---GAACAGAATCAAAAAAGAAAAG--------A------AAA-----------CTA-------AAGCTAAAACTAAAAC---TAA-----AAAG--------------------------AACAAA-----------------------TTGCATA--GCAGATGA---TGTGATCCA-----TGATGATGAAACTGAAAACTGAAC-------TGAAAATCCCCCCCATACCCCATCCCC--------------------------------------------CC-TCT--CTGTATGAGATGCACTAATCGGTCTGTCCA-ATTCTAGGCAAGTCCACGGATTCGAAAATTCCC---TACCTTTCGCAGCCTCTGTATGACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................................................CA-----TGATGATGAAACTGAAAACTGAAC-------..........................................................................................................................................................................2611375.00137511241684160167030784
.............................................................................................................................................................................................................................ATCCA-----TGATGATGAAACTGAAAACTGAAC-------..........................................................................................................................................................................291363.00363265214900073630
.............................................................................................................................................................................................................................ATCCA-----TGATGATGAAACTGAAA........................................................................................................................................................................................22144.0044019150400510
................................................................................................................................................................................................................................CA-----TGATGATGAAACTGAAAACTGAAC-------T.........................................................................................................................................................................27133.003318601001421
...............................................................................................................................................................................................................................CCA-----TGATGATGAAACTGAAAACTGAAC-------..........................................................................................................................................................................27128.002805300007130
..............................................................................................................................................................................................................................TCCA-----TGATGATGAAACTGAAAACTGAAC-------..........................................................................................................................................................................28114.00140670000001
................................................................................................................................................................................................................................CA-----TGATGATGAAACTGAAAACTGAAC-------C.........................................................................................................................................................................27114.001400100000130
.................................................................................................................................................................................................................................A-----TGATGATGAAACTGAAAACTGAAC-------..........................................................................................................................................................................25114.001401110100100
................................................................................................................................................................................................................................CA-----TGATGATGAAACTGAAAACTGAAC-------A.........................................................................................................................................................................2718.0080100100510
..............................................................................................................................................................................................................GCAGATGA---TGTGATCCA-----TGATGATG.................................................................................................................................................................................................2516.0060110400000
................................................................................................................................................................................................................................CA-----TGATGATGAAACTGAAAACTGAA..................................................................................................................................................................................2516.0060110000220
............................................................................................................................................................................................................................GATCCA-----TGATGATGAAACTGAAA........................................................................................................................................................................................2314.0040310000000
..............................................................................................................................................................................................................GCAGATGA---TGTGATCCA-----TGATGA...................................................................................................................................................................................................2314.0040110200000
................................................................................................................................................................................................................................CA-----TGATGATGAAACTGAAA........................................................................................................................................................................................1913.0030100200000
................................................................................................................................................................................................................................CA-----TGATGATGAAACTGAAAACTGAAC-------TG........................................................................................................................................................................2813.0030210000000
.........................................................................................................................................................................................................................................ATGATGAAACTGAAAACTGAAC-------..........................................................................................................................................................................2212.0020200000000
