| droPer2 | 
	scaffold_20:1647630-1647880 - | 
	dpe_1136 | 
	AAACCCTTCGT----ATCCGAAAGCGAAAA-----------AA---AAGCAA---AAAA-----AAATTACAGAAGGGCAC--------------------AT----------------CCGCATAG------ATAAGCA------TTTGCATGTGTGTG----T----G----TGTGAG---------------TGTG------------TGA------------------------------------------------------------------------------------------------------------------------------------------GG------------------G----------AAATGAAAATAAACACCGATTACGCATACGCCCCGTGCGC----------CCGCCCC---TGCTATGAGCAACGTCATAATTT--------TGTCATCGCTTG----TG-T---TTTTTTCTGCAGACGCGTGCACATTACGAAGCAAACT-CTGGATTTCCTGGGCGACAAGTTCG | 
	| dp5 | 
	XR_group6:11724410-11724664 - | 
	 | 
	AAACCCTTCGT----ATCCGAAAGCGAAAA-----------AA---AAGCAA---ACAA-----AAATTACAGAAGGGCAC--------------------AT----------------CCGCATAG------ATAAGTA------TTTGCATGTGTGTGCGAGT----G----TGTGAG---------------TGTG------------CGA------------------------------------------------------------------------------------------------------------------------------------------GG------------------G----------AAATGAAAATAAACACCGATTACGCATACGCCCCATGCGC----------CCGCCCC---TGCGATGAGAAATGTCATAATTT--------TGTCATCGCTTG----TG-T---TTTTTTCTGCAGACGCGTGCACATTACGAAGCAAACT-CTGGATTTCCTGGGCGACAAGTTCG | 
	| droWil2 | 
	scf2_1100000004511:8504942-8505276 - | 
	 | 
	CTACCATTTGC----GGCCTAA--------------------A---AAGCCA---ACAAAATTACAGACACAAA--AC---TAGATGAGTGGGGACCAAAT--AAATAGGAATGAATGCCAGTGAGAGTG------------TATG--------TGTGTGTGAGTGTGTGTG--T---------------------GTG----TTTGTGCGTGTGGCATAAATAGATAAACCAACTTTGTGGCCCGCCCTACTCCCAAACAATCAGACAGAACAAAGAGAGAAAATCGAGAAAAAGGAAGAGGAAAATTTTTCAATT----------------------------------------------------------------------------------------------------------------------------------TGCATCAT------CATTTATCATGTTTTTCATTATTTA----TGCATAATTTTTCCTTTAGACGCGTTCATATCACAAAGCAAACT-TTGGACTTTCTGGGCGACAAATTCG | 
	| droVir3 | 
	scaffold_13049:22775416-22775628 - | 
	dvi_21014 | 
	GTTCCTTGAGC----AT---------------------AAATA---AATTTACAA---------T-------------------------------TGAAT--AAGCGGAAAT--------------------------------------------------------G----T-------------------------CAGGCGACGCATATTGTTTA-----------------------------------------------------------------------------------AAGGTTGCTTAATTTGCATGTAAAAGAATAATATATTGAAATTCACCTGATGCGTGGTGAATGTGTTTTTTTTTTT------------------------------------------------------------------------------------T---------------T--TTTT----TTTT---TTTTGTTAACAGTCGCGTGCACATCACAAAGCAAACT-CTGGATTTTCTGGGCGACAAATTCG | 
	| droMoj3 | 
	scaffold_6680:17392421-17392664 - | 
	 | 
	ATTCTTTGAG---------GAGTGCGCAACAAAGGCATAAATA---AAATAAAATTACA-A---T-------------------------------TGAAA--GCACGGAAATGGA---T-------------------------------------------------------GCCGAGTGGAGAGAG---------GGAGACCACACGCATTCTAGA-----------------------------------------------------------------------------------AAGGTTCTTTAATTTATATACATAACACATACATATACATACATATATAGAGCAT--------TGAATATATTCAA--------------------TGAA---------------------------------------------------------------------------------TC----CACA---TATAATTCACAGTCGCGTGCACATCACAAAGCAAACT-TTGGACTTTCTGGGTGACAAGTTTG | 
