dpe_1154

exon [dper_GLEANR_15834:4]; CDS [Dper\GL14973-cds]; CDS [Dper\GL14973-cds]; exon [dper_GLEANR_15834:3]; intron [Dper\GL14973-in]

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CGGCGGTGGGGGTAGTGCCGCCAAGGCCAGTTGCCCACGCTCGGACGGGGGTTCCATCCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCCGCCAAAGCCAAATCCGAGGACGCTGAGGATGATGCTGACGAGGATGATGAGAAGAACGACGAGGATGAGACTGATGCCCGATGCACCCCCAGGAGGCAGCCGAGATCGAAGAGCCCGACGAGGATGATGAGGATGATGTGAAGACTGCC *******************************************************************************************************************************************************************************************((....((.((.((....)).)).))....))........................*********************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M021 embryo	V111 male body	M042 female body	V042 embryo	V057 head
..................................................................................................................................................................................................................................CGAGGATGAGACTGATGCC.......................................................................	19	0	1	2.00	2	2	0	0	0	0
....GGTGGGGGTGGTGCCGCCAAGGCC................................................................................................................................................................................................................................................................................................	24	1	1	1.00	1	0	0	1	0	0
....................................ACGCTCGGACGGGGGTTCCA....................................................................................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................GACGAGGATGATGAGGATGATGTGA........	25	0	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................GAACGACGAGGATGAGACT.............................................................................	19	0	1	1.00	1	0	1	0	0	0
.............................................................................................................................................................................................CTGAGGATGATGCTGACGAGGATGAT.....................................................................................................	26	0	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................................GAGGATGATGCTGACGAGGAT........................................................................................................	21	0	1	1.00	1	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................GATGATGTGAAGACGACC	18	2	5	0.20	1	1	0	0	0	0
...................................................................................................................................................................................................................TGTTGAGAAGAACGAAGA.......................................................................................	18	2	7	0.14	1	0	1	0	0	0
......................................GCTAGGACGCGGGTTCGAT...................................................................................................................................................................................................................................................................	19	3	8	0.13	1	0	0	0	0	1
.......................................................................................................................................................................................................................................................................CTGCCGAGATTGAAGAGCG..................................	19	3	20	0.05	1	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................AGGATGATGAGGATGATGATAACA.....	24	3	20	0.05	1	1	0	0	0	0
............................................................................................................................................................................................................AATAGGATGATGAGACGAA.............................................................................................	19	3	20	0.05	1	0	0	0	0	1

GCCGCCACCCCCATCACGGCGGTTCCGGTCAACGGGTGCGAGCCTGCCCCCAAGGTAGGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGGGCGGTTTCGGTTTAGGCTCCTGCGACTCCTACTACGACTGCTCCTACTACTCTTCTTGCTGCTCCTACTCTGACTACGGGCTACGTGGGGGTCCTCCGTCGGCTCTAGCTTCTCGGGCTGCTCCTACTACTCCTACTACACTTCTGACGG *********************************************************************((....((.((.((....)).)).))....))........................*******************************************************************************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	V111 male body	V057 head
..............................................................................................................................................................................................................CTCCTACTACTCTTCTTGCT..........................................................................................	20	0	1	1.00	1	1	0	0
.............................................................................................................................................................................................................................TTGCTGCTCCTACTTTTACT...........................................................................	20	2	2	0.50	1	0	1	0
.................................................................................................................................................................GTCGGGCGGTATCGGGTT.........................................................................................................................................	18	2	6	0.17	1	0	0	1
.................................................................................................................................................................GTCGGGCGGTTACGGTTG.........................................................................................................................................	18	2	14	0.14	2	2	0	0
.................................................................................................................................................................................................................................................................ACCTCCGTCTGCCCTAGCTT.......................................	20	3	8	0.13	1	1	0	0
..................................................................................................................................................................................................................................................................CCTCCGTCTGCCCAAGCTT.......................................	19	3	17	0.12	2	2	0	0
.................................................................................................................................................................................................................................................................TCCTCCGTCGGCGCGAGCGT.......................................	20	3	10	0.10	1	0	0	1
.........................CGGTCAATGGGTGCGAGTGT...............................................................................................................................................................................................................................................................................	20	3	17	0.06	1	0	0	1
........................................................................................................................................................................GGTTTCGGTTTACGCTGC..................................................................................................................................	18	2	20	0.05	1	0	0	1

