ID:

dpe_113

 Coordinate:

scaffold_0:6116247-6116309 -

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GCATATGTGTGTