ID:

dpe_1167

 Coordinate:

scaffold_2113:738-888 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-56.9 -56.6 -56.6

Flybase annnotation

exon [dper_GLEANR_636:2]; CDS [Dper\GL24033-cds]; intron [Dper\GL24033-in]

No Repeatable elements found

mature
  1. scaffold_1891:1098-1121 +
  2. dpe_1167  scaffold_2113:810-833 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGTCGGAGCCGGCAAGCGCCCCAAAGAGCACGGCAGAGCCCGCGTACGCGGTGATCGTGAAGCGTCCACAGCTGTGCATGTCCACGCCGAATCTGTCCCAGCCAGCCCCCGGAGCTGCTGGACTGCAATGGGAACAGCGCCAAGGCATCCCCGGCGGATGCAGCGGAACGCCGTGGATGCCGACGGGCACTACGCCACGCTCGACCTGAAGCGAGCCGCGGGTCCGACACGGGGTTCGGTGACTAGCACAC
**************************************************.....((((..((((.....((.(((......))))).....((((((((..(((...((((.....)))).)))...)))).)))).(((..(((((((.(((((............))))).)))))))....)))...))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total V042
embryo
 V111
male body		 V057
head
 M042
female body
...................................................................................................................TGCTGGACTGCAATGGGCACAC.................................................................................................................. 22 2 2 0.50 1 1 0 0 0
............................................................................................................................................................................................................................GGTCCGACACGGGGGTCGGTGACT....... 24 1 2 0.50 1 0 1 0 0
.........................GAGCACGGCAGAGCCCGCGTACGCGGT....................................................................................................................................................................................................... 27 0 2 0.50 1 0 1 0 0
..........................................................................................................................CTGCAATGGGAACAGCGCCAAGGC......................................................................................................... 24 0 2 0.50 1 0 0 0 1
..................................................................................................................................................ATGCCCGGCGGATGCACCG...................................................................................... 19 2 2 0.50 1 0 0 1 0
.........................................................................................................................................................................................................CGACCTGAAGCGAGCCGCGGGC............................ 22 1 2 0.50 1 0 0 0 1
.....................................................................................................................................................................................................................................CGGGGTTCGGTGACTAGCA... 19 0 2 0.50 1 1 0 0 0
..........................................................................................................................CTGCAATGGGAACAGCGCCAA............................................................................................................ 21 0 2 0.50 1 0 1 0 0
..........................AGCACGGCAGAGCCCGCGTACGCGGT....................................................................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0
..................................................................................................................................................ATCCCGGGCGGATGCGGCG...................................................................................... 19 2 3 0.33 1 0 0 1 0
..................................................................................................................................................ATTCCCGGCGGATGCACCG...................................................................................... 19 2 3 0.33 1 0 0 1 0
...CGTAACCGGCAAGCGGCCC..................................................................................................................................................................................................................................... 19 3 11 0.09 1 0 0 0 1
......................................................................................................................................................CCGGCGGATGGAGCAGGACG................................................................................. 20 3 12 0.08 1 0 0 1 0
............................................................AGCGACCGCCGCTGTGCATG........................................................................................................................................................................... 20 3 14 0.07 1 0 0 1 0
..................................................................................................................................................ATGCCCGGCCGATGCACCG...................................................................................... 19 3 20 0.05 1 0 0 1 0

Anti-sense strand reads

TCAGCCTCGGCCGTTCGCGGGGTTTCTCGTGCCGTCTCGGGCGCATGCGCCACTAGCACTTCGCAGGTGTCGACACGTACAGGTGCGGCTTAGACAGGGTCGGTCGGGGGCCTCGACGACCTGACGTTACCCTTGTCGCGGTTCCGTAGGGGCCGCCTACGTCGCCTTGCGGCACCTACGGCTGCCCGTGATGCGGTGCGAGCTGGACTTCGCTCGGCGCCCAGGCTGTGCCCCAAGCCACTGATCGTGTG
**************************************************.....((((..((((.....((.(((......))))).....((((((((..(((...((((.....)))).)))...)))).)))).(((..(((((((.(((((............))))).)))))))....)))...))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total V057
head
 M042
female body
 V042
embryo
.....CTCGGGCGTTCGCGGCGT.................................................................................................................................................................................................................................... 18 2 5 0.20 1 1 0 0
............................................................................................GACCGGGCAGGTCGGGGGCCT.......................................................................................................................................... 21 3 5 0.20 1 0 1 0
.....................................................................................................GGGCGGGGGCCTTGACGAC................................................................................................................................... 19 2 5 0.20 1 0 0 1
..........................................................CTTCGCGGGTGTAGACAAGT............................................................................................................................................................................. 20 3 10 0.10 1 1 0 0
.......................................................................................................................................TCGCGGTGCCGTAGGGCCA................................................................................................. 19 3 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_2113:688-938 + dpe_1167 AGTCGGAGCCGGCAAGCGCCCCAAAGA-----GC-------------------A---CGGCA------------G---AGCCCGCGTAC--GCGGTGATCGTGAAG-------------------------------CG--------------------------------TCCACAGCTGTGCATGTCCACGCCG------------AAT---CTGTCCCAGCCAGCCCCCGGAGCTGCTG---------------------------------------------------------------------------------------------------------------------------------------------GACTGCAATGGGAACAGCGCCAAGGCATCCCCGGCGGATGCAGCGGAACGCCGTGGATGCCGACGGGCACTACGCCACGCTCGACCTGAAGCGAGCCGCGGGT-----CCGACACGG-----GGTTCGGTGACTAGCA--CAC
dp5 XL_group1a:6061112-6061362 - AAGAAGAAA--------------------------------------------G---CGGCACCGGCCCCGCCCCCTGG--CTTCGCGGGTGCACTGGCTGCAAACGGCAATGGAAACGCTTCGGGAGCGGATACAATATCGCTGGCCTCCACCACGAACTCGCT------GTCGGAGACGCTGACGCCCACC---------------------ACACCGCAGCCAGCACCGCGGATCAGCACTCCGTTGCCCTATGCCGCACCCACACCCACACCCATTTCTCCTCCCACACCAACTC--------CCGCTCTACCGA----GCAG------------------------------------------------------------------------------------------------------------------------------CT-----------------------------CCC--------------------------------CACCAAC
droWil2 scf2_1100000004590:1926433-1926615 - AAAAAAAAA--------------------------------------------ACCACAGCACCGGCTCCACCACCAGA--CGCT-GGG--GCGATGTCA---------------------------GCTGATAGCATTTCATTGGCCTC------------CAC------CACGGCATCGATAACAGAGACGGCA------------CCA---ATGCCGCAACCGGCGCCTAGGATCACCACACCACAGACCC-------------------------------CACA----------------------------------------------------------------------------------------------------------------------------------GACGCCACAA----------AC---GCCGCTGACTCCGCCTC---------------------------------------------CAC---------------TG
droVir3 scaffold_12928:2447283-2447508 + GTTCAGTGC--------------------------------------------A-----------ACGCCAACGG---AGCCCGCGTAT--GCGGTGATTGTGAAG-------------------------------CG--------------------------------TCCGCAGCTGTGCATGTCCACGCCC------------AAT---T-----------------------------------------TG------------------------------------------------GCCAGCACGCCGGAGCTGGAAGCG-----GAAACAGAAAGGGA------------------GCCTTCGCTGGAGCTTGACTGCAATGGAAACAGCGCCAAGACG------CCGGATGCCGCCG----------AT---TGCGGACACTATGCCACAGTTGAGCTCAA-----------GCCGAATCCAATGCCG-----GCTC---------------TG
droMoj3 scaffold_6473:14221069-14221280 + CGCC-GACG--------------------------------------------C---CGGCGCCAACTCCAACGG---AGCCCGCTTAT--GCGGTCATTGTGAAG-------------------------------CG--------------------------------TCCACAGCTGTGCATGTCCACGCCC------------AAC---T-----------------------------------------TG------------------------------------------------GCCAGCACGCCGGAACATGTAACG-----GAAGCGGAGACGCA------------------GCCGTCGTTTGAGGTGGACTGCAATGGCAACAGCGCCAAGACC------TTGGATG----------------------GCGGACTCTATGCCACGCTAGAGCGCAG-----------GCCCTA-CT-------------------------------CG
