dpe_118

Name	Class	Family	Strand
Gypsy19-LTR_Dpse	LTR	Gypsy	-

ACCAACCTGTCCCTCTTGTCGATACAGCAAAAGTGGCTCTTGAACCCAACTCCGATCTCTAGTTCTCTTCCGATCTAGTTTTCGCATAGTTCTAGGTCGCAGAACTAGAACTATCGGACGATAATTCATGTCGATACTTATTCGGATACTTTCGATATTCCGTACAACATTCAA *********************************..((...........((((((.(((((((((....((((((((.............)))))))).)))))))))...))))))..............)).....*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V111 male body	M042 female body	M021 embryo	V042 embryo
..................................................TCCGATCTCTAGTTCTCTTCCGATC...................................................................................................	25	0	3	9.00	27	0	12	14	1
..................................................TCCGATCTCTAGTTCTCTTCCGAT....................................................................................................	24	0	3	4.00	12	0	1	11	0
.............TCTTGTCGATACAGCAAAAGTGG..........................................................................................................................................	23	0	3	3.00	9	9	0	0	0
...................................................CCGATCTCTAGTTCTCTTCCGATC...................................................................................................	24	0	3	2.33	7	0	5	2	0
.............TCTTGTCGATACAGCAAAAGTGGC.........................................................................................................................................	24	0	3	2.00	6	5	1	0	0
..................................................TCCGATATCTAGTTCTCTTCCGATC...................................................................................................	25	1	4	1.75	7	0	3	4	0
....................................................CGATCTCTAGTTCTCTTCCGATCTAG................................................................................................	26	0	3	1.33	4	0	2	2	0
.............TCTTGTCGATACAGCAAAAGTGGCT........................................................................................................................................	25	0	3	1.33	4	4	0	0	0
....................................................CGATCTCTAGTTCTCTTCCGATC...................................................................................................	23	0	3	1.33	4	0	2	2	0
...................CGATACAGCAAAAGTGGCTCTTGAACC................................................................................................................................	27	0	3	1.00	3	2	1	0	0
..................TCGATACAGCAAAAGTGGCTCTTGAAC.................................................................................................................................	27	0	3	1.00	3	3	0	0	0
.............TCTTGTCGATACAGCAAAAGTGGCTCT......................................................................................................................................	27	0	3	1.00	3	1	2	0	0
.......................................................TCTCTAGTTCTCTTCCGATCTAGTT..............................................................................................	25	0	3	1.00	3	0	3	0	0
....................GATACAGCAAAAGTGGCTCTTGAACC................................................................................................................................	26	0	3	1.00	3	3	0	0	0
................TGTCGATACAGCAAAAGTGG..........................................................................................................................................	20	0	3	0.67	2	2	0	0	0
................TGTCGATACAGCAAAAGTGGCTCTT.....................................................................................................................................	25	0	3	0.67	2	1	1	0	0
................TGTCGATACAGCAAAAGTGGCTCTTGA...................................................................................................................................	27	0	3	0.67	2	2	0	0	0
...............TTGTCGATACAGCAAAAGTGGC.........................................................................................................................................	22	0	3	0.67	2	2	0	0	0
......................TACAGCAAAAGTGGCTCTTGAACC................................................................................................................................	24	0	3	0.67	2	2	0	0	0
................TGTCGATACAGCAAAAGTGGCTCTTGAAC.................................................................................................................................	29	0	3	0.67	2	2	0	0	0
.......................................................TCTCTAGTTCTCTTCCGATC...................................................................................................	20	0	3	0.67	2	0	2	0	0
.............TCTAGTCGATACAGCAAAAGTGG..........................................................................................................................................	23	1	3	0.67	2	2	0	0	0
..................................................TCCGATCTCTAGTTCTCTTCCGA.....................................................................................................	23	0	3	0.67	2	0	0	2	0
..................................................TCCGATCTCTAGTTCTCTTCCGATCT..................................................................................................	26	0	3	0.33	1	0	1	0	0
...............TTGTCGATACAGCAAAAGTGGCT........................................................................................................................................	23	0	3	0.33	1	1	0	0	0
................TGTCGATACAGCAAAAGTGGCTCTTGAA..................................................................................................................................	28	0	3	0.33	1	1	0	0	0
................TGTCGATACAGCAAAAGTGGCTC.......................................................................................................................................	23	0	3	0.33	1	1	0	0	0
