ID:

dpe_12

 Coordinate:

scaffold_5:4895140-4895205 +

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-38.8 -38.7 -38.4

Flybase annnotation

intron [Dper\GL26191-in]; utr5 [utr5_plus_986]

No Repeatable elements found

Sense Strand Reads

AAATATTTAATCCGGTGTTTCTGGTCGTTACTGCATTGGTGTCGTGGCTCTCAATTCCGTAGTGCATTGCAGTTTAATATAATTATCAACAACTGCAAGCGCTGTGGACTTGGCAGCTCCGATAGCCGCAAACACAGCTGCAGCAGCGATAGTGATAGCGATGAAC

***********************************.((((((((.((((.((((.((((((((((.((((((((..(((....)))....)))))))))))))))))).)))).)))).))))).)))..************************************ 		Read size # Mismatch Hit Count Total Norm Total V057

head

 V050

head

 V111

male body		 M021

embryo

 M042

female body

 V042

embryo
..................................................TCAATTCCGTAGTGCATTGCAGT............................................................................................. 23 0 1 17110.00 17110 8537 7562 724 16 171 100
..................................................TCAATTCCGTAGTGCATTGCAG.............................................................................................. 22 0 1 6322.00 6322 3382 2717 101 8 108 6
..................................................TCAATTCCGTAGTGCATTGC................................................................................................ 20 0 1 973.00 973 730 234 4 0 4 1
.............................................................................................TGCAAGCGCTGTGGACTTGGCA................................................... 22 0 1 901.00 901 354 230 23 277 12 5
..................................................TCAATTCCGTAGTGCATTGCA............................................................................................... 21 0 1 794.00 794 384 394 10 0 6 0
..................................................TCAATTCCGTAGTGCATTGCAGTT............................................................................................ 24 0 1 342.00 342 139 189 10 0 3 1
.............................................................................................TGCAAGCGCTGTGGACTTGGC.................................................... 21 0 1 297.00 297 135 111 24 20 1 6
..................................................TCAATTCCGTAGTGCATTG................................................................................................. 19 0 1 161.00 161 114 27 1 18 1 0
....................................................AATTCCGTAGTGCATTGCAGT............................................................................................. 21 0 1 156.00 156 82 73 0 0 1 0
..................................................TCAATGCCGTAGTGCATTGCAGT............................................................................................. 23 1 1 98.00 98 54 44 0 0 0 0
..................................................TCAATTCCGCAGTGCATTGCAGT............................................................................................. 23 1 1 87.00 87 59 24 4 0 0 0
.............................................................................................TGCAAGCGCTGTGGACTTGG..................................................... 20 0 1 72.00 72 39 26 7 0 0 0
..................................................TCAATTCCGGAGTGCATTGCAGT............................................................................................. 23 1 1 69.00 69 58 11 0 0 0 0
..................................................TCAATTCCGTAGCGCATTGCAGT............................................................................................. 23 1 1 65.00 65 44 20 1 0 0 0
..................................................TCAATTCCGTAGTGCATTGCTGT............................................................................................. 23 1 1 60.00 60 48 12 0 0 0 0
..................................................TCAATTCCGTAGTGCATTGCCGT............................................................................................. 23 1 1 60.00 60 30 30 0 0 0 0
..................................................TCAATTCCGTAGTGCATTGCAGA............................................................................................. 23 1 1 59.00 59 35 23 1 0 0 0
....................................................AATTCCGTAGTGCATTGCAG.............................................................................................. 20 0 1 59.00 59 36 23 0 0 0 0
..................................................TCAATTCCGTAGTGCATTGCAGC............................................................................................. 23 1 1 58.00 58 31 23 2 2 0 0
..................................................TAAATTCCGTAGTGCATTGCAGT............................................................................................. 23 1 1 48.00 48 40 8 0 0 0 0
..................................................TCAATTCCGTAGTGCATTGCCG.............................................................................................. 22 1 1 48.00 48 26 21 0 0 0 1
..................................................TCAATTCCGTAGTGCATTGCATT............................................................................................. 23 1 1 48.00 48 31 16 0 0 1 0
..................................................TCAATTCCGTAGTGCATTGCACT............................................................................................. 23 1 1 43.00 43 30 13 0 0 0 0
..................................................TCAATACCGTAGTGCATTGCAGT............................................................................................. 23 1 1 40.00 40 2 38 0 0 0 0
..................................................TCAATTCCGTAGGGCATTGCAGT............................................................................................. 23 1 1 40.00 40 35 4 1 0 0 0
...................................................CAATTCCGTAGTGCATTGCAGT............................................................................................. 22 0 1 39.00 39 14 16 0 0 9 0
..................................................TCAATTCCGTAGTGCATTGCAGTA............................................................................................ 24 1 1 38.00 38 16 21 1 0 0 0
..................................................TCAATTCCGTGGTGCATTGCAGT............................................................................................. 23 1 1 38.00 38 30 8 0 0 0 0
..................................................TCAATTCTGTAGTGCATTGCAGT............................................................................................. 23 1 1 37.00 37 18 19 0 0 0 0
..................................................TCAATTCCGTAGTGCATTGCGGT............................................................................................. 23 1 1 37.00 37 26 11 0 0 0 0
..................................................TCAATGCCGTAGTGCATTGCAG.............................................................................................. 22 1 1 36.00 36 26 10 0 0 0 0
..................................................TCAATTCCGGAGTGCATTGCAG.............................................................................................. 22 1 1 34.00 34 30 4 0 0 0 0
..................................................TCGATTCCGTAGTGCATTGCAGT............................................................................................. 23 1 1 34.00 34 20 13 1 0 0 0
..................................................TCAATTCCGTAGTGCATCGCAGT............................................................................................. 23 1 1 32.00 32 23 7 2 0 0 0
..................................................TCAATTCCGTAGCGCATTGCAG.............................................................................................. 22 1 1 32.00 32 17 15 0 0 0 0
..................................................TCAATTCCGCAGTGCATTGCAG.............................................................................................. 22 1 1 31.00 31 28 3 0 0 0 0
..................................................TCAATTCCGTAGAGCATTGCAGT............................................................................................. 23 1 1 31.00 31 22 9 0 0 0 0
..................................................TCAATTCCGTCGTGCATTGCAGT............................................................................................. 23 1 1 29.00 29 22 7 0 0 0 0
..................................................TCAATTCCGTAGTGCATTGCAT.............................................................................................. 22 1 1 28.00 28 18 10 0 0 0 0
..................................................TCAATTCAGTAGTGCATTGCAGT............................................................................................. 23 1 1 28.00 28 21 6 0 0 1 0
.............................................................................................TGCAAGCGCTGTGGACTTG...................................................... 19 0 1 27.00 27 20 1 6 0 0 0
..................................................TCAATTCCGTAGTGCATTTCAGT............................................................................................. 23 1 1 27.00 27 13 14 0 0 0 0
..................................................TCAGTTCCGTAGTGCATTGCAGT............................................................................................. 23 1 1 26.00 26 18 8 0 0 0 0
..................................................TCAATTCCGTAGTGCATTGCGG.............................................................................................. 22 1 1 26.00 26 15 11 0 0 0 0
..................................................TCAATTCCGTAGTCCATTGCAGT............................................................................................. 23 1 1 26.00 26 19 6 1 0 0 0
..................................................TCAATTCCGTAGTGCATTGCTG.............................................................................................. 22 1 1 25.00 25 23 2 0 0 0 0
..................................................TCAATTCCGTAGTGCATTGCAA.............................................................................................. 22 1 1 25.00 25 10 13 0 0 1 1
..................................................CCAATTCCGTAGTGCATTGCAGT............................................................................................. 23 1 1 25.00 25 18 6 1 0 0 0
..................................................TCAATTCCGTAGTGCATTTCAG.............................................................................................. 22 1 1 24.00 24 12 12 0 0 0 0
..................................................TCAATCCCGTAGTGCATTGCAGT............................................................................................. 23 1 1 23.00 23 5 17 1 0 0 0
..................................................TCAATTCCGTAGTGCACTGCAGT............................................................................................. 23 1 1 23.00 23 17 6 0 0 0 0
..................................................TCAATTCCGTAGTTCATTGCAGT............................................................................................. 23 1 1 23.00 23 14 7 2 0 0 0
..................................................TCACTTCCGTAGTGCATTGCAGT............................................................................................. 23 1 1 22.00 22 20 2 0 0 0 0
..................................................TCAATGCCGGAGTGCATTGCAGT............................................................................................. 23 2 1 21.00 21 18 3 0 0 0 0
..................................................TCAATTCCGAAGTGCATTGCAGT............................................................................................. 23 1 1 20.00 20 15 5 0 0 0 0
..................................................TCAATTCCGTAGTACATTGCAGT............................................................................................. 23 1 1 20.00 20 11 8 1 0 0 0
..................................................TCAATTACGTAGTGCATTGCAGT............................................................................................. 23 1 1 19.00 19 12 7 0 0 0 0
..................................................TCAATTCCGTACTGCATTGCAGT............................................................................................. 23 1 1 19.00 19 7 12 0 0 0 0
............................................................................................CTGCAAGCGCTGTGGACTTGGCA................................................... 23 0 1 18.00 18 6 2 0 10 0 0
..................................................TCAATTCCGTAGTGCATGGCAGT............................................................................................. 23 1 1 18.00 18 17 1 0 0 0 0
.............................................................................................TGCAAGCGCTGTGGACTTGGCG................................................... 22 1 1 18.00 18 1 0 0 17 0 0
..................................................TCAATTCCGTAGGGCATTGCAG.............................................................................................. 22 1 1 18.00 18 15 3 0 0 0 0
..................................................TCAATTCCGTAGTGCATTGCAGG............................................................................................. 23 1 1 16.00 16 6 6 0 4 0 0
..................................................TCAATTCCGTAGTGCATTACAGT............................................................................................. 23 1 1 16.00 16 5 10 0 0 1 0
..................................................TCAATTCCGTAGTGCATTCCAGT............................................................................................. 23 1 1 16.00 16 9 7 0 0 0 0
..................................................TCAATTCCATAGTGCATTGCAGT............................................................................................. 23 1 1 16.00 16 6 6 0 0 4 0
..................................................TAAATTCCGTAGTGCATTGCAG.............................................................................................. 22 1 1 15.00 15 7 8 0 0 0 0
..................................................TCAATTCCGTAGTGCGTTGCAGT............................................................................................. 23 1 1 15.00 15 10 4 0 0 1 0
.............................................................................................TGCAAGCGCTGTGGACTTGGT.................................................... 21 1 1 15.00 15 10 5 0 0 0 0
..................................................ACAATTCCGTAGTGCATTGCAGT............................................................................................. 23 1 1 14.00 14 12 1 1 0 0 0
..................................................TCAATTCCGTAGTGCACTGCAG.............................................................................................. 22 1 1 14.00 14 9 5 0 0 0 0
..................................................TCAATTCCGTAGTGAATTGCAGT............................................................................................. 23 1 1 13.00 13 8 5 0 0 0 0
...................................................CAATTCCGTAGTGCATTGCAG.............................................................................................. 21 0 1 13.00 13 1 4 0 0 8 0
..................................................TCAATTGCGTAGTGCATTGCAGT............................................................................................. 23 1 1 13.00 13 10 3 0 0 0 0
..................................................TCAAGTCCGTAGTGCATTGCAGT............................................................................................. 23 1 1 13.00 13 11 2 0 0 0 0
..................................................TCAATTCCGTCGTGCATTGCAG.............................................................................................. 22 1 1 13.00 13 8 5 0 0 0 0
..................................................CCAATTCCGTAGTGCATTGCAG.............................................................................................. 22 1 1 12.00 12 8 3 0 0 1 0
..................................................TCAATTCCGTAGAGCATTGCAG.............................................................................................. 22 1 1 12.00 12 9 3 0 0 0 0
..................................................TCAATTCCTTAGTGCATTGCAGT............................................................................................. 23 1 1 12.00 12 7 3 0 0 2 0
..................................................GCAATTCCGTAGTGCATTGCAGT............................................................................................. 23 1 1 12.00 12 10 2 0 0 0 0
..................................................TCAACTCCGTAGTGCATTGCAGT............................................................................................. 23 1 1 11.00 11 6 4 1 0 0 0
..................................................TCAATTCCGTAGTGCATTCCAG.............................................................................................. 22 1 1 11.00 11 7 4 0 0 0 0
....................................................AATTCCGTAGTGCATTGC................................................................................................ 18 0 1 11.00 11 7 4 0 0 0 0
..................................................TCAATTCCGTAGTGCATTGCAGTC............................................................................................ 24 1 1 11.00 11 9 2 0 0 0 0
..................................................TAAATTCCGCAGTGCATTGCAGT............................................................................................. 23 2 1 11.00 11 8 3 0 0 0 0
.................................................CTCAATTCCGTAGTGCATTGCAGT............................................................................................. 24 0 1 11.00 11 4 5 1 0 0 1
..................................................TTAATTCCGTAGTGCATTGCAGT............................................................................................. 23 1 1 11.00 11 6 4 1 0 0 0
..................................................TCAATTCCGTAGTGCATTGCAC.............................................................................................. 22 1 1 11.00 11 7 4 0 0 0 0
..................................................TCAATTCCGTAGTGCATTGTAGT............................................................................................. 23 1 1 11.00 11 9 1 1 0 0 0
..................................................TCAATTCCGTAGTGCAGTGCAGT............................................................................................. 23 1 1 11.00 11 9 1 1 0 0 0
..................................................TCAGTTCCGTAGTGCATTGCAG.............................................................................................. 22 1 1 11.00 11 9 2 0 0 0 0
..................................................TCAATCCCGTAGTGCATTGCAG.............................................................................................. 22 1 1 10.00 10 3 7 0 0 0 0
..................................................TCAATTCCGTAGTGCCTTGCAGT............................................................................................. 23 1 1 10.00 10 5 5 0 0 0 0
..................................................TTAATTCCGTAGTGCATTGCAG.............................................................................................. 22 1 1 10.00 10 4 6 0 0 0 0
..................................................TCAATTTCGTAGTGCATTGCAGT............................................................................................. 23 1 1 10.00 10 6 4 0 0 0 0
..................................................TCGATTCCGTAGTGCATTGCAG.............................................................................................. 22 1 1 10.00 10 3 7 0 0 0 0
..................................................TCAATTCAGTAGTGCATTGCAG.............................................................................................. 22 1 1 10.00 10 8 2 0 0 0 0
..................................................TCAATTCCGTAGTGCATTGCAAT............................................................................................. 23 1 1 9.00 9 4 5 0 0 0 0
..................................................TCAATTCCGGAGTGCATTGC................................................................................................ 20 1 1 9.00 9 9 0 0 0 0 0
..................................................TCAATTCCGTATTGCATTGCAGT............................................................................................. 23 1 1 9.00 9 4 5 0 0 0 0
..................................................TCAATTCCGTAGTGCGTTGCAG.............................................................................................. 22 1 1 9.00 9 3 6 0 0 0 0
..................................................TCAATTCCGTAGTGCATTACAG.............................................................................................. 22 1 1 9.00 9 3 6 0 0 0 0
..................................................TCAATTCCGTAATGCATTGCAGT............................................................................................. 23 1 1 9.00 9 4 5 0 0 0 0
..................................................TCAATTCTGTAGTGCATTGCAG.............................................................................................. 22 1 1 9.00 9 5 4 0 0 0 0
..................................................TCAATACCGTAGTGCATTGCAG.............................................................................................. 22 1 1 8.00 8 1 7 0 0 0 0
..................................................TCAATTCCGAAGTGCATTGCAG.............................................................................................. 22 1 1 8.00 8 5 3 0 0 0 0
..................................................TCAATTCCGTAGTGCATTGAAG.............................................................................................. 22 1 1 8.00 8 2 5 0 0 1 0
..................................................TCAATTCCGTTGTGCATTGCAGT............................................................................................. 23 1 1 8.00 8 7 1 0 0 0 0
..................................................TCAATTCCGTAGTGCATTGAAGT............................................................................................. 23 1 1 8.00 8 2 5 1 0 0 0
..................................................TCAATTCCCTAGTGCATTGCAGT............................................................................................. 23 1 1 8.00 8 4 2 0 0 2 0
.............................................................................................TGCAAGCGCTGTGGACTTGGCT................................................... 22 1 1 8.00 8 5 2 0 0 1 0
..................................................TCAATTCCGGAGTGCATTGCTGT............................................................................................. 23 2 1 8.00 8 8 0 0 0 0 0
..................................................TCAATGCCGGAGTGCATGGCAGT............................................................................................. 23 3 1 8.00 8 5 3 0 0 0 0
..................................................TCAATTCCGTAGTCCATTGCAG.............................................................................................. 22 1 1 7.00 7 3 4 0 0 0 0
....................................................AATTCCGTAGTGCATTGCA............................................................................................... 19 0 1 7.00 7 3 4 0 0 0 0
..................................................TCAATTCCGGAGTGCATGGCAGT............................................................................................. 23 2 1 7.00 7 5 2 0 0 0 0
..................................................TCAATGCCGGAGTGCATTGCAG.............................................................................................. 22 2 1 7.00 7 6 1 0 0 0 0
..................................................GCAATTCCGTAGTGCATTGCAG.............................................................................................. 22 1 1 7.00 7 6 0 0 0 1 0
..................................................TCACTTCCGTAGTGCATTGCAG.............................................................................................. 22 1 1 7.00 7 6 1 0 0 0 0
..................................................TCAATTCCGTAGTGAATTGCAG.............................................................................................. 22 1 1 7.00 7 5 2 0 0 0 0
.....................................................ATTCCGTAGTGCATTGCAGT............................................................................................. 20 0 1 6.00 6 5 1 0 0 0 0
..................................................TCAATGCCGTAGTGCATTGC................................................................................................ 20 1 1 6.00 6 6 0 0 0 0 0
..................................................TCCATTCCGTAGTGCATTGCAGT............................................................................................. 23 1 1 6.00 6 4 2 0 0 0 0
..................................................TCAATTCCGTAGTGCATTGTAG.............................................................................................. 22 1 1 6.00 6 2 4 0 0 0 0
..................................................TCAATTCCGTAGAGCATTGCAGC............................................................................................. 23 2 1 6.00 6 4 2 0 0 0 0
..................................................TCAATTCCATAGTGCATTGCAG.............................................................................................. 22 1 1 6.00 6 1 3 0 0 2 0
..................................................TCAATTTCGTAGTGCATTGCAG.............................................................................................. 22 1 1 6.00 6 3 3 0 0 0 0
..................................................TCAATGCCGGGGTGCATTGCAGT............................................................................................. 23 3 1 6.00 6 6 0 0 0 0 0
..................................................TAAATTCCGTAGTGCATTGC................................................................................................ 20 1 1 6.00 6 5 1 0 0 0 0
..................................................TCGATTCCGTAGTGCATTGC................................................................................................ 20 1 1 6.00 6 6 0 0 0 0 0
..................................................TCAATTCCGCAGTGCATTGCA............................................................................................... 21 1 1 6.00 6 6 0 0 0 0 0
..................................................TCAAGTCCGTAGTGCATTGCAG.............................................................................................. 22 1 1 6.00 6 5 1 0 0 0 0
..................................................TCAATTCCGTATTGCATTGCAG.............................................................................................. 22 1 1 6.00 6 4 2 0 0 0 0
..................................................TCAATTCCGTAGTGCATCGCAG.............................................................................................. 22 1 1 6.00 6 3 3 0 0 0 0
..................................................TCAATTCCGTAGCGCATTCCAG.............................................................................................. 22 2 1 6.00 6 5 1 0 0 0 0
..................................................TCAATTCCGTGGTGCATTGCAG.............................................................................................. 22 1 1 6.00 6 2 4 0 0 0 0
..................................................TCAATTCCGCAGTGCATTGC................................................................................................ 20 1 1 6.00 6 5 1 0 0 0 0
..................................................TCAATTCCGTAGTGCATGGCAG.............................................................................................. 22 1 1 6.00 6 6 0 0 0 0 0
..................................................TCAATTCCGTAGTGCAGTGCAG.............................................................................................. 22 1 1 6.00 6 4 1 0 0 0 1
..................................................TCAATTCCGAAGAGCATTGCAG.............................................................................................. 22 2 1 5.00 5 4 1 0 0 0 0
..................................................TCAATTCCGTAGTGCATTGGAGT............................................................................................. 23 1 1 5.00 5 3 2 0 0 0 0
..................................................TCAATGCCGTAGTGCATTGCTGT............................................................................................. 23 2 2 5.00 10 8 2 0 0 0 0
..................................................TCAATTCCGTAGTGCATTGCT............................................................................................... 21 1 1 5.00 5 4 1 0 0 0 0
..................................................TCAATTCCGCAGGGCATTGCAGT............................................................................................. 23 2 1 5.00 5 5 0 0 0 0 0
..................................................TCAATGCCGTAGTGCATGGCAGT............................................................................................. 23 2 1 5.00 5 3 2 0 0 0 0
..................................................TCAAGTCCGTAGGGCATTGCAGT............................................................................................. 23 2 1 5.00 5 5 0 0 0 0 0
..................................................TCAATTCCGTAGTGCATTGCAGTTT........................................................................................... 25 0 1 5.00 5 0 5 0 0 0 0
..................................................TCAATGCCGTAGTGCATTGCA............................................................................................... 21 1 1 5.00 5 4 1 0 0 0 0