	| droGri2 | 
	scaffold_15203:1655885-1656017 + | 
	 | 
	GAAA---------------------------------CAGACGATAAAGCGA---AAAT-C---GAATTG---------------------------------AAAAAGGCATTGG---CAACATGTGTG------TGTG------TGTGTGTGTGTGTGT--------GTGTGTGTGTG---------------TGTG------------TGA------------------------------------------------------------------------------------------------------------------------------------------GG------------------C-------------TGGTTATAAATGCACA-----CGCA-----------------------------------------------------------------------------------------------------------------CACACAAACCCCTGCACCC----------------- | 
	| droAna3 | 
	scaffold_13337:19308216-19308458 - | 
	 | 
	ATGCCGCTTCTTCGGATACAA----------TTTATATAAACA---AAATAACGATGAA-T---T-------------------------------CGAAG--AAATAGACATAGG---CAGTGGCTGTCTAAA-------TTAT-TTTGCATAAGTCT----------------GTCGCTGGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGTGTACA---AGATTACTCATACGCCCTGTGTGTTGTCTCTACCCCA-----TCGCCATTAATCAC------CATTT--------T----TCATG---------C---TCTCCTCCGCAGGCGGGTTCACATCACGAAGCAAACC-CTGGACTTCCTGGGCGACAAGTTCG | 
	| droBip1 | 
	scf7180000396360:499923-500182 - | 
	 | 
	ATGCCGCTTCTTTGGATACAA----------TTTATATAAACA---AAATAACGAGGGA-T---T-------------------------------TGAAG--AAATAGACATAGA---CAGTGGCTGTCTAAA-------TTAT-TTTGCATAAGTGT----------------GTCGCAGGGAGAGAGTTATTTGTG------------TCA------------------------------------------------------------------------------------------------------------------------------------------GG------------------A----------GGACTTGGGT---AGAAGATTACTCATACGCCCTGTGTGT----------TTGCACC-TCACAATTAATCAC------CATTT--------C----TCATT---------C---TGTCCTTGGCAGGCGGGTTCACATCACCAAGCAAACC-CTGGACTTCCTGGGAGACAAGTTCG | 
	| droKik1 | 
	scf7180000302686:404475-404638 + | 
	 | 
	GA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGAAAATAAAAGTAGATTACTCATACGCCCCATGTGC----------CACCCGCACAAGCATTCATCATCATCATACCTTAACTTTCCAATCGTCATCTATGTTTGCG---TTCTTTCTGCAGCCGCGTTCACATCACCAAGCAGACT-CTGGACTTCCTGGGCGAGAAATTCG | 
	| droFic1 | 
	scf7180000454113:2346848-2347090 - | 
	 | 
	AAATATTTTGT----ATAGAAATGTGAACT-----------AA---ACATTA---AAAA-----AAAATACAA----------------------------AT----------------CCTC-TGA------AAAATTCCT--TT--------TTCGTGTAATT----A----TGTGAGG--------------AGAGAAAACCTTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTGAACATGACGTTAAATTGCTCATACGCCCTGTATGA----------CAACCCC-CATGCATTCATCAT------CATTT--------C----TGATATGTTT-TTTT---TCTCTTTTGCAGGCGAGTCCACATCACGAAACAAACT-CTGGACTTCCTGGGCGAGAAATTCG | 
	| droEle1 | 
	scf7180000491193:4244446-4244603 + | 
	 | 
	TG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGAG---------------TGTGAAAACGTATG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGCGCTTTAAGGTAGATTGCTCATACGACATGTCGGC----------CCA-----CAAGCATTCATCAT------CATTT--------C----TCATGAG----TACG---TTTCTCCGGCAGGCGCGTTCACATCACCAAACAGACT-TTGGACTTCCTGGGTGAAAAGTTCG | 
	| droRho1 | 
	scf7180000765865:2769-2938 - | 
	 | 
	TGTG------------------------------------------------------------------------------------------------------------------------------------------------------------TATTT----G----TGTGAA---------------GGTGAAAACCTATG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTGCGCATAAAGGTAGATTGCTCATACGACATGGATGT----------CGTCCCA-CAAGCATTCATCAT------CATTT--------C----TCATTTG----TGCG---TTTCTCCTGCAGGCGCGTCCACATCACCAAACAAACG-ATGGACTTCCTGGGTGAGAAATTCG | 
	| droBia1 | 
	scf7180000302193:2739267-2739444 + | 
	 | 
	ATT-------------------------------------------------------------------------------------------------------------------------------------------TATT--------TCTGTGCAAGT----G----TGTGGCAG--------------CAAAAGACCCTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAGCGCATAAATGTAGATTGCTCATACGCCCCGTATGT----------CACCCCA-CAAGCATTCATCAT------CATTT--------C----TCTTTTG----T--G---TCTCCCCTGCAGGCGCGTCCACATCACGAAACAAACT-CTGGACTTCCTGGGCGATAAGTTCG | 
	| droTak1 | 
	scf7180000415392:174081-174293 - | 
	 | 
	AAAA--------------------------------------------------------------ATTACACTAAATCAA--------------------TT----------------TTCTCTTC------AAGATTATTTATT--------TCTGTGTAATT----G----TGTGGG---------------TGTGAAAACCTTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAGCGCATAAATGTAGATTGCTCATACGCCCTGTATGT----------CAGCCCA--AGGCATTCATCAT------CATTT--------C----TCTTCTG----TGCG---TCTCTCCTGCAGGCGCGTCCACATCACCAAACAAACT-CTGGACTTCCTGGGCGACAAATTCG | 
	| droEug1 | 
	scf7180000409466:4984367-4984502 - | 
	 | 
	A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGTAGATTGCTCATACGCCTCGTATGC----------CAGCACA-CAAACATTTATCAT------CATTT--------C----TCATGTGTGTTTGCT---TTTCTCCTGCAGGCGCGTTCACATCACCAAACAAACT-CTGGACTTCCTGGGCGACAAATTCG | 
	| dm3 | 
	chr3L:19963891-19964009 + | 
	 | 
	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGCTCATACGCCCTGTAAGC----------CTGC-----CAGCATTGAACAT------CATTT--------T----TCATTTG----TGCG---TTTATCCTGCAGGCGAGTCCACATCACGAAGCAAACT-TTGGACTTCCTGGGCGACAAGTTCG | 
	| droSim2 | 
	3l:19556804-19557010 + | 
	dsi_17538 | 
	CAAA------------------------TA-----------TA---AAACAA---TGAA-----AAGATACAAA--GA---T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATGCAAGTAGATACAAATATAAAACAA--------TGAAAAGATACAAAGAT------ACATACAAGTAGATTGCTCATACGCCCTGTAAGC----------CTGT-----CAGCATTGAACAT------CATTT--------T----TCATGTG----TACG---TTTATCCTGCAGGCGCGTCCACATCACGAAGCAAACT-TTGGACTTCCTGGGCGACAAGTTCG | 
	| droSec2 | 
	scaffold_29:609181-609385 + | 
	 | 
	AATA-------------------------------------TA---AAACAA---TGAA-----AAGATACAAA--GA---T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATACAAGTAGATACAAATATAAAACAA--------TGAAAAGATACAAAAAT------ACATACAAGTAGATTGCTCATACACCCTGTAAGC----------CTGC-----CAGCATTGAACAT------AATTT--------T----TCATGTG----TACG---TTTATCCTGCAGGCGCGTCCACATCACGAAGCAAACT-TTGGACTTCCTGGGCGACAAGTTCG | 
	| droYak3 | 
	v2_chr3L_random_216:20015-20075 + | 
	 | 
	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTCTGCAGGCGCGTCCACATCACGAAGCAAACT-TTGGACTTCCTGGGCGACAAGTTCG | 
	| droEre2 | 
	scaffold_4784:19702567-19702643 + | 
	 | 
	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT--------T----TCATGCG----TGCG---TTTATCCTGCAGGCGTGTCCACATCACGAAGCAAACT-TTGGACTTCCTGGGCGACAAGTTCG |