Species	Coordinate	ID	Alignment
droPer2	scaffold_21:649124-649439 +	dpe_1154	CGGCGGTGGGGGTAGTGCCGCCAAGGCCAGTTGCCCACGCTCGGACGGGGGTTCCATCCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCCGCCAAAGCCAAATCCGAGGA---------C---GCT---GAGGATGA---------------------TG--------------CTG---------------------------ACGAGGATGATGAG---------AAGAACGACGA---------------------------------GGATGAGACTGATGCCC--------GA-----TGCACCCCCAGGAGGCAGCCGA---GATCGAAGAGC---CCGACGAGGATGATGAGGA------T---GATGTG----AAGACTGCC
dp5	XL_group1e:5721530-5721682 +		CA-----------------------------------------------------------------------------------------------------------------------------------------------------------------GGTCACCAAAGCCAAGTCCGAGGA---------C---GCT---GAGGATGA---------------------TG--------------CTG---------------------------ACGAGGATGATGAG---------AAGAACGACGA---------------------------------GGATGAGACTGATGCCGA--------------TGCAC-CCCAGGAGGCAGCCGA---GATCGAAGAGC---CCGACGAGGATGATGAGGA------T---GATGTG----AAGACTGCC
droWil2	scf2_1100000004909:5726384-5726502 +		G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGA---------T---ACT---TCTGATGA---CGATGA--------------TGATGATGATG------------------ATG---------------ACG---------------------ACGACGA---------------------------------CGATGATGATGAT---------------------------GATGATGATGACGA---CGACGATGATG---ACGACGAAGAGGAGGACGATGATGTGGAAG--------------TGGC
droVir3	scaffold_12928:92826-92947 -		G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA---------C---ACT---CAGGATGA---------------------CG--------ATGATAAGAGTGATGAGGAGGATG---------------AAG---------------------AGGATGAAGATGATGACGATGATGAAGA---------------------------------------------------CGATGACGATGATGA------GGACGATG---AAGATGAGGATGAGGATGA---------------------GGATGATG
droMoj3	scaffold_6359:1107467-1107602 -		G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGA---------C---GAT---GATGATGA---------------------TG--------------ATGACG------------------------ATGATGATGATGAC---------GATGGTGATGA------TGATGACGATGGTGACGA---------TGAT------------------------------------GACGAGGAAGAC------GACGAAGATGATGACGAAAATGATGACGATGA---TGTC---GACATT---GATGACTGTC
droGri2	scaffold_15203:7326504-7326667 -		AA------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGCCAAAGCAGAGGCCGAGGC---------T---C--------------------------------------------------CCGATGCTG------CGG------------ACGTGGAAGATGACCCAGATGCTGCAGTTAAGGC------------------AATTGAACGTAAGACTAAGGAGACAGATGCCG---------------------CTCGGGAGGCACCCGA---AATAGAGGAGC---CCGACGAGGACGACGAGGA------G---GAGCCG----AAG---AGC
droAna3	scaffold_13335:2337658-2337804 -		G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAAGCTGGAGTTCGAGGG---------C---GAT---GAGGAGGC---------------------CG--------------CCG---------------------------ATGCCTCCAGCAAG---------AAGAGCGACAA---------------------------------TGACGAGACTGATGCCC---------------------GCCAGGAGGCGGCCGA---GATCGAAGAGC---CTGACGAGGAGATCGAGGAAGCCGAG---GACTTG----AAGACCACC
droBip1	scf7180000396687:6181-6327 +		G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAAGCTGGAGTTCGAGGG---------C---GAT---GAGGAGGC---------------------AA--------------CCG---------------------------ATGCCTCCACCAAG---------AAGAGTGACAA---------------------------------CGACGAGACTGATGCCC---------------------GCCAGGAGGCGGCAGA---AATCGAAGAGC---CCGACGAGGAGCTCGAGGAGGCCGAG---GACTTA----AAGACTACC
droKik1	scf7180000302684:1070547-1070684 +		G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAA---------C---GCC---GACGATGA---------------------TG--------------ATGGTGATCAGGAGGATG---------------AGTATGAT------GAGGATGAGGGCG---------------------------------------AGGAGTACGATGAGC---------------------ATGAGCACGCTAACGATACCACGGAGGAGG---CCGACGAGGAAGACGAGGA------A---TATGTC----AACATTGCC
droFic1	scf7180000454050:159526-159647 -		A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------GAC---AAGGACGA------GGATGAGGATGAGGATG--------------AG---------------G------------AAAAGGACGAGGAC---------AAGGAGGAT---------------------------------------------------------------------------AAGGATGAGGAAGA---GAACGTAGATA---AGGTCGAGGATGAGGATGAGGAAGAG---GACGAG----AACAAGGAC
