dpe_119

TACAGTTACTATCGATAGTGCCATCGATGGTTTGACACCTGTAGTTGGCGATAGTGGCGCCACTTGATAGTATCACCACTAACCATACAGTATATATACAGTATATACTATCAAGTGGCGCCACTATCGCCACTACTGCCAGAGTGGCGCTGGGCTTGGGAAAATATCGAAATGATTTT *********************************...(((((((((((((((((((((((((((((((((((...........((((.(((....))).))))))))))))))))))))))))))))))))..)))).))).**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	V057 head	V050 head	V111 male body	V042 embryo	M021 embryo
...........................................................................................................CTATCAAGTGGCGCCACTATC...................................................	21	0	2	11.00	22	6	5	3	2	6	0
..................................................ATAGTGGCGCCACTTGATAGTA...........................................................................................................	22	0	2	9.00	18	7	3	5	1	2	0
..................................................ATAGTGGCGCCACTTGATAGT............................................................................................................	21	0	2	9.00	18	8	5	1	4	0	0
...........................................................................................................CTATCAAGTGGCGCCACTAT....................................................	20	0	2	6.00	12	5	4	2	1	0	0
..................................................ATAGTGGCGCCACTTGATAG.............................................................................................................	20	0	2	4.50	9	0	3	2	4	0	0
...........................................................................................................CTATCAAGTGGCGCCACTATCG..................................................	22	0	2	4.00	8	6	2	0	0	0	0
...........................................................................................................CTATCAAGTGGCGCCACTA.....................................................	19	0	2	2.00	4	4	0	0	0	0	0
...........................................................................................................CTGTCAAGTGGCGCCACTATC...................................................	21	1	2	1.50	3	1	1	1	0	0	0
...........................................................................................................CTATCAAGTGGCGCCACTATCGT.................................................	23	1	2	1.50	3	2	1	0	0	0	0
..................................................ATAGTGGCGCCACTTGATAGTAA..........................................................................................................	23	1	2	1.00	2	1	0	0	1	0	0
..................................................ATAGTGGCGCCGCTTGATAGTA...........................................................................................................	22	1	2	0.50	1	1	0	0	0	0	0
..................................................ATAGTGGCCCCACTTGATAGT............................................................................................................	21	1	2	0.50	1	1	0	0	0	0	0
...................................................TAGTGGCGCCACTTGATAGT............................................................................................................	20	0	2	0.50	1	0	0	1	0	0	0
............................................................................................................TGTCAAGTGGCGCCACTATCG..................................................	21	1	2	0.50	1	1	0	0	0	0	0
................................................CGATAGTGGCGCCACTTGA................................................................................................................	19	0	2	0.50	1	0	1	0	0	0	0
...........................................................................................................CTATCAAGTGGCGCCACTATCT..................................................	22	1	2	0.50	1	1	0	0	0	0	0
..................................................ATAGTGGCGCCACTTGTTAGT............................................................................................................	21	1	2	0.50	1	0	1	0	0	0	0
..................................................ATAGTGGCGCCGCTTGATA..............................................................................................................	19	1	2	0.50	1	1	0	0	0	0	0
..................................................ATAGTGGCGCCCCTTGATAGTA...........................................................................................................	22	1	2	0.50	1	0	0	1	0	0	0
..................................................ATAGCGGCGCCACTTGATAGTA...........................................................................................................	22	1	2	0.50	1	0	0	1	0	0	0
...........................................................................................................CTAGCAAGAGGCGCCACTATCC..................................................	22	3	2	0.50	1	0	1	0	0	0	0
...........................................................................................................CTGTCAGGTGGCGCCACTATCG..................................................	22	2	2	0.50	1	1	0	0	0	0	0
...........................................................................................................CTATCAAGTGGCGCCACTATA...................................................	21	1	2	0.50	1	1	0	0	0	0	0
...........................................................................................................CTATCAGGTGGCGCCACTATC...................................................	21	1	2	0.50	1	1	0	0	0	0	0
..................................................ATAGTCGCGCCACTTGATAGT............................................................................................................	21	1	2	0.50	1	0	1	0	0	0	0
..................................................ATGGTGGCGCCACTTGATAGTA...........................................................................................................	22	1	2	0.50	1	1	0	0	0	0	0
..................................................ATAGTGGCGCCACTTGCTGGT............................................................................................................	21	2	3	0.33	1	0	0	1	0	0	0
...........................................................................................................CTATCAAGTGGCGCCACTTTC...................................................	21	1	3	0.33	1	0	0	1	0	0	0
...........................................................................................................CTATCAAGGGGCGCCACTAT....................................................	20	1	3	0.33	1	0	1	0	0	0	0
............................................TTGGCGATAGGGGCGACA.....................................................................................................................	18	2	5	0.20	1	0	1	0	0	0	0
..................................................ATAGTGGCGCCCCTTGCTAC.............................................................................................................	20	3	6	0.17	1	0	0	1	0	0	0
............................................TTGGGGATAGTGGCGCAA.....................................................................................................................	18	2	7	0.14	1	0	1	0	0	0	0
..........................................ATTTGGCGATAGTGGCGCTT.....................................................................................................................	20	3	7	0.14	1	0	1	0	0	0	0
.............GATAGTGCCATCGATGGTTTGA................................................................................................................................................	22	0	10	0.10	1	0	0	0	0	1	0
...........................................ATTGGGGATAGTGGCGCCAG....................................................................................................................	20	3	13	0.08	1	0	1	0	0	0	0
............................................TTGGCGATAGGGGCGTAA.....................................................................................................................	18	3	20	0.05	1	0	1	0	0	0	0
..............................................................................................................................................................GGAAAACATCGACATGATTG.	20	3	20	0.05	1	0	0	0	0	0	1