droGri2 scaffold_15203:9590538-9590808 + TATC-C---AGCCACACAGACGCA-GACCCAGGCACAGAGACAGACACAGACAC---AGACACAGAATGC---GG---AGCCCGCATAT--GCGGTGATTGTGAAA-------------------------------CG--------------------------------TCCCCAGATGTGCATGTCGACGCCA------------AAT---T-----------------------------------------TG------------------------------------------------GCCAGCACACCGGAGCTGGAAATG-----GAAATGGAAACGGATATGGAAATGGAATCGGAGTCGTTGCATCAGCTGGACTGTAATGGCAATAGTGCCAAGACA------CCGGATGCCACCG----------AT---GGTGGACACTATGCGACACTGGACCTCAA-----------ATCA-------------------------------------C
droAna3 scaffold_12929:2145535-2145704 - AAGAAGAAA--------------------------------------------A---CGGCGCCGGCTCCTCCGCCCGA--GCATCTGAGT---------------------------------GGCGGGGACACGGTGTCCCTAGCTTC------------ACT------GCCGGAAGTGGTGACTCCTTCCACTCCGGTGAATGGCAAT---GTCCCCCAACCGGCACCCAGGATCACCACGCCCCTGCCAGTGGC------------------------C------AG------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-----------------------------GTC--------------------------------CGCCGGT
droBip1 scf7180000396434:141514-141683 - AAGAAGAAA--------------------------------------------A---CGGCGCCGGCTCCTCCGCCGGA--GCATCTGAGT---------------------------------GGCGGGGACACGGTGTCCCTTGCTTC------------CCT------GCCGGAAGTGGCCACTCCGCCCACGCCTGTGAATGGCAAT---GTCCCCCAGCCGGCACCCAGGATCACCACACCCCTACCCGTGGC------------------------C------AG------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-----------------------------GCC--------------------------------CGCCGGT
droKik1 scf7180000302798:519960-520237 - AAAAAGAAG--------------------------------------------A---CGGCGCCGGCACCGCCACC--------------T---------------------------------GGCGAGGACACCATATCGCTAGCCTC------------CAT------TCCAGAGCCGGTGACACCCACGGCC------------ATG---GTGCCGCAACCGGCGCCCAGGATCACAAGTCCGCTGCCAACTAG------------------------------------------------TGCAGCGCCACAA----GTAAATGGGAAT-----GGTAATGGA------------------ACCCCCAATGGAAGTCCTCTGGAA----------------ACA------CCCAATGGCATCC--CTCAGGGAA--------CATCCAAAGGCACAACCAATGAAAG-----------TCCACATGGAACCCCGAATGGAACCCCCCAAGGAACA---CT
droFic1 scf7180000453927:42981-43171 - AAGAAGAAA--------------------------------------------A---CAGCCCCGGCTCCTCCGCCCGA--TTCCCAAAGT---------------------------------GGTGGCGACACCATATCACTGGCTTC------------ACT------CCCGGAACCGGTGACACCCACTCCG------------AAT---ATTCCGCAACCGGCTCCCAGGATCACAACACCTCTGCCCACTGC------------------------TCCTCCGGCAGGAAATATTACTGCCCCACTGCCCCAA----ACGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGAAA----
droEle1 scf7180000491011:545793-545993 - AAGAAGAAA--------------------------------------------A---CAGCTCCGGCACCACCGCCAGA--TTTCCAAAAC---------------------------------GGTGGTGATAACATATCACTGGCCTC------------ACT------TCCGGAACCGGTGACACCAACCCCG------------AATAGTATGCCGCAACCTGCTCCCAGGATTACAACACCTCTGCCAATTGT------------------------ACCCACTGC---------CAATCCTCCACTACCGCAA----ATCAATGGGAAT-----A----------------------------------------TGAACG-----------------------------------------------------------------------------------------------------------------------------------GTAATGGA
droRho1 scf7180000779506:337541-337732 - AAAAAGAAA--------------------------------------------A---CAGCACCGGCTCCACCGCCAGA--TTTCCAAAGT---------------------------------GGTGGTGATAATGTATCACTGGCTTC------------GCT------TCCGGAACCGGTAACACCAACTCCG------------AAT---GTACCGCAACCAGCTCCCAGGATTACAACACCTCTGCCCATTGC------------------------TCCGGCCAC---------CAATCCTCCACTGCCCCAA----ATCAATGGGAAT-----GTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGGA
droBia1 scf7180000301760:4923132-4923320 + ATATCC---CGGCAGCTAGCCTAAAAA--------------------------G---C----------------G---AACCCGCCTAT--GCGGTGATTGTCAAG-------------------------------CG--------------------------------TCCCCAGCTGTGCATGTCCACGCCA------------AAT---C-----------------------------------------TC------------------------------------------------TCTGG--------------------------------------------------------GCCCCCTCTGGAGTTGGACTGCAATGGAAATAGCTCAAAATCC------CCGGATGAC----GACTCCGTGGAT------GGCCACTATGCCACACTGGACCTGAA-----------GCCA---CC-------------------------------AT
droTak1 scf7180000415195:130800-130987 - AAGAAGAAA--------------------------------------------ACACCGGCACCGGCACCACCGCCGGA--CTTCCAAAGT---------------------------------GGCGGGGATAATATATCACTGGCCTC------------GCTGCCACTTCCTGAAGCGGTGAC---CACTCCG------------AAT---ATTCCGCAGCCAGCTCCCAGGATCACCACACCATTGCCCATTGC------------------------GCCGGCGGT---------TAATCCGCCATTGCCTTTG----GTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGCAA----
droEug1 scf7180000409048:140095-140275 - AAGAAGAAA--------------------------------------------A---CGGCACCGGCTCCACCGCCAGA--TTTTCAAAGT---------------------------------GGCGGAGATAATATATCATTGGCTTC------------TCT------TCCGGAACCAGTTACACCTACGCCG------------AAT---GTACCGCAACCAGCTCCTAGGATTACCACACCTTTGCCCGTCGC------------------------TCCGGCTGC---------CAATCCTCCTCTTCCCCAA----CTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGCA-----
dm3 chrX:2242116-2242296 - AAAAAGAAA--------------------------------------------A---CGGCACCGGCTCCACCGCCGGA--CTTTCAAAGT---------------------------------GGGGGAGACAATATATCACTGGCCTC------------ACT------ACCGGAACCGGTCACACCTACCCCG------------AAT---ATTCCGCAACCAGCGCCTAGGATAACCACTCCCTTGCCCATTGC------------------------CCCGACAGC---------CAATCCTCCACTTGCCCAA----GTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGCA-----
droSim2 x:2070816-2071001 - AAAAAGAAA--------------------------------------------A---CGGCACCGGCTCCACCGCCGGA--CTTTCAAAGT---------------------------------GGGGGAGACAGTATATCACTGGCCTC------------ACT------ACCGGAACCGGTCACACCTACCCCG------------AAT---ATTCCGCAACCAGCGCCTAGGATAACCACTCCCTTGCCCATTGC------------------------CCCGACAGC---------CAATCCTCCACTTCCCCAA----GTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGCATTGGC
droSec2 scaffold_10:2018391-2018576 - AAAAAGAAA--------------------------------------------A---CGGCACCGGCTCCACCGCCGGA--CTTTCAAAGT---------------------------------GGGGGAGACAGTATATCACTGGCCTC------------ACT------ACCGGAACCGGTCACACCTACCCCG------------AAT---ATTCCGCAACCAGCGCCTAGGATAACCACTCCCTTGCCCATTGC------------------------CCCGACAGC---------CAATTCTCCACTTCCCCAA----GTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGCATTGGC
droYak3 X:6096173-6096358 + ATATTC---CGGCTGCCAGCTTGAAGA--------------------------G---C----------------G---AACCCGCCTAT--GCGGTAATTGTCAAG-------------------------------CG--------------------------------ACCCCAGCTCTGCATGTCCACGCCC------------AAT---C-----------------------------------------TA------------------------------------------------TCCGGTGCCGT-----------------------------------------------------------GGAGTTGGACTGCAATGGGAACAGCTCAAAGTCG------CCGGATGAG----GACTCAACGGAT------GGCCATTATGCTACATTGGAACTGAA-----------GCCT---CC-------------------------------GA
droEre2 scaffold_4644:2202212-2202387 - AAAAAGAAA--------------------------------------------A---CGGCACCGGCTCCGCCACCGGA--CTTCCAAAGT---------------------------------GGGGGAGACAATATATCACTGGCCTC------------ACT------ACCGGAACCGGTGACACCTACCCCG------------AAT---ATTCCGCAACCAGCGCCTAGGACAACCACTCCCTTGCCCATTGC------------------------CCCGACAGC---------CAATCCTCCACTTCCCCAA----GTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
AGTCGGAGCCGGCAAGCGCCCCAAAGA-----GC-------------------A---CGGCA------------G---AGCCCGCGTAC--GCGGTGATCGTGAAG-------------------------------CG--------------------------------TCCACAGCTGTGCATGTCCACGCCG------------AAT---CTGTCCCAGCCAGCCCCCGGAGCTGCTG---------------------------------------------------------------------------------------------------------------------------------------------GACTGCAATGGGAACAGCGCCAAGGCATCCCCGGCGGATGCAGCGGAACGCCGTGGATGCCGACGGGCACTACGCCACGCTCGACCTGAAGCGAGCCGCGGGT-----CCGACACGG-----GGTTCGGTGACTAGCA--CACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................GA-----GC-------------------A---CGGCA------------G---AGCCCGCGTAC--GCGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2720.501000001
.................................................................................................................................................................................................................................................................................................................................................................................................CTGCAATGGGAACAGCGCCAAGGC.....................................................................................................................2420.501010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACCTGAAGCGAGCCGCGGGC-----...................................2220.501010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGG-----GGTTCGGTGACTAGCA--...1920.501001000
.................................................................................................................................................................................................................................................................................................................................................................................................CTGCAATGGGAACAGCGCCAA........................................................................................................................2120.501000001
..........................A-----GC-------------------A---CGGCA------------G---AGCCCGCGTAC--GCGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2620.501001000
dp5
AAGAAGAAA--------------------------------------------G---CGGCACCGGCCCCGCCCCCTGG--CTTCGCGGGTGCACTGGCTGCAAACGGCAATGGAAACGCTTCGGGAGCGGATACAATATCGCTGGCCTCCACCACGAACTCGCT------GTCGGAGACGCTGACGCCCACC---------------------ACACCGCAGCCAGCACCGCGGATCAGCACTCCGTTGCCCTATGCCGCACCCACACCCACACCCATTTCTCCTCCCACACCAACTC--------CCGCTCTACCGA----GCAG------------------------------------------------------------------------------------------------------------------------------CT-----------------------------CCC--------------------------------CACCAACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................AAACGGCAATGGAAACGCTTCGGG................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020100001000