droEle1	scf7180000491087:278394-278536 -		C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----------------G--CCA-A------GGCCAAAAAGGACAAGGAGAAGG--------------AG---------------G------------AGAAGG------AT---------AAGAGTGACAA---------------------------------CGATGAGACTGATTCCC---------------------CAAAAGAGGCTGCCGA---GATCGAGGAGC---CCGACGAGGAGGTGGATGAGGCTGACCCAGAGGCC-AAGACAACCACC
droRho1	scf7180000777289:34059-34218 +		G-------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCGCCGAACCGGAAGCGGATGT---------GGCCG--CCA-A------GGACAAAAA--------------GGACA------------------------------------------AGGAGAAG------GAGGAGAAGAGTGACAA---------------------------------CGATGAGACTGATTCCC---------------------CACAAGAGGCTGCCGA---GATCGAAGAGC---CCGACGAGGAAGTGGAGGAGGCTGAACAAGAGGCC----AAGACCACC
droBia1	scf7180000302126:3236607-3236760 +		G-------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCGCCGAGCCGGAAGCTGAGGT---------GACCT--CCA-A------GGCCAAGAA--------------GGACAAGGAAG---------------------------------------------AG---------AAGGGCGACAA---------------------------------CGATGAGACTGATTCCC---------------------CACAAGAGGCCGCCGA---GATCGAGGAGC---CCGACGAGGAGGTGGAGGAGGCCGACCCAGAGGCC----AAGACCGCC
droTak1	scf7180000415394:159057-159198 +		G-------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCGCCGAGCCGGAGGCCGAAGGGGCCGTCGTGGCCT--CCA-A------GGCCAAGAA--------------GGACAAGGAGG---------------------------------------------AG---------AAGAGCGACAA---------------------------------CGATGAGACTGATTCCC---------------------CACAAGAGGCTGCCGA---GATCGAGGAGC---CCGACGAGGAGGTGGAGGAGGC-------------------------C
droEug1	scf7180000409538:358473-358623 -		G-------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGGCGAACCTGAATCGGATGT---------G---T--CTA-A------GGCCAAAAA--------------GGACAAGGAAG---------------------------------------------AG---------AAAAGTGACAA---------------------------------CGATGAGACTGATTCCC---------------------CACAAGAGGCTGCCGA---AATCGAGGAGC---CTGACGAGGAGGTGGACGACGCTGACCAAGAGACC----AAGGCCACA
dm3	chr2R:2618385-2618511 -		G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGA---------C---GAC---GAGGATGA---------------------CG--------------AAG---------------------------AAGATGAT---------------AATAACGGGAA---------------------------------CGACGAGGACGACGAGG---------------------ACGAAGAAGAAGATGACAATAATGATGACG---ATGACGAGGATGATGAAGA------T---GATAATAATGGAGACGACG
droSim2	2r:3483324-3483446 -		G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGA---------C---GAC---GAGGATGA---------------------CG--------------AAG---------------------------AAGATGAT---------------AATAACGGGAA---------------------------------CGACGAGGACGATGATG---------------------ACGAAGATAAAGATGACAATAATGATGACG---ACGACGAGGATGATGAAGA------C---GATAAT----AAAATGGAC
droSec2	scaffold_34:166927-167079 +		AG------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGTCGAGGCCGATACGGACGA---------T---------GAGG--------------------------------------------------------AGG------------ATGAGGATGATGACGACGAGGATGAGGACGAGGA---------------------------------CTACGACAGCGATTCCGGCAAGCGGGAAGAGG------TCGAGGTGGGCAGCGA---TTTCGAGGAGT---CCGACGAGGATGACGATCC------G---GATGC------------TG
droYak3	X:12506288-12506440 -		AG------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGTGGAAGCCGATACGGACGA---------G---------GAGG--------------------------------------------------------ATGATGATGATGATGATGATGATCAGGAG---------GAGGACGATGA---------------------------------CTACGACAGCGATTCCGGCAAGCGGGAAGAGG------TCGAAGTGGGCAGCGA---TTTCGAGGAGT---CCGACGAGGATGACGATGC------G---GATG---------------
droEre2	scaffold_4690:4753888-4754000 -		A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----------------GAT---AAGG-----------------------------------AGG---------------------------------------------AT---------AAGAGTGACAA---------------------------------CGATGAGACTGATTCGC---------------------CGCAGGAGGCTGCCGA---GATCGAGGAGC---CCGATGAGGAGGTGGATGATGCTGATCAGGAGGCC----AAGACCACC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