............................................................................................CTGCAAGCGCTGTGGACTTGGC.................................................... 22 0 1 5.00 5 1 2 0 2 0 0
..................................................TCAATTCCGTAGTGCACTGCA............................................................................................... 21 1 1 5.00 5 4 1 0 0 0 0
......................................................TTCCGTAGTGCATTGCAGT............................................................................................. 19 0 1 5.00 5 3 2 0 0 0 0
..................................................TAAATTCCGCAGGGCATTGCAGT............................................................................................. 23 3 1 5.00 5 3 2 0 0 0 0
..................................................TCAATTCCGTAGTGCATTGCCTT............................................................................................. 23 2 1 5.00 5 5 0 0 0 0 0
..................................................TCAATTCCTTAGTGCATTGCAG.............................................................................................. 22 1 1 5.00 5 4 1 0 0 0 0
..................................................ACAATTCCGTAGTGCATTGCAG.............................................................................................. 22 1 1 5.00 5 4 0 0 0 1 0
..................................................TCAATTCCGTAGTGCAATGCAGT............................................................................................. 23 1 1 5.00 5 1 4 0 0 0 0
..................................................TCAATTCGGTAGTGCATTGCAGT............................................................................................. 23 1 1 5.00 5 4 1 0 0 0 0
....................................................AATTCCGTAGTGCATTGCAGTT............................................................................................ 22 0 1 5.00 5 2 3 0 0 0 0
..................................................TCAATTCCGTAGTGCATAGCAGT............................................................................................. 23 1 1 5.00 5 3 2 0 0 0 0
..................................................TCAATTCCGTAGTGCATT.................................................................................................. 18 0 1 5.00 5 4 0 0 1 0 0
..................................................TCAATGCCGGAGTGCATTGCTGT............................................................................................. 23 3 2 5.00 10 9 1 0 0 0 0
..................................................TCAATTCCGTAGTGCTTTGCAG.............................................................................................. 22 1 1 5.00 5 5 0 0 0 0 0
..................................................TCAATTCCGTACTGCATTGCAG.............................................................................................. 22 1 1 4.00 4 4 0 0 0 0 0
.............................................................................................TGCAAGCGCTGTGGACTTGTC.................................................... 21 1 1 4.00 4 4 0 0 0 0 0
.............................................................................................TGCAAGCGCTGTGGACTTAGCA................................................... 22 1 1 4.00 4 4 0 0 0 0 0
..................................................TCAATTCCGTAGTGCATGGC................................................................................................ 20 1 1 4.00 4 3 1 0 0 0 0
..................................................TCAATTCCGTAGTGCATTGCATC............................................................................................. 23 2 1 4.00 4 4 0 0 0 0 0
..................................................TCAATTCCGTAGTGCATTGCG............................................................................................... 21 1 1 4.00 4 3 1 0 0 0 0
..................................................TCAATTCCGTAGTGCATTGA................................................................................................ 20 1 1 4.00 4 2 2 0 0 0 0
..................................................TCAATTCCGTAGTGTATTGCAGT............................................................................................. 23 1 1 4.00 4 0 3 1 0 0 0
..................................................TCAACTCCGTAGTGCATTGCAG.............................................................................................. 22 1 1 4.00 4 4 0 0 0 0 0
..................................................TCAATGCCGTACTGCATTGCAGT............................................................................................. 23 2 1 4.00 4 3 1 0 0 0 0
..................................................TCAATTCCGTAGTTCATTGCAG.............................................................................................. 22 1 1 4.00 4 3 1 0 0 0 0
..................................................TCAATCCCGTAGTGCATTGCA............................................................................................... 21 1 1 4.00 4 3 1 0 0 0 0
.....................................................ATTCCGTAGTGCATTGCAG.............................................................................................. 19 0 1 4.00 4 3 1 0 0 0 0
..................................................TCAATTCCGCAGGGCATTGCAG.............................................................................................. 22 2 1 4.00 4 3 1 0 0 0 0
..................................................TCAATTCCGCAGTGCATTGCAGC............................................................................................. 23 2 1 4.00 4 4 0 0 0 0 0
...................................................CAATTCCGTAGTGCATTGCA............................................................................................... 20 0 1 4.00 4 1 2 0 0 1 0
..................................................TCAATTCCGTAGCGCATTGCCGT............................................................................................. 23 2 1 4.00 4 3 1 0 0 0 0
..................................................TCAATGCCGTAGTGCATTGCACT............................................................................................. 23 2 1 4.00 4 4 0 0 0 0 0
..................................................TCAATTCCGTCGTGCATTGCTGT............................................................................................. 23 2 1 4.00 4 3 1 0 0 0 0
..................................................TCAATTCCGTCGTGCATTGC................................................................................................ 20 1 1 4.00 4 3 1 0 0 0 0
..................................................TCTATTCCGTAGTGCATTGCAG.............................................................................................. 22 1 1 4.00 4 3 1 0 0 0 0
..................................................TCAATTCCGCAGTGCATTGCATC............................................................................................. 23 3 1 4.00 4 2 2 0 0 0 0
..................................................TCAATTCCGTAGCGCATTCCAGT............................................................................................. 23 2 1 4.00 4 2 2 0 0 0 0
..................................................TAAATTACGTAGTGCATTGCAGT............................................................................................. 23 2 1 4.00 4 3 1 0 0 0 0
..................................................TCAATTCCGTAGTGCATTTC................................................................................................ 20 1 1 4.00 4 4 0 0 0 0 0
..................................................TCAATTCCGTAGTGCATTGCCT.............................................................................................. 22 2 1 4.00 4 3 1 0 0 0 0
..................................................TCAATTCCGTAGCGCATTGCA............................................................................................... 21 1 1 4.00 4 4 0 0 0 0 0
..................................................TCAAATCCGTAGTGCATTGCAGT............................................................................................. 23 1 1 4.00 4 4 0 0 0 0 0
.............................................................................................TGCAAGCGCTGCGGACTTGGCA................................................... 22 1 1 4.00 4 1 3 0 0 0 0
.................................................CTCAATTCCGTAGTGCATTGCAG.............................................................................................. 23 0 1 4.00 4 2 2 0 0 0 0
..................................................TGAATTCCGTAGTGCATTGCAGT............................................................................................. 23 1 1 4.00 4 3 1 0 0 0 0
...............................TGCATTGGTGTCGTGGCTC.................................................................................................................... 19 0 1 4.00 4 1 2 0 0 0 1
.............................................................................................TGCAAGCGCTGTGGACTTGTCA................................................... 22 1 1 4.00 4 2 2 0 0 0 0
..................................................TCAATTCCGCAGCGCATTGCAGT............................................................................................. 23 2 1 4.00 4 4 0 0 0 0 0
.............................................................................................TGCAAGCGCTGTGGACTGGGC.................................................... 21 1 1 4.00 4 4 0 0 0 0 0
..................................................TCAATGCCGTAGTGCATTGCAGG............................................................................................. 23 2 1 4.00 4 1 3 0 0 0 0
.............................................................................................CGCAAGCGCTGTGGACTTGGCA................................................... 22 1 1 4.00 4 1 3 0 0 0 0
..................................................TCAATTACGTGGTGCATTGCAGT............................................................................................. 23 2 1 4.00 4 3 1 0 0 0 0
..................................................TCAATGCCGGAGTGCATTGCA............................................................................................... 21 2 1 4.00 4 2 2 0 0 0 0
..................................................TCAATTCCGTAGTCCATTGCTG.............................................................................................. 22 2 1 4.00 4 4 0 0 0 0 0
..................................................TCAAGTCCGTAGCGCATTGCAGT............................................................................................. 23 2 1 4.00 4 3 1 0 0 0 0
..................................................TCAATTCCGTAGCGCAGTGCAGT............................................................................................. 23 2 1 4.00 4 2 2 0 0 0 0
.............................................................................................TGCAAGCGCTGAGGACTTGGCA................................................... 22 1 1 3.00 3 3 0 0 0 0 0
..................................................TCAATTCCGAAGAGCATTGCAGT............................................................................................. 23 2 1 3.00 3 3 0 0 0 0 0
..................................................TCAATTCCGTGGCGCATTGCAGT............................................................................................. 23 2 1 3.00 3 3 0 0 0 0 0
..................................................TCAATTCCGTAGTGCTTTGCAGT............................................................................................. 23 1 1 3.00 3 2 1 0 0 0 0
..................................................TCATTTCCGTAGTGCATTGCA............................................................................................... 21 1 1 3.00 3 2 1 0 0 0 0
..................................................TCAATTCCGTAGTGCATTGCCGTT............................................................................................ 24 1 1 3.00 3 1 2 0 0 0 0
..................................................TCAATTCCGAAGTGCATTGCTG.............................................................................................. 22 2 1 3.00 3 3 0 0 0 0 0
..................................................TTAATTCCGTAGTGCATTGCA............................................................................................... 21 1 1 3.00 3 2 1 0 0 0 0
..................................................TCAATTCCGTAGGGCATTGC................................................................................................ 20 1 1 3.00 3 3 0 0 0 0 0
..................................................TCAATTCCGTAGGGCATTGCAGC............................................................................................. 23 2 1 3.00 3 2 1 0 0 0 0
..................................................TCCATTCCGTCGTGCATTGCAGT............................................................................................. 23 2 1 3.00 3 3 0 0 0 0 0
..................................................TCAATTCAGTAGGGCATTGCAG.............................................................................................. 22 2 1 3.00 3 3 0 0 0 0 0
..................................................TCAATTCCGTAGTGTATTGCAG.............................................................................................. 22 1 1 3.00 3 2 0 1 0 0 0
.............................................................................................TGCAAGCGCTGCGGACTTGGG.................................................... 21 2 1 3.00 3 2 1 0 0 0 0
..................................................TCAATTCCGCAGTGCATTGCATT............................................................................................. 23 2 1 3.00 3 1 2 0 0 0 0
..................................................TCAATTCCGTAGTGCATCGC................................................................................................ 20 1 1 3.00 3 3 0 0 0 0 0
...............................................................................................CAAGCGCTGTGGACTTGGCA................................................... 20 0 1 3.00 3 0 1 0 2 0 0
..................................................TCAATTCCGTAGTGCATTTCA............................................................................................... 21 1 1 3.00 3 2 1 0 0 0 0
..................................................TCAATTCCGTAGTGCATTGCGTT............................................................................................. 23 2 1 3.00 3 3 0 0 0 0 0
..................................................TCAATTCTGTAGTGCATTGC................................................................................................ 20 1 1 3.00 3 1 2 0 0 0 0
..................................................TCAATTCCGAAGTGCATTGC................................................................................................ 20 1 1 3.00 3 2 1 0 0 0 0
..................................................TCAATTCCGGAGTGCATTGCGGT............................................................................................. 23 2 1 3.00 3 3 0 0 0 0 0
..................................................TTAATTCCGTAGCGCATTGCAGT............................................................................................. 23 2 1 3.00 3 2 1 0 0 0 0
..................................................TCAATTCAGTAGCGCATTGCAGT............................................................................................. 23 2 1 3.00 3 3 0 0 0 0 0
..................................................TCAATTCCGCAGTGCATTGCAGA............................................................................................. 23 2 1 3.00 3 3 0 0 0 0 0
..................................................TCAATTCCGGAGTGCACTGCAGT............................................................................................. 23 2 1 3.00 3 3 0 0 0 0 0
..................................................ACAATTCCGGAGTGCATTGCAGT............................................................................................. 23 2 1 3.00 3 3 0 0 0 0 0
..................................................TCAATTCCGTAGTGCATAGCAG.............................................................................................. 22 1 1 3.00 3 1 2 0 0 0 0
..................................................TCAATTCCGGAGTGCATTGCAGTT............................................................................................ 24 1 1 3.00 3 3 0 0 0 0 0
..................................................TCAATGCAGTAGTGCATTGCAG.............................................................................................. 22 2 1 3.00 3 2 1 0 0 0 0
..................................................TCAATTCAGTAGTGCAGTGCAGT............................................................................................. 23 2 1 3.00 3 3 0 0 0 0 0
..................................................TCAATGCCGTAGTGCATTGCAGC............................................................................................. 23 2 1 3.00 3 1 2 0 0 0 0
..................................................TCAATTCCGTAGTGCATTCCCG.............................................................................................. 22 2 1 3.00 3 1 2 0 0 0 0
..................................................TCAATTCCGTAGTCCATTGC................................................................................................ 20 1 1 3.00 3 3 0 0 0 0 0
.............................................................................................TGCAAGCGCTGTGGACTTGGTA................................................... 22 1 1 3.00 3 3 0 0 0 0 0
.............................................................................................TGCAAGCGCTGTGTACTTGGCA................................................... 22 1 1 3.00 3 3 0 0 0 0 0
..................................................TCAATTCCGGAGGGCATTGCAGT............................................................................................. 23 2 1 3.00 3 3 0 0 0 0 0
..................................................TCAATTACGTAGTGCATTGCGGT............................................................................................. 23 2 1 3.00 3 2 1 0 0 0 0
..................................................TCAATGCCGCAGTGCATTGCAGT............................................................................................. 23 2 1 3.00 3 3 0 0 0 0 0
..................................................TCAATTCCGCAGCGCATTGCAG.............................................................................................. 22 2 1 3.00 3 1 2 0 0 0 0
.............................................................................................TGCAAGCGCTGTGGACTTGGA.................................................... 21 1 1 3.00 3 3 0 0 0 0 0
..................................................TCAATGCCGTGGTGCATTGCAGT............................................................................................. 23 2 1 3.00 3 3 0 0 0 0 0
..................................................TCAATTCCGAAGTGCATTGCAGC............................................................................................. 23 2 1 3.00 3 1 2 0 0 0 0
..................................................TCAATTCCGGAGTGCATTGCCGT............................................................................................. 23 2 1 3.00 3 3 0 0 0 0 0
..................................................TCAATGCCGTAGCGCATTGCAGT............................................................................................. 23 2 1 3.00 3 3 0 0 0 0 0
..................................................TCAATTCCGCAGTGCATTACAGT............................................................................................. 23 2 1 3.00 3 3 0 0 0 0 0
..................................................TCAATTCCGTAGTGCATTCCAGC............................................................................................. 23 2 1 3.00 3 2 1 0 0 0 0
..................................................TCAATTCCGTAGGGCATTGCA............................................................................................... 21 1 1 3.00 3 3 0 0 0 0 0
..................................................TCAAGTCCGTAGTGCAGGGCAGT............................................................................................. 23 3 1 3.00 3 3 0 0 0 0 0
..................................................TCAATTCCGTAGTGCATTGCATG............................................................................................. 23 2 1 3.00 3 2 1 0 0 0 0
..................................................TCAATTCCGTAGTACATTGCAG.............................................................................................. 22 1 1 3.00 3 2 1 0 0 0 0
..................................................TCAATTCCGAAGCGCATTGCAGT............................................................................................. 23 2 1 3.00 3 3 0 0 0 0 0
..................................................TCAATTCAGTAGTGCATTGC................................................................................................ 20 1 1 3.00 3 3 0 0 0 0 0
..................................................TCAATTCCGTAGTGCATTGCAGTG............................................................................................ 24 1 1 3.00 3 1 2 0 0 0 0
..................................................TCAATTCCGTAGTGCATCGCAGTT............................................................................................ 24 1 1 3.00 3 1 2 0 0 0 0
..................................................TCAATTACGGAGTGCATTGCAGT............................................................................................. 23 2 1 3.00 3 2 1 0 0 0 0
..................................................TCAATTCAGTAGTGCATTGCACT............................................................................................. 23 2 1 3.00 3 2 1 0 0 0 0
..................................................TCAATGCCGGAGTGCATTGC................................................................................................ 20 2 1 3.00 3 2 1 0 0 0 0
..................................................TCAATTCCGTAGCGCATTGC................................................................................................ 20 1 1 3.00 3 3 0 0 0 0 0
..................................................TCAATTCCGTAGTTCATTGC................................................................................................ 20 1 1 3.00 3 2 1 0 0 0 0
..................................................TCAATGCCGTAGTGCATTGCGGT............................................................................................. 23 2 1 3.00 3 3 0 0 0 0 0
..................................................TCAATTCCGTACTGCATTGCAC.............................................................................................. 22 2 1 3.00 3 1 2 0 0 0 0
..................................................TCAATTCCGTAGTGCATTTCATT............................................................................................. 23 2 1 3.00 3 2 1 0 0 0 0
..................................................TCAATTCCGTACTGCATTGCACT............................................................................................. 23 2 1 3.00 3 3 0 0 0 0 0
..................................................TCAATTCCGTAGTGCCTTGC................................................................................................ 20 1 1 3.00 3 3 0 0 0 0 0
..................................................TCAATTCCGGAGTGCATTGCCG.............................................................................................. 22 2 1 3.00 3 3 0 0 0 0 0
..................................................TCAAGTCCGTAGTGCATGGCAGT............................................................................................. 23 2 1 3.00 3 3 0 0 0 0 0
..................................................TAAATTCCGTAGTGCATTGCA............................................................................................... 21 1 1 3.00 3 3 0 0 0 0 0
..................................................TCAATTCCGTAGTGCATTGCC............................................................................................... 21 1 1 3.00 3 2 1 0 0 0 0
..................................................TCAATTCCGTAGTGCAATGCAG.............................................................................................. 22 1 1 3.00 3 2 1 0 0 0 0
..................................................TAAATTCCGTAGGGCATTGCAGT............................................................................................. 23 2 1 3.00 3 1 2 0 0 0 0
..................................................TCAATGCCGTAGGGCATTGCAGT............................................................................................. 23 2 1 3.00 3 2 1 0 0 0 0
..................................................TCACTTCCGTCGTGCATTGCAG.............................................................................................. 22 2 1 3.00 3 3 0 0 0 0 0
..................................................TCCATTCCGTAGTGCATTGCAG.............................................................................................. 22 1 1 3.00 3 2 1 0 0 0 0
.............................................................................................TGCAAGCGCTGTGGAATTGGCA................................................... 22 1 1 3.00 3 2 1 0 0 0 0
..................................................TCGATTCCGGAGTGCATTGCAG.............................................................................................. 22 2 1 3.00 3 3 0 0 0 0 0
..................................................TAAATTCCGCAGTGCATTGCAGC............................................................................................. 23 3 1 3.00 3 3 0 0 0 0 0
.............................................................................................TGCAAGCGCTGTGGCCTTGGC.................................................... 21 1 1 3.00 3 0 3 0 0 0 0
..................................................TCAATGCCGTAGTGCATTGCTG.............................................................................................. 22 2 2 2.50 5 3 2 0 0 0 0
..................................................TCAAGTCCGTGGTGCATTGCAGT............................................................................................. 23 2 1 2.00 2 1 1 0 0 0 0
..................................................TCAAGTCCGGAGTGCATTGCAGT............................................................................................. 23 2 1 2.00 2 2 0 0 0 0 0
..................................................TCAATGCCGTAGTGCATTGCAGTT............................................................................................ 24 1 1 2.00 2 1 1 0 0 0 0
..................................................TCATTTTCGTAGGGCATTGCAGT............................................................................................. 23 3 1 2.00 2 2 0 0 0 0 0
..................................................TCAATTCCGTAGTGCATTTCTG.............................................................................................. 22 2 1 2.00 2 2 0 0 0 0 0
..................................................TCAATTCCGCAGTGCATTTCAGT............................................................................................. 23 2 1 2.00 2 2 0 0 0 0 0
....................................................AATTCCGTAGTGCATTGCAGTA............................................................................................ 22 1 1 2.00 2 0 2 0 0 0 0
..................................................TCAATTCCGTAGTGCCTTGCCGT............................................................................................. 23 2 1 2.00 2 1 0 0 0 0 1
..................................................TCAATTCCGTAGCGCATTGCAC.............................................................................................. 22 2 1 2.00 2 1 1 0 0 0 0
................................................................................................AAGCGCTGTGGACTTGGCA................................................... 19 0 1 2.00 2 1 1 0 0 0 0
..................................................TCACTTCCGGAGTGCATTGCTG.............................................................................................. 22 3 1 2.00 2 2 0 0 0 0 0
..................................................TCACTTCCGCAGTGCATTGCAGT............................................................................................. 23 2 1 2.00 2 2 0 0 0 0 0
..................................................TCAATTCCGTAGTGGATTGCAGT............................................................................................. 23 1 1 2.00 2 0 2 0 0 0 0
..................................................TCAATTCCGAAGTGCATTGCACT............................................................................................. 23 2 1 2.00 2 0 2 0 0 0 0
....................................................AATTCAGTAGTGCATTGCAGT............................................................................................. 21 1 1 2.00 2 1 1 0 0 0 0
..................................................TCAATTCCGTAGTGCATGCCAG.............................................................................................. 22 2 1 2.00 2 2 0 0 0 0 0
..................................................TCAATTCCGTTGTGCATTGCAG.............................................................................................. 22 1 1 2.00 2 1 1 0 0 0 0
..................................................TCAATGGCGTAGTGCATTGCAGT............................................................................................. 23 2 1 2.00 2 1 1 0 0 0 0