.....................................................................................................................................................................................................................................................................ACCCACACCCACACCCATTTCTCCTCC..............................................................................................................................................................................................................................................2711.0010100000000
.......................................................................................................................................................................................GACGCCCACC---------------------ACACCGCA................................................................................................................................................................................................................................................................................................................1811.0010100000000
............................................................................................CACTGGCTGCAAACGGCAATGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
..............................................................................................................................................................................................................................................................................................CCCACACCAACTC--------CCGCTCTACCGA----...........................................................................................................................................................................................................2511.0010100000000
.....................................................................................................................................................CCACCACGAACTCGCT------GTCGGA.............................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
...............................................................................................................................................TGGCCTCCACCACGAACTCGCT------GT.................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.........................................................................................................................................................................................................................................GGATCAGCACTCCGTTGCCCT................................................................................................................................................................................................................................................................................2111.0010100000000
.................................................................................CTTCGCGGGTGCACTGGCTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.............................................................................................................................................................AACTCGCT------GTCGGAGACGCTGA.....................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
................................................................................................................................................GGCCTCCACCACGAACTCGCT------GTCGGA.............................................................................................................................................................................................................................................................................................................................................................2711.0010010000000
.....................................................................................................................................................CCACCACGAACTCGCT------GTC................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...........................................................................................GCACTGGCTGCAAACGGCAATGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
...................................................................................................TGCAAACGGCAATGGAAACGCTTC...................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
......................................................................................................AAACGGCAATGGAAACGCTTCGGGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
.............................................................................................................AATGGAAACGCTTCGGGAGCGGATACC......................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
................................................................................................................................................................................................................................................CACTCCGTTGCCCTATGCCG..........................................................................................................................................................................................................................................................................2011.0010100000000
..........................................................................................TGCACTGGCTGCAAACGG..................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
droWil2
AAAAAAAAA--------------------------------------------ACCACAGCACCGGCTCCACCACCAGA--CGCT-GGG--GCGATGTCA---------------------------GCTGATAGCATTTCATTGGCCTC------------CAC------CACGGCATCGATAACAGAGACGGCA------------CCA---ATGCCGCAACCGGCGCCTAGGATCACCACACCACAGACCC-------------------------------CACA----------------------------------------------------------------------------------------------------------------------------------GACGCCACAA----------AC---GCCGCTGACTCCGCCTC---------------------------------------------CAC---------------TGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................CACAA----------AC---GCCGCTGACTCC......................................................................1912.00200020
.....................................................................................................................................................C------------CAC------CACGGCATCGATAACAGAGAC..............................................................................................................................................................................................................................................................................................................................................2511.00101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................CACAA----------AC---GCCGCTGACTCCGC....................................................................2111.00100100
...........................................................................................................................................................................................................................................ATCACCACACCACAGACCC-------------------------------CACA----------------------------------------------------------------------------------------------------------------------------------GACGC......................................................................................................2811.00100010
.....................................................................................................................................................................................................................................................CACAGACCC-------------------------------CACA----------------------------------------------------------------------------------------------------------------------------------GACGCCAC...................................................................................................2111.00100010
................................................................................................................................................................................CATCGATAACAGAGACGGC...........................................................................................................................................................................................................................................................................................................................................1911.00100010
..............................................................................................ATGTCA---------------------------GCTGATAGCATTTCATTGGCCT.........................................................................................................................................................................................................................................................................................................................................................................................2811.00101000
.......................................................................................................................................................................................................................TGCCGCAACCGGCGCCTAGG...................................................................................................................................................................................................................................................................................................2011.00101000
.........................................................................................................................................................................................................................................................GACCC-------------------------------CACA----------------------------------------------------------------------------------------------------------------------------------GACGCCACAA----------AC---GCCG..............................................................................2511.00101000