CGGCGGTGGGGGTAGTGCCGCCAAGGCCAGTTGCCCACGCTCGGACGGGGGTTCCATCCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCCGCCAAAGCCAAATCCGAGGA---------C---GCT---GAGGATGA---------------------TG--------------CTG---------------------------ACGAGGATGATGAG---------AAGAACGACGA---------------------------------GGATGAGACTGATGCCC--------GA-----TGCACCCCCAGGAGGCAGCCGA---GATCGAAGAGC---CCGACGAGGATGATGAGGA------T---GATGTG----AAGACTGCC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
........................................................................................................................................................................................................................................................................................................................CGA---------------------------------GGATGAGACTGATGCC.......................................................................................................	19	1	2.00	2	2	0	0	0	0	0
....................................ACGCTCGGACGGGGGTTCCA...........................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAGGATGATGAGGA------T---GATGTG----A........	25	1	1.00	1	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................GAACGACGA---------------------------------GGATGAGACT.............................................................................................................	19	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................................................CT---GAGGATGA---------------------TG--------------CTG---------------------------ACGAGGATGAT...............................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................GAGGATGA---------------------TG--------------CTG---------------------------ACGAGGAT..................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0

dp5

CA-----------------------------------------------------------------------------------------------------------------------------------------------------------------GGTCACCAAAGCCAAGTCCGAGGA---------C---GCT---GAGGATGA---------------------TG--------------CTG---------------------------ACGAGGATGATGAG---------AAGAACGACGA---------------------------------GGATGAGACTGATGCCGA--------------TGCAC-CCCAGGAGGCAGCCGA---GATCGAAGAGC---CCGACGAGGATGATGAGGA------T---GATGTG----AAGACTGCC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............................................................................................................................................................................................................................................................................................................................................................................................GCAC-CCCAGGAGGCAGCCGA---..............................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGAGGA------T---GATGTG----AAGACTGC.	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................ATGA---------------------TG--------------CTG---------------------------ACGAGGATGATGAG---------AAG................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATGATGAGGA------T---GATG...............	18	1	1.00	1	0	0	0	0	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................CGAGGATGATGAG---------AAGAACGAC..........................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	1
..........................................................................................................................................................................AAAGCCAAGTCCGAGGA---------C---GCT---GAG..................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................GA---------------------TG--------------CTG---------------------------ACGAGGATGATGAG---------AA.................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................................................CAAGTCCGAGGA---------C---GCT---GAG..................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGA------T---GATGTG----AAGACTG..	22	1	1.00	1	0	0	0	0	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGAGGATGATGAGGA------.......................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	1