Anti-sense strand reads

TTTATAAATTAGGCCACAAAGACCAGCAATGACGTAACCACAGCACCGAGAGTTAAGGCATCACGTAACGTCAAATTATATTAATAGTTGTTGACGTTCGCGACACCTGAACCGTCGAGGCTATCGGCGTTTGTGTCGACGTCGTCGCTATCACTATCGCTACTTG

************************************.((((((((.((((.((((.((((((((((.((((((((..(((....)))....)))))))))))))))))).)))).)))).))))).)))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total M042

female body
.........................................................................................................CCTGAACCGTCGAGGCTATCGG....................................... 22 0 1 1.00 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droPer2 scaffold_5:4895090-4895255 + dpe_12 confident AAATATTTAATCCGGTGTTTCTGGTCGTTACTGC--ATTGGTGTCGTGGCTCTCAATTCCGTAGTGCATTGCAGTTTAATATAATTATCAACAACTGCAAGCGCTGTGGACTTGGCAGCTCCGAT-AGCCGCAAACACAGCT---GC----------------AGCAGC--GAT-----A---G---------------------------TGATAGCG----------------ATGA---AC---------
dp5 4_group5:397086-397251 + dps-mir-932 Known_mirbase AAATATTTAATCCGGTGTTTCTGGTCGTTACTGC--ATTGGTGTCGTGGCTCTCAATTCCGTAGTGCATTGCAGTTTAATATAATTATCAACAACTGCAAGCGCTGTGGACTTGGCAGCTCCGAT-AGCCGCAAACACAGCT---GC----------------AGCAGC--GAT-----A---G---------------------------TGATAGCG----------------ATGA---AT---------
droWil2 scf2_1100000004585:6812336-6812433 - dwi_24 confident ---------------------------------------GGCATTGTAGCTATCAATTCCGTAGTGCATTGCAGTTGGTA----CTAGAAAATACTGCAAGCGCTGCGGACTTGCTAACTCTGAT-GACCATAAAACCACCT---------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12963:14767688-14767832 - dvi-mir-932 Known_mirbase --------------------------------------TGGCAGCGAAACTCTCAATTCCGTAGTGCATTGCAGTTGATT----TTAGGAATTACTGCAAGCGCTGCAGAATTGGCAGCTCCGCT-GACCGCAGACA--ACGTATGGAATCGCAGCTCATCGGATGAACATGAA--AGATAT---------------------------------AGAT----------------ATAA---AA---------
droMoj3 scaffold_6500:17707441-17707537 - dmo_8 confident ---------------------------------C--AATGGCTGCGTAACTTTCAATTCCGTAGTGCATTGCAGTTGATT----TAAGGAATTACTGCAAGCGCTGCAGAATTGGCAGCTCCGTT-GACCACAGACA--------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15126:4596352-4596485 + dgr_33 candidate-rescued T-------------------------------GC--AATGGCAATGTAACTTTCAATTCCGTAGTGCATTGCAGTTGATT----TAAGCAACTACTGCATGCCCTGCAGAATTGGCAGCTCTGTT-GACCACATACA--GCA---A----------------ATGGTGTAAGTA--ACTAATATT------------------------------GACT----------------ATAT---AT---------
droAna3 scaffold_12916:8482562-8482693 + dan_10 confident -------------------------------------TTGGTTTCGAGACTTTCAATTCCGTAGTGCATTGCAGTGTTTT----TAAACTACAACTGCATGCTCTGCGGACTTGGCAGATTTGAA-GACCAGGAGCA--ACT---TT---------T----AAGAAC----AAT-----A---TT---------T---AACA---------AAAAAGTG----------------ATTA---AT---------
droBip1 scf7180000396572:2915424-2915544 - ---------------------------------------GGTTTCGAGACTTTCAATTCCGTAGTGCATTGCAGTGTTTT----TAAAGTTCTACTGCAAGCTCTGCGGACTTGGCAGATTTGAA-AACCAACAGCA--ACT---GT---------C----AATAAAAAGA------------TT------------------------------TAAC----------------AAAA---AT---------
droKik1 scf7180000302468:247252-247392 - --------------------------------CTAAAATGGTATCGAAGCTTTCAATTCCGTAGTGCATTGCAGTGTTTC----AAAGTCCCAACTGCAAGCATTGTGGGATTGGCAGCATTGACCCACCATGAACA--TCGCCTGAAACAG---------AATCGCCTGTGAA--TAAAATAGT---------------------------------------------------TTT---GC---------
droFic1 scf7180000453815:262230-262363 + ---------------------------------------GGTATTGAAGCTTTCAATTCCGTAGTGCATTGCAGTGTGCT----TAATTATCAACCGCAAGCGCTGCGGATTTGGCAACTTTGAT-GGCCTCCATCA--TCT---GC---------T----AATTAAATGTAAA--ATTATGAA---------------------------TAATGATT----------------ATAA---AT---------
droEle1 scf7180000490970:125071-125209 + ---------------------------------------GGTTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTACT----TAATTAGCAACTGCAAGCGCAGCGGATTTGGCAACTTTGAC-GACCTTCATCA--TCT---GC---------A----TGTCGAATGTAAA--GTAATTATCAA---------------------------CTAAT----------------ATAA---AC----ATACA
droRho1 scf7180000780014:73888-74050 + AGGTCCTTTGCTCGGTATTTC-----------AA--AAAGGTATTGAAGCTTTCAATTCCGTAGTGCATTGCAGTGTGTT----TTACTATCTACTGCAAGCGCAGCGGATTTGGCAACTTTGAC-GACCTTTATCA--TCT---GT---------A----AGTCAAAAGTGAA--GTTAATAGTCACTAATAA-----------------T---GAC--------------------A---GC---------
droBia1 scf7180000302422:2681485-2681613 + ---------------------------------------GGTATTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTGCT----AAGCTATCTACTGCAAGCGCTGCGGATTTGGCAACTTTGAC-GACCTCCAACA--TCT---GC---------T----GGCGAAATGTGTAAAATTA----------------------------------AAACC----------------ATGA---AC---------
droTak1 scf7180000415104:31220-31358 + ---------------------------------------GGTATTGAAGCTTTCAATTCCGTAGTGCATTGCAGTGTGCT----TAAAAATCTACTGCAAGCGCTGCGGATTTGGCAACTTTGAG-GACCTTCATCA--TCT---GC---------T----AGTCAAATGTGAA--AT--------------------------------------AGCATAATAATATTTAGAAATAA---TA---------
droEug1 scf7180000409463:2212273-2212428 - ---------------------------------------GGTATTGAAGCTTTCAATTCCGTAGTGCATTGCAGTGTGTT----TAAATATCAACTGCAAGCGCTGCGGACTTGGCAACTTTGAT-GACCTTCATCA--TCT---AA---------T----AGTCAAATGTAAA--AAA----CTTAAAATTTATGACAGC-ATTAAGTATT---GATA----------------ATAAAAAGA---------
dm3 chr2L:6902059-6902205 + dme-mir-932 Known_mirbase --------------------------------GT--ATTGGTTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTGTT----TCATTATTTACTGCAAGCGCTGCGGATTTGGCAACTTTGAC-GACCTTCATCA--TCT---GC---------T----AGAGAAATGTGAA--ATTTGTAGT------------------------------AACC----------------ATAAAAAAAAAAAATAT-
droSim2 2l:6670407-6670545 + dsi-mir-932 Known_mirbase --------------------------------GT--ATTGGTTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTGTT----TAATTATTTACTGCAAGCGCTGCGGATTTGGCAACTTTGAC-GACCTTCATCA--TCT---GC---------T----AGAGAAATGTGAA--ATTTGTAGT------------------------------AACC----------------ATAAAAAGC---------
droSec2 scaffold_3:2435762-2435897 + dse_19 confident --------------------------------GT--ATTGGTTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTGTT----TAATTATTTACTGCAAGCGCTGCGGATTTGGCAACTTTGAC-GACCTTCATCA--TCT---GC---------T----AGAGAAATGTGAA--ATTTGTAGT------------------------------AACC----------------ATAA---AA---------
droYak3 2L:6007692-6007828 - dya_12 confident T-------------------------------AT--ATTGGCTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTGCT----TAATTATTTACTGCAAGCGCTGCGGATTTGGCAACTTTGAC-GACCTCCATCA--TCT---GC---------T----AGAGAAATGTGAA--ATTGGTAGT------------------------------AACC----------------ATAA---AA---------
droEre2 scaffold_4929:15815538-15815672 + der_11 confident --------------------------------GT--ATTGGTTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTCTT----TACTTATTTACTGCAAGCGCTGCGGATTTGGCAACTTTGAC-GACCTTAATCA--TCT---GGAGC------T----AGAGACGTGTGAT--ATTTGTAGA------------------------------TGGC-----------------------AT---------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
AAATATTTAATCCGGTGTTTCTGGTCGTTACTGC--ATTGGTGTCGTGGCTCTCAATTCCGTAGTGCATTGCAGTTTAATATAATTATCAACAACTGCAAGCGCTGTGGACTTGGCAGCTCCGAT-AGCCGCAAACACAGCT---GC----------------AGCAGC--GAT-----A---G---------------------------TGATAGCG----------------ATGA---AC---------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
....................................................TCAATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................23117110.00171101617110075628537724
....................................................TCAATTCCGTAGTGCATTGCAG...................................................................................................................................................................................2216322.0063228108627173382101
....................................................TCAATTCCGTAGTGCATTGC.....................................................................................................................................................................................201973.009730412347304
...............................................................................................TGCAAGCGCTGTGGACTTGGCA........................................................................................................................................221901.0090127712523035423
....................................................TCAATTCCGTAGTGCATTGCA....................................................................................................................................................................................211794.0079406039438410
....................................................TCAATTCCGTAGTGCATTGCAGTT.................................................................................................................................................................................241342.0034203118913910
...............................................................................................TGCAAGCGCTGTGGACTTGGC.........................................................................................................................................211297.00297201611113524
....................................................TCAATTCCGTAGTGCATTG......................................................................................................................................................................................191161.001611810271141
......................................................AATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................211156.0015601073820
...............................................................................................TGCAAGCGCTGTGGACTTGG..........................................................................................................................................20172.007200026397
....................................................TCAATTCCGTAGTGCATTGCAGA..................................................................................................................................................................................23159.005900023351
......................................................AATTCCGTAGTGCATTGCAG...................................................................................................................................................................................20159.005900023360
....................................................TCAATTCCGTAGTGCATTGCAGC..................................................................................................................................................................................23158.005820023312
.....................................................CAATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................22139.003909016140
....................................................TCAATTCCGTAGTGCATTGCAGTA.................................................................................................................................................................................24138.003800021161
....................................................TCAATTCCGTAGTGCATTGCAT...................................................................................................................................................................................22128.002800010180
...............................................................................................TGCAAGCGCTGTGGACTTG...........................................................................................................................................19127.00270001206
....................................................TCAATTCCGTAGTGCATTGCAA...................................................................................................................................................................................22125.002501113100
..............................................................................................CTGCAAGCGCTGTGGACTTGGCA........................................................................................................................................23118.00181000260
...............................................................................................TGCAAGCGCTGTGGACTTGGCG........................................................................................................................................22118.00181700010
....................................................TCAATTCCGTAGTGCATTGCAGG..................................................................................................................................................................................23116.0016400660
...............................................................................................TGCAAGCGCTGTGGACTTGGT.........................................................................................................................................21115.00150005100
.....................................................CAATTCCGTAGTGCATTGCAG...................................................................................................................................................................................21113.0013080410
......................................................AATTCCGTAGTGCATTGC.....................................................................................................................................................................................18111.0011000470
....................................................TCAATTCCGTAGTGCATTGCAGTC.................................................................................................................................................................................24111.0011000290
...................................................CTCAATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................24111.0011001541
....................................................TCAATTCCGTAGTGCATTGCAC...................................................................................................................................................................................22111.0011000470
...............................................................................................TGCAAGCGCTGTGGACTTGGCT........................................................................................................................................2218.008010250
......................................................AATTCCGTAGTGCATTGCA....................................................................................................................................................................................1917.007000430
.......................................................ATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................2016.006000150
....................................................TCAATTCCGTAGTGCATTGCT....................................................................................................................................................................................2115.005000140
....................................................TCAATTCCGTAGTGCATTGCAGTTT................................................................................................................................................................................2515.005000500
..............................................................................................CTGCAAGCGCTGTGGACTTGGC.........................................................................................................................................2215.005200210
........................................................TTCCGTAGTGCATTGCAGT..................................................................................................................................................................................1915.005000230
......................................................AATTCCGTAGTGCATTGCAGTT.................................................................................................................................................................................2215.005000320
....................................................TCAATTCCGTAGTGCATT.......................................................................................................................................................................................1815.005100040
....................................................TCAATTCCGTAGTGCATTGCATC..................................................................................................................................................................................2314.004000040
....................................................TCAATTCCGTAGTGCATTGCG....................................................................................................................................................................................2114.004000130
....................................................TCAATTCCGTAGTGCATTGA.....................................................................................................................................................................................2014.004000220
.......................................................ATTCCGTAGTGCATTGCAG...................................................................................................................................................................................1914.004000130
.....................................................CAATTCCGTAGTGCATTGCA....................................................................................................................................................................................2014.004010210
....................................................TCAATTCCGTAGTGCATTGCCT...................................................................................................................................................................................2214.004000130
...................................................CTCAATTCCGTAGTGCATTGCAG...................................................................................................................................................................................2314.004000220
...............................TGC--ATTGGTGTCGTGGCTC.........................................................................................................................................................................................................1914.004001210
.................................................................................................CAAGCGCTGTGGACTTGGCA........................................................................................................................................2013.003200100
...............................................................................................TGCAAGCGCTGTGGACTTGGA.........................................................................................................................................2113.003000030
....................................................TCAATTCCGTAGTGCATTGCATG..................................................................................................................................................................................2313.003000120
....................................................TCAATTCCGTAGTGCATTGCAGTG.................................................................................................................................................................................2413.003000210
....................................................TCAATTCCGTAGTGCATTGCC....................................................................................................................................................................................2113.003000120
......................................................AATTCCGTAGTGCATTGCAGTA.................................................................................................................................................................................2212.002000200
..................................................................................................AAGCGCTGTGGACTTGGCA........................................................................................................................................1912.002000110
dp5
AAATATTTAATCCGGTGTTTCTGGTCGTTACTGC--ATTGGTGTCGTGGCTCTCAATTCCGTAGTGCATTGCAGTTTAATATAATTATCAACAACTGCAAGCGCTGTGGACTTGGCAGCTCCGAT-AGCCGCAAACACAGCT---GC----------------AGCAGC--GAT-----A---G---------------------------TGATAGCG----------------ATGA---AT---------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
....................................................TCAATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................23116475.00164754895771771641463972040569
....................................................TCAATTCCGTAGTGCATTGCAG...................................................................................................................................................................................2213303.0033030529177041519402701556
....................................................TCAATTCCGTAGTGCATTGCAGC..................................................................................................................................................................................2311735.0017350022114921210000
....................................................TCAATTCCGTAGTGCATTGCAGTT.................................................................................................................................................................................241685.0068506034426141433005
....................................................TCAATTCCGTAGTGCATTGCA....................................................................................................................................................................................211540.00540086113833074010
...............................................................................................TGCAAGCGCTGTGGACTTGGCA........................................................................................................................................221536.00536189348713618770274
....................................................TCAATTCCGTAGTGCATTGC.....................................................................................................................................................................................201327.00327019014011634000
...............................................................................................TGCAAGCGCTGTGGACTTGGC.........................................................................................................................................211231.002313381047910715002
.....................................................CAATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................221173.001730766761122000
......................................................AATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................211120.00120034388651001
...............................................................................................TGCAAGCGCTGTGGACTTGG..........................................................................................................................................20181.0081031030374015
...................................................CTCAATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................24180.008001472120000
....................................................TCAATTCCGTAGTGCATTGCAGA..................................................................................................................................................................................23157.0057050301201000
.....................................................CAATTCCGTAGTGCATTGCAG...................................................................................................................................................................................21150.005004005040001
....................................................TCAATTCCGTAGTGCATTGCAGTA.................................................................................................................................................................................24150.0050000322160000
....................................................TCAATTCCGTAGTGCATTGCAGTC.................................................................................................................................................................................24148.004800639030000
....................................................TCAATTCCGTAGTGCATTG......................................................................................................................................................................................19135.003514020270010
.....................................................CAATTCCGTAGTGCATTGCAGC..................................................................................................................................................................................22123.002300221000000
....................................................TCAATTCCGTAGTGCATTGCAGG..................................................................................................................................................................................23123.002300317030000
....................................................TCAATTCCGTAGTGCATTGCAC...................................................................................................................................................................................22123.002300116060000
...................................................CTCAATTCCGTAGTGCATTGCAGC..................................................................................................................................................................................24119.001900118000000
......................................................AATTCCGTAGTGCATTGCAG...................................................................................................................................................................................20119.001903010150000
.......................................................ATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................20119.001904111030000
..............................................................................................CTGCAAGCGCTGTGGACTTGGCA........................................................................................................................................23116.00160212280001
....................................................TCAATTCCGTAGTGCATTGCAT...................................................................................................................................................................................22113.00130108040000
..............................................................................................CTGCAAGCGCTGTGGACTTGGC.........................................................................................................................................22113.00130120240004
......................................................AATTCCGTAGTGCATTGCAGC..................................................................................................................................................................................21113.001300112000000
...................................................CTCAATTCCGTAGTGCATTGCAG...................................................................................................................................................................................23113.001300010030000
.....................................................CAATTCCGTAGTGCATTGCAGTT.................................................................................................................................................................................23112.00120703020000
.....................................................CAATTCCGTAGTGCATTGCA....................................................................................................................................................................................20110.00100702010000
....................................................TCAATTCCGTAGTGCATTGCAA...................................................................................................................................................................................22110.00100102070000
....................................................TCAATTCCGTAGTGCATTGCAGTTT................................................................................................................................................................................2519.0090206010000
.....................................................CAATTCCGTAGTGCATTGC.....................................................................................................................................................................................1918.0080602000000
.........................................................TCCGTAGTGCATTGCAGT..................................................................................................................................................................................1818.0080205010000
..................................................TCTCAATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................2517.0070007000000
...............................................................................................TGCAAGCGCTGTGGACTTGGT.........................................................................................................................................2117.0070200050000
......................................................AATTCCGTAGTGCATTGCAGTT.................................................................................................................................................................................2215.0050102020000
................................................................................................GCAAGCGCTGTGGACTTGGC.........................................................................................................................................2015.0050500000000
...............................TGC--ATTGGTGTCGTGGCTC.........................................................................................................................................................................................................1914.0040001030000
....................................................TCAATTCCGTAGTGCATTGCT....................................................................................................................................................................................2114.0040000040000
...................................................CTCAATTCCGTAGTGCATTGCAGTT.................................................................................................................................................................................2514.0040004000000
...............................................................................................TGCAAGCGCTGTGGACTTG...........................................................................................................................................1914.0040001021000
.......................................................ATTCCGTAGTGCATTGCAGC..................................................................................................................................................................................2014.0040013000000
...............................................................................................TGCAAGCGCTGTGGACTTGGCAT.......................................................................................................................................2314.0040002020000
...................................................CTCAATTCCGTAGTGCATTGCA....................................................................................................................................................................................2214.0040004000000
...........................................................................TTAATATAATTATCAACAAC..............................................................................................................................................................2014.0040004000000
....................................................TCAATTCCGTAGTGCATTGCAGTAA................................................................................................................................................................................2514.0040004000000
......................................................AATTCCGTAGTGCATTGCA....................................................................................................................................................................................1913.0030000030000
....................................................TCAATTCCGTAGTGCATTGCAGTG.................................................................................................................................................................................2413.0030001020000
....................................................TCAATTCCGTAGTGCATTGCAAC..................................................................................................................................................................................2313.0030003000000
..................................................................................................AAGCGCTGTGGACTTGGC.........................................................................................................................................1812.0020100001000
......................................................AATTCCGTAGTGCATTGCAGTTT................................................................................................................................................................................2312.0020101000000
....................................................TCAATTCCGTAGTGCATTGCC....................................................................................................................................................................................2112.0020001010000