..................................................................................................................................................................CAC------CACGGCATCGATAACAGA.................................................................................................................................................................................................................................................................................................................................................2111.00100010
............................................................................AGA--CGCT-GGG--GCGATGTCA---------------------------G..............................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.........................................................................ACCAGA--CGCT-GGG--GCGATGTCA---------------------------GCTG...........................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
droVir3
GTTCAGTGC--------------------------------------------A-----------ACGCCAACGG---AGCCCGCGTAT--GCGGTGATTGTGAAG-------------------------------CG--------------------------------TCCGCAGCTGTGCATGTCCACGCCC------------AAT---T-----------------------------------------TG------------------------------------------------GCCAGCACGCCGGAGCTGGAAGCG-----GAAACAGAAAGGGA------------------GCCTTCGCTGGAGCTTGACTGCAATGGAAACAGCGCCAAGACG------CCGGATGCCGCCG----------AT---TGCGGACACTATGCCACAGTTGAGCTCAA-----------GCCGAATCCAATGCCG-----GCTC---------------TGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................GTAT--GCGGTGATTGTGAAG-------------------------------C....................................................................................................................................................................................................................................................................................................................................................................................................2013.003000000000000010000000000000000000000000000000000000000000000020
..........................................................................................................................................G--------------------------------TCCGCAGCTGTGCATGT..................................................................................................................................................................................................................................................................................................................................................1812.002002000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACTATGCCACAGTTGAGCT........................................................2111.001000000000000000000100000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCG----------AT---TGCGGACACTATGC....................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................G------CCGGATGCCGCCG----------AT---TGCGGA............................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
......................................................................AACGG---AGCCCGCGTAT--GCGGTGA............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................AGCTGTGCATGTCCACGCCC------------AAT---T-----------------------------------------TG------------------------------------------------............................................................................................................................................................................................................................2611.001000000000000000000000000000000000001000000000000000000000000000
.......................................................................................................AAG-------------------------------CG--------------------------------TCCGCAGCTGTGCATGTCCA...............................................................................................................................................................................................................................................................................................................................................2511.001000000000000000100000000000000000000000000000000000000000000000
..TCAGTGC--------------------------------------------A-----------ACGCCAACGG---AGCCCGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
...CAGTGC--------------------------------------------A-----------ACGCCAACGG---AG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000001000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................ACGCCGGAGCTGGAAGCG-----GA.............................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000001
......................................................................................TAT--GCGGTGATTGTGAAG-------------------------------CG--------------------------------TCCGCA.............................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................GGTGATTGTGAAG-------------------------------CG--------------------------------TCCGCAGCTGTGC......................................................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................GAAACAGAAAGGGA------------------GCCTTCGCTGG....................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.....................................................A-----------ACGCCAACGG---AGCCCGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................ACG------CCGGATGCCGCCG----------AT---TGC...............................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
......................................................................AACGG---AGCCCGCGTAT--GCGGTGATTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................GACTGCAATGGAAACAGCGCCA.........................................................................................................................2211.001000000000000000000000000000000000000100000000000000000000000000
...CAGTGC--------------------------------------------A-----------ACGCCAACGG---A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000100000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................AGCGCCAAGACG------CCGGATGCCGC...................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................CAGCACGCCGGAGCTGGA........................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................AACAGAAAGGGA------------------GCCTTCGCTGGAGC.................................................................................................................................................2611.001000000000001000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACAGCGCCAAGACG------CCGGA.........................................................................................................2611.001000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................GGGA------------------GCCTTCGCTGGAGCTT...............................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCACAGTTGAGCTCAA-----------GCC.......................................2211.001000000000001000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................G------CCGGATGCCGCCG----------AT---TGCGGAC...........................................................................2311.001010000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................AAACAGCGCCAAGACG------CCGGATGC......................................................................................................2411.001000000000000000000000000000000000000000000000000000000000001000
.TTCAGTGC--------------------------------------------A-----------ACGCCAACGG---AGCCCGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................CACGCCGGAGCTGGAAGCG-----...............................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................GACTGCAATGGAAACAGCGCC..........................................................................................................................2111.001000000000000000000000000000000001000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACTATGCCACAGTTGAGC.........................................................2111.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................GGAGCTTGACTGCAATGGAAACAG..............................................................................................................................2411.001000000000000000000000010000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................CCGGAGCTGGAAGCG-----GAA............................................................................................................................................................................................1811.001000000000000000000000000000000001000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTATGCCACAGTTGAGCT........................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................AT--GCGGTGATTGTGAAG-------------------------------CG--------------------------------TCCG...............................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000001000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAAGACG------CCGGATGCCGCCG----------A......................................................................................2411.001000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGACACTATGCCACAGTTGAGCTC.......................................................2611.001000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................................................................................................................................................G-----GAAACAGAAAGGGA------------------GCCTTCGC.......................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCACAGTTGAGCTCAA-----------GCCGA.....................................2311.001000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACAGCGCCAAGAC.....................................................................................................................2011.001000000000000001000000000000000000000000000000000000000000000000