...............................................................................................................................................................................................................................CCA-----TGATGATGAAACTGAAA........................................................................................................................................................................................2012.0020110000000
.......................................................................................................................................................................................................................................TGATGATGAAACTGAAAACTGAAC-------..........................................................................................................................................................................2412.0020200000000
...........................................................................................................................................................................................................................TGATCCA-----TGATGATGAAACTGAAA........................................................................................................................................................................................2412.0020110000000
............................................................................................................................................................................................................................GATCCA-----TGATGATGAAACTGAAAACTG....................................................................................................................................................................................2711.0010100000000
................................................................................................................................................................................................................................CA-----TGATGATGAAACTGAAAACTGAAT-------..........................................................................................................................................................................2611.0010000000001
...............................................................................................................................................................................................................CAGATGA---TGTGATCCA-----TGATGATG.................................................................................................................................................................................................2411.0010100000000
...............................................................................................................................................................................................................................CCA-----TGATGATGAAACTGAAAACTGAAC-------T.........................................................................................................................................................................2811.0010010000000
............................................................................................................................................................................................................................................................................................................................................................................................................AAAATTCCC---TACCTTTCGCAGCCTCC.......2611.0010010000000
............................................................................................................................................................................................................................GATCCA-----TGATGATGAAACTGAAAAA......................................................................................................................................................................................2511.0010100000000
..............................................................................................................................................................................................................................TCCA-----TGATGATGAAACTGAAAACTGAAC-------T.........................................................................................................................................................................2911.0010010000000
.............................................................................................................................................................................................................................ATCCA-----TGATGATGAAACTGAAAACTGAAA-------..........................................................................................................................................................................2911.0010010000000
..............................................................................................................................................................................................................GCAGATGA---TGTGATCCA-----TGATGAT..................................................................................................................................................................................................2411.0010000100000
...............................................................................................................................................................................................................................CCA-----TGATGATGAAACTGAAAACTGAA..................................................................................................................................................................................2611.0010000000100
.......................................................................................................................................................................................................................................................................................................................................................GTATGAGATGCACTAATCGGT....................................................................2111.0010100000000
.................................................................................................................................................................................................................................A-----TGATGATGAAACTGAAAACTGAAC-------T.........................................................................................................................................................................2611.0010100000000
.............................................................................................................................................................................................................................ATCCA-----TGATGATGAAACTGAAAAC......................................................................................................................................................................................2411.0010010000000
.................................................................................................................................................................................................................................A-----TGATGATGAAACTGAAAACTGAAC-------A.........................................................................................................................................................................2611.0010000000010