....................................................TCAATTCCGTAGTGCATTGCAGTTA................................................................................................................................................................................2512.0020001010000
................................GC--ATTGGTGTCGTGGCTC.........................................................................................................................................................................................................1812.0020000020000
......................................................AATTCCGTAGTGCATTGC.....................................................................................................................................................................................1812.0020100010000
...............................................................................................TGCAAGCGCTGTGGACTTGGCT........................................................................................................................................2212.0020000020000
........................................................TTCCGTAGTGCATTGCAGT..................................................................................................................................................................................1912.0020001010000
................................................................................................GCAAGCGCTGTGGACTTGG..........................................................................................................................................1912.0020200000000
....................................................TCAATTCCGTAGTGCATTGCG....................................................................................................................................................................................2112.0020001010000
...............................................................................................TGCAAGCGCTGTGGACTTGGCAA.......................................................................................................................................2312.0020002000000
....................................................TCAATTCCGTAGTGCATT.......................................................................................................................................................................................1812.0020200000000
..............................................................................................CTGCAAGCGCTGTGGACTTGG..........................................................................................................................................2112.0020100010000
...............................................................................................TGCAAGCGCTGTGGACTTGGCC........................................................................................................................................2212.0020001010000
..................................................TCTCAATTCCGTAGTGCATTGCAGC..................................................................................................................................................................................2512.0020002000000
........................................................TTCCGTAGTGCATTGCAG...................................................................................................................................................................................1812.0020200000000
................................................................................................GCAAGCGCTGTGGACTTGGCA........................................................................................................................................2112.0020200000000
droWil2
---------------------------------------GGCATTGTAGCTATCAATTCCGTAGTGCATTGCAGTTGGTA----CTAGAAAATACTGCAAGCGCTGCGGACTTGCTAACTCTGAT-GACCATAAAACCACCT---------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
....................................................TCAATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................23116026.00160262360351159216510991
....................................................TCAATTCCGTAGTGCATTGCAG...................................................................................................................................................................................2214323.004323109319423672946
....................................................TCAATTCCGTAGTGCATTGCA....................................................................................................................................................................................2113916.003916126275143744
....................................................TCAATTCCGTAGTGCATTG......................................................................................................................................................................................1912997.0029972844000153
....................................................TCAATTCCGTAGTGCATTGC.....................................................................................................................................................................................2011896.0018965934721290
...............................................................................................TGCAAGCGCTGCGGACTTGCTA........................................................................................................................................221514.0051410751141260
....................................................TCAATTCCGTAGTGCATTGCAGG..................................................................................................................................................................................231202.002021980004
....................................................TCAATTCCGTAGTGCATTGCAGTT.................................................................................................................................................................................241179.0017922305149
....................................................TCAATTCCGTAGTGCATTGCAGC..................................................................................................................................................................................231171.0017115100119
......................................................AATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................211112.001120111298
...............................................................................................TGCAAGCGCTGCGGACTTGC..........................................................................................................................................20187.0087850002
...............................................................................................TGCAAGCGCTGCGGACTTG...........................................................................................................................................19175.00754700028
...............................................................................................TGCAAGCGCTGCGGACTTGCT.........................................................................................................................................21170.00704100722
....................................................TCAATTCCGTAGTGCATTGCAGTA.................................................................................................................................................................................24163.0063100656
.....................................................CAATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................22158.00584190134
....................................................TCAATTCCGTAGTGCATTGCAGA..................................................................................................................................................................................23145.0045102042
......................................................AATTCCGTAGTGCATTGCA....................................................................................................................................................................................19144.0044100043
......................................................AATTCCGTAGTGCATTGCAG...................................................................................................................................................................................20130.0030210027
....................................................TCAATTCCGTAGTGCATTGCAA...................................................................................................................................................................................22119.0019010018
.....................................................CAATTCCGTAGTGCATTGCAG...................................................................................................................................................................................21119.0019311005
....................................................TCAATTCCGTAGTGCATTGCAC...................................................................................................................................................................................22118.0018160002
....................................................TCAATTCCGTAGTGCATTGCAT...................................................................................................................................................................................22111.001111009
.......................................................ATTCCGTAGTGCATTGCAG...................................................................................................................................................................................19111.001180003
....................................................TCAATTCCGTAGTGCATT.......................................................................................................................................................................................1818.00850003
........................................................TTCCGTAGTGCATTGCAGT..................................................................................................................................................................................1918.00812005
....................................................TCAATTCCGTAGTGCATTGCC....................................................................................................................................................................................2117.00700007
.....................................................CAATTCCGTAGTGCATTGCA....................................................................................................................................................................................2017.00702005
....................................................TCAATTCCGTAGTGCATTGCT....................................................................................................................................................................................2117.00730004
.....................................................CAATTCCGTAGTGCATTGC.....................................................................................................................................................................................1917.00700007
.......................................................ATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................2016.00630003
...............................................................................................TGCAAGCGCTGCGGACTTGCC.........................................................................................................................................2116.00650001
.........................................................TCCGTAGTGCATTGCAGT..................................................................................................................................................................................1816.00650001
....................................................TCAATTCCGTAGTGCATTGA.....................................................................................................................................................................................2015.00500005
.....................................................CAATTCCGTAGTGCATTG......................................................................................................................................................................................1815.00540001
........................................................TTCCGTAGTGCATTGCAG...................................................................................................................................................................................1815.00531001
......................................................AATTCCGTAGTGCATTGC.....................................................................................................................................................................................1815.00500005
....................................................TCAATTCCGTAGTGCATTGCAGTG.................................................................................................................................................................................2415.00500005
..................................................................................................AAGCGCTGCGGACTTGCT.........................................................................................................................................1814.00440000
....................................................TCAATTCCGTAGTGCATTGAGT...................................................................................................................................................................................2214.00400004
..............................................................................................CTGCAAGCGCTGCGGACTTGC..........................................................................................................................................2114.00440000
....................................................TCAATTCCGTAGTGCATTA......................................................................................................................................................................................1913.00330000
....................................................TCAATTCCGTAGTGCATTT......................................................................................................................................................................................1913.00310002
....................................................TCAATTCCGTAGTGCATTGCAGAA.................................................................................................................................................................................2413.00311001
....................................................TCAATTCCGTAGTGCATTGCG....................................................................................................................................................................................2113.00310002
.....................................................CAATTCCGTAGTGCATTGCAGTT.................................................................................................................................................................................2313.00301002
......................................................AATTCCGTAGTGCATTGCAGTA.................................................................................................................................................................................2212.00200002
....................................................TCAATTCCGTAGTGCATTGCAGTGT................................................................................................................................................................................2512.00200002
..............................................................................................CTGCAAGCGCTGCGGACTTGCT.........................................................................................................................................2212.00220000
............................................................................................TACTGCAAGCGCTGCGGACTTG...........................................................................................................................................2212.00220000
....................................................TCAATTCCGTAGTGCATTGG.....................................................................................................................................................................................2012.00220000
....................................................TCAATTCCGTAGTGCATTGCAGTTT................................................................................................................................................................................2512.00200011
...................................................ATCAATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................2412.00202000
....................................................TCAATTCCGTAGTGCATTGCAGTAA................................................................................................................................................................................2512.00200002
....................................................TCAATTCCGTAGTGCATTGCAGTC.................................................................................................................................................................................2412.00200011
......................................................AATTCCGTAGTGCATTGCAGTT.................................................................................................................................................................................2212.00200002
....................................................TCAATTCCGTAGTGCATGCA.....................................................................................................................................................................................2061.50900009
...............................................................................................TGCAAGCGCTGCGGACTTGCG.........................................................................................................................................2111.00110000
....................................................TCAATTCCGTAGTGCATTGCAGTTAA...............................................................................................................................................................................2611.00100001
......................................................AATTCCGTAGTGCATTGT.....................................................................................................................................................................................1811.00100001
...............................................................................................TGCAAGCGCTGCGGACTTGCTC........................................................................................................................................2211.00100010
droVir3
--------------------------------------TGGCAGCGAAACTCTCAATTCCGTAGTGCATTGCAGTTGATT----TTAGGAATTACTGCAAGCGCTGCAGAATTGGCAGCTCCGCT-GACCGCAGACA--ACGTATGGAATCGCAGCTCATCGGATGAACATGAA--AGATAT---------------------------------AGAT----------------ATAA---AA---------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
....................................................TCAATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................23121021.00210211326314793266676145662170511519921178434111411067087313171459309291291809622311322100574583241613041300110000000100001313221153965242022254547818291102030348014174755
....................................................TCAATTCCGTAGTGCATTGCAG...................................................................................................................................................................................22118191.0018191218815941322339159250040102173155969610641219500511334150915036525312910438323895201235730821642460010700000000000000000012119995601733075591110546201352263026
....................................................TCAATTCCGTAGTGCATTGCA....................................................................................................................................................................................2117655.0076552344631374836251400006673812944165712197668156230847534385923971033064623933214411100000000000000000004100090462002321013420013
....................................................TCAATTCCGTAGTGCATTGC.....................................................................................................................................................................................2014144.00414410385168143795421210041991641091873071303735622044231683667520512272444116171000000000000000002051040100130002131215221010012
....................................................TCAATTCCGTAGTGCATTG......................................................................................................................................................................................1913632.0036325221256901236242040100333415194130405240264742134134278208841103810300000000000000000001221500300019212919151500000
...............................................................................................TGCAAGCGCTGCAGAATTGGCA........................................................................................................................................2211096.00109664061411441340200004725152518171340545843754297340120103261300011000100000000062014370122653571244414201413133230
....................................................TCAATTCCGTAGTGCATTGCAA...................................................................................................................................................................................221679.00679021570711600100001394614102911438161793841827156757564400000000000000000000141002111311100071018
....................................................TCAATTCCGTAGTGCATTGCAGTT.................................................................................................................................................................................241598.00598065151441210000018037223325231364911922561581502001032400000000000000000010474021500011010010022
...............................................................................................TGCAAGCGCTGCAGAATTGGC.........................................................................................................................................211385.003857219442002000010100001030001061000030001000000000000000000022131000248306150532817185267
....................................................TCAATTCCGTAGTGCATTGCAGTAA................................................................................................................................................................................251338.0033800117100000000012030202201062002100020511410000000000000000000001300393258000000417114058
....................................................TCAATTCCGTAGTGCATTGCAT...................................................................................................................................................................................221243.002430231014160000003214339583303127301123064100580000000000000000000217301710400000000000
....................................................TCAATTCCGTAGTGCATTGCAGTC.................................................................................................................................................................................241236.002360114561720000000300201121110110322514330160000728000000000000000000021400300000001200000
...............................................................................................TGCAAGCGCTGCAGAATTGGCAA.......................................................................................................................................231187.00187005100000000000000001000000000000020101000000000000000000000100135438100000279103047
......................................................AATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................211181.001810011070201000001892951201473222142000100011710000000000000000000139500100001100000000
....................................................TCAATTCCGTAGTGCATTGCC....................................................................................................................................................................................211172.0017201171101000000074235551501011120205170400001120000000000000000000017001200000000100100
.....................................................CAATTCCGTAGTGCATTGCAG...................................................................................................................................................................................211162.00162001420200000000034101003200001000000000000000000000000000000002000000000000100000
....................................................TCAATTCCGTAGTGCATTGCAGTA.................................................................................................................................................................................241160.00160001434000000000970625035026000202109110140000000000000000000011600003090010009311110
.....................................................CAATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................221158.00158001301100000000023111301110000001000000010000000000000000000005100400000000000000
......................................................AATTCCGTAGTGCATTGCAG...................................................................................................................................................................................201157.001570019041500000001512789501611503106203002010700000000000000000000014100000000000000000
....................................................TCAATTCCGTAGTGCATTGCAGC..................................................................................................................................................................................231140.001400361613000000000021110031000000100000000410000000000000000000023000000000000001000
....................................................TCAATTCCGTAGTGCATTGCAGA..................................................................................................................................................................................231111.0011100924010000000323532074010100001002020800000000000000000000015000501700000191336
......................................................AATTCCGTAGTGCATTGCA....................................................................................................................................................................................19176.007600500030000000233440096001107420011000220000000000000000000016000000000000000000
....................................................TCAATTCCGTAGTGCATTGCAAA..................................................................................................................................................................................23157.005700140000000000000100001004210120010600140000000000000000000000000211200000011038
...............................................................................................TGCAAGCGCTGCAGAATTGG..........................................................................................................................................20151.00510052130000000010000000301000431501200002000000000000000000008000012100000040001
....................................................TCAATTCCGTAGTGCATTGCAGG..................................................................................................................................................................................23150.005023211002000000002100000110100000000000000000000000000000000004100000000100000000
....................................................TCAATTCCGTAGTGCATT.......................................................................................................................................................................................18149.004901050004000000021312114211000010200000020000000000000000000003001100000100000000
....................................................TCAATTCCGTAGTGCATTGCAGTCC................................................................................................................................................................................25148.00480000111000000000000050000000883806000025000000000000000000000000000000000000000
.....................................................CAATTCCGTAGTGCATTGCA....................................................................................................................................................................................20147.004700400000000000000001002101100000000000000000000000000000000001000000000000000000
....................................................TCAATTCCGTAGTGCATTGCAGTTT................................................................................................................................................................................25141.00410040000001000063182001500100201000000010000000000000000000001001000000010000020
....................................................TCAATTCCGTAGTGCATTGCAGTTA................................................................................................................................................................................25137.00370040100000000040011102101000000010101010000000000000000000001000200600000040004
....................................................TCAATTCCGTAGTGCATTGCAGTTC................................................................................................................................................................................25135.003510200200000100000000100001001022604000012000000000000000000000000000000000000000
.......................................................ATTCCGTAGTGCATTGCAG...................................................................................................................................................................................19134.00340050002000000021120102030000210101100031000000000000000000001000000200000010001
.......................................................ATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................20130.00300061001000000021120001201020000000000010000000000000000000003000300200000010000
...................................................CTCAATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................24130.00300064100000000003020103100001110000000010000000000000000000005000000000000000000
....................................................TCAATTCCGTAGTGCATTGCAGTG.................................................................................................................................................................................24128.00280010100000000032042100302100100000100000000000000000000000004100000000000010000
....................................................TCAATTCCGTAGTGCATTGA.....................................................................................................................................................................................20126.002600102200000000010001000000000110011000040000000000000000000010000000000000100000
......................................................AATTCCGTAGTGCATTGC.....................................................................................................................................................................................18126.00260010101000000012103100210000121000000020000000000000000000006000000000000000000
....................................................TCAATTCCGTAGTGCATTGCT....................................................................................................................................................................................21126.002602100100000000010111030010001001000000000000000000000000000011000000000000100000
....................................................TCAATTCCGTAGTGCATTGCCT...................................................................................................................................................................................22126.00260010010000000000000000100100433300000003000000000000000000003000001000000000011
...............................................................................................TGCAAGCGCTGCAGAATTGGCAT.......................................................................................................................................23125.00250020000000000000000000000000010000000010000000000000000000000000000500000042244
...................................................CTCAATTCCGTAGTGCATTGCAG...................................................................................................................................................................................23124.00240070100000000021010101100100300100000010000000000000000000003000000000000000000
....................................................TCAATTCCGTAGTGCATTGCAAAA.................................................................................................................................................................................24120.00200090000000000000000000001011010000100010000000000000000000000000000200000010020
....................................................TCAATTCCGTAGTGCATTGCAC...................................................................................................................................................................................22119.00190510000000000001102000200000100001000000000000000000000000005000000000000000000