droWil2

G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGA---------T---ACT---TCTGATGA---CGATGA--------------TGATGATGATG------------------ATG---------------ACG---------------------ACGACGA---------------------------------CGATGATGATGAT---------------------------GATGATGATGACGA---CGACGATGATG---ACGACGAAGAGGAGGACGATGATGTGGAAG--------------TGGC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGAGGAGGACGATGATGTGG.....................	23	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................GACGATGATG---ACGACGAAGAGGAGGAC...............................	27	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................GATGACGA---CGACGATGATG---ACGACG..........................................	25	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACGATGATGTGGAAG--------------TGGC	21	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................ACGATGATG---ACGACGAAGA......................................	19	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................................GATGAT---------------------------GATGATGATGACGA---CGACGAT.......................................................	27	6	0.67	4	0	0	4	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................GATGATG---ACGACGAAGAGGA...................................	20	2	0.50	1	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................ATGATG---ACGACGAAGAGG....................................	18	3	0.33	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................GAT---------------------------GATGATGATGACGA---CGACGAT.......................................................	24	7	0.29	2	0	0	1	1	0
..............................................................................................................................................................................................................................................................................................G---------------------ACGACGA---------------------------------CGATGATGATGAT---------------------------...............................................................................	21	20	0.25	5	0	0	5	0	0
..............................................................................................................................................................................................................................................GATGATGATG------------------ATG---------------ACG---------------------ACGAC..........................................................................................................................................................	21	20	0.20	4	2	0	2	0	0
......................................................................................................................................................................................................................................................................................................................................................................GAT---------------------------GATGATGATGACGA---CGAC..........................................................	21	20	0.20	4	2	0	2	0	0
.................................................................................................................................................................................................................................................GATGATG------------------ATG---------------ACG---------------------ACGACGA---------------------------------CGAT...................................................................................................................	24	7	0.14	1	0	0	0	1	0
...............................................................................................................................................................................................................CTGATGA---CGATGA--------------TGATGATGATG------------------A........................................................................................................................................................................................................	25	8	0.13	1	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................GATGATGACGA---CGACGATGA.....................................................	20	19	0.11	2	0	0	2	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................GATGATGATGACGA---CGACGA........................................................	20	20	0.10	2	0	0	2	0	0
....................................................................................................................................................................................................................GA---CGATGA--------------TGATGATGATG------------------ATG---------------ACG---------------------...............................................................................................................................................................	25	20	0.10	2	0	0	0	2	0
........................................................................................................................................................................................................................................................................................................................................................................T---------------------------GATGATGATGACGA---CGACGAT.......................................................	22	10	0.10	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................GATGAT---------------------------GATGATGATGACGA---CGA...........................................................	23	20	0.10	2	0	1	0	1	0
.................................................................................................................................................................................................................................................GATGATG------------------ATG---------------ACG---------------------ACGAC..........................................................................................................................................................	18	20	0.10	2	2	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................GATGATGATGACGA---CGAC..........................................................	18	20	0.10	2	2	0	0	0	0
.................................................................................................................................................................................................................................................GATGATG------------------ATG---------------ACG---------------------ACGACGA---------------------------------.......................................................................................................................	20	20	0.10	2	0	0	2	0	0
........................................................................................................................................................................................................................................................................................................................CGA---------------------------------CGATGATGATGAT---------------------------GATGATG........................................................................	23	20	0.10	2	0	0	0	2	0
.......................................................................................................................................................................................................................................................................................................................................................................................................GATGATGACGA---CGACGATGATG---................................................	22	11	0.09	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................GA---CGACGATGATG---ACGACG..........................................	19	13	0.08	1	0	0	0	1	0
....................................................................................................................................................................................................................................................GATG------------------ATG---------------ACG---------------------ACGACGA---------------------------------CGATG..................................................................................................................	22	14	0.07	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................GATGATGATGACGA---CGACGAT.......................................................	21	15	0.07	1	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................................GATGATGAT---------------------------GATGATGATGACGA---C.............................................................	24	20	0.05	1	0	0	0	1	0
................................................................................................................................................................................................................................................TGATGATG------------------ATG---------------ACG---------------------ACGAC..........................................................................................................................................................	19	20	0.05	1	0	0	1	0	0
..............................................................................................................................................................................................................................................GATGATGATG------------------ATG---------------ACG---------------------ACGACGA---------------------------------CG.....................................................................................................................	25	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................ATG---------------ACG---------------------ACGACGA---------------------------------CGATGATG...............................................................................................................	21	20	0.05	1	0	0	0	1	0
...............................................................................................................................................................................................................................................ATGATGATG------------------ATG---------------ACG---------------------ACGAC..........................................................................................................................................................	20	20	0.05	1	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................GAT---------------------------GATGATGATGACGA---CGA...........................................................	20	20	0.05	1	0	0	0	1	0
.............................................................................................................................................................................................................................GA--------------TGATGATGATG------------------ATG---------------ACG---------------------ACGA...........................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................ATGATGACGA---CGACGATGA.....................................................	19	20	0.05	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................GATGATGACGA---CGACGAT.......................................................	18	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................A---------------------------------CGATGATGATGAT---------------------------GATGAT.........................................................................	20	20	0.05	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................GATGATGAT---------------------------GATGATGATGAC...................................................................	21	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................GATGA--------------TGATGATGATG------------------ATG---------------ACG---------------------AC.............................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................................................................................GATGA--------------TGATGATGATG------------------ATG---------------AC.....................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................T---------------------------GATGATGATGACGA---CGAC..........................................................	19	20	0.05	1	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................TGATGAT---------------------------GATGATGATGACG..................................................................	20	20	0.05	1	0	0	0	1	0
..............................................................................................................................................................................................................................................GATGATGATG------------------ATG---------------ACG---------------------ACGA...........................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................TG---------------ACG---------------------ACGACGA---------------------------------CGATGA.................................................................................................................	18	20	0.05	1	0	0	0	1	0
.............................................................................................................................................................................................................................GA--------------TGATGATGATG------------------ATG---------------ACG---------------------AC.............................................................................................................................................................	21	20	0.05	1	0	0	1	0	0
.............................................................................................................................................................................................................................GA--------------TGATGATGATG------------------ATG---------------ACG---------------------A..............................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................A---------------------------------CGATGATGATGAT---------------------------GATGATGAT......................................................................	23	20	0.05	1	0	0	1	0	0
....................................................................................................................................................................................................................GA---CGATGA--------------TGATGATGAT............................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0
...........................................................................................................................................................................................................................ATGA--------------TGATGATGATG------------------ATG---------------AC.....................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
..............................................................................................................................................................................................................................................GATGATGATG------------------ATG---------------ACG---------------------ACG............................................................................................................................................................	19	20	0.05	1	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................CGACGA---------------------------------CGATGATGATGAT---------------------------G..............................................................................	20	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................ACGACGA---------------------------------CGATGATGATGAT---------------------------...............................................................................	20	20	0.05	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................GATGAT---------------------------GATGATGATGACGA---C.............................................................	21	20	0.05	1	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................CGACGA---------------------------------CGATGATGATGAT---------------------------GATGA..........................................................................	24	20	0.05	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................CG---------------------ACGACGA---------------------------------CGATGATGATGAT---------------------------GATG...........................................................................	26	20	0.05	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................TG---------------ACG---------------------ACGACGA---------------------------------CGATGAT................................................................................................................	19	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................GAT---------------------------GATGATGATGACGA---CG............................................................	19	20	0.05	1	0	0	1	0	0