............................................................................................................................................................................................................................GATCCA-----TGATGATGAAACTGAAAACT.....................................................................................................................................................................................2611.0010010000000
..............................................................................................................................................................................................................................TCCA-----TGATGATGAAACTGAAA........................................................................................................................................................................................2111.0010010000000
.........................................................................................................................................................................................................................................ATGATGAAACTGAAAACTGAAC-------TGA.......................................................................................................................................................................2511.0010000100000
.................................................................................................................................................................................................................................A-----TGATGATGAAACTGAAAACTGAAC-------TG........................................................................................................................................................................2711.0010100000000
................................................................................................................................................................................................................................CA-----TGATGATGAAACTGAAAACTGAAC-------CT........................................................................................................................................................................2811.0010000000100
............................................................................................................................................................................................................................................ATGAAACTGAAAACTGAAC-------..........................................................................................................................................................................1920.5010100000000
...............................................................................................................................................................................................................................................AAACTGAAAACTGAAC-------..........................................................................................................................................................................1660.1710000000010
droWil2
ATTTTGA-GA-AAAAAAACCCACAAACAAAAAACA--AAAAAACCAA--------------------G---------------------------------------------------------------------------------------------------------------------------------AT-GATA--AA------TGAT--GATCGATCTACTAC----------------------TACTTCTACTA-------CTAC--TCTACT-AC-TACTA--CTACAAAAAAAAAAAAAAAAAAAAAAAACAAATACTAA-TCCTAACGTATGAGTTGGACTAATCTCTATTCCCA-ATTCTAGGCAAGTCAGCGGACACGAAAGTTCCCCCATACCTTTCGCAGCCTCTGTACGATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................................................................................................................................................................................................................................................................TCCCA-ATTCTAGGCAAGTCAGCGGA........................................2511.00100100
...........................................................................................................................................................................................................................................................................................................................................................................................GCAAGTCAGCGGACACGAAA.................................2011.00100010
.............................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAC..........................................................................................................25200.05101000
droVir3
GCTGTTGCGA-G---------------------TCGACACAGACCTC-----AT--------------------------A------AAA----TCA------AAACGAAT----C-----------AAAGAAAAAAAAAA---------------GTCGTATTCA-AACCAAATTGCT--TA--------AACGATTCGCCTAGCGC------TGATCGGTTCGA-----TGA----------------------------TGAGC-------CCAT--T-----GT---------------------------------------------CA-TCATATCATATGAGATACACTAATCTGTTCTCCCA-ATTCTAGGCAAGTCAGCGGACACGAAAATTCCC---TACCTTTCGCAGCCACTGTATGATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................TTGCT--TA--------AACGATTCGCCTAG...................................................................................................................................................................................................................................2112.002000000000000000000000000000000000000000000000000000000000000002
.....................................................................................................................................................................A-AACCAAATTGCT--TA--------AACGA............................................................................................................................................................................................................................................2011.001000000000000000100000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................C---TACCTTTCGCAGCCACTGT.....2011.001000000000000000000000000000000000000000000000000000000000001000
........................................................................................................................................................................................................................................GA----------------------------TGAGC-------CCAT--T-----GT---------------------------------------------CA-TCATA...........................................................................................2111.001000000000000000000100000000000000000000000000000000000000000000
..................................................................................................................................................................................T--TA--------AACGATTCGCCTAGCGC------TGAT......................................................................................................................................................................................................................2411.001000000000000001000000000000000000000000000000000000000000000000