................................................................................................................................................................................................GCCC------------AAT---T-----------------------------------------TG------------------------------------------------GCCAGCACGCCGG...............................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................GACTGCAATGGAAACAGCGC...........................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
GTTCAGTGC--------------------------------------------A-----------ACGCCAACGG---AG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................AAGGGA------------------GCCTTCGCTGGAGCT................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCACAGTTGAGCTCAA-----------GC........................................2111.001000000000100000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACACTATGCCACAGTTGAGC.........................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTATGCCACAGTTGAGCTCAA-----------GCCGA.....................................2811.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGATGCCGCCG----------AT---TGC...............................................................................1811.001000000000000000000000000000000010000000000000000000000000000000
...CAGTGC--------------------------------------------A-----------ACGCCAACGG---AGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000100000000000000000000000000000000000000000000000
droMoj3
CGCC-GACG--------------------------------------------C---CGGCGCCAACTCCAACGG---AGCCCGCTTAT--GCGGTCATTGTGAAG-------------------------------CG--------------------------------TCCACAGCTGTGCATGTCCACGCCC------------AAC---T-----------------------------------------TG------------------------------------------------GCCAGCACGCCGGAACATGTAACG-----GAAGCGGAGACGCA------------------GCCGTCGTTTGAGGTGGACTGCAATGGCAACAGCGCCAAGACC------TTGGATG----------------------GCGGACTCTATGCCACGCTAGAGCGCAG-----------GCCCTA-CT-------------------------------CGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................GACC------TTGGATG----------------------GCGGACTCTATG.....................................................................2311.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................TTGAGGTGGACTGCAATGGCAACAGCGCC..........................................................................................................................2911.001100000
..................................................................................................................................................................................................................................................................................................................................................................................GTCGTTTGAGGTGGACTGC.........................................................................................................................................1911.001001000
.....................................................................................................................................................................................................................................................................................................................................................................................GTTTGAGGTGGACTGCAATGGCAACAG..............................................................................................................................2711.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................ATG----------------------GCGGACTCTATGCCACGC...............................................................2111.001100000
.................................................................................................................................................................................................................................................................................................................................................................................CGTCGTTTGAGGTGGACTGCAAT......................................................................................................................................2311.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................GACTGCAATGGCAACAGCGC...........................................................................................................................2011.001100000
....................................................................................................GTGAAG-------------------------------CG--------------------------------TCCACAGCTGTGC......................................................................................................................................................................................................................................................................................................................................................2111.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................GGACTGCAATGGCAACAGCGCCAAGAC.....................................................................................................................2711.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................GTTTGAGGTGGACTGCAATGGC...................................................................................................................................2211.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGCCACGCTAGAGCGCAG-----------G.........................................2211.001001000
..................................................................................................................................................................................................................................................................................................................................ATGTAACG-----GAAGCGGAGACGCA------------------GC.............................................................................................................................................................2411.001000001
................................................................................................................................................................................................GCCC------------AAC---T-----------------------------------------TG------------------------------------------------GCCAGCACGCCGGA..............................................................................................................................................................................................................2411.001100000
droGri2
TATC-C---AGCCACACAGACGCA-GACCCAGGCACAGAGACAGACACAGACAC---AGACACAGAATGC---GG---AGCCCGCATAT--GCGGTGATTGTGAAA-------------------------------CG--------------------------------TCCCCAGATGTGCATGTCGACGCCA------------AAT---T-----------------------------------------TG------------------------------------------------GCCAGCACACCGGAGCTGGAAATG-----GAAATGGAAACGGATATGGAAATGGAATCGGAGTCGTTGCATCAGCTGGACTGTAATGGCAATAGTGCCAAGACA------CCGGATGCCACCG----------AT---GGTGGACACTATGCGACACTGGACCTCAA-----------ATCA-------------------------------------CSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
............................................................................................CGGTGATTGTGAAA-------------------------------CG--------------------------------TCC................................................................................................................................................................................................................................................................................................................................................................1911.00101
droAna3
AAGAAGAAA--------------------------------------------A---CGGCGCCGGCTCCTCCGCCCGA--GCATCTGAGT---------------------------------GGCGGGGACACGGTGTCCCTAGCTTC------------ACT------GCCGGAAGTGGTGACTCCTTCCACTCCGGTGAATGGCAAT---GTCCCCCAACCGGCACCCAGGATCACCACGCCCCTGCCAGTGGC------------------------C------AG------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-----------------------------GTC--------------------------------CGCCGGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................CGGCTCCTCCGCCCGA--GCATCTGAGT---------------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
..........................................................................................................................................GTCCCTAGCTTC------------ACT------GCCGGAAGT..........................................................................................................................................................................................................................................................................................................................................................2411.001100000
....................................................................................................................................................................................................................................ACCCAGGATCACCACGCCC.......................................................................................................................................................................................................................................................................................1911.001010000
..........................................................................................................................................................................................................................................GATCACCACGCCCCTGCCAGC...............................................................................................................................................................................................................................................................................2111.001010000