...............TTGTCGATACCGCAAAAGTGG..........................................................................................................................................	21	1	3	0.33	1	1	0	0	0
.............TCTTGTCGATACAGCAAAAGTGTCTCTT.....................................................................................................................................	28	1	3	0.33	1	1	0	0	0
........................................................CTCTAGTTCTCTTCCGATCTAGT...............................................................................................	23	0	3	0.33	1	0	1	0	0
..................................................TCCGATCTCTAGTTCTCTTCC.......................................................................................................	21	0	3	0.33	1	0	0	0	1
......................................................ATCTCTAGTTCTCTTCCGATC...................................................................................................	21	0	3	0.33	1	0	1	0	0
.......................................................TCTCTAGTTCTCTTCCGATCTAG................................................................................................	23	0	3	0.33	1	0	1	0	0
..................................................TCCGATCTCTATTTCTCTTCCGATC...................................................................................................	25	1	3	0.33	1	0	1	0	0
..................................................TCCGATCTCTAGTCCTCTTCCGAT....................................................................................................	24	1	3	0.33	1	0	0	1	0
...............TTGTCGATACAGCAAAAGTGG..........................................................................................................................................	21	0	3	0.33	1	1	0	0	0
................TGTCGATACAGCAAAAGTGGCTCT......................................................................................................................................	24	0	3	0.33	1	1	0	0	0
...................CGATACAGCAAAAGTGGCTCTTC....................................................................................................................................	23	1	3	0.33	1	1	0	0	0
..................................................TCCGATCTCTAGTTCTCTTCCGAC....................................................................................................	24	1	3	0.33	1	0	0	1	0
................TGTCGATACAGCAAAAGTGGCTCTTG....................................................................................................................................	26	0	3	0.33	1	1	0	0	0
................TGTCGATAGAGCAAAAGTGGCTCTTG....................................................................................................................................	26	1	3	0.33	1	0	1	0	0
................TGTCGATACAGCAAAAGTGGCT........................................................................................................................................	22	0	3	0.33	1	1	0	0	0
................TGTCGATAGAGCAAAAGTGGCTCTTGAA..................................................................................................................................	28	1	3	0.33	1	0	1	0	0
...............TTGTCGATACAGCAAAAGTGGCTCTTGA...................................................................................................................................	28	0	3	0.33	1	1	0	0	0
.................GTCGATACAGCAAAAGTGGCTCTT.....................................................................................................................................	24	0	3	0.33	1	1	0	0	0
.............TCTTGTCGATACAGCAAAAGTG...........................................................................................................................................	22	0	7	0.29	2	2	0	0	0
.........................................................TCTAGTTCTCTTCCGATCTAGTT..............................................................................................	23	0	4	0.25	1	0	1	0	0
.......................................................TATCTAGTTCTCTTCCGATCTAGTT..............................................................................................	25	1	4	0.25	1	0	1	0	0
...................................................CCGATATCTAGTTCTCTTCCGATC...................................................................................................	24	1	4	0.25	1	0	1	0	0
......................TACAGCAAAAGTGGCCATTGGAC.................................................................................................................................	23	3	5	0.20	1	0	0	0	1
...............TTGTCGATACAGCAAAAGTG...........................................................................................................................................	20	0	7	0.14	1	1	0	0	0
................TGTCGATACAGCAAAAGTG...........................................................................................................................................	19	0	7	0.14	1	0	1	0	0

TGGTTGGACAGGGAGAACAGCTATGTCGTTTTCACCGAGAACTTGGGTTGAGGCTAGAGATCAAGAGAAGGCTAGATCAAAAGCGTATCAAGATCCAGCGTCTTGATCTTGATAGCCTGCTATTAAGTACAGCTATGAATAAGCCTATGAAAGCTATAAGGCATGTTGTAAGTT *********************************..((...........((((((.(((((((((....((((((((.............)))))))).)))))))))...))))))..............)).....*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	M021 embryo	V111 male body
............................................................TCAAGAGAAGGCTAGATC................................................................................................	18	0	5	0.60	3	1	2	0
.....................................................CTATAGATCAAGAGAAGGCTAGATC................................................................................................	25	1	4	0.25	1	1	0	0