.....................................................CAATTCCGTAGTGCATTGC.....................................................................................................................................................................................19119.001900180000000000000000001000000000000000000000000000000000000000000000000000000000
....................................................TCAATTCCGTAGTGCATTGCCC...................................................................................................................................................................................22116.00160050000000000000000010010000111101000012000000000000000000001000000000000000000
...............................................................................................TGCAAGCGCTGCAGAATTGGCC........................................................................................................................................22116.00162000002000000010010000000000000000000000000000000000000000000000000100200112030
....................................................TCAATTCCGTAGTGCATTGCAGTAT................................................................................................................................................................................25116.00160030010000000011001000111000000000000000000000000000000000002000001000000020001
....................................................TCAATTCCGTAGTGCATTGCAGTCT................................................................................................................................................................................25115.00150010001000000000000010000000323100000002000000000000000000000000000000000010000
...............................................................................................TGCAAGCGCTGCAGAATTGGCAAA......................................................................................................................................24113.00130010000000000000000000000100000000000000000000000000000000000000010100000002313
.........................................................TCCGTAGTGCATTGCAGT..................................................................................................................................................................................18112.00120060001000000000000000100000010000000020000000000000000000001000000000000000000
.....................................................CAATTCCGTAGTGCATTGCAA...................................................................................................................................................................................21112.001200120000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................TCAATTCCGTAGTGCATTGT.....................................................................................................................................................................................20112.00120000010000000000000010001000020103000001000000000000000000002000000000000000000
....................................................TCAATTCCGTAGTGCATTGCCA...................................................................................................................................................................................22111.00110030001000000001000001000002000001000020000000000000000000000000000000000000000
....................................................TCAATTCCGTAGTGCATTGCAGAAA................................................................................................................................................................................25111.00110070000000000000000000000000000000000000000000000000000000000000000100000011100
........................................................TTCCGTAGTGCATTGCAG...................................................................................................................................................................................18110.00100020200000000020010000001000000000000001000000000000000000001000000000000000000
....................................................TCAATTCCGTAGTGCATTGCG....................................................................................................................................................................................21110.00100110000000000013000000000000010000000001000000000000000000001000100000000000000
....................................................TCAATTCCGTAGTGCATTGCAGTTG................................................................................................................................................................................2519.0090010101000000000100100300000000000000000000000000000000000001000000000000000000
.....................................................CAATTCCGTAGTGCATTGCAT...................................................................................................................................................................................2119.0090090000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................TTCCGTAGTGCATTGCAGT..................................................................................................................................................................................1918.0080040001100000000000000000000000000000010000000000000000000001000000000000000000
......................................................AATTCCGTAGTGCATTGCAGTT.................................................................................................................................................................................2218.0080000000000000020000001111000000000000011000000000000000000000000000000000000000
...................................................CTCAATTCCGTAGTGCATTGCA....................................................................................................................................................................................2217.0070020000000000000030000000000010100000000000000000000000000000000000000000000000
.....................................................CAATTCCGTAGTGCATTG......................................................................................................................................................................................1817.0070250000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................TGCAAGCGCTGCAGAATTGGCAC.......................................................................................................................................2317.0070000000000000000000000000000000001000000000000000000000000000000000100000002012
...............................................................................................TGCAAGCGCTGCAGAATTGGCATA......................................................................................................................................2417.0070001000000000000000000000000000000000000000000000000000000000000001100000001021
................................................................................................GCAAGCGCTGCAGAATTGGCA........................................................................................................................................2117.0070070000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................TGCAAGCGCTGCAGAATTG...........................................................................................................................................1917.0070000001000000000001010100000100200000000000000000000000000000000000000000000000
....................................................TCAATTCCGTAGTGCATTGCAGTCA................................................................................................................................................................................2516.0060010000000000000000000000000000000000030000000000000000000000000000100000010000
...................................................CTCAATTCCGTAGTGCATTGC.....................................................................................................................................................................................2116.0060000000000000000001101100000001000010000000000000000000000000000000000000000000
...................................................................................................AGCGCTGCAGAATTGGCA........................................................................................................................................1816.0060300000000000000000000100000010000000000000000000000000000000000000000100000000
....................................................TCAATTCCGTAGTGCATTGCATC..................................................................................................................................................................................2316.0060001000000000000000010000000011100000001000000000000000000000000000000000000000
......................................................AATTCCGTAGTGCATTGCAA...................................................................................................................................................................................2016.0060010000000000000000002000000000100110000000000000000000000000000000000000000000
....................................................TCAATTCCGTAGTGCATTT......................................................................................................................................................................................1915.0050200000000000010001000000000000100000000000000000000000000000000000000000000000
....................................................TCAATTCCGTAGTGCATTGCAGTGA................................................................................................................................................................................2515.0050000000000000000000000000100000000000010000000000000000000002000000000000010000
....................................................TCAATTCCGTAGTGCATTGCAGTAAC...............................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000300000010001
....................................................TCAATTCCGTAGTGCATTGCTA...................................................................................................................................................................................2215.0050030000000000000000000000000100100000000000000000000000000000000000000000000000
.......................................................ATTCCGTAGTGCATTGCA....................................................................................................................................................................................1814.0040010001000000010001000000000000000000000000000000000000000000000000000000000000
.....................................................CAATTCCGTAGTGCATTGCC....................................................................................................................................................................................2014.0040040000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................CAATTCCGTAGTGCATTGCAGTC.................................................................................................................................................................................2314.0040030000000000000000000000000100000000000000000000000000000000000000000000000000
...............................................................................................TGCAAGCGCTGCAGAATTGGCT........................................................................................................................................2214.0040001000000000000000000000000000000000000000000000000000000000000000000200000001
....................................................TCAATTCCGTAGTGCATTGCAGTAAT...............................................................................................................................................................................2614.0040001000000000000000000000000000000100000000000000000000000000000000000000010001
.......................................................ATTCCGTAGTGCATTGCAGTCA................................................................................................................................................................................2213.0030000020000000000100000000000000000000000000000000000000000000000000000000000000
droMoj3
---------------------------------C--AATGGCTGCGTAACTTTCAATTCCGTAGTGCATTGCAGTTGATT----TAAGGAATTACTGCAAGCGCTGCAGAATTGGCAGCTCCGTT-GACCACAGACA--------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
....................................................TCAATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................23114127.00141278056550036953714587
....................................................TCAATTCCGTAGTGCATTGCAG...................................................................................................................................................................................2215336.0053364963190828282081
....................................................TCAATTCCGTAGTGCATTGC.....................................................................................................................................................................................2014807.00480788019622709345
....................................................TCAATTCCGTAGTGCATTGCA....................................................................................................................................................................................2111512.0015121071609776217
....................................................TCAATTCCGTAGTGCATTG......................................................................................................................................................................................191768.0076824030742809
...............................................................................................TGCAAGCGCTGCAGAATTGGCA........................................................................................................................................221659.006593119230291853
....................................................TCAATTCCGTAGTGCATTGCAGC..................................................................................................................................................................................231196.00196006261640
....................................................TCAATTCCGTAGTGCATTGCAGTT.................................................................................................................................................................................241185.001852105888711
......................................................AATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................211139.00139111566650
.....................................................CAATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................22195.009570071260
...............................................................................................TGCAAGCGCTGCAGAATTGGC.........................................................................................................................................21190.009033324570
......................................................AATTCCGTAGTGCATTGCAG...................................................................................................................................................................................20153.005330173300
....................................................TCAATTCCGTAGTGCATTGCAGTA.................................................................................................................................................................................24151.005120183010
...............................................................................................TGCAAGCGCTGCAGAATTGG..........................................................................................................................................20148.004850172600
....................................................TCAATTCCGTAGTGCATTGCAGA..................................................................................................................................................................................23148.004820172900
......................................................AATTCCGTAGTGCATTGC.....................................................................................................................................................................................18143.004320182300
.....................................................CAATTCCGTAGTGCATTGCAG...................................................................................................................................................................................21143.00433801400
....................................................TCAATTCCGTAGTGCATTGCAT...................................................................................................................................................................................22129.002900161300
....................................................TCAATTCCGTAGTGCATTGCAA...................................................................................................................................................................................22126.002620111300
....................................................TCAATTCCGTAGTGCATTGCT....................................................................................................................................................................................21121.00210061500
......................................................AATTCCGTAGTGCATTGCA....................................................................................................................................................................................19117.00171061000
.....................................................CAATTCCGTAGTGCATTGC.....................................................................................................................................................................................19116.0016803500
.....................................................CAATTCCGTAGTGCATTGCA....................................................................................................................................................................................20115.00151500000
....................................................TCAATTCCGTAGTGCATTGCAGTG.................................................................................................................................................................................24114.00140031100
....................................................TCAATTCCGTAGTGCATTGCC....................................................................................................................................................................................21112.0012007500
....................................................TCAATTCCGTAGTGCATTGA.....................................................................................................................................................................................20110.0010004501
.......................................................ATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................20110.0010204310
....................................................TCAATTCCGTAGTGCATTGT.....................................................................................................................................................................................2019.009102600
....................................................TCAATTCCGTAGTGCATTGCAGG..................................................................................................................................................................................2318.008002510
....................................................TCAATTCCGTAGTGCATTGCAC...................................................................................................................................................................................2217.007000520
....................................................TCAATTCCGTAGTGCATTGCG....................................................................................................................................................................................2116.006103200
....................................................TCAATTCCGTAGTGCATTGCAGTTT................................................................................................................................................................................2515.005000500
....................................................TCAATTCCGTAGTGCATTT......................................................................................................................................................................................1915.005004100
...............................................................................................TGCAAGCGCTGCAGAATTGGCT........................................................................................................................................2215.005003200
........................................................TTCCGTAGTGCATTGCAGT..................................................................................................................................................................................1915.005102020
.........................................................TCCGTAGTGCATTGCAGT..................................................................................................................................................................................1815.005300110
....................................................TCAATTCCGTAGTGCATTGCAGTC.................................................................................................................................................................................2414.004000103
....................................................TCAATTCCGTAGTGCATTGCAGTGA................................................................................................................................................................................2514.004002200
......................................................AATTCCGTAGTGCATTG......................................................................................................................................................................................1714.004000400
.......................................................ATTCCGTAGTGCATTGCAG...................................................................................................................................................................................1914.004003100
...............................................................................................TGCAAGCGCTGCAGAATTGGCAT.......................................................................................................................................2314.004002200
...............................................................................................TGCAAGCGCTGCAGAATTGGCC........................................................................................................................................2214.004002200
....................................................TCAATTCCGTAGTGCATTGCAGTTA................................................................................................................................................................................2514.004100111
...............................................................................................TGCAAGCGCTGCAGAATTG...........................................................................................................................................1914.004002200
....................................................TCAATTCCGTAGTGCATT.......................................................................................................................................................................................1814.004002200
...............................................................................................TGCAAGCGCTGCAGAATTGGT.........................................................................................................................................2113.003100200
.....................................................CAATTCCGTAGTGCATTGCAGTT.................................................................................................................................................................................2313.003300000
....................................................TCAATTCCGTAGTGCATTGCAGTGT................................................................................................................................................................................2512.002000200
droGri2
T-------------------------------GC--AATGGCAATGTAACTTTCAATTCCGTAGTGCATTGCAGTTGATT----TAAGCAACTACTGCATGCCCTGCAGAATTGGCAGCTCTGTT-GACCACATACA--GCA---A----------------ATGGTGTAAGTA--ACTAATATT------------------------------GACT----------------ATAT---AT---------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
....................................................TCAATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................23181.00815031
....................................................TCAATTCCGTAGTGCATTGCAG...................................................................................................................................................................................22129.0029254
....................................................TCAATTCCGTAGTGCATTGCA....................................................................................................................................................................................21111.0011110
.....................................................CAATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................2214.00440
....................................................TCAATTCCGTAGTGCATTGCAGTT.................................................................................................................................................................................2413.00330
.....................................................CAATTCCGTAGTGCATTGCA....................................................................................................................................................................................2011.00110
........................................................TTCCGTAGTGCATTGCAGT..................................................................................................................................................................................1911.00101
....................................................TCAATTCCGTAGTGCATTGC.....................................................................................................................................................................................2011.00110
.......................................................ATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................2011.00110
......................................................AATTCCGTAGTGCATTGCA....................................................................................................................................................................................1911.00110
.....................................................CAATTCCGTAGTGCATTGCAG...................................................................................................................................................................................2111.00110
....................................................TCAATTCCGTAGTGCATTGCAGG..................................................................................................................................................................................2311.00101
droAna3
-------------------------------------TTGGTTTCGAGACTTTCAATTCCGTAGTGCATTGCAGTGTTTT----TAAACTACAACTGCATGCTCTGCGGACTTGGCAGATTTGAA-GACCAGGAGCA--ACT---TT---------T----AAGAAC----AAT-----A---TT---------T---AACA---------AAAAAGTG----------------ATTA---AT---------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
....................................................TCAATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................2318398.0083983272971544348332492
....................................................TCAATTCCGTAGTGCATTGCAG...................................................................................................................................................................................2213855.0038552091322626143862
....................................................TCAATTCCGTAGTGCATTGCA....................................................................................................................................................................................2112983.0029834300405332502
....................................................TCAATTCCGTAGTGCATTGC.....................................................................................................................................................................................2012422.00242220111097661237
....................................................TCAATTCCGTAGTGCATTG......................................................................................................................................................................................191428.0042890022420175
...............................................................................................TGCATGCTCTGCGGACTTGGCA........................................................................................................................................221390.0039032231817246
....................................................TCAATTCCGTAGTGCATTGCAGTT.................................................................................................................................................................................241299.0029925001579108
....................................................TCAATTCCGTAGTGCATTGCAGC..................................................................................................................................................................................231134.00134210002714
....................................................TCAATTCCGTAGTGCATTGCAGA..................................................................................................................................................................................23182.008230136438
....................................................TCAATTCCGTAGTGCATTGCAGTA.................................................................................................................................................................................24169.006930019047
...............................................................................................TGCATGCTCTGCGGACTTGGC.........................................................................................................................................21166.00666905145
....................................................TCAATTCCGTAGTGCATTGCAT...................................................................................................................................................................................22147.004710128413
.....................................................CAATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................22144.00442720933
....................................................TCAATTCCGTAGTGCATTGCT....................................................................................................................................................................................21143.004300023119
......................................................AATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................21143.00430104011
....................................................TCAATTCCGTAGTGCATTGCAGTG.................................................................................................................................................................................24134.003400012022
......................................................AATTCCGTAGTGCATTGCAG...................................................................................................................................................................................20126.00260002600
....................................................TCAATTCCGTAGTGCATTGCAA...................................................................................................................................................................................22122.002200012010
....................................................TCAATTCCGTAGTGCATTGA.....................................................................................................................................................................................20120.00200007013
.....................................................CAATTCCGTAGTGCATTGCAG...................................................................................................................................................................................21119.0019900505
...............................................................................................TGCATGCTCTGCGGACTTGG..........................................................................................................................................20117.0017700811
...............................................................................................TGCATGCTCTGCGGACTTG...........................................................................................................................................19115.00150002013