TACAGTTACTATCGATAGTGCCATCGATGGTTTGACACCTGTAGTTGGCGATAGTGGCGCCACTTGATAGTATCACCACTAACCATACAGTATATATACAGTATATACTATCAAGTGGCGCCACTATCGCCACTACTGCCAGAGTGGCGCTGGGCTTGGGAAAATATCGAAATGATTTT

***********************************...(((((((((((((((((((((((((((((((((((...........((((.(((....))).))))))))))))))))))))))))))))))))..)))).))).************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M042

female body

V057

head

V050

head

V111

male body

V042

embryo

M021

embryo

...........................................................................................................CTATCAAGTGGCGCCACTATC...................................................

11.00

..................................................ATAGTGGCGCCACTTGATAGTA...........................................................................................................

9.00

..................................................ATAGTGGCGCCACTTGATAGT............................................................................................................

9.00

...........................................................................................................CTATCAAGTGGCGCCACTAT....................................................

6.00

..................................................ATAGTGGCGCCACTTGATAG.............................................................................................................

4.50

...........................................................................................................CTATCAAGTGGCGCCACTATCG..................................................

4.00

...........................................................................................................CTATCAAGTGGCGCCACTA.....................................................

2.00

...........................................................................................................CTGTCAAGTGGCGCCACTATC...................................................

1.50

...........................................................................................................CTATCAAGTGGCGCCACTATCGT.................................................

1.50

..................................................ATAGTGGCGCCACTTGATAGTAA..........................................................................................................

1.00

..................................................ATAGTGGCGCCGCTTGATAGTA...........................................................................................................

0.50

..................................................ATAGTGGCCCCACTTGATAGT............................................................................................................

0.50

...................................................TAGTGGCGCCACTTGATAGT............................................................................................................

0.50

............................................................................................................TGTCAAGTGGCGCCACTATCG..................................................

0.50

................................................CGATAGTGGCGCCACTTGA................................................................................................................

0.50

...........................................................................................................CTATCAAGTGGCGCCACTATCT..................................................

0.50

..................................................ATAGTGGCGCCACTTGTTAGT............................................................................................................

0.50

..................................................ATAGTGGCGCCGCTTGATA..............................................................................................................

0.50

..................................................ATAGTGGCGCCCCTTGATAGTA...........................................................................................................

0.50

..................................................ATAGCGGCGCCACTTGATAGTA...........................................................................................................

0.50

...........................................................................................................CTAGCAAGAGGCGCCACTATCC..................................................

0.50

...........................................................................................................CTGTCAGGTGGCGCCACTATCG..................................................

0.50

...........................................................................................................CTATCAAGTGGCGCCACTATA...................................................

0.50

...........................................................................................................CTATCAGGTGGCGCCACTATC...................................................

0.50

..................................................ATAGTCGCGCCACTTGATAGT............................................................................................................

0.50

..................................................ATGGTGGCGCCACTTGATAGTA...........................................................................................................