...........G---------------------TCGACACAGACCTC-----AT--------------------------A------AA.......................................................................................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................TAGCGC------TGATCGGTTCGA-----TGA----------------------------TG........................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................CGA-----TGA----------------------------TGAGC-------CCAT--T-----GT---------------------------------------------CA-T...............................................................................................2111.001000000000000000000000100000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................GCGGACACGAAAATTCCC---TACC....................2211.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................CTAGCGC------TGATCGGTTCGA-----TG.......................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................................ATCGGTTCGA-----TGA----------------------------TGAGC-------CCAT--T-----GT---------------------------------------------C..................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................A-AACCAAATTGCT--TA--------AACG.............................................................................................................................................................................................................................................1911.001000000000000000000000100000000000000000000000000000000000000000
.........................................GACCTC-----AT--------------------------A------AAA----TCA------AAAC.....................................................................................................................................................................................................................................................................................................................................1920.501001000000000000000000000000000000000000000000000000000000000000
droMoj3
TCAAA-----------------------------------------------------------------------------------------TCA---AACTAAAAAGA----A-----------AAGAGA-----A--------------------AAATGCTTAAACG-A-----------------------TCGCTTAACCC------TGATC-GGTT-----------------------TACTGAA--------TGAGC-------CCAT--T-----ATC--------------------------------------------CAAACA--TCGTATGAGATGCACTAATCTGTTTTCCCAAATTCTAGGCAAGTCGGCGGATACGAAAATTCCC---TACCTTTCGCAGCCATTGTACGATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................................................................................................................GGTT-----------------------TACTGAA--------TGAGC-------CC............................................................................................................................................................1811.001100000
droGri2
AATGAATCAAAA---------------------C-------------AA-----------------------------------------------------AAAACAAAT----C-----------AAACTAA---AAAAGT---------------CGTATTCA-AAGCAAATTGCAAATA-------AAATCGATCGCATA--GC------TGATC-GGTT----TGATGA----------------------TGATGTTGGGC-------CCAT--TTGCCC-CC--------------------------------------------CG-TCCCATCGTATGAGATGCACTAATCTGTCTTCCCA-ATTCTAGGCAAGTCAGCGGATACGAAAATTCCC---TACCTTTCGCAGCCACTGTATGATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
CTAAAAAAAAAA---------------------T-------------GA------------TAATCGAATGAAAAACTAAAAAACCAAAATCAATCA---AAAGA--AAAT----G-----------AAATGA-----AAAAT------------------------------------------------------------A--GA---TGATGAT--GATC-----------------------AA-TGA-T-------CGAAC--------------------CACTG---ATCTAC--------------------GAGATCAGAGCTTA-TCC--AACCACGAGATACACTAATCCCTCTTCCCA-ATTCTAGGCAAGTCCACGGATTCGAAAATTCCC---TACCTTTCGCAGCCTCTGTATGACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................ATTCCC---TACCTTTCGCAGCCT.........2111.001100000
droBip1
ATGAAAAAAAAA---------------------------------------AACG--------------------------------AAATCAAT--------------------C-----------AAAAGA-----AA----------------------------------------------------------TGTTTAAAGC------TGAT--GATC-----------------------A-CTGA---------TGAAC--------------------CACTG---ATCTAC--------------------GCGATCAGAGCTAA-TCC--GTCCACGAGATGCACTAATCCCTCTTCCCA-ATTCTAGGCAAGTCCACGGATTCGAAAATTCCC---TACCTTTCGCAGCCTCTGTATGACSizeHit CountTotal NormTotal
No Reads
droKik1
CCAAAAAAAAAA---------------------T------------------------------------------------------TT----TAA---ATTGAAAAAG------------------AAAGC-----AAAGTCAAACC----CGAA--AAATTCC------------C--CAAAAACAGAAACCAATTGCATAGAGC------TGAT--GA--------------------------ACTCAAG-------CGAAC----------TACTCCGCCCCC--------------------------------------------CTTCCT--CAGTATGAGATGCACTAATCCCTCTTCCCA-ATTCTAGGCAAGTCCACGGATTCGAAAATTCCC---TACCTTTCGCAGCCCCTGTACGACSizeHit CountTotal NormTotal
No Reads
droFic1
ACAGAAAGAAAA---------------------C-------------AAAAAACAAAATCAAAAATTGAAAG--------A------AAA-----------CCAAACAAGT----C-----------AAATGA-----AAAGTC----------GAATCGAGTCCC-AAACAAA-----------------------TTGCATA--GC------TGAT--GATC-----------------------AACTGAAA------CTGAAC--------------------TCCCC---A-------------------------------------CTTTCC--CAGTATGAGATGCACTAATCCCTCTTCCCA-ATTCTAGGCAAGTCCACGGATTCGAAAATTCCC---TACCTTTCGCAGCCGTTGTACGATSizeHit CountTotal NormTotal
No Reads
droEle1
AAAGAAAG------------------------------------------------------------AAAG--------A------AAA-----------TCAAACAAGT----C-----------AAATGAA---AAAAGT---------------CGAATCCCAAAACAAA-----------------------TTGCATA--GC------TGAT--GATC-----------------------AACTGAAC-------TGAAC--------------------TCCTC-----------------------------------------CCTCCC--CACTATGAGATGCACTAATCCCTCTTCCCA-ATTCTAGGCAAGTCCACGGATTCGAAAATTCCC---TACCTTTCGCAGCCCCTGTACGACSizeHit CountTotal NormTotal
No Reads
droRho1
CCAAAAAAAAAA-------------------------------------------------------GAAAG--------A------AAA-----------TCGAACAAGT----C-----------AAATGA-----AAAGT---------------CGAATCCC-AAACAAA-----------------------TTGCATA--GC------TGAT--GATC-----------------------AACTGAAC-------TGAAC--------------------TC--------------------------------------------CCTCCC--CAGTATGAGATGCACTAATCCCTCTTCCCA-ATTCTAGGCAAGTCCACGGATTCGAAAATTCCC---TACCTTTCGCAGCCCCTGTATGACSizeHit CountTotal NormTotal
No Reads
droBia1
ACAGAAAAAG----------------------------------------------------------AA-------------------A----TAA---AACGAACAAGT----C-----------AAATGA-----AAAGTC----------GAATCGAATCCC-AAACAAA-----------------------TTGCATA--GC------TGAT--GATCGA-----TG--------------AACTGAAC-TGAACATGAA----------------------C--------------------------------------------CCTCCC--CAGTATGAGATGCACTAATCCCTCTTCCCA-ATTCTAGGCAAGTCCACGGATTCGAAAATTCCC---TACCTTTCGCAGCCCCTGTACGACSizeHit CountTotal NormTotal
No Reads
droTak1
GAAAAA---------------------------------------------------------------------------------------------------ACAAGT----C-----------AG---------------------------ATCGAGTCCC-AAACAAA-----------------------TTGCATA--GC------TGAT--GATC-----------------------AACTGAAAATGAAACTGAAA--------------------ACCCC---C-------------------------------------CATTCC--CAGTATGAGATGCACTAATCCCTCTTCCCA-ATTCTAGGCAAGTCCACGGATTCGAAAATTCCC---TACCTTTCGCAGCCCCTGTACGACSizeHit CountTotal NormTotal
No Reads
droEug1
ATGAAAGA-------------------------------------------------------------------------------AAA----TCA---ATCGAACAAGT----C-----------AAATGA-----AAAGTC----------GAATCGAATCCC-AAACAAA-----------------------TTGCATA--GC------TGAT--GATC-----------------------AACTGAAC-------TGAAT--------------------TC--------------------------------------------CCTCCC--CGTTATGAGATGCACTAATCCCTCTTCCCA-ATTCTAGGCAAGTCCACGGATTCGAAAATTCCC---TACCTTTCGCAGCCTCTGTATGACSizeHit CountTotal NormTotal
No Reads
dm3