...............................................................................................................................................................................................CCACTCCGGTGAATGGCAAT---........................................................................................................................................................................................................................................................................................................................2011.001010000
.............................................................................................................................................................................................................................................CACCACGCCCCTGCCAGT...............................................................................................................................................................................................................................................................................1811.001010000
.....GAAA--------------------------------------------A---CGGCGCCGGCTCCTCCGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
..........................................................................................................................................................................................................................................GATCACCACGCCCCTGCCAGT...............................................................................................................................................................................................................................................................................2111.001000010
...........................................................................................................................................................................................................................................ATCACCACGCCCCTGCCAGTGGC------------------------C------AG------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-----------------------------..........................................2811.001100000
.........................................................................................................................................................................................CTCCTTCCACTCCGGTGA...................................................................................................................................................................................................................................................................................................................................1811.001010000
droBip1
AAGAAGAAA--------------------------------------------A---CGGCGCCGGCTCCTCCGCCGGA--GCATCTGAGT---------------------------------GGCGGGGACACGGTGTCCCTTGCTTC------------CCT------GCCGGAAGTGGCCACTCCGCCCACGCCTGTGAATGGCAAT---GTCCCCCAGCCGGCACCCAGGATCACCACACCCCTACCCGTGGC------------------------C------AG------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-----------------------------GCC--------------------------------CGCCGGTSizeHit CountTotal NormTotal
No Reads
droKik1
AAAAAGAAG--------------------------------------------A---CGGCGCCGGCACCGCCACC--------------T---------------------------------GGCGAGGACACCATATCGCTAGCCTC------------CAT------TCCAGAGCCGGTGACACCCACGGCC------------ATG---GTGCCGCAACCGGCGCCCAGGATCACAAGTCCGCTGCCAACTAG------------------------------------------------TGCAGCGCCACAA----GTAAATGGGAAT-----GGTAATGGA------------------ACCCCCAATGGAAGTCCTCTGGAA----------------ACA------CCCAATGGCATCC--CTCAGGGAA--------CATCCAAAGGCACAACCAATGAAAG-----------TCCACATGGAACCCCGAATGGAACCCCCCAAGGAACA---CTSizeHit CountTotal NormTotal
No Reads
droFic1
AAGAAGAAA--------------------------------------------A---CAGCCCCGGCTCCTCCGCCCGA--TTCCCAAAGT---------------------------------GGTGGCGACACCATATCACTGGCTTC------------ACT------CCCGGAACCGGTGACACCCACTCCG------------AAT---ATTCCGCAACCGGCTCCCAGGATCACAACACCTCTGCCCACTGC------------------------TCCTCCGGCAGGAAATATTACTGCCCCACTGCCCCAA----ACGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGAAA----SizeHit CountTotal NormTotal
No Reads
droEle1
AAGAAGAAA--------------------------------------------A---CAGCTCCGGCACCACCGCCAGA--TTTCCAAAAC---------------------------------GGTGGTGATAACATATCACTGGCCTC------------ACT------TCCGGAACCGGTGACACCAACCCCG------------AATAGTATGCCGCAACCTGCTCCCAGGATTACAACACCTCTGCCAATTGT------------------------ACCCACTGC---------CAATCCTCCACTACCGCAA----ATCAATGGGAAT-----A----------------------------------------TGAACG-----------------------------------------------------------------------------------------------------------------------------------GTAATGGASizeHit CountTotal NormTotal
No Reads
droRho1
AAAAAGAAA--------------------------------------------A---CAGCACCGGCTCCACCGCCAGA--TTTCCAAAGT---------------------------------GGTGGTGATAATGTATCACTGGCTTC------------GCT------TCCGGAACCGGTAACACCAACTCCG------------AAT---GTACCGCAACCAGCTCCCAGGATTACAACACCTCTGCCCATTGC------------------------TCCGGCCAC---------CAATCCTCCACTGCCCCAA----ATCAATGGGAAT-----GTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGGASizeHit CountTotal NormTotal
No Reads
droBia1
ATATCC---CGGCAGCTAGCCTAAAAA--------------------------G---C----------------G---AACCCGCCTAT--GCGGTGATTGTCAAG-------------------------------CG--------------------------------TCCCCAGCTGTGCATGTCCACGCCA------------AAT---C-----------------------------------------TC------------------------------------------------TCTGG--------------------------------------------------------GCCCCCTCTGGAGTTGGACTGCAATGGAAATAGCTCAAAATCC------CCGGATGAC----GACTCCGTGGAT------GGCCACTATGCCACACTGGACCTGAA-----------GCCA---CC-------------------------------ATSizeHit CountTotal NormTotal
No Reads
droTak1
AAGAAGAAA--------------------------------------------ACACCGGCACCGGCACCACCGCCGGA--CTTCCAAAGT---------------------------------GGCGGGGATAATATATCACTGGCCTC------------GCTGCCACTTCCTGAAGCGGTGAC---CACTCCG------------AAT---ATTCCGCAGCCAGCTCCCAGGATCACCACACCATTGCCCATTGC------------------------GCCGGCGGT---------TAATCCGCCATTGCCTTTG----GTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGCAA----SizeHit CountTotal NormTotal
No Reads
droEug1
AAGAAGAAA--------------------------------------------A---CGGCACCGGCTCCACCGCCAGA--TTTTCAAAGT---------------------------------GGCGGAGATAATATATCATTGGCTTC------------TCT------TCCGGAACCAGTTACACCTACGCCG------------AAT---GTACCGCAACCAGCTCCTAGGATTACCACACCTTTGCCCGTCGC------------------------TCCGGCTGC---------CAATCCTCCTCTTCCCCAA----CTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGCA-----SizeHit CountTotal NormTotal
No Reads
dm3
AAAAAGAAA--------------------------------------------A---CGGCACCGGCTCCACCGCCGGA--CTTTCAAAGT---------------------------------GGGGGAGACAATATATCACTGGCCTC------------ACT------ACCGGAACCGGTCACACCTACCCCG------------AAT---ATTCCGCAACCAGCGCCTAGGATAACCACTCCCTTGCCCATTGC------------------------CCCGACAGC---------CAATCCTCCACTTGCCCAA----GTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGCA-----SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................................................ATAACCACTCCCTTGCCCAT...............................................................................................................................................................................................................................................................................2016.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................ACTGGCCTC------------ACT------ACCGGAACCGGTC......................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................ACCTACCCCG------------AAT---ATTCCGCAACC.............................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................AAAGT---------------------------------GGGGGAGACAATATATC.................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................TTCAAAGT---------------------------------GGGGGAGACAATATA...................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................AACCAGCGCCTAGGATAACC.............................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................TC------------ACT------ACCGGAACCGGTCACACCTAC..............................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................TAGGATAACCACTCCCTTGCCCATTGC------------------------....................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................GC---------CAATCCTCCACTTGCCCA................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................GGA--CTTTCAAAGT---------------------------------GGGGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................A--CTTTCAAAGT---------------------------------GGGGGAGAC.........................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................CAAAGT---------------------------------GGGGGAGACAATA.....................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................CCGACAGC---------CAATCCTCCACTTGCCCAA----GT.........................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................CCACCGCCGGA--CTTTCAAAGT---------------------------------GGGGGA............................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................AAAGT---------------------------------GGGGGAGACAATATATA.................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................TTTCAAAGT---------------------------------GGGGGAGACAAT......................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.........................................................................................................................................................................................................................CCGCAACCAGCGCCTAGGATAACCAC...........................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................ATTCCGCAACCAGCGCCTAG....................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................CT------ACCGGAACCGGTCACACCTACCC............................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