.............AGAACAGCTATGTCGTTTT..............................................................................................................................................	19	0	8	0.13	1	0	0	1

Species	Coordinate	ID	Alignment
droPer2	scaffold_16:1315573-1315746 +	dpe_118	ACCAACCTGTCCCTCTTGTCGATACAGCAAAAGTGGCTCTTGAACCCAACTCCGATCTCTAGTTCTCTTCCGATCTAGTTTTCGCATAGTTCTAGGTCGCAGAACTAGAACTATCGGACGATAATTCATGTCGATACTTATTCGGATACTTTCGATATTCCGTACAACATTCAA
dp5	4_group4:5634543-5634716 -		ACCAACCTGTCCCTCTTGTCGATACAGCAAAAGTGGCTCTTGAACCCAACTCCGATCTCTAGTTCTCTTCCGATCTAGTTTTCGCATAGTTCTAGGTCGCAGAACTAGAACTATCGGACGATAATTCATGTCGATACTTATTAGGATACTTTCGATATTCCGTACAACATTCAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

ACCAACCTGTCCCTCTTGTCGATACAGCAAAAGTGGCTCTTGAACCCAACTCCGATCTCTAGTTCTCTTCCGATCTAGTTTTCGCATAGTTCTAGGTCGCAGAACTAGAACTATCGGACGATAATTCATGTCGATACTTATTCGGATACTTTCGATATTCCGTACAACATTCAA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................................................TCCGATCTCTAGTTCTCTTCCGATC...................................................................................................	25	3	9.00	27	14	12	1	0	0	0
..................................................TCCGATCTCTAGTTCTCTTCCGAT....................................................................................................	24	3	4.00	12	11	1	0	0	0	0
.............TCTTGTCGATACAGCAAAAGTGG..........................................................................................................................................	23	3	3.00	9	0	0	0	0	0	9
...................................................CCGATCTCTAGTTCTCTTCCGATC...................................................................................................	24	3	2.33	7	2	5	0	0	0	0
.............TCTTGTCGATACAGCAAAAGTGGC.........................................................................................................................................	24	3	2.00	6	0	1	0	0	0	5
....................................................CGATCTCTAGTTCTCTTCCGATCTAG................................................................................................	26	3	1.33	4	2	2	0	0	0	0
.............TCTTGTCGATACAGCAAAAGTGGCT........................................................................................................................................	25	3	1.33	4	0	0	0	0	0	4
....................................................CGATCTCTAGTTCTCTTCCGATC...................................................................................................	23	3	1.33	4	2	2	0	0	0	0
...................CGATACAGCAAAAGTGGCTCTTGAACC................................................................................................................................	27	3	1.00	3	0	1	0	0	0	2
..................TCGATACAGCAAAAGTGGCTCTTGAAC.................................................................................................................................	27	3	1.00	3	0	0	0	0	0	3
.............TCTTGTCGATACAGCAAAAGTGGCTCT......................................................................................................................................	27	3	1.00	3	0	2	0	0	0	1
.......................................................TCTCTAGTTCTCTTCCGATCTAGTT..............................................................................................	25	3	1.00	3	0	3	0	0	0	0
....................GATACAGCAAAAGTGGCTCTTGAACC................................................................................................................................	26	3	1.00	3	0	0	0	0	0	3
................TGTCGATACAGCAAAAGTGG..........................................................................................................................................	20	3	0.67	2	0	0	0	0	0	2
................TGTCGATACAGCAAAAGTGGCTCTT.....................................................................................................................................	25	3	0.67	2	0	1	0	0	0	1
................TGTCGATACAGCAAAAGTGGCTCTTGA...................................................................................................................................	27	3	0.67	2	0	0	0	0	0	2
...............TTGTCGATACAGCAAAAGTGGC.........................................................................................................................................	22	3	0.67	2	0	0	0	0	0	2
......................TACAGCAAAAGTGGCTCTTGAACC................................................................................................................................	24	3	0.67	2	0	0	0	0	0	2
................TGTCGATACAGCAAAAGTGGCTCTTGAAC.................................................................................................................................	29	3	0.67	2	0	0	0	0	0	2
.......................................................TCTCTAGTTCTCTTCCGATC...................................................................................................	20	3	0.67	2	0	2	0	0	0	0
..................................................TCCGATCTCTAGTTCTCTTCCGA.....................................................................................................	23	3	0.67	2	2	0	0	0	0	0
..................................................TCCGATCTCTAGTTCTCTTCCGATCT..................................................................................................	26	3	0.33	1	0	1	0	0	0	0
...............TTGTCGATACAGCAAAAGTGGCT........................................................................................................................................	23	3	0.33	1	0	0	0	0	0	1
................TGTCGATACAGCAAAAGTGGCTCTTGAA..................................................................................................................................	28	3	0.33	1	0	0	0	0	0	1
................TGTCGATACAGCAAAAGTGGCTC.......................................................................................................................................	23	3	0.33	1	0	0	0	0	0	1