0.50

..................................................ATAGTGGCGCCACTTGCTGGT............................................................................................................

0.33

...........................................................................................................CTATCAAGTGGCGCCACTTTC...................................................

0.33

...........................................................................................................CTATCAAGGGGCGCCACTAT....................................................

0.33

............................................TTGGCGATAGGGGCGACA.....................................................................................................................

0.20

..................................................ATAGTGGCGCCCCTTGCTAC.............................................................................................................

0.17

............................................TTGGGGATAGTGGCGCAA.....................................................................................................................

0.14

..........................................ATTTGGCGATAGTGGCGCTT.....................................................................................................................

0.14

.............GATAGTGCCATCGATGGTTTGA................................................................................................................................................

0.10

...........................................ATTGGGGATAGTGGCGCCAG....................................................................................................................

0.08

............................................TTGGCGATAGGGGCGTAA.....................................................................................................................

0.05

..............................................................................................................................................................GGAAAACATCGACATGATTG.

0.05

ATGTCAATGATAGCTATCACGGTAGCTACCAAACTGTGGACATCAACCGCTATCACCGCGGTGAACTATCATAGTGGTGATTGGTATGTCATATATATGTCATATATGATAGTTCACCGCGGTGATAGCGGTGATGACGGTCTCACCGCGACCCGAACCCTTTTATAGCTTTACTAAAA **********************************...(((((((((((((((((((((((((((((((((((...........((((.(((....))).))))))))))))))))))))))))))))))))..)))).))).*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	V057 head	V050 head	V111 male body	V042 embryo	M021 embryo
.................................................CTATCACCGCGGTGAACTATC.............................................................................................................	21	0	2	11.00	22	6	5	3	2	6	0
..............................................................................................................................AGCGGTGATGATCGTCTTA..................................	19	3	9	11.00	99	86	11	0	2	0	0
..........................................................................................................TGATAGTTCACCGCGGTGATA....................................................	21	0	2	9.00	18	8	5	1	4	0	0
.........................................................................................................ATGATAGTTCACCGCGGTGATA....................................................	22	0	2	9.00	18	7	3	5	1	2	0
..................................................TATCACCGCGGTGAACTATC.............................................................................................................	20	0	2	6.00	12	5	4	2	1	0	0
...........................................................................................................GATAGTTCACCGCGGTGATA....................................................	20	0	2	4.50	9	0	3	2	4	0	0
................................................GCTATCACCGCGGTGAACTATC.............................................................................................................	22	0	2	4.00	8	6	2	0	0	0	0
...................................................ATCACCGCGGTGAACTATC.............................................................................................................	19	0	2	2.00	4	4	0	0	0	0	0
..................................................................................................GTCATATATGATAGTTCACCGC...........................................................	22	0	1	2.00	2	0	0	0	0	0	2
...............................................................................................................................GCGGTGATGATCGTCTTA..................................	18	3	20	1.75	35	25	10	0	0	0	0
.................................................CTATCACCGCGGTGAACTGTC.............................................................................................................	21	1	2	1.50	3	1	1	1	0	0	0
...............................................TGCTATCACCGCGGTGAACTATC.............................................................................................................	23	1	2	1.50	3	2	1	0	0	0	0
........................................CATCAACCACTATCACCTCGAT.....................................................................................................................	22	3	1	1.00	1	0	1	0	0	0	0
........................................................................................................AATGATAGTTCACCGCGGTGATA....................................................	23	1	2	1.00	2	1	0	0	1	0	0
..............................................................................................................................AGCGGTGATGATCGTCTT...................................	18	3	20	0.90	18	15	3	0	0	0	0
..........................................................................TGGTGATTGGTATGTCATAT.....................................................................................	20	0	20	0.55	11	0	11	0	0	0	0