ATGAAA-----------------------------------------------------------------------------------ATCAATCAAAAATCGAACAAGT----C-----------AAATGAA---AAAAGTCGAA-----TCGAATCGAATCCC-AATCAAA-----------------------TTGCATA--GC------TGAT--GATC-----------------------AACTGAAA-------CGAAT--------------------CC--------------------------------------------CC-TCC--CACTATAAGATGCACTAATCCCTCTTCCCA-ATTCTAGGCAAGTCCACGGATTCGAAAATTCCC---TACCTTTCGCAGCCCCTGTACGACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................GAT--GATC-----------------------AACTGAAA-------CGAA......................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................TCCACGGATTCGAAAATTCCC---TACC....................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................TA--GC------TGAT--GATC-----------------------AACTGAAA-------CGAAT--------------------CC--------------------------------------------CC-................................................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................TCCC-AATCAAA-----------------------TTGCATA--GC------TGAT--GA..................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................AA-----------------------TTGCATA--GC------TGAT--GATC-----------------------AACTGA...................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................T--------------------CC--------------------------------------------CC-TCC--CACTATAAGATGCACTAA.........................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................................................................................................................TCCCA-ATTCTAGGCAAGTCCACGGA........................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................A--GC------TGAT--GATC-----------------------AACTGAAA-------CGAAT--------------------.................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................AAGTCCACGGATTCGAAAATTC.............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................TCTTCCCA-ATTCTAGGCAAGTCCACG..........................................2611.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................TCGAATCCC-AATCAAA-----------------------TTGCATA--GC------T.........................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................TCCACGGATTCGAAAATTCCC---TACCTTTC................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................AAA-----------------------TTGCATA--GC------TGAT--GA..................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................TTCGAAAATTCCC---TACCTTTCGCAGC...........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................AATCAAA-----------------------TTGCATA--GC------TGA.......................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
................................................................................................................................................................AATCCC-AATCAAA-----------------------TTGCATA--..................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................TCGAATCCC-AATCAAA-----------------------TTGCATA--GC------TGA.......................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................TAGGCAAGTCCACGGATTCGAAAAT...............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................................................................................................AT--------------------CC--------------------------------------------CC-TCC--CACTATAAG..................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................TCCCA-ATTCTAGGCAAGTCCACGG.........................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TCTAGGCAAGTCCACGGATTC.....................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................AGTCGAA-----TCGAATCGAATCC...........................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................CCCTCTTCCCA-ATTCTAGGCAAGTCCACG..........................................2911.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................CC-TCC--CACTATAAGATGCACTAAT........................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TCTAGGCAAGTCCACGGATTCGAAAATT..............................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................AAA-----------------------TTGCATA--GC------TGAT--GATC-----------------------.........................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................CTAGGCAAGTCCACGGATTCGAAAA................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................A--GC------TGAT--GATC-----------------------AACTGAAA-------CG........................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
droSim2
ATGAAA-----------------------------------------------------------------------------------ATCAATCA---ATCGAACAAGT----C-----------AAATGA-----AAAGTCGAATCGAATCGAATCGAATCCC-AATCAAA-----------------------TTGCATA--GC------TGAT--GATC-----------------------AACTGAAA-------CGAAC--------------------CC--------------------------------------------CC-TCC--CACTATAAGATGCACTAATCCCTCTTCCCA-ATTCTAGGCAAGTCCACGGATTCGAAAATTCCC---TACCTTTCGCAGCCCCTGTACGACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................................................TTCTAGGCAAGTCCACGGATTCGAAAATT..............................2911.00100000010000000000
...........................................................................................................................................................................................................A--GC------TGAT--GATC-----------------------AACTGAAA-------CGAAC--------------------.................................................................................................................................................2411.00100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................GTCCACGGATTCGAAAATTCCC---TACC....................2611.00100000001000000000
droSec2
ACAAAGAAAA-----------------------C----------CAA--------------------GACTG--------A------AAATCAATCA---ATCGAACAAGT----C-----------AAATGA-----AAAGTCGAA-----TCGAATCGAATCCC-AATCAAA-----------------------TTGCATA--GC------TGAT--GATC-----------------------AACTGAAA-------CGAAC--------------------CC--------------------------------------------CC-TCC--CACTATAAGATGCACTAATCCCTCTTCCCA-ATTCTAGGCAAGTCCACGGATTCGAAAATTCCC---TACCTTTCGCAGCCCCTGTACGACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................................TA--GC------TGAT--GATC-----------------------AACTGAAA-------..........................................................................................................................................................................2011.0010010
droYak3
ACGAAAGAAA-------------------------------------------------------------G--------A------ATA----TCA---ATCGAACAAGT----C-----------AAATCAAATAAAAAGTCAAA-----TCGAATCGAATCCCAAAACAAA-----------------------TTGCATA--GC------TGAT--GATC-----------------------AACTGAAC-------CGAAA--------------------CC--------------------------------------------CC-TCC--CAGTATAAGATGCACTAATCCCTCTTCCCA-ATTCTAGGCAAGTCCACGGATTCGAAAATTCCC---TACCTTTCGCAGCCCCTGTACGACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
ACGAAAGA-------------------------------------------------------------------------------ATA----TCA---ATCGAACAAGT----C-----------AAAT----------------------CGAATCGAATCCC-AAACAAA-----------------------TTGCATA--GC------TGAT--GATC-----------------------AACTGAAC-------CGAAA--------------------CC--------------------------------------------CC-TCC--CAGTATAAGATGCACTAATCCCTCTTCCCA-ATTCTAGGCAAGTCCACGGATTCGAAAATTCCC---TACCTTTCGCAGCCCCTGTACGACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................CGAACAAGT----C-----------AAAT----------------------CGAATC.................................................................................................................................................................................................................................................................................2011.0011000000

Generated: 06/08/2015 at 03:51 PM