........................................................CTCTAGTTCTCTTCCGATCTAGT...............................................................................................	23	3	0.33	1	0	1	0	0	0	0
..................................................TCCGATCTCTAGTTCTCTTCC.......................................................................................................	21	3	0.33	1	0	0	1	0	0	0
......................................................ATCTCTAGTTCTCTTCCGATC...................................................................................................	21	3	0.33	1	0	1	0	0	0	0
.......................................................TCTCTAGTTCTCTTCCGATCTAG................................................................................................	23	3	0.33	1	0	1	0	0	0	0
...............TTGTCGATACAGCAAAAGTGG..........................................................................................................................................	21	3	0.33	1	0	0	0	0	0	1
................TGTCGATACAGCAAAAGTGGCTCT......................................................................................................................................	24	3	0.33	1	0	0	0	0	0	1
...................CGATACAGCAAAAGTGGCTCTTC....................................................................................................................................	23	3	0.33	1	0	0	0	0	0	1
..................................................TCCGATCTCTAGTTCTCTTCCGAC....................................................................................................	24	3	0.33	1	1	0	0	0	0	0
................TGTCGATACAGCAAAAGTGGCTCTTG....................................................................................................................................	26	3	0.33	1	0	0	0	0	0	1
................TGTCGATACAGCAAAAGTGGCT........................................................................................................................................	22	3	0.33	1	0	0	0	0	0	1
...............TTGTCGATACAGCAAAAGTGGCTCTTGA...................................................................................................................................	28	3	0.33	1	0	0	0	0	0	1
.................GTCGATACAGCAAAAGTGGCTCTT.....................................................................................................................................	24	3	0.33	1	0	0	0	0	0	1
.............TCTTGTCGATACAGCAAAAGTG...........................................................................................................................................	22	7	0.29	2	0	0	0	0	0	2
.........................................................TCTAGTTCTCTTCCGATCTAGTT..............................................................................................	23	4	0.25	1	0	1	0	0	0	0
...............TTGTCGATACAGCAAAAGTG...........................................................................................................................................	20	7	0.14	1	0	0	0	0	0	1
................TGTCGATACAGCAAAAGTG...........................................................................................................................................	19	7	0.14	1	0	1	0	0	0	0

dp5

ACCAACCTGTCCCTCTTGTCGATACAGCAAAAGTGGCTCTTGAACCCAACTCCGATCTCTAGTTCTCTTCCGATCTAGTTTTCGCATAGTTCTAGGTCGCAGAACTAGAACTATCGGACGATAATTCATGTCGATACTTATTAGGATACTTTCGATATTCCGTACAACATTCAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................TACAGCAAAAGTGGCTCTTGAACC................................................................................................................................	24	2	43.00	86	1	2	0	0	0	0	0	0	83	0
.............TCTTGTCGATACAGCAAAAGTGGC.........................................................................................................................................	24	4	42.75	171	0	6	0	0	0	0	7	0	158	0
................TGTCGATACAGCAAAAGTGG..........................................................................................................................................	20	4	17.75	71	0	38	0	1	4	0	10	0	18	0
................TGTCGATACAGCAAAAGTGGC.........................................................................................................................................	21	4	17.00	68	0	13	1	1	0	0	0	2	51	0
......................TACAGCAAAAGTGGCTCTTGAACCC...............................................................................................................................	25	2	17.00	34	1	5	0	0	0	0	0	0	28	0
................TGTCGATACAGCAAAAGTGGCTCTTGA...................................................................................................................................	27	2	15.50	31	0	1	0	0	0	0	4	0	26	0
......................TACAGCAAAAGTGGCTCTTGAAC.................................................................................................................................	23	2	15.00	30	0	0	0	0	0	0	1	0	29	0
..................................................TCCGATCTCTAGTTCTCTTCCGATC...................................................................................................	25	1	14.00	14	0	12	0	0	0	0	0	2	0	0
.............TCTTGTCGATACAGCAAAAGTGG..........................................................................................................................................	23	4	13.50	54	0	1	0	0	0	0	3	0	50	0
................TGTCGATACAGCAAAAGTGGCTCTT.....................................................................................................................................	25	2	10.00	20	0	7	0	1	0	0	3	0	9	0
................TGTCGATACAGCAAAAGTGGCTCTTG....................................................................................................................................	26	2	9.00	18	0	6	0	0	0	0	3	0	9	0