..............................................................................................................AGTTCACCGCGGTGATAGC..................................................	19	0	2	0.50	1	0	1	0	0	0	0
.................................................ATATCACCGCGGTGAACTATC.............................................................................................................	21	1	2	0.50	1	1	0	0	0	0	0
..........................................................................................................TGATAGTTCACCGCGGTGAT.....................................................	20	0	2	0.50	1	0	0	1	0	0	0
................................................TCTATCACCGCGGTGAACTATC.............................................................................................................	22	1	2	0.50	1	1	0	0	0	0	0
................................................GCTATCACCGCGGTGGACTGTC.............................................................................................................	22	2	2	0.50	1	1	0	0	0	0	0
.................................................CTATCACCGCGGTGGACTATC.............................................................................................................	21	1	2	0.50	1	1	0	0	0	0	0
.........................................................................................................ATGATAGTTCCCCGCGGTGATA....................................................	22	1	2	0.50	1	0	0	1	0	0	0
................................................GCTATCACCGCGGTGAACTGT..............................................................................................................	21	1	2	0.50	1	1	0	0	0	0	0
..........................................................................................................TGATAGTTCACCGCGCTGATA....................................................	21	1	2	0.50	1	0	1	0	0	0	0
..........................................................................................................TGATTGTTCACCGCGGTGATA....................................................	21	1	2	0.50	1	0	1	0	0	0	0
................................................CCTATCACCGCGGAGAACGATC.............................................................................................................	22	3	2	0.50	1	0	1	0	0	0	0
.........................................................................................................ATGATAGTTCACCGCGGTGGTA....................................................	22	1	2	0.50	1	1	0	0	0	0	0
.........................................................................................................ATGATAGTTCGCCGCGGTGATA....................................................	22	1	2	0.50	1	1	0	0	0	0	0
.........................................................................................................ATGATAGTTCACCGCGGCGATA....................................................	22	1	2	0.50	1	0	0	1	0	0	0
............................................................................................................ATAGTTCGCCGCGGTGATA....................................................	19	1	2	0.50	1	1	0	0	0	0	0
..........................................................................................................TGATAGTTCACCCCGGTGATA....................................................	21	1	2	0.50	1	1	0	0	0	0	0
..................................................TATCACCGCGGGGAACTATC.............................................................................................................	20	1	3	0.33	1	0	1	0	0	0	0
..........................................................................................................TGGTCGTTCACCGCGGTGATA....................................................	21	2	3	0.33	1	0	0	1	0	0	0
.................................................CTTTCACCGCGGTGAACTATC.............................................................................................................	21	1	3	0.33	1	0	0	1	0	0	0
............................................................................................................................AAAGCGGTGATGAGGGTC.....................................	18	2	4	0.25	1	0	1	0	0	0	0
...........................................................................................................CATCGTTCCCCGCGGTGATA....................................................	20	3	6	0.17	1	0	0	1	0	0	0
..............................................................................................................................AGCGGTGATGACCGTCTTAG.................................	20	3	8	0.13	1	1	0	0	0	0	0
....................................................................................................................CCGCGGCGATAGCGGTAA.............................................	18	2	9	0.11	1	0	1	0	0	0	0
..........................................................................TGGTGATTGGTATGTCATATA....................................................................................	21	0	20	0.10	2	1	0	0	1	0	0
..................................................................................................................GACCGCGGTGATAGGGGTTA.............................................	20	3	13	0.08	1	0	1	0	0	0	0
................................................................................................................................................ACCGCGACCCGCACCCAT.................	18	2	17	0.06	1	0	1	0	0	0	0
.............................................................................TGATTGGTATGTCATATAT...................................................................................	19	0	20	0.05	1	1	0	0	0	0	0
................................................................................TTGGTATGTTATATAAATGG...............................................................................	20	3	20	0.05	1	1	0	0	0	0	0