............................................................................GGA--CTTTCAAAGT---------------------------------GGGGGA............................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................CTGGCCTC------------ACT------ACCGGAACCGG........................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...................................................................................................................................................CTC------------ACT------ACCGGAACCGGTCACACC.................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................GGTCACACCTACCCCG------------AAT---ATT.....................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................GCCGGA--CTTTCAAAGT---------------------------------GGGGGAGAC.........................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................TACCCCG------------AAT---ATTCCGCAACCAGCGCC.......................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................GC------------------------CCCGACAGC---------CAATCCTCCA........................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................TTTCAAAGT---------------------------------GGGGGAGACAATATAT..................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
...............................................................................................................................GGAGACAATATATCACTGGCC..........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................GCCGGA--CTTTCAAAGT---------------------------------GGGGGA............................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................CCGCAACCAGCGCCTAGGATA................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................ATAACCACTCCCTTGCCCA................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................CCGCAACCAGCGCCTAGGATAAC..............................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................TTTCAAAGT---------------------------------GGGGGAGAC.........................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................CCTTGCCCATTGC------------------------CCCGACAG............................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
.........................................................................GCCGGA--CTTTCAAAGT---------------------------------GGGGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................T---ATTCCGCAACCAGCGCCTAGGATA................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................CTGGCCTC------------ACT------ACCGGAACCGGTCAC....................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................CAATCCTCCACTTGCCCA................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................T------ACCGGAACCGGTCACACCTACC.............................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AAAAAGAAA--------------------------------------------A---CGGCACCGGCTCCACCGCCGGA--CTTTCAAAGT---------------------------------GGGGGAGACAGTATATCACTGGCCTC------------ACT------ACCGGAACCGGTCACACCTACCCCG------------AAT---ATTCCGCAACCAGCGCCTAGGATAACCACTCCCTTGCCCATTGC------------------------CCCGACAGC---------CAATCCTCCACTTCCCCAA----GTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGCATTGGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................CACCGCCGGA--CTTTCAAAGT---------------------------------GGGGG.............................................................................................................................................................................................................................................................................................................................................................................................................2512.00202000000000000000
........A--------------------------------------------A---CGGCACCGGCTCCACCGCCGGA--CTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
...................................................................TCCACCGCCGGA--CTTTCAAAGT---------------------------------GGGG..............................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
..................................................................................................................................GACAGTATATCACTGGCCTC------------ACT------ACCGGA.............................................................................................................................................................................................................................................................................................................................................................2911.00100010000000000000
...............................................................................................................................................TGGCCTC------------ACT------ACCGGAACCGG........................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
...........................................................GCACCGGCTCCACCGCCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
.................................................................................................................................................................................................................................................................................................................CTCCACTTCCCCAA----GTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGCA.....2411.00100001000000000000
droSec2
AAAAAGAAA--------------------------------------------A---CGGCACCGGCTCCACCGCCGGA--CTTTCAAAGT---------------------------------GGGGGAGACAGTATATCACTGGCCTC------------ACT------ACCGGAACCGGTCACACCTACCCCG------------AAT---ATTCCGCAACCAGCGCCTAGGATAACCACTCCCTTGCCCATTGC------------------------CCCGACAGC---------CAATTCTCCACTTCCCCAA----GTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGCATTGGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................GGA--CTTTCAAAGT---------------------------------GGGGGAGACA........................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000
.............................................................................GA--CTTTCAAAGT---------------------------------GGGGGAGACAGT......................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
.....................................................................CACCGCCGGA--CTTTCAAAGT---------------------------------GGG...............................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
droYak3
ATATTC---CGGCTGCCAGCTTGAAGA--------------------------G---C----------------G---AACCCGCCTAT--GCGGTAATTGTCAAG-------------------------------CG--------------------------------ACCCCAGCTCTGCATGTCCACGCCC------------AAT---C-----------------------------------------TA------------------------------------------------TCCGGTGCCGT-----------------------------------------------------------GGAGTTGGACTGCAATGGGAACAGCTCAAAGTCG------CCGGATGAG----GACTCAACGGAT------GGCCATTATGCTACATTGGAACTGAA-----------GCCT---CC-------------------------------GASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTACATTGGAACTGAA-----------GCCT---CC-------------------------------..2512.00200110000000
........................................................................................................................................................................................................................................................................................................................................................................................................................CG------CCGGATGAG----GACTCAACGG.......................................................................................2112.00200110000000
..........GGCTGCCAGCTTGAAGA--------------------------G---C----------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00202000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................GAACAGCTCAAAGTCG------CCGGATGAG----GA...............................................................................................2712.00200000020000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTATGCTACATTGGAACTGA......................................................2212.00200000020000
...................................................................................................................................................................................................................................................................................................................CCGGTGCCGT-----------------------------------------------------------GGAGTTGGACT...........................................................................................................................................2111.00101000000000
.................................................................................CCGCCTAT--GCGGTAATTGTCAAG-------------------------------C....................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
.....C---CGGCTGCCAGCTTGAAGA--------------------------G---C----------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAG----GACTCAACGGAT------GGC............................................................................2011.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAG----GACTCAACGGAT------GGCC...........................................................................2111.00110000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................AGCTCAAAGTCG------CCGGATGAG----GACT.............................................................................................2511.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGCTACATTGGAACTGAA-----------GCCT---CC-------------------------------..2811.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTACATTGGAACTGAA-----------GCCT---CC-------------------------------..2411.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................GAACAGCTCAAAGTCG------CCGGA.........................................................................................................2111.00101000000000