.............TCTTGTCGATACAGCAAAAGTGGCTCT......................................................................................................................................	27	2	8.50	17	0	1	0	0	0	0	6	0	10	0
....................GATACAGCAAAAGTGGCTCTTGAACC................................................................................................................................	26	2	8.00	16	0	0	0	1	0	0	0	0	15	0
...............TTGTCGATACAGCAAAAGTGGC.........................................................................................................................................	22	4	8.00	32	0	2	0	0	0	0	2	0	28	0
..................TCGATACAGCAAAAGTGGCTCTTGAA..................................................................................................................................	26	2	7.50	15	0	1	0	0	0	0	0	0	14	0
......................TACAGCAAAAGTGGCTCTTGAACCCA..............................................................................................................................	26	2	6.00	12	0	5	0	0	0	0	1	0	6	0
................TGTCGATACAGCAAAAGTGGCC........................................................................................................................................	22	4	5.75	23	0	14	5	0	1	0	1	1	1	0
................TGTCGATACAGCAAAAGTGGCTCT......................................................................................................................................	24	2	5.50	11	0	6	0	0	0	0	2	0	3	0
................TGTCGATACAGCAAAAGTGGCTC.......................................................................................................................................	23	4	5.50	22	0	3	0	0	0	0	1	0	18	0
..................TCGATACAGCAAAAGTGGCTCTTGAAC.................................................................................................................................	27	2	5.50	11	0	0	0	0	0	0	0	0	11	0
.................................................................................................CGCAGAACTAGAACTATCGGACGA.....................................................	24	1	5.00	5	0	1	0	0	0	0	0	3	1	0
..................TCGATACAGCAAAAGTGGCTCTTGA...................................................................................................................................	25	2	5.00	10	0	0	0	0	0	0	0	0	10	0
..............CTTGTCGATACAGCAAAAGTGGC.........................................................................................................................................	23	4	4.75	19	0	0	0	0	0	0	0	0	19	0
...................CGATACAGCAAAAGTGGCTCTTGAACC................................................................................................................................	27	2	4.50	9	0	0	0	0	0	0	0	0	9	0
......................TACAGCAAAAGTGGCTCTTGAACCCC..............................................................................................................................	26	2	4.50	9	0	0	0	0	0	0	0	0	9	0
...............TTGTCGATACAGCAAAAGTGGCTCTT.....................................................................................................................................	26	2	4.00	8	0	1	0	0	0	0	1	0	6	0
...................................................CCGATCTCTAGTTCTCTTCCGATC...................................................................................................	24	1	4.00	4	0	4	0	0	0	0	0	0	0	0
................................................................................................TCGCAGAACTAGAACTATCGGACGAT....................................................	26	1	4.00	4	0	1	0	0	0	0	0	3	0	0
.............TCTTGTCGATACAGCAAAAGTGGCTC.......................................................................................................................................	26	4	4.00	16	0	0	0	0	0	0	3	0	13	0
...............TTGTCGATACAGCAAAAGTGG..........................................................................................................................................	21	4	3.75	15	0	1	0	0	0	0	5	0	9	0
....................GATACAGCAAAAGTGGCTCTTGAACCC...............................................................................................................................	27	2	3.50	7	0	3	0	1	0	0	0	0	3	0
.............TCTTGTCGATACAGCAAAAGTGGCT........................................................................................................................................	25	4	3.25	13	1	0	0	0	0	0	3	0	9	0
.......................................................TCTCTAGTTCTCTTCCGATC...................................................................................................	20	1	3.00	3	0	2	0	0	0	0	0	1	0	0
................................................................................................TCGCAGAACTAGAACTATCGGACG......................................................	24	1	3.00	3	0	1	0	0	0	0	0	2	0	0
.................GTCGATACAGCAAAAGTGGCTCTTGAA..................................................................................................................................	27	2	3.00	6	0	0	0	0	0	0	0	0	6	0
....................GATACAGCAAAAGTGGCTCTTGAAC.................................................................................................................................	25	2	3.00	6	0	0	0	0	0	0	0	0	6	0
...................CGATACAGCAAAAGTGGCTCTTGAAC.................................................................................................................................	26	2	3.00	6	0	0	0	0	0	0	0	0	6	0
..................................................TCCGATCTCTAGTTCTCTTCCGA.....................................................................................................	23	1	3.00	3	0	3	0	0	0	0	0	0	0	0
................TGTCGATACAGCAAAAGTGGCTCTTGAA..................................................................................................................................	28	2	2.50	5	0	0	0	0	0	0	3	0	2	0