....................................................TCAATTCCGTAGTGCATTGCAGG..................................................................................................................................................................................23114.0014110318
....................................................TCAATTCCGTAGTGCATTGCG....................................................................................................................................................................................21113.0013000418
......................................................AATTCCGTAGTGCATTGC.....................................................................................................................................................................................18112.00120001200
....................................................TCAATTCCGTAGTGCATTGCAC...................................................................................................................................................................................22111.0011010712
......................................................AATTCCGTAGTGCATTGCA....................................................................................................................................................................................19111.0011000506
....................................................TCAATTCCGTAGTGCATTGT.....................................................................................................................................................................................2019.009000801
....................................................TCAATTCCGTAGTGCATTGCC....................................................................................................................................................................................2117.007000313
.....................................................CAATTCCGTAGTGCATTGCAGTT.................................................................................................................................................................................2316.006500001
...............................................................................................TGCATGCTCTGCGGACTTGGT.........................................................................................................................................2116.006000132
....................................................TCAATTCCGTAGTGCATTGCAGTC.................................................................................................................................................................................2416.006000600
....................................................TCAATTCCGTAGTGCATT.......................................................................................................................................................................................1816.006000600
....................................................TCAATTCCGTAGTGCATTGTT....................................................................................................................................................................................2115.005000104
.....................................................CAATTCCGTAGTGCATTGCA....................................................................................................................................................................................2015.005200102
....................................................TCAATTCCGTAGTGCATTGCATC..................................................................................................................................................................................2315.005000500
....................................................TCAATTCCGTAGTGCATTCA.....................................................................................................................................................................................2015.005000005
....................................................TCAATTCCGTAGTGCATTGCAGTTG................................................................................................................................................................................2515.005000401
.....................................................CAATTCCGTAGTGCATTGC.....................................................................................................................................................................................1915.005200003
....................................................TCAATTCCGTAGTGCATTT......................................................................................................................................................................................1915.005000302
....................................................TCAATTCCGTAGTGCATTGCAGTGT................................................................................................................................................................................2514.004000301
................................................................................................GCATGCTCTGCGGACTTGGCA........................................................................................................................................2114.004400000
.......................................................ATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................2014.004010300
....................................................TCAATTCCGTAGTGCATTGCTT...................................................................................................................................................................................2213.003000300
....................................................TCAATTCCGTAGTGCATTGCGT...................................................................................................................................................................................2213.003000300
....................................................TCAATTCCGTAGTGCATTGCAGTTA................................................................................................................................................................................2512.002000101
....................................................TCAATTCCGTAGTGCATTGCAGTTC................................................................................................................................................................................2512.002010001
......................................................AATTCCGTAGTGCATTGCAGTT.................................................................................................................................................................................2212.002000200
......................................................AATTCCGTAGTGCATTGCAGA..................................................................................................................................................................................2112.002000101
droBip1
---------------------------------------GGTTTCGAGACTTTCAATTCCGTAGTGCATTGCAGTGTTTT----TAAAGTTCTACTGCAAGCTCTGCGGACTTGGCAGATTTGAA-AACCAACAGCA--ACT---GT---------C----AATAAAAAGA------------TT------------------------------TAAC----------------AAAA---AT---------SizeHit CountTotal NormTotal
No Reads
droKik1
--------------------------------CTAAAATGGTATCGAAGCTTTCAATTCCGTAGTGCATTGCAGTGTTTC----AAAGTCCCAACTGCAAGCATTGTGGGATTGGCAGCATTGACCCACCATGAACA--TCGCCTGAAACAG---------AATCGCCTGTGAA--TAAAATAGT---------------------------------------------------TTT---GC---------SizeHit CountTotal NormTotal
No Reads
droFic1
---------------------------------------GGTATTGAAGCTTTCAATTCCGTAGTGCATTGCAGTGTGCT----TAATTATCAACCGCAAGCGCTGCGGATTTGGCAACTTTGAT-GGCCTCCATCA--TCT---GC---------T----AATTAAATGTAAA--ATTATGAA---------------------------TAATGATT----------------ATAA---AT---------SizeHit CountTotal NormTotal
No Reads
droEle1
---------------------------------------GGTTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTACT----TAATTAGCAACTGCAAGCGCAGCGGATTTGGCAACTTTGAC-GACCTTCATCA--TCT---GC---------A----TGTCGAATGTAAA--GTAATTATCAA---------------------------CTAAT----------------ATAA---AC----ATACASizeHit CountTotal NormTotal
No Reads
droRho1
AGGTCCTTTGCTCGGTATTTC-----------AA--AAAGGTATTGAAGCTTTCAATTCCGTAGTGCATTGCAGTGTGTT----TTACTATCTACTGCAAGCGCAGCGGATTTGGCAACTTTGAC-GACCTTTATCA--TCT---GT---------A----AGTCAAAAGTGAA--GTTAATAGTCACTAATAA-----------------T---GAC--------------------A---GC---------SizeHit CountTotal NormTotal
No Reads
droBia1
---------------------------------------GGTATTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTGCT----AAGCTATCTACTGCAAGCGCTGCGGATTTGGCAACTTTGAC-GACCTCCAACA--TCT---GC---------T----GGCGAAATGTGTAAAATTA----------------------------------AAACC----------------ATGA---AC---------SizeHit CountTotal NormTotal
No Reads
droTak1
---------------------------------------GGTATTGAAGCTTTCAATTCCGTAGTGCATTGCAGTGTGCT----TAAAAATCTACTGCAAGCGCTGCGGATTTGGCAACTTTGAG-GACCTTCATCA--TCT---GC---------T----AGTCAAATGTGAA--AT--------------------------------------AGCATAATAATATTTAGAAATAA---TA---------SizeHit CountTotal NormTotal
No Reads
droEug1
---------------------------------------GGTATTGAAGCTTTCAATTCCGTAGTGCATTGCAGTGTGTT----TAAATATCAACTGCAAGCGCTGCGGACTTGGCAACTTTGAT-GACCTTCATCA--TCT---AA---------T----AGTCAAATGTAAA--AAA----CTTAAAATTTATGACAGC-ATTAAGTATT---GATA----------------ATAAAAAGA---------SizeHit CountTotal NormTotal
No Reads
dm3
--------------------------------GT--ATTGGTTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTGTT----TCATTATTTACTGCAAGCGCTGCGGATTTGGCAACTTTGAC-GACCTTCATCA--TCT---GC---------T----AGAGAAATGTGAA--ATTTGTAGT------------------------------AACC----------------ATAAAAAAAAAAAATAT-SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
....................................................TCAATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................23177149.0077149000018160012821280417043340028301365264811311248450613310208301112961011101260006640000000000000000015151011254100170255560806057114012773912633172082086587162160148264671347921265121302205620733467434589008312716710100000000342031321261889412550000130090929824398024781257211441521230301594652240192014102440283341400017034910000970004001447147826507436138382844693544854002009027430213142135116203831200422235549212957311313510814721928676294016911675206853011501161022148265726553695229527032991230846163412566276396817182949148401979356201376668935189951428411768121620530212260
....................................................TCAATTCCGTAGTGCATTGCAG...................................................................................................................................................................................22139878.003987800002421010214004281521401233507061343713830433172110025313136311310001233000000000000000001298554714000024172542909255415966015612185282964124324012025291556622951261466457124028123371189857507000000003021200628312035001001100000176919300135546382992487791813426115771380200012584120920004001000000002200000000944740321671372924302451012030024430674696304140479014312801124461051032119134129310228104114541250171923737914798128712111251175173921477593003611220101717122501181600459671713400110
....................................................TCAATTCCGTAGTGCATTGCA....................................................................................................................................................................................21113716.00137160000721000004001610940002000062235661634560120100010000011211100031000000000000000000212113950130160252033108159221131118224012433825541216817899320087591913257162662050000000000101001131000200000000000006096730375106107700396932248024913400000396151204008054000000000000010043811167943375000210002203728410012112571099070031110010040802330100143121112200085237228178297016200200024117161220070016003100546062821300200
....................................................TCAATTCCGTAGTGCATTGC.....................................................................................................................................................................................2019131.00913100003810000000060021010150000851721970450001000300000001000005110000000000000000001221040000006010881122910701151189100317652400040218323013300156121671340001000000001003102000000000000000002465200159116722751951249384374500000234906120030300000000000000000521940100001100000001202628240004840713412002621000030100002130005142702002234222774567030032034000621203302100500041110001061031111000000
...............................................................................................TGCAAGCGCTGCGGATTTGGCA........................................................................................................................................2217903.007903000020000600107005000000000913111186501000002000000001001000040000000000000000000122040000004232133622100071110200002000402101902721201716840444393400000000000000001000000000000000020081144098231094791212313132441585700000341612320020210000000001000000353201101150931300006266015631301291090110500613500032305021230002718191200114750149531450131444324182671216318209224011147255222821256911235118435029581438111210
...............................................................................................TGCAAGCGCTGCGGATTTGGC.........................................................................................................................................2113013.003013000020000000008295000000000813171690200100101100000000000000000000000000000000021210000000001010012000000250000300030000419270506721082530000000000000001010000000000000002001813017229229191816165714950100052101000000100000000000000000310601000000301000008613400000126205040031000000021101060001211270001021221227124213016752201034764043011523831240144343011488217116109600510
....................................................TCAATTCCGTAGTGCATTG......................................................................................................................................................................................1912361.0023610000000000000020020001020000211837010000000010000000000000000000000000000000000110230000006100240282040001238100302000100004401202000263342600000000000000000001000000000000000049101027001442120312318170000025301100000200000000000000000000100100000000000000004290000413018000005000000020003000000300000000089438419000000000001629150000000001200000561120301000000
...............................................................................................TGCAAGCGCTGCGGATTTGG..........................................................................................................................................2012215.0022150000100000000031520000000006300000200000001000010000000000000000000000000000000010000000000400600000023000000001000001730103340513200000000000000001100000000000020000082501678174915913551194000002620101001000000000000000000022020000000000000000100025000015103020032300100100000200001100400000411272071382610286111010711120000331000075040001279381675100000
....................................................TCAATTCCGTAGTGCATTGCAGATC................................................................................................................................................................................2512111.00211100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001411700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................TCAATTCCGTAGTGCATTGCAGTT.................................................................................................................................................................................241852.00852000020000000001103000000000000000000000000101020000000000000000000000000000020111000000400160122020001491001704110000020603081100932315000000000000000121000001000000000000456205010227021021132600000132110000002000000000000000001100100111200000110020016000131901050027100000040101139000010002110022222221123023100000052230010031024501900126150100000200
......................................................AATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................211557.0055700000000000000000000000000000000000000000000001000000000000000000000000000000100000000000000002000000130000000000000061000203010000000000000000001110120000000000000002033016006805052100000001400000000000000000000000004000000010000000000000151003810004902000011700100001000300002000110000012837285302415700010118095000040002201700006510333000000
....................................................TCAATTCCGTAGTGCATTGCAGTA.................................................................................................................................................................................241480.00480000020000000001000000010000000000000000000100000000000000000000000000000000000000200000000031024200000140000000000000111603031318040129000000000000000000000000000000000000365002511815016016013000000173000000000000000000000000000100112001000000104000000710001702000001000000000000500011001200000111617161300000000001002000000000000500011600000000100
....................................................TCAATTCCGTAGTGCATTGCAGA..................................................................................................................................................................................231478.00478000010000101000000000000010000000000000000100000000000000000000000000000000000001000000000001600310000040000000000001021103070001311240000000000000000000010000000000000002131023005180130241322000002700100000000000000000000000000000000001000014300230281000240101001300000000010100000100001000002922242000100000004005000000000100300122310000000000
....................................................TCAATTCCGTAGTGCATTGCAGC..................................................................................................................................................................................231381.003810000900000001000000000000000000000000000001000101020000000000000000000000000000000000000000900610000013000010100001002002031108011200000000000000000000000000000000000028250130053000511700000039000000000000000000000000000000100010000000100001000500000302000031000001000004000020301010011211171626084200100018132000000010200200021600110000000
....................................................TCAATTCCGTAGTGCATT.......................................................................................................................................................................................181363.00363000000000000000000000000000219749120000000000000000000000000000000000000000000000170000000100600280010011270000302000000060000000011342000000000000000000000000000000000000114003249741933013000006000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000023640002000000000000000000000000000000010000000
....................................................TCAATTCCGTAGTGCATTGCAA...................................................................................................................................................................................221344.00344000014000001000000000000000000000000000000000000000001000000000000000000000000000180000000000291021001000670002000010000011100030007174000000000000000000000000000000000000132602010290411109000000101010000001000000000000000000200000000000000100000003000012010000000000010100000000100100000000318120000000000200000000000000000000500000000000
.....................................................CAATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................221261.00261000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001001200000100010000700402020502000000000000000000000000000000000000031360262014190170401700000019000000000000000000000000000000000000000000000001200000000101000010000000000001100000000000000104360500000000100000000000010110000500100000000
....................................................TCAATTCCGTAGTGCATTGCAGG..................................................................................................................................................................................231230.00230000010000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010100115000000000010100000000003032000000000000000000000000000000000000161101400140303642830000010000000000000000000000000000010000000000000000000000300002100000000000000000000000001000000000017161410010000000304300000000000040000800000000000
...............................................................................................TGCAAGCGCTGCGGATTTGGCAT.......................................................................................................................................231199.0019900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000020310000100302000000000000000000000000000000000000012013302412181200000010000001000000000000000000010000000000000000000000100000020100000400000000000100000000000000001196800000000011172000010000010300067830011000100
.....................................................CAATTCCGTAGTGCATTGCAG...................................................................................................................................................................................211198.0019800000000000000000000000000001000000000000000000000000000011000000000000000000000000000000000002000022490000001000010020000300020030000000000000000000000000000000000001427016001120141701300000015000000000000000000000000000000000000000000000000000000000000000002000000000000000000001000000000120010000000000000000000000000000100000000000
....................................................TCAATTCCGTAGTGCATTGCAT...................................................................................................................................................................................221198.00198000010000000004000000001000000000000000000100000000000000000000000000000000000002000000000130070100001300003000000010500100010242222100000000000000000000000000000000000069011001300040400000020000200000000000000000000000100000010000000000000004000011000010001000000000000000000000000000071050000000000100100000000000000000710000000000
......................................................AATTCCGTAGTGCATTGCAG...................................................................................................................................................................................201192.00192000000000000000000000010000010000000000010000000000000000000000000000000000000000000000000010000000001300000000000000800001010001100000000000000000000100000000000000078071026041501200010040000000001000000010000000000010103021210000000000011000000201000002000000010102000020001010000010471700400000003040000101000000000001501000000000
....................................................TCAATTCCGTAGTGCATTGCC....................................................................................................................................................................................211130.0013000000000000000000000000000000000000000000000000000100000000000000000000000000000100000000003005000000000000000000000261500000102716110000000000000000000000000000000000001130500000000000000000000000000000000000000000000000000000000000000000001800001200000000000000000000000000000000000000020000000000000000000000000000000000000000000
...............................................................................................TGCAAGCGCTGCGGATTTG...........................................................................................................................................191114.0011400000000000000000000000000003000000000100010000000000000000000000000000000000000000000000000001000000000000000000000000000000201000000000000000000000000000000000000021101101211333110000000000000100000000000000000000001000000000000000000002000004000000020000000000000000000010000000494500000000002002000000000000000003520000000000
....................................................TCAATTCCGTAGTGCATTGT.....................................................................................................................................................................................20177.007700001000010000000000000000000000000000000000000000000000000000000000000000000010110000000000120000000005000000000000001000000003055000000000000000000000000000000000000170100020303120000004000000000000000000000000000010000000000000000000000100000100000000000000000000000000000000000020210000000000000000000000000000000000000000000
....................................................TCAATTCCGTAGTGCATTGCT....................................................................................................................................................................................21173.00730000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000600100000020000000000000001000101050330000000000000000000000000000000000005407000100030300000000000000000000000000000000000000000000000000000000011000021300000000000000000000000000000000000000120000000000100000000000000000000100000000000
......................................................AATTCCGTAGTGCATTGCA....................................................................................................................................................................................19165.00650000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000010000001000000000000000000000020000000000000000002120000120504080000002000000000000000000000000000100100000000000000000000300001700000001000000000000000000000000001011130000000000000000000000000000000200000000000
...............................................................................................TGCAAGCGCTGCGGATTTGGCC........................................................................................................................................22165.006500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000127010000011320000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000010005000001000100000000000000000000000000000000000600100000101310100000000000000000300000000000
....................................................TCAATTCCGTAGTGCATTGCAC...................................................................................................................................................................................22161.00610000000000000000000000000100000000000000000000000000000000000000000000000000000060000000000130000100001000000000000004001000101002000000000000000000000000000000000000660400020000000000001000000000000000000000000000000000000000000000000000100000200010000000000000000000000000000000002020000000000001100000000000000000001000000000
....................................................TCAATTCCGTAGTGCATTGCAGTC.................................................................................................................................................................................24159.0059000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000030000000000000000000000001002100012000000000000000000000000000000000000240000100100120000002000000000000000000000000000000000000000000043000000100000000000013000000000000000000000020000022220010000000100100000000000000000900001000000
....................................................TCAATTCCGTAGTGCATTGCAGTG.................................................................................................................................................................................24157.0057000000000000000000000000000000000000000000000000000000003200000000000000000000000000000000000000000003000000000000000001000101000000000000000000000000000000000000000340300210302010000003000000000000000000000000000000000000000000000000000100000200000000000000000003000000000000000106320010000000000000000000000000000500000000000
...............................................................................................TGCAAGCGCTGCGGATTTGGCAA.......................................................................................................................................23156.00560000000000000000001000000000100000000000000000000000000021000000000000000000000000000000000100100000000000000000000000000000000110000000000000000000000000000000000002102000221150300000020000000000000000000000000000000000000000000000001000000000000000010000000000000000000000000000230100000000001020000000000000000001310001000000
...............................................................................................TGCAAGCGCTGCGGATTTGGCT........................................................................................................................................22155.00550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000010000000010010000000000000000000000000000000000002101000001100010000040000000000000000000000000000000000000000000000000002000002000000010000000000000000000000000000541300000000000012000000001100100001410000000000
.....................................................CAATTCCGTAGTGCATTGCA....................................................................................................................................................................................20152.00520000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000200000010000000000000001000125010020000000000000000000000000000000000008203000100801000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
....................................................TCAATTCCGTAGTGCATTGCAGTAA................................................................................................................................................................................25147.0047000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000020030000003000000000000003000000001041000000000000000000000000000000000000730200110202020000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000001110000000000000100000000000000000000000000000
....................................................TCAATTCCGTAGTGCATTGA.....................................................................................................................................................................................20147.00470000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000020000000010230000000000000000000000000000000000003301000100010300000010000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000000111000000000000000000000000000000001100000000000
....................................................TCAATTCCGTAGTGCATTGCATC..................................................................................................................................................................................23146.004600000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000010000000000000010101000000000000000000000000000000000000011000000000000000000100000000000000000000000000000000000000000002413000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.......................................................ATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................20144.0044000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000006000000101030000000000000000000000000000000000000450100040400000000000000000000000000000000000000100000000000000000000000000000101000000000000000002001000000000000000120000000000100000000000000000000400000000000
......................................................AATTCCGTAGTGCATTGC.....................................................................................................................................................................................18144.0044000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000001000000000001000000000000000000000000000000000000320000000102000000002000000000000000000000000000010000000000000000000000200000301000004000000000000000000000000000011560001000000200000000000000000000400000000000
...............................................................................................TGCAAGCGCTGCGGATTTGGT.........................................................................................................................................21141.00410000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000001000000000000000000000000000000000000000000000000100000000002010000000000000000000000000000000000000000000000000000000000000003000000010000000000010000000000000000011500000000000001000000000100000002000000000000
...............................................................................................TGCAAGCGCTGCGGATTTGGA.........................................................................................................................................21136.00360000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012010000000000000000000000000000000000000000000001101000000030010000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000032100000000002000000000000000000001600000000000
....................................................TCAATTCCGTAGTGCATTGCG....................................................................................................................................................................................21135.0035000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000010000000005000000000000001000000000000000000000000000000000000000000000000550100110002000000000000000000000000000000000000000000000000000000000000100001500000001000000000000000000000000001011000000000000000000000000000000000100000000000
....................................................TCAATTCCGTAGTGCATTGCAGTTC................................................................................................................................................................................25131.003100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001714000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................GCAAGCGCTGCGGATTTGGCA........................................................................................................................................21129.0029000000000000000000000000000000000000000000000000000000900000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000310110200102020000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000010100000000010000000100000000000