ATGTCAATGATAGCTATCACGGTAGCTACCAAACTGTGGACATCAACCGCTATCACCGCGGTGAACTATCATAGTGGTGATTGGTATGTCATATATATGTCATATATGATAGTTCACCGCGGTGATAGCGGTGATGACGGTCTCACCGCGACCCGAACCCTTTTATAGCTTTACTAAAA

************************************...(((((((((((((((((((((((((((((((((((...........((((.(((....))).))))))))))))))))))))))))))))))))..)))).))).***********************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M042

female body

V057

head

V050

head

V111

male body

V042

embryo

M021

embryo

.................................................CTATCACCGCGGTGAACTATC.............................................................................................................

11.00

..............................................................................................................................AGCGGTGATGATCGTCTTA..................................

11.00

..........................................................................................................TGATAGTTCACCGCGGTGATA....................................................

9.00

.........................................................................................................ATGATAGTTCACCGCGGTGATA....................................................

9.00

..................................................TATCACCGCGGTGAACTATC.............................................................................................................

6.00

...........................................................................................................GATAGTTCACCGCGGTGATA....................................................

4.50

................................................GCTATCACCGCGGTGAACTATC.............................................................................................................

4.00

...................................................ATCACCGCGGTGAACTATC.............................................................................................................

2.00

..................................................................................................GTCATATATGATAGTTCACCGC...........................................................

2.00

...............................................................................................................................GCGGTGATGATCGTCTTA..................................

1.75

.................................................CTATCACCGCGGTGAACTGTC.............................................................................................................

1.50

...............................................TGCTATCACCGCGGTGAACTATC.............................................................................................................

1.50

........................................CATCAACCACTATCACCTCGAT.....................................................................................................................

1.00

........................................................................................................AATGATAGTTCACCGCGGTGATA....................................................

1.00

..............................................................................................................................AGCGGTGATGATCGTCTT...................................

0.90

..........................................................................TGGTGATTGGTATGTCATAT.....................................................................................

0.55

..............................................................................................................AGTTCACCGCGGTGATAGC..................................................

0.50

.................................................ATATCACCGCGGTGAACTATC.............................................................................................................

0.50

..........................................................................................................TGATAGTTCACCGCGGTGAT.....................................................

0.50

................................................TCTATCACCGCGGTGAACTATC.............................................................................................................

0.50

................................................GCTATCACCGCGGTGGACTGTC.............................................................................................................

0.50

.................................................CTATCACCGCGGTGGACTATC.............................................................................................................

0.50

.........................................................................................................ATGATAGTTCCCCGCGGTGATA....................................................

0.50

................................................GCTATCACCGCGGTGAACTGT..............................................................................................................

0.50

..........................................................................................................TGATAGTTCACCGCGCTGATA....................................................

0.50

..........................................................................................................TGATTGTTCACCGCGGTGATA....................................................

0.50

................................................CCTATCACCGCGGAGAACGATC.............................................................................................................

0.50

.........................................................................................................ATGATAGTTCACCGCGGTGGTA....................................................

0.50

.........................................................................................................ATGATAGTTCGCCGCGGTGATA....................................................

0.50

.........................................................................................................ATGATAGTTCACCGCGGCGATA....................................................

0.50

............................................................................................................ATAGTTCGCCGCGGTGATA....................................................

0.50

..........................................................................................................TGATAGTTCACCCCGGTGATA....................................................

0.50

..................................................TATCACCGCGGGGAACTATC.............................................................................................................

0.33

..........................................................................................................TGGTCGTTCACCGCGGTGATA....................................................

0.33

.................................................CTTTCACCGCGGTGAACTATC.............................................................................................................

0.33

............................................................................................................................AAAGCGGTGATGAGGGTC.....................................

0.25

...........................................................................................................CATCGTTCCCCGCGGTGATA....................................................

0.17

..............................................................................................................................AGCGGTGATGACCGTCTTAG.................................

0.13

....................................................................................................................CCGCGGCGATAGCGGTAA.............................................

0.11

..........................................................................TGGTGATTGGTATGTCATATA....................................................................................

0.10

..................................................................................................................GACCGCGGTGATAGGGGTTA.............................................

0.08

................................................................................................................................................ACCGCGACCCGCACCCAT.................

0.06

.............................................................................TGATTGGTATGTCATATAT...................................................................................

0.05

................................................................................TTGGTATGTTATATAAATGG...............................................................................

0.05

Species	Coordinate	ID	Alignment
droPer2	scaffold_5:3576253-3576431 -	dpe_119	TACAGTTACTATCGATAGTGCCATCGATGGTTTGACACCTGTAGTTGGCGATAGTGGCGCCACTTGATAGTATCACCACTAACCATACAGTATATATACAGTATATACTATCAAGTGGCGCCACTATCGCCACTACTGCCAGAGTGGCGCTGGGCTTGGGAAAATATCGAAATGATTTT
dp5	4_group1:1629860-1629975 +		TACAGTTACTATCGATAGTGCCATCGATGGTTTGACACCTGTAGTTGGCGATAGTGGCGCCACTTGATAGTATCACCACTAACCATACAGTATATATACAGTATATACTATCAAGT---------------------------------------------------------------
droTak1	scf7180000415858:122780-122788 -		TCTAGTAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4929:15469620-15469627 +		AACTGGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Species