.............TCTTGTCGATACAGCAAAAGTG...........................................................................................................................................	22	4	2.50	10	0	1	0	0	0	0	0	0	9	0
..............CTTGTCGATACAGCAAAAGTGG..........................................................................................................................................	22	4	2.50	10	0	1	0	0	0	0	3	0	6	0
................TGTCGATACAGCAAAAGTGGCT........................................................................................................................................	22	4	2.25	9	0	2	0	0	0	1	0	0	6	0
..................................................TCCGATCTCTAGTTCTCTTCC.......................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...................CGATACAGCAAAAGTGGCTCTTG....................................................................................................................................	23	2	2.00	4	0	0	0	0	0	0	0	0	4	0
........................CAGCAAAAGTGGCTCTTGAACC................................................................................................................................	22	2	2.00	4	0	0	0	0	0	0	0	0	4	0
..................TCGATACAGCAAAAGTGGCTCTTGAACC................................................................................................................................	28	2	2.00	4	0	0	0	0	0	0	0	0	4	0
..................................................TCCGATCTCTAGTTCTCTTCCG......................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
........................CAGCAAAAGTGGCTCTTGAAC.................................................................................................................................	21	2	2.00	4	0	0	0	0	0	0	1	0	3	0
...................CGATACAGCAAAAGTGGCTCTTGAA..................................................................................................................................	25	2	2.00	4	0	0	0	0	0	0	0	0	4	0
................................................................................................TCGCAGAACTAGAACTATCGGACGATA...................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	2	0
.....................ATACAGCAAAAGTGGCTCTTGAAC.................................................................................................................................	24	2	2.00	4	0	1	0	0	0	0	0	0	3	0
................TGTCGATACAGCAAAAGTG...........................................................................................................................................	19	4	1.75	7	0	2	0	0	0	0	1	0	4	0
................TGTCGATACAGCAAAAGTGGCTCTA.....................................................................................................................................	25	2	1.50	3	0	0	0	0	0	0	0	0	3	0
........................CAGCAAAAGTGGCTCTTGAACCCA..............................................................................................................................	24	2	1.50	3	0	0	0	0	0	0	0	0	3	0
........................CAGCAAAAGTGGCTCTTGAACCC...............................................................................................................................	23	2	1.50	3	0	0	0	1	0	0	0	0	2	0
..............CTTGTCGATACAGCAAAAGTGGCTCT......................................................................................................................................	26	2	1.50	3	0	1	0	0	0	0	0	0	2	0
..................................................TCCGATCTCTAGTTCTCTTCCGATCA..................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................TCTCTAGTTCTCTTCCGATA...................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............TCTTGTCGATACAGCAAAAGTGGCTCTT.....................................................................................................................................	28	2	1.00	2	0	0	0	0	0	0	0	0	2	0
.....................ATACAGCAAAAGTGGCTCTTGAACC................................................................................................................................	25	2	1.00	2	0	0	0	0	0	0	0	0	2	0
.............TCTTGTCGATACAGCAAAAGTGGCTCTAA....................................................................................................................................	29	2	1.00	2	0	0	0	0	0	0	0	0	2	0
..................................................TCCGATCTCTAGTTCTCTTCCGAT....................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................TCTCTAGTTCTCTTCCGATCTAGTT..............................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................TCTCTAGTTCTCTTCCGATCTAG................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................CGCAGAACTAGAACTATCGGACGATCC..................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0
...........................CAAAAGTGGCTCTTGAACCCAACTCCG........................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0
................................................................................................TCGCAGAACTAGAACTATCGGACGA.....................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................CGCAGAACTAGAACTATCGGACG......................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................AGCAAAAGTGGCTCTTGAACC................................................................................................................................	21	2	1.00	2	0	0	0	0	0	0	0	0	2	0
................TGTCGATACAGCAAAAGTGGCTCTTGAAC.................................................................................................................................	29	2	1.00	2	0	0	0	0	0	0	0	0	2	0
...............TTGTCGATACAGCAAAAGTGGCTCTTG....................................................................................................................................	27	2	1.00	2	0	1	0	0	0	0	0	0	1	0