....................................................TCAATTCCGTAGTGCATTGCCT...................................................................................................................................................................................22129.00290000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000010000000012047000000000000000000000000000000000000210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
....................................................TCAATTCCGTAGTGCATTGCAGAT.................................................................................................................................................................................24129.00290000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000207000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
--------------------------------GT--ATTGGTTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTGTT----TAATTATTTACTGCAAGCGCTGCGGATTTGGCAACTTTGAC-GACCTTCATCA--TCT---GC---------T----AGAGAAATGTGAA--ATTTGTAGT------------------------------AACC----------------ATAAAAAGC---------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
....................................................TCAATTCCGTAGTGCATTG......................................................................................................................................................................................19112747.001274711977793511863700000000000
....................................................TCAATTCCGTAGTGCATTGCAG...................................................................................................................................................................................2216610.006610119423232114522800018215000
....................................................TCAATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................2314887.0048871748256231482778005161315802100
....................................................TCAATTCCGTAGTGCATTGC.....................................................................................................................................................................................2012883.002883212315311572400001001000
....................................................TCAATTCCGTAGTGCATT.......................................................................................................................................................................................1812028.0020281900043196600000000000
....................................................TCAATTCCGTAGTGCATTGCA....................................................................................................................................................................................2111838.00183824540436154400101300000
...............................................................................................TGCAAGCGCTGCGGATTTGGCA........................................................................................................................................221913.0091375424674011025313138000
...............................................................................................TGCAAGCGCTGCGGATTTGGC.........................................................................................................................................211209.0020917711510301300800000
....................................................TCAATTCCGTAGTGCATTGCAGC..................................................................................................................................................................................231187.001871782600000000100000
....................................................TCAATTCCGTAGTGCATTGCAGG..................................................................................................................................................................................231145.001451354600000000000000
....................................................TCAATTCCGTAGTGCATTGCAGTG.................................................................................................................................................................................24172.0072000017000000100000
...............................................................................................TGCAAGCGCTGCGGATTTGGCT........................................................................................................................................22147.0047470000000000000000
.....................................................CAATTCCGTAGTGCATTGCAG...................................................................................................................................................................................21145.0045000014400000000000
....................................................TCAATTCCGTAGTGCATTGT.....................................................................................................................................................................................20138.0038380000000000000000
....................................................TCAATTCCGTAGTGCATTGCAC...................................................................................................................................................................................22127.0027270000000000000000
...............................................................................................TGCAAGCGCTGCGGATTTG...........................................................................................................................................19124.0024700011600000000000
...............................................................................................TGCAAGCGCTGCGGATTTGG..........................................................................................................................................20121.002140040801011002000
....................................................TCAATTCCGTAGTGCATTGTT....................................................................................................................................................................................21121.0021210000000000000000
.....................................................CAATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................22120.0020000011900000000000
...............................................................................................TGCAAGCGCTGCGGATTTGGCG........................................................................................................................................22119.0019152200000000000000
....................................................TCAATTCCGTAGTGCATTGCT....................................................................................................................................................................................21117.0017160000000000001000
....................................................TCAATTCCGTAGTGCATTGCAGA..................................................................................................................................................................................23115.0015120000001100100000
...............................................................................................TGCAAGCGCTGCGGATTTGGCAA.......................................................................................................................................23114.0014110010002000000000
...............................................................................................TGCAAGCGCTGCGGATTTGGCAT.......................................................................................................................................23113.0013101000000000011000
....................................................TCAATTCCGTAGTGCATTGCAGTGT................................................................................................................................................................................25112.0012000001200000000000
.....................................................CAATTCCGTAGTGCATTG......................................................................................................................................................................................18112.001260000600000000000
.......................................................ATTCCGTAGTGCATTGCAG...................................................................................................................................................................................19111.0011100000000001000000
....................................................TCAATTCCGTAGTGCATTGCAGTT.................................................................................................................................................................................24111.001180010000000200000
.....................................................CAATTCCGTAGTGCATTGCA....................................................................................................................................................................................2019.00910000800000000000
....................................................TCAATTCCGTAGTGCATTGCAA...................................................................................................................................................................................2219.00990000000000000000
...............................................................................................TGCAAGCGCTGCGGATTT............................................................................................................................................1818.00810000700000000000
......................................................AATTCCGTAGTGCATTGCAG...................................................................................................................................................................................2018.00840000300001000000
.....................................................CAATTCCGTAGTGCATTGC.....................................................................................................................................................................................1918.00810000700000000000
......................................................AATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................2118.00860000100000100000
....................................................TCAATTCCGTAGTGCATTGA.....................................................................................................................................................................................2017.00770000000000000000
....................................................TCAATTCCGTAGTGCATTGCG....................................................................................................................................................................................2117.00770000000000000000
...............................................................................................TGCAAGCGCTGCGGATTTGGCC........................................................................................................................................2216.00650000000000001000
......................................................AATTCCGTAGTGCATTGC.....................................................................................................................................................................................1814.00440000000000000000
....................................................TCAATTCCGTAGTGCATTGCAGAA.................................................................................................................................................................................2414.00431000000000000000
....................................................TCAATTCCGTAGTGCATTGCAT...................................................................................................................................................................................2214.00430000000000001000
....................................................TCAATTCCGTAGTGCATTGCAGTA.................................................................................................................................................................................2414.00410000000210000000
....................................................TCAATTCCGTAGTGCATTT......................................................................................................................................................................................1913.00330000000000000000
.......................................................ATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................2013.00330000000000000000
.........................................................TCCGTAGTGCATTGCAGT..................................................................................................................................................................................1813.00310000100001000000
...............................................................................................TGCAAGCGCTGCGGATTTGGCAAC......................................................................................................................................2413.00300000300000000000
...............................................................................................TGCAAGCGCTGCGGATTTGGG.........................................................................................................................................2113.00321000000000000000
....................................................TCAATTCCGTAGTGCATTGCTT...................................................................................................................................................................................2213.00330000000000000000
...............................................................................................TGCAAGCGCTGCGGATTTGGCATT......................................................................................................................................2413.00310000000000002000
................................................................................................GCAAGCGCTGCGGATTTGGCA........................................................................................................................................2112.00210010000000000000
....................................................TCAATTCCGTAGTGCATTGCAGTACT...............................................................................................................................................................................2612.00220000000000000000
........................................................TTCCGTAGTGCATTGCAGT..................................................................................................................................................................................1912.00210100000000000000
...................................................TTCAATTCCGTAGTGCATTGCAG...................................................................................................................................................................................2312.00200001100000000000
....................................................TCAATTCCGTAGTGCATTGCAGTGTG...............................................................................................................................................................................2612.00200000200000000000
...............................................................................................TGCAAGCGCTGCGGATTTGGCTT.......................................................................................................................................2312.00220000000000000000
....................................................TCAATTCCGTAGTGCATTGCTC...................................................................................................................................................................................2212.00220000000000000000
....................................................TCAATTCCGTAGTGCATTGCAGTAAA...............................................................................................................................................................................2612.00220000000000000000
....................................................TCAATTCCGTAGTGCATTGG.....................................................................................................................................................................................2012.00220000000000000000
....................................................TCAATTCCGTAGTGCATTA......................................................................................................................................................................................1912.00220000000000000000
...............................................................................................TGCAAGCGCTGCGGATTTGGAC........................................................................................................................................2212.00220000000000000000
....................................................TCAATTCCGTAGTGCATTGTC....................................................................................................................................................................................2112.00220000000000000000
......................................................AATTCCGTAGTGCATTGCAGC..................................................................................................................................................................................2112.00200200000000000000
....................................................TCAATTCCGTAGTGCATTGCAGAAC................................................................................................................................................................................2512.00220000000000000000
...............................................................................................TGCAAGCGCTGCGGATTTGGTTT.......................................................................................................................................2312.00200000000000002000
....................................................TCAATTCCGTAGTGCATTGCC....................................................................................................................................................................................2112.00220000000000000000
....................................................TCAATTCCGTAGTGCATTGCAGAAA................................................................................................................................................................................2512.00220000000000000000
....................................................TCAATTCCGTAGTGCATTGCAGTC.................................................................................................................................................................................2412.00220000000000000000
....................................................TCAATTCCGTAGTGCATTGCAGGAC................................................................................................................................................................................2511.00110000000000000000
....................................................TCAATTCCGTAGTGCATTGCAAC..................................................................................................................................................................................2311.00110000000000000000
...............................................................................................TGCAAGCGCTGCGGATTTGGCTG.......................................................................................................................................2311.00110000000000000000
.................................................................................................CAAGCGCTGCGGATTTGGCA........................................................................................................................................2011.00110000000000000000
...................................................................................................AGCGCTGCGGATTTGGCA........................................................................................................................................1811.00110000000000000000
....................................................TCAATTCCGTAGTGCATC.......................................................................................................................................................................................1811.00110000000000000000
..........................................................CCGTAGTGCATTGCAGT..................................................................................................................................................................................1711.00100000000001000000
......................................................AATTCCGTAGTGCATTGCA....................................................................................................................................................................................1911.00110000000000000000
...................................................TTCAATTCCGTAGTGCATTGCA....................................................................................................................................................................................2211.00100000100000000000
...............................................................................................TGCAAGCGCTGCGGATTTGGCTTT......................................................................................................................................2411.00100000000000001000
.....................................................CAATTCCGTAGTGCATTGCG....................................................................................................................................................................................2011.00110000000000000000
....................................................TCAATTCCGTAGTGCATTGCAGTAAC...............................................................................................................................................................................2611.00110000000000000000
..................................................................................................AAGCGCTGCGGATTTGGCA........................................................................................................................................1911.00100100000000000000
....................................................TCAATTCCGTAGTGCATTCAG....................................................................................................................................................................................2131.00321000000000000000
......................................................AATTCCGTAGTGCATTGCAGTT.................................................................................................................................................................................2211.00110000000000000000
.......................................................ATTCCGTAGTGCATTGC.....................................................................................................................................................................................1711.00100000000001000000
.......................................................ATTCCGTAGTGCATTGCA....................................................................................................................................................................................1811.00110000000000000000
.....................................................CAATTCCGTAGTGCATTGCAGTGT................................................................................................................................................................................2411.00100000100000000000
........................................................TTCCGTAGTGCATTGCAG...................................................................................................................................................................................1811.00100000100000000000
...................................................TTCAATTCCGTAGTGCAT........................................................................................................................................................................................1811.00100000100000000000
...............................................................................................TGCAAGCGCTGCGGATTTGGCAAT......................................................................................................................................2411.00100000000000001000
....................................................TCAATTCCGTAGTGCATTGCAGAT.................................................................................................................................................................................2411.00110000000000000000
droSec2
--------------------------------GT--ATTGGTTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTGTT----TAATTATTTACTGCAAGCGCTGCGGATTTGGCAACTTTGAC-GACCTTCATCA--TCT---GC---------T----AGAGAAATGTGAA--ATTTGTAGT------------------------------AACC----------------ATAA---AA---------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
....................................................TCAATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................2318388.00838823339614646295
....................................................TCAATTCCGTAGTGCATTGCAG...................................................................................................................................................................................2213072.0030721741181142666
....................................................TCAATTCCGTAGTGCATTGCA....................................................................................................................................................................................2112265.0022651914112221
....................................................TCAATTCCGTAGTGCATTGC.....................................................................................................................................................................................2011431.001431181821393
...............................................................................................TGCAAGCGCTGCGGATTTGGCA........................................................................................................................................2211046.0010462846213759
...............................................................................................TGCAAGCGCTGCGGATTTGGC.........................................................................................................................................211391.003911728355
....................................................TCAATTCCGTAGTGCATTG......................................................................................................................................................................................191259.00259300256
...............................................................................................TGCAAGCGCTGCGGATTTGG..........................................................................................................................................201243.00243865224
....................................................TCAATTCCGTAGTGCATTGCAGTT.................................................................................................................................................................................241104.0010415296
....................................................TCAATTCCGTAGTGCATTGCAGA..................................................................................................................................................................................23195.009503290
......................................................AATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................21172.007234956
....................................................TCAATTCCGTAGTGCATTGCAGTA.................................................................................................................................................................................24161.006102257
...............................................................................................TGCAAGCGCTGCGGATTTGGCAT.......................................................................................................................................23144.004410043
....................................................TCAATTCCGTAGTGCATTGCAT...................................................................................................................................................................................22130.003000030
....................................................TCAATTCCGTAGTGCATTGA.....................................................................................................................................................................................20126.002600026
......................................................AATTCCGTAGTGCATTGCAG...................................................................................................................................................................................20124.002401221
....................................................TCAATTCCGTAGTGCATTGCAA...................................................................................................................................................................................22119.001910018
.....................................................CAATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................22119.001910135
......................................................AATTCCGTAGTGCATTGCA....................................................................................................................................................................................19115.001500015
......................................................AATTCCGTAGTGCATTGC.....................................................................................................................................................................................18114.001400113
.....................................................CAATTCCGTAGTGCATTGCAG...................................................................................................................................................................................21111.00118003
....................................................TCAATTCCGTAGTGCATTGCAGC..................................................................................................................................................................................23110.00100028
...............................................................................................TGCAAGCGCTGCGGATTTGGCAA.......................................................................................................................................2318.0080017
....................................................TCAATTCCGTAGTGCATTGCAGTG.................................................................................................................................................................................2417.0070025
...............................................................................................TGCAAGCGCTGCGGATTTG...........................................................................................................................................1917.0070007
....................................................TCAATTCCGTAGTGCATT.......................................................................................................................................................................................1816.0060006
...............................................................................................TGCAAGCGCTGCGGATTTGGA.........................................................................................................................................2116.0060006
....................................................TCAATTCCGTAGTGCATTGCT....................................................................................................................................................................................2116.0060006
..............................................................................................CTGCAAGCGCTGCGGATTTGGC.........................................................................................................................................2216.0060114
...............................................................................................TGCAAGCGCTGCGGATTTGGT.........................................................................................................................................2115.0051004
....................................................TCAATTCCGTAGTGCATTGCG....................................................................................................................................................................................2115.0050104
.....................................................CAATTCCGTAGTGCATTGCA....................................................................................................................................................................................2014.0042002
...................................................................................................AGCGCTGCGGATTTGGCA........................................................................................................................................1814.0040013