Coordinate

Alignment

droPer2

scaffold_5:3576253-3576431 -

dpe_119

TACAGTTACTATCGATAGTGCCATCGATGGTTTGACACCTGTAGTTGGCGATAGTGGCGCCACTTGATAGTATCACCACTAACCATACAGTATATATACAGTATATACTATCAAGTGGCGCCACTATCGCCACTACTGCCAGAGTGGCGCTGGGCTTGGGAAAATATCGAAATGATTTT

dp5

4_group1:1629860-1629975 +

TACAGTTACTATCGATAGTGCCATCGATGGTTTGACACCTGTAGTTGGCGATAGTGGCGCCACTTGATAGTATCACCACTAACCATACAGTATATATACAGTATATACTATCAAGT---------------------------------------------------------------

droTak1

scf7180000415858:122780-122788 -

TCTAGTAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------

droEre2

scaffold_4929:15469620-15469627 +

AACTGGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

TACAGTTACTATCGATAGTGCCATCGATGGTTTGACACCTGTAGTTGGCGATAGTGGCGCCACTTGATAGTATCACCACTAACCATACAGTATATATACAGTATATACTATCAAGTGGCGCCACTATCGCCACTACTGCCAGAGTGGCGCTGGGCTTGGGAAAATATCGAAATGATTTT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...........................................................................................................CTATCAAGTGGCGCCACTATC...................................................	21	2	11.00	22	0	6	6	3	5	2
..................................................ATAGTGGCGCCACTTGATAGTA...........................................................................................................	22	2	9.00	18	0	7	2	5	3	1
..................................................ATAGTGGCGCCACTTGATAGT............................................................................................................	21	2	9.00	18	0	8	0	1	5	4
...........................................................................................................CTATCAAGTGGCGCCACTAT....................................................	20	2	6.00	12	0	5	0	2	4	1
..................................................ATAGTGGCGCCACTTGATAG.............................................................................................................	20	2	4.50	9	0	0	0	2	3	4
...........................................................................................................CTATCAAGTGGCGCCACTATCG..................................................	22	2	4.00	8	0	6	0	0	2	0
...........................................................................................................CTATCAAGTGGCGCCACTA.....................................................	19	2	2.00	4	0	4	0	0	0	0
...........................................................................................................CTATCAAGTGGCGCCACTATCGT.................................................	23	2	1.50	3	0	2	0	0	1	0
..................................................ATAGTGGCGCCACTTGATAGTAA..........................................................................................................	23	2	1.00	2	0	1	0	0	0	1
...................................................TAGTGGCGCCACTTGATAGT............................................................................................................	20	2	0.50	1	0	0	0	1	0	0
................................................CGATAGTGGCGCCACTTGA................................................................................................................	19	2	0.50	1	0	0	0	0	1	0
...........................................................................................................CTATCAAGTGGCGCCACTATCT..................................................	22	2	0.50	1	0	1	0	0	0	0
...........................................................................................................CTATCAAGTGGCGCCACTATA...................................................	21	2	0.50	1	0	1	0	0	0	0
.............GATAGTGCCATCGATGGTTTGA................................................................................................................................................	22	10	0.10	1	0	0	1	0	0	0

dp5

TACAGTTACTATCGATAGTGCCATCGATGGTTTGACACCTGTAGTTGGCGATAGTGGCGCCACTTGATAGTATCACCACTAACCATACAGTATATATACAGTATATACTATCAAGT---------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..................................................ATAGTGGCGCCACTTGATAGTA...........................................................................................................	22	2	12.00	24	0	15	0	1	3	1	4	0	0	0
..................................................ATAGTGGCGCCACTTGATAGT............................................................................................................	21	2	5.50	11	0	7	0	1	0	0	3	0	0	0
...................................................TAGTGGCGCCACTTGATAGTA...........................................................................................................	21	2	2.00	4	0	4	0	0	0	0	0	0	0	0
..................................................ATAGTGGCGCCACTTGATAG.............................................................................................................	20	2	1.00	2	0	0	1	0	0	1	0	0	0	0
....................................................AGTGGCGCCACTTGATAGT............................................................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..................................................ATAGTGGCGCCACTTGATAGTAA..........................................................................................................	23	2	0.50	1	0	0	0	0	0	0	1	0	0	0
..................................................ATAGTGGCGCCACTTGATAGTG...........................................................................................................	22	2	0.50	1	0	0	0	0	0	0	1	0	0	0

droTak1

TCTAGTAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEre2

AACTGGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dpe_119

scaffold_5:3576303-3576381 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-60.2	-59.8	-59.5