.................................................CTCCGATCTCTAGTTCTCTTCCGA.....................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............TTGTCGATACAGCAAAAGTGGCTCT......................................................................................................................................	25	2	1.00	2	0	1	0	0	0	0	0	0	1	0
.................GTCGATACAGCAAAAGTGG..........................................................................................................................................	19	4	1.00	4	0	4	0	0	0	0	0	0	0	0
......................................................ATCTCTAGTTCTCTTCCGATCTA.................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................CTCCGATCTCTAGTTCTCTTCCGAA....................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................TCGCAGAACTAGAACTATCGGACGG.....................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............CTTGTCGATACAGCAAAAGTGGCTC.......................................................................................................................................	25	4	0.75	3	0	0	0	0	0	0	0	0	3	0
................TGTCGATACAGCAAAAGTGGCCA.......................................................................................................................................	23	7	0.57	4	0	3	1	0	0	0	0	0	0	0
....................GATACAGCAAAAGTGGCTCTTGA...................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	1	0
................TGTCGATACAGCAAAAGTGGCTCTC.....................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	1	0
.......................ACAGCAAAAGTGGCTCTTGAACCCA..............................................................................................................................	25	2	0.50	1	1	0	0	0	0	0	0	0	0	0
.......................ACAGCAAAAGTGGCTCTTGAACCC...............................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...............TTGTCGATACAGCAAAAGTGGCT........................................................................................................................................	23	4	0.50	2	0	0	0	0	0	0	0	0	2	0
..................TCGATACAGCAAAAGTGGCTCTT.....................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	1	0
.................GTCGATACAGCAAAAGTGGCTCTTC....................................................................................................................................	25	2	0.50	1	0	0	0	0	0	1	0	0	0	0
......................TACAGCAAAAGTGGCTCTTGAACCCAC.............................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	1	0
......................TACAGCAAAAGTGGCTCTTG....................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	1	0
.............TCTTGTCGATACAGCAAAAGTGGCTT.......................................................................................................................................	26	4	0.50	2	1	1	0	0	0	0	0	0	0	0
................TGTCGATACAGCAAAAGTGGCTCTTT....................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	1	0
.........................AGCAAAAGTGGCTCTTGAACCC...............................................................................................................................	22	2	0.50	1	0	0	0	1	0	0	0	0	0	0
......................TACAGCAAAAGTGGCTCTTGAA..................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	1	0
.......................ACAGCAAAAGTGGCTCTTGAAC.................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	1	0
...............TTGTCGATACAGCAAAAGTGGCTCTC.....................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	1	0
.........................AGCAAAAGTGGCTCTTGAAC.................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...............TTGTCGATACAGCAAAAGTGGCTCTTGA...................................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	0	0	1	0
..................TCGATACAGCAAAAGTGGCTCTTGAAA.................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	1	0
.......................ACAGCAAAAGTGGCTCTTGAACC................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................GATACAGCAAAAGTGGCTCT......................................................................................................................................	20	2	0.50	1	0	0	0	0	0	1	0	0	0	0
...............TTGTCGATACAGCAAAAGTG...........................................................................................................................................	20	4	0.50	2	0	0	0	0	0	0	1	0	1	0
......................TACAGCAAAAGTGGCTCTTGAACAA...............................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	1	0
...........................CAAAAGTGGCTCTTGAACCC...............................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	1	0
.................GTCGATACAGCAAAAGTGGCTCT......................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...................CGATACAGCAAAAGTGGCTCTTGA...................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	1	0
.............TCTTGTCGATACAGCAAAAGTGGCC........................................................................................................................................	25	4	0.50	2	0	0	2	0	0	0	0	0	0	0
.................GTCGATACAGCAAAAGTGGCTCTT.....................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	1	0	0	0
................TGTCGATACAGCAAAAGTGGAC........................................................................................................................................	22	4	0.50	2	0	1	1	0	0	0	0	0	0	0
......................TACAGCAAAAGTGGCTCTTGAACTAC..............................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	1	0