droVir3

G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA---------C---ACT---CAGGATGA---------------------CG--------ATGATAAGAGTGATGAGGAGGATG---------------AAG---------------------AGGATGAAGATGATGACGATGATGAAGA---------------------------------------------------CGATGACGATGATGA------GGACGATG---AAGATGAGGATGAGGATGA---------------------GGATGATG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.........................................................................................................................................................................................................................................................................................................................GAAGATGATGACGATGATGA......................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................A---------------------------------------------------CGATGACGATGATGA------GGAC.......................................................	20	2	1.50	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................CGATG---AAGATGAGGATGAGGA................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................TGACGATGATGA------GGACGATG---AAA.............................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................TGATGACGATGATGAAGA---------------------------------------------------CGAT............................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................GATGAGGAGGATG---------------AAG---------------------AGGATGAT.......................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................TG---AAGATGAGGATGAGGATGA---------------------GGA.....	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................ATGATGA------GGACGATG---AAGA............................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................GA---------------------------------------------------CGATGACGATGATGA------GGA........................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................GATGA------GGACGATG---AAGATGAGG.......................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................AGGATGA---------------------CG--------ATGATAAGAGTG..................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GA---------------------------------------------------CGATGACGATGATGA------GGAC.......................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................GATGA------GGACGATG---AAGAT...........................................	18	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................CGATGACGATGATGA------GGAC.......................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................CGATGACGATGATGA------GGACG......................................................	20	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................GATGACGATGATGA------GGAC.......................................................	18	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................ATGAAGATGATGACGATGAT........................................................................................................................................	20	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGATGAGGATGA---------------------GGAT....	18	12	0.25	3	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TGAAGATGATGACGATGATGAG.....................................................................................................................................	22	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGA---------C---GAT---GATGATGA---------------------TG--------------ATGACG------------------------ATGATGATGATGAC---------GATGGTGATGA------TGATGACGATGGTGACGA---------TGAT------------------------------------GACGAGGAAGAC------GACGAAGATGATGACGAAAATGATGACGATGA---TGTC---GACATT---GATGACTGTC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........................................................................................................................................................................................................AT---GATGATGA---------------------TG--------------ATGACG------------------------ATGAT.....................................................................................................................................................................................	23	20	0.10	2	1	0	0	0	0	1
.................................................................................................................................................................................................................GATGA---------------------TG--------------ATGACG------------------------ATGATGATGATGA.............................................................................................................................................................................	26	10	0.10	1	0	1	0	0	0	0
...............................................................................................................................................................................................................ATGATGA---------------------TG--------------ATGACG------------------------ATGATGAT..................................................................................................................................................................................	23	16	0.06	1	0	0	0	0	0	1
.........................................................................................................................................................................................................AT---GATGATGA---------------------TG--------------ATGACG------------------------ATGATG....................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................................................................................GATGATGA---------------------TG--------------ATGACG------------------------AT........................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	1

droGri2

AA------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGCCAAAGCAGAGGCCGAGGC---------T---C--------------------------------------------------CCGATGCTG------CGG------------ACGTGGAAGATGACCCAGATGCTGCAGTTAAGGC------------------AATTGAACGTAAGACTAAGGAGACAGATGCCG---------------------CTCGGGAGGCACCCGA---AATAGAGGAGC---CCGACGAGGACGACGAGGA------G---GAGCCG----AAG---AGC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...................................................................................................................................................................................GCCGAGGC---------T---C--------------------------------------------------CCGATGCTG------CG.......................................................................................................................................................................................................	21	1	1.00	1	1	0