....................................................TCAATTCCGTAGTGCATTGCAGG..................................................................................................................................................................................2313.0030003
....................................................TCAATTCCGTAGTGCATTGCATA..................................................................................................................................................................................2313.0030003
....................................................TCAATTCCGTAGTGCATTGCAGTAA................................................................................................................................................................................2513.0030003
....................................................TCAATTCCGTAGTGCATTGCAGTC.................................................................................................................................................................................2413.0030003
....................................................TCAATTCCGTAGTGCATTGT.....................................................................................................................................................................................2013.0030003
....................................................TCAATTCCGTAGTGCATTGCAC...................................................................................................................................................................................2213.0030003
...............................................................................................TGCAAGCGCTGCGGATTTGGCT........................................................................................................................................2213.0030003
....................................................TCAATTCCGTAGTGCATTGTT....................................................................................................................................................................................2113.0030003
................................................................................................GCAAGCGCTGCGGATTTGGCA........................................................................................................................................2113.0030003
.........................................................TCCGTAGTGCATTGCAGT..................................................................................................................................................................................1812.0022000
...............................................................................................TGCAAGCGCTGCGGATTTGGCAC.......................................................................................................................................2312.0020002
....................................................TCAATTCCGTAGTGCATTT......................................................................................................................................................................................1912.0020002
....................................................TCAATTCCGTAGTGCATTGCAGAA.................................................................................................................................................................................2412.0020101
....................................................TCAATTCCGTAGTGCATTGCC....................................................................................................................................................................................2112.0020002
....................................................TCAATTCCGTAGTGCATTGCAGTGA................................................................................................................................................................................2511.0010001
.................................................................................................CAAGCGCTGCGGATTTGGCAA.......................................................................................................................................2111.0010001
......................................................AATTCCGTAGTGCATTGCAGTT.................................................................................................................................................................................2211.0010001
...............................................................................................TGCAAGCGCTGCGGATTTGGCG........................................................................................................................................2211.0010100
.......................................................ATTCCGTAGTGCATTGCAG...................................................................................................................................................................................1911.0011000
...............................................................................................TGCAAGCGCTGCGGATTTGGTTT.......................................................................................................................................2311.0010001
....................................................TCAATTCCGTAGTGCATTGCAGCT.................................................................................................................................................................................2411.0010001
..............................................................................................CTGCAAGCGCTGCGGATTTGGCA........................................................................................................................................2311.0010001
...............................................................................................TGCAAGCGCTGCGGATTTGCA.........................................................................................................................................2111.0010001
...............................................................................................TGCAAGCGCTGCGGATTTGGTGT.......................................................................................................................................2311.0010001
droYak3
T-------------------------------AT--ATTGGCTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTGCT----TAATTATTTACTGCAAGCGCTGCGGATTTGGCAACTTTGAC-GACCTCCATCA--TCT---GC---------T----AGAGAAATGTGAA--ATTGGTAGT------------------------------AACC----------------ATAA---AA---------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
....................................................TCAATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................23112624.0012624496370628155383368373050000
....................................................TCAATTCCGTAGTGCATTGCAG...................................................................................................................................................................................2216424.00642431616016522953594380000
....................................................TCAATTCCGTAGTGCATTGC.....................................................................................................................................................................................2012030.00203026611206631075130000
....................................................TCAATTCCGTAGTGCATTG......................................................................................................................................................................................1911363.00136311093009615230000
....................................................TCAATTCCGTAGTGCATTGCA....................................................................................................................................................................................2111178.00117854400139268740000
...............................................................................................TGCAAGCGCTGCGGATTTGGCA........................................................................................................................................221776.0077639017541012317650010
....................................................TCAATTCCGTAGTGCATTGCAGC..................................................................................................................................................................................231276.00276610184052600000
...............................................................................................TGCAAGCGCTGCGGATTTGGC.........................................................................................................................................211245.002451093186416700100
......................................................AATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................211111.001115220356520000
....................................................TCAATTCCGTAGTGCATTGCAGTT.................................................................................................................................................................................241104.001045151325820000
....................................................TCAATTCCGTAGTGCATTGCAGA..................................................................................................................................................................................23189.00890210444110000
....................................................TCAATTCCGTAGTGCATTGCAGG..................................................................................................................................................................................23165.0065540104600000
......................................................AATTCCGTAGTGCATTGCAG...................................................................................................................................................................................20153.00530100193300000
....................................................TCAATTCCGTAGTGCATTGCAA...................................................................................................................................................................................22150.00501100192900000
....................................................TCAATTCCGTAGTGCATTGCAT...................................................................................................................................................................................22149.00490000113800000
...............................................................................................TGCAAGCGCTGCGGATTTGG..........................................................................................................................................20149.00490201192610000
.....................................................CAATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................22142.0042134202300000
....................................................TCAATTCCGTAGTGCATTGCAGTA.................................................................................................................................................................................24141.00410110192000000
...............................................................................................TGCAAGCGCTGCGGATTTGGCT........................................................................................................................................22132.0032260003300000
....................................................TCAATTCCGTAGTGCATTGCT....................................................................................................................................................................................21123.0023200051600000
....................................................TCAATTCCGTAGTGCATTGCAC...................................................................................................................................................................................22122.00221200001000000
.....................................................CAATTCCGTAGTGCATTGCAG...................................................................................................................................................................................21118.0018112002300000
...............................................................................................TGCAAGCGCTGCGGATTTGGCG........................................................................................................................................22116.0016140001100000
......................................................AATTCCGTAGTGCATTGCA....................................................................................................................................................................................19116.001610009600000
....................................................TCAATTCCGTAGTGCATTGCG....................................................................................................................................................................................21113.001321006400000
....................................................TCAATTCCGTAGTGCATTGCC....................................................................................................................................................................................21112.001210002900000
....................................................TCAATTCCGTAGTGCATTGCAGTG.................................................................................................................................................................................24110.001001002700000
...............................................................................................TGCAAGCGCTGCGGATTTGGCAT.......................................................................................................................................2319.00910006200000
......................................................AATTCCGTAGTGCATTGC.....................................................................................................................................................................................1819.00900004500000
....................................................TCAATTCCGTAGTGCATT.......................................................................................................................................................................................1818.00850001200000
....................................................TCAATTCCGTAGTGCATTGCAGTC.................................................................................................................................................................................2418.00800004400000
...............................................................................................TGCAAGCGCTGCGGATTTGGCC........................................................................................................................................2218.00840001300000
....................................................TCAATTCCGTAGTGCATTGT.....................................................................................................................................................................................2018.00810003400000
....................................................TCAATTCCGTAGTGCATTGA.....................................................................................................................................................................................2017.00700005200000
.........................................................TCCGTAGTGCATTGCAGT..................................................................................................................................................................................1817.00722100200000
...............................................................................................TGCAAGCGCTGCGGATTTGGCAA.......................................................................................................................................2316.00640000200000
....................................................TCAATTCCGTAGTGCATTT......................................................................................................................................................................................1915.00500003200000
.......................................................ATTCCGTAGTGCATTGCAG...................................................................................................................................................................................1914.00420002000000
...............................................................................................TGCAAGCGCTGCGGATTTGGCAG.......................................................................................................................................2314.00440000000000
.......................................................ATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................2014.00411000110000
......................................................AATTCCGTAGTGCATTGCAGTT.................................................................................................................................................................................2214.00400000400000
.....................................................CAATTCCGTAGTGCATTGC.....................................................................................................................................................................................1913.00311000100000
T-------------------------------AT--ATTGGCTTTGAAGTTT.........................................................................................................................................................................................................1913.00300101100000
....................................................TCAATTCCGTAGTGCATTGCTT...................................................................................................................................................................................2213.00310000200000
....................................................TCAATTCCGTAGTGCATTGCAGAA.................................................................................................................................................................................2413.00310000200000
droEre2
--------------------------------GT--ATTGGTTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTCTT----TACTTATTTACTGCAAGCGCTGCGGATTTGGCAACTTTGAC-GACCTTAATCA--TCT---GGAGC------T----AGAGACGTGTGAT--ATTTGTAGA------------------------------TGGC-----------------------AT---------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
....................................................TCAATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................23115420.001542053536734721668121004028
....................................................TCAATTCCGTAGTGCATTGCAG...................................................................................................................................................................................2217485.0074853511217661516351780
....................................................TCAATTCCGTAGTGCATTGCA....................................................................................................................................................................................2115796.00579642021243555030
....................................................TCAATTCCGTAGTGCATTGC.....................................................................................................................................................................................2012320.00232013427913019930
...............................................................................................TGCAAGCGCTGCGGATTTGGCA........................................................................................................................................2211665.001665167244135313320
...............................................................................................TGCAAGCGCTGCGGATTTGGC.........................................................................................................................................211424.004242259383500
....................................................TCAATTCCGTAGTGCATTG......................................................................................................................................................................................191297.002973019052700
....................................................TCAATTCCGTAGTGCATTGCAGA..................................................................................................................................................................................231236.002366130021970
....................................................TCAATTCCGTAGTGCATTGCAGC..................................................................................................................................................................................231229.002292936001280
...............................................................................................TGCAAGCGCTGCGGATTTGG..........................................................................................................................................201217.002177033081690
....................................................TCAATTCCGTAGTGCATTGCAGTA.................................................................................................................................................................................241152.001523113031320
......................................................AATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................211136.00136023212990
....................................................TCAATTCCGTAGTGCATTGCAGTT.................................................................................................................................................................................241105.00105331604790
.....................................................CAATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................22177.0077443202260
......................................................AATTCCGTAGTGCATTGCAG...................................................................................................................................................................................20167.0067001402510
....................................................TCAATTCCGTAGTGCATTGCAGG..................................................................................................................................................................................23155.005521000520
....................................................TCAATTCCGTAGTGCATTGCAA...................................................................................................................................................................................22152.005220900410
......................................................AATTCCGTAGTGCATTGCA....................................................................................................................................................................................19152.005200100510
....................................................TCAATTCCGTAGTGCATTGCAGTG.................................................................................................................................................................................24151.005110911390
....................................................TCAATTCCGTAGTGCATTGCAT...................................................................................................................................................................................22147.0047101201330
.....................................................CAATTCCGTAGTGCATTGCAG...................................................................................................................................................................................21129.0029160200110
....................................................TCAATTCCGTAGTGCATTGA.....................................................................................................................................................................................20117.001700100160
.....................................................CAATTCCGTAGTGCATTGCA....................................................................................................................................................................................20117.001750000120
......................................................AATTCCGTAGTGCATTGC.....................................................................................................................................................................................18115.001500200130
....................................................TCAATTCCGTAGTGCATT.......................................................................................................................................................................................18113.001310000120
....................................................TCAATTCCGTAGTGCATTGCAC...................................................................................................................................................................................22113.00130070060
...............................................................................................TGCAAGCGCTGCGGATTTGGCAT.......................................................................................................................................23113.001300000130
....................................................TCAATTCCGTAGTGCATTGCAGTAA................................................................................................................................................................................25111.00111010090
...............................................................................................TGCAAGCGCTGCGGATTTGGCAA.......................................................................................................................................23111.00110020180
....................................................TCAATTCCGTAGTGCATTGCT....................................................................................................................................................................................2119.0090030060
.....................................................CAATTCCGTAGTGCATTGC.....................................................................................................................................................................................1919.0093010140
..............................................................................................CTGCAAGCGCTGCGGATTTGGC.........................................................................................................................................2219.0090100260
....................................................TCAATTCCGTAGTGCATTGCAGTC.................................................................................................................................................................................2419.0090000090
....................................................TCAATTCCGTAGTGCATTGCC....................................................................................................................................................................................2118.0080020060
....................................................TCAATTCCGTAGTGCATTGCAAA..................................................................................................................................................................................2317.0071000060
...............................................................................................TGCAAGCGCTGCGGATTTGGT.........................................................................................................................................2117.0070000070
........................................................TTCCGTAGTGCATTGCAGT..................................................................................................................................................................................1917.0071110040
.......................................................ATTCCGTAGTGCATTGCAG...................................................................................................................................................................................1917.0070020050
...................................................................................................AGCGCTGCGGATTTGGCA........................................................................................................................................1816.0060000060
................................................................................................GCAAGCGCTGCGGATTTGGCA........................................................................................................................................2116.0063100020
.......................................................ATTCCGTAGTGCATTGCAGT..................................................................................................................................................................................2015.0050100130
..................................................................................................AAGCGCTGCGGATTTGGCA........................................................................................................................................1915.0050000050
...............................................................................................TGCAAGCGCTGCGGATTTGGA.........................................................................................................................................2115.0050010040
...............................................................................................TGCAAGCGCTGCGGATTTG...........................................................................................................................................1915.0050030020
....................................................TCAATTCCGTAGTGCATTGCG....................................................................................................................................................................................2115.0050000050
...............................................................................................TGCAAGCGCTGCGGATTTGGCT........................................................................................................................................2214.0040010030
....................................................TCAATTCCGTAGTGCATTGCAGAA.................................................................................................................................................................................2414.0040010030
......................................................AATTCCGTAGTGCATTGCAGTA.................................................................................................................................................................................2214.0040000040
....................................................TCAATTCCGTAGTGCATTGCAGCA.................................................................................................................................................................................2414.0040000040
....................................................TCAATTCCGTAGTGCATTCA.....................................................................................................................................................................................2014.0040000040
...............................................................................................TGCAAGCGCTGCGGATTTGGCC........................................................................................................................................2213.0030030000
....................................................TCAATTCCGTAGTGCATTGCAGTAC................................................................................................................................................................................2513.0030100020
....................................................TCAATTCCGTAGTGCATTGCAGTGA................................................................................................................................................................................2513.0030010020
...............................................................................................TGCAAGCGCTGCGGATTTGGCG........................................................................................................................................2213.0030000030
....................................................TCAATTCCGTAGTGCATTGCAGAAA................................................................................................................................................................................2512.0020010100
....................................................TCAATTCCGTAGTGCATTGCAGTGT................................................................................................................................................................................2512.0020000020
....................................................TCAATTCCGTAGTGCATTGTC....................................................................................................................................................................................2112.0020000110
......................................................AATTCCGTAGTGCATTGCAGTG.................................................................................................................................................................................2212.0020000020

Generated: 10/20/2015 at 06:54 PM