.................GTCGATACAGCAAAAGTGGCTCTTGA...................................................................................................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.................GTCGATACAGCAAAAGTGGCTCTTGAAC.................................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	0	0	1	0
.............TCTTGTCGATACAGCAAAAG.............................................................................................................................................	20	4	0.50	2	0	0	0	0	0	0	0	0	2	0
............................AAAAGTGGCTCTTGAACCC...............................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	1	0
................TGTCGATACAGCAAAAGTGA..........................................................................................................................................	20	4	0.25	1	0	1	0	0	0	0	0	0	0	0
..................TCGATACAGCAAAAGTGG..........................................................................................................................................	18	4	0.25	1	0	0	0	0	0	0	0	0	1	0
................TGTCGATACAGCAAAAGTGT..........................................................................................................................................	20	4	0.25	1	0	0	0	0	0	0	1	0	0	0
................TGTCGATACAGCAAAAGTGGCTT.......................................................................................................................................	23	4	0.25	1	0	1	0	0	0	0	0	0	0	0
..............CTTGTCGATACAGCAAAAGT............................................................................................................................................	20	4	0.25	1	0	0	0	0	0	0	0	0	1	0
.............TCTTGTCGATACAGCAAAAGTGGA.........................................................................................................................................	24	4	0.25	1	0	0	0	0	0	0	0	0	1	0
..............CTTGTCGATACAGCAAAAGTGGCCA.......................................................................................................................................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0
...................CGATACAGCAAAAGTGGCTC.......................................................................................................................................	20	4	0.25	1	0	0	0	0	0	0	0	0	1	0
.............TCTTGTCGATACAGCAAAAGT............................................................................................................................................	21	4	0.25	1	0	0	0	0	0	0	0	0	1	0
.................GTCGATACAGCAAAAGTGGC.........................................................................................................................................	20	4	0.25	1	0	1	0	0	0	0	0	0	0	0
....................GATACAGCAAAAGTGGC.........................................................................................................................................	17	4	0.25	1	0	0	0	0	0	0	0	0	1	0
.............TCTTGTCGATACAGCAAAAGTGGCCA.......................................................................................................................................	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0
..............CTTGTCGATACAGCAAAAGTGGCA........................................................................................................................................	24	4	0.25	1	0	0	0	0	0	0	0	0	1	0
.................GTCGATACAGCAAAAGTGGCC........................................................................................................................................	21	4	0.25	1	0	1	0	0	0	0	0	0	0	0
................TGTCGATACAGCAAAAGTGGCTG.......................................................................................................................................	23	4	0.25	1	0	0	0	0	1	0	0	0	0	0
..............CTTGTCGATACAGCAAAAGTGGCTCA......................................................................................................................................	26	4	0.25	1	0	0	0	0	0	0	0	0	1	0
...............TTGTCGATACAGCAAAAGTGGCC........................................................................................................................................	23	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.............TCTTGTCGATACAGCAA................................................................................................................................................	17	5	0.20	1	0	0	0	0	0	0	0	0	1	0
...............TTGTCGATACAGCAA................................................................................................................................................	15	5	0.20	1	0	0	0	0	0	0	0	0	1	0
................................................................................................TCGCAGAACTAGAACTATCGGA........................................................	22	16	0.19	3	0	0	0	0	0	0	0	0	3	0
................TGTCGATACAGCAAAAGTGGCCAC......................................................................................................................................	24	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................CGCAGAACTAGAACTATCGGACGATT...................................................	26	15	0.13	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................CGCAGAACTAGAACTATCGGA........................................................	21	16	0.13	2	0	0	0	0	0	0	0	2	0	0
.................................................................................................CGCAGAACTAGAACTATCGG.........................................................	20	16	0.13	2	0	0	0	0	0	0	0	2	0	0
..................................................................................................GCAGAACTAGAACTATCGG.........................................................	19	16	0.06	1	0	0	0	0	0	0	0	0	1	0

dpe_118

scaffold_16:1315623-1315696 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-30.3	-29.4	-29.3