................................................................................................................................................................................................GCCC------------AAT---C-----------------------------------------TA------------------------------------------------TCCGGTGCCGT-----------------------------------------------------------GG....................................................................................................................................................2311.00101000000000
..................................................................................................TTGTCAAG-------------------------------CG--------------------------------ACCCCAGCTCTGC......................................................................................................................................................................................................................................................................................................................................................2311.00100100000000
.................................................................................................................................................................................................................................................................................................................................................................................................CTGCAATGGGAACAGCTCAAAGTCG------CCGG..........................................................................................................2911.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................AGCTCAAAGTCG------CCGGATGAG----.................................................................................................2111.00100000010000
.....................................................................................................................................................................................................................................................................................................................GGTGCCGT-----------------------------------------------------------GGAGTTGGACT...........................................................................................................................................1911.00110000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTCG------CCGGATGAG----GACTCAACG........................................................................................2511.00100000000001
..........................................................................................................................................................................................................................................................................................................................................................................................................GAACAGCTCAAAGTCG------CCGGATGAG----G................................................................................................2611.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................GGAACAGCTCAAAGTCG------CCGGA.........................................................................................................2211.00101000000000
........................................................................................................................................................................................................................................................................................................................GCCGT-----------------------------------------------------------GGAGTTGGACTGCAATGGGAAC................................................................................................................................2711.00100000010000
.............TGCCAGCTTGAAGA--------------------------G---C----------------G---AACCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
......................GAAGA--------------------------G---C----------------G---AACCCGCCTAT--GCGGTAATTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................3011.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCG------CCGGATGAG----GACTCAACGGAT------...............................................................................2711.00101000000000
........................................................................................................................................................................................................................................................................................................................GCCGT-----------------------------------------------------------GGAGTTGGACTGC.........................................................................................................................................1811.00100100000000
.................................................................................................................................................................................................................................................................................................................................................................................................CTGCAATGGGAACAGCTCAAA........................................................................................................................2111.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................CAATGGGAACAGCTCAAAGTC.....................................................................................................................2111.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAACAGCTCAAAGTC.....................................................................................................................1911.00100000010000
droEre2
AAAAAGAAA--------------------------------------------A---CGGCACCGGCTCCGCCACCGGA--CTTCCAAAGT---------------------------------GGGGGAGACAATATATCACTGGCCTC------------ACT------ACCGGAACCGGTGACACCTACCCCG------------AAT---ATTCCGCAACCAGCGCCTAGGACAACCACTCCCTTGCCCATTGC------------------------CCCGACAGC---------CAATCCTCCACTTCCCCAA----GTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................................................................................................AACCACTCCCTTGCCCATTGC------------------------CCCGA...............................................................................................................................................................................................................................................26121.002100000021
.................................................................................................................................AGACAATATATCACTGGCCTC------------A...........................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
..............................................................................A--CTTCCAAAGT---------------------------------GGGGGAGACA........................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
................................................................................................................................................................................................................................................................................................AGC---------CAATCCTCCACTTCCCCA................................................................................................................................................................................................................2111.0011000000
............................................................................GGA--CTTCCAAAGT---------------------------------GGGGG.............................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000
.........................................................................ACCGGA--CTTCCAAAGT---------------------------------GGGGG.............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
.....................................................................CGCCACCGGA--CTTCCAAAGT---------------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
..........................................................................................................................................................................................................................................GACAACCACTCCCTTGCCCATT..............................................................................................................................................................................................................................................................................2211.0011000000
......................................................................................................................................ATATATCACTGGCCTC------------ACT------ACCGGAACCG.........................................................................................................................................................................................................................................................................................................................................................2911.0010000100
........A--------------------------------------------A---CGGCACCGGCTCCGCCACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000

Generated: 06/08/2015 at 03:50 PM