droAna3

G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAAGCTGGAGTTCGAGGG---------C---GAT---GAGGAGGC---------------------CG--------------CCG---------------------------ATGCCTCCAGCAAG---------AAGAGCGACAA---------------------------------TGACGAGACTGATGCCC---------------------GCCAGGAGGCGGCCGA---GATCGAAGAGC---CTGACGAGGAGATCGAGGAAGCCGAG---GACTTG----AAGACCACC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........................................................................................................................................................................................................................................................................................................................AA---------------------------------TGACGAGACTGATGCCC---------------------GC...............................................................................	21	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGAGC---CTGACGAGGA......................................	18	1	1.00	1	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................AG---------AAGAGCGACAA---------------------------------TGACGAG................................................................................................................	20	1	1.00	1	0	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................GCCGA---GATCGAAGAGC---CTG.............................................	19	1	1.00	1	1	0	0	0	0	0

droBip1

G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAAGCTGGAGTTCGAGGG---------C---GAT---GAGGAGGC---------------------AA--------------CCG---------------------------ATGCCTCCACCAAG---------AAGAGTGACAA---------------------------------CGACGAGACTGATGCCC---------------------GCCAGGAGGCGGCAGA---AATCGAAGAGC---CCGACGAGGAGCTCGAGGAGGCCGAG---GACTTA----AAGACTACC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAA---------C---GCC---GACGATGA---------------------TG--------------ATGGTGATCAGGAGGATG---------------AGTATGAT------GAGGATGAGGGCG---------------------------------------AGGAGTACGATGAGC---------------------ATGAGCACGCTAACGATACCACGGAGGAGG---CCGACGAGGAAGACGAGGA------A---TATGTC----AACATTGCC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------GAC---AAGGACGA------GGATGAGGATGAGGATG--------------AG---------------G------------AAAAGGACGAGGAC---------AAGGAGGAT---------------------------------------------------------------------------AAGGATGAGGAAGA---GAACGTAGATA---AGGTCGAGGATGAGGATGAGGAAGAG---GACGAG----AACAAGGAC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----------------G--CCA-A------GGCCAAAAAGGACAAGGAGAAGG--------------AG---------------G------------AGAAGG------AT---------AAGAGTGACAA---------------------------------CGATGAGACTGATTCCC---------------------CAAAAGAGGCTGCCGA---GATCGAGGAGC---CCGACGAGGAGGTGGATGAGGCTGACCCAGAGGCC-AAGACAACCACC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

G-------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCGCCGAACCGGAAGCGGATGT---------GGCCG--CCA-A------GGACAAAAA--------------GGACA------------------------------------------AGGAGAAG------GAGGAGAAGAGTGACAA---------------------------------CGATGAGACTGATTCCC---------------------CACAAGAGGCTGCCGA---GATCGAAGAGC---CCGACGAGGAAGTGGAGGAGGCTGAACAAGAGGCC----AAGACCACC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

G-------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCGCCGAGCCGGAAGCTGAGGT---------GACCT--CCA-A------GGCCAAGAA--------------GGACAAGGAAG---------------------------------------------AG---------AAGGGCGACAA---------------------------------CGATGAGACTGATTCCC---------------------CACAAGAGGCCGCCGA---GATCGAGGAGC---CCGACGAGGAGGTGGAGGAGGCCGACCCAGAGGCC----AAGACCGCC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

G-------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCGCCGAGCCGGAGGCCGAAGGGGCCGTCGTGGCCT--CCA-A------GGCCAAGAA--------------GGACAAGGAGG---------------------------------------------AG---------AAGAGCGACAA---------------------------------CGATGAGACTGATTCCC---------------------CACAAGAGGCTGCCGA---GATCGAGGAGC---CCGACGAGGAGGTGGAGGAGGC-------------------------C	Size	Hit Count	Total Norm	Total
No Reads

droEug1

G-------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGGCGAACCTGAATCGGATGT---------G---T--CTA-A------GGCCAAAAA--------------GGACAAGGAAG---------------------------------------------AG---------AAAAGTGACAA---------------------------------CGATGAGACTGATTCCC---------------------CACAAGAGGCTGCCGA---AATCGAGGAGC---CTGACGAGGAGGTGGACGACGCTGACCAAGAGACC----AAGGCCACA	Size	Hit Count	Total Norm	Total
No Reads

dm3

G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGA---------C---GAC---GAGGATGA---------------------CG--------------AAG---------------------------AAGATGAT---------------AATAACGGGAA---------------------------------CGACGAGGACGACGAGG---------------------ACGAAGAAGAAGATGACAATAATGATGACG---ATGACGAGGATGATGAAGA------T---GATAATAATGGAGACGACG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGATGATGAAGA------T---GATAA..............	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GA------T---GATAATAATGGAGACGAC.	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................GG---------------------ACGAAGAAGAAGATGACA...............................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................CGAAGAAGAAGATGACAATAAT..........................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................GGGAA---------------------------------CGACGAGGACGACGAGG---------------------ACG..............................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGAAGA------T---GATAATAATGGAGACG...	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................AGATGAT---------------AATAACGGGAA---------------------------------CGACGA.................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGATGATGAAGA------T---GAT................	18	3	0.67	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGATGAAGA------T---GATAAT.............	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................TGATGACG---ATGACGAGGA......................................	18	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................A---------C---GAC---GAGGATGA---------------------CG--------------AAG---------------------------AA........................................................................................................................................................................................	20	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGAAGA------T---GATAAT.............	18	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0

droSim2

G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGA---------C---GAC---GAGGATGA---------------------CG--------------AAG---------------------------AAGATGAT---------------AATAACGGGAA---------------------------------CGACGAGGACGATGATG---------------------ACGAAGATAAAGATGACAATAATGATGACG---ACGACGAGGATGATGAAGA------C---GATAAT----AAAATGGAC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
............................................................................................................................................................................................................................................................................................................................................................................................................................GACG---ACGACGAGGATGATGAAGA------C---G..................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................A---------------------------------CGACGAGGACGATGATG---------------------ACGAA............................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................CGACGAGGACGATGATG---------------------AC...............................................................................	19	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................CGACGAGGACGATGATG---------------------ACGAA............................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................GGACGATGATG---------------------ACGA.............................................................................	15	16	0.06	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

AG------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGTCGAGGCCGATACGGACGA---------T---------GAGG--------------------------------------------------------AGG------------ATGAGGATGATGACGACGAGGATGAGGACGAGGA---------------------------------CTACGACAGCGATTCCGGCAAGCGGGAAGAGG------TCGAGGTGGGCAGCGA---TTTCGAGGAGT---CCGACGAGGATGACGATCC------G---GATGC------------TG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.........................................................................................................................................................................................................................................................................................................................GA---------------------------------CTACGACAGCGATTCCGGC....................................................................................................	21	1	1.00	1	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................AAGCGGGAAGAGG------TCGAGGT..........................................................................	20	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................GCGGGAAGAGG------TCGAGGTGGG.......................................................................	21	1	1.00	1	0	0	1	0
............................................................................................................................................................................GGCCGATACGGACGA---------T---------GAGG--------------------------------------------------------AGG------------..........................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
...................................................................................................................................................................................ACGGACGA---------T---------GAGG--------------------------------------------------------AGG------------ATGAGG....................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGA---TTTCGAGGAGT---CC..............................................	20	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................CGGCAAGCGGGAAGAGG------TC...............................................................................	19	1	1.00	1	0	0	1	0
..........................................................................................................................................................................................................................................................................................TGAGGATGATGACGACGAGGATGT.................................................................................................................................................................	24	2	0.50	1	1	0	0	0

droYak3

AG------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGTGGAAGCCGATACGGACGA---------G---------GAGG--------------------------------------------------------ATGATGATGATGATGATGATGATCAGGAG---------GAGGACGATGA---------------------------------CTACGACAGCGATTCCGGCAAGCGGGAAGAGG------TCGAAGTGGGCAGCGA---TTTCGAGGAGT---CCGACGAGGATGACGATGC------G---GATG---------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.G------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGTGGAAGCCGATACGGACGA---------G---------GA...................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................AGCCGATACGGACGA---------G---------GAGG--------------------------------------------------------AT.......................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................TGGAAGCCGATACGGACGA---------G---------GAGG--------------------------------------------------------A........................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................CGA---------G---------GAGG--------------------------------------------------------ATGATGATGATGATGAT........................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................CGA---------G---------GAGG--------------------------------------------------------ATGATGATGAT..............................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................GGCAGCGA---TTTCGAGGAGT---CCGA............................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................ACAGCGATTCCGGCAAGCGGGAAGAGG------.................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----------------GAT---AAGG-----------------------------------AGG---------------------------------------------AT---------AAGAGTGACAA---------------------------------CGATGAGACTGATTCGC---------------------CGCAGGAGGCTGCCGA---GATCGAGGAGC---CCGATGAGGAGGTGGATGATGCTGATCAGGAGGCC----AAGACCACC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................GCCGA---GATCGAGGAGC---CCGATGAGG.......................................	25	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGAGGTGGATGATGCT.........................	21	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................AT---------AAGAGTGACAA---------------------------------CGATGAGACT.............................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0

dpe_1154

scaffold_21:649174-649389 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-3.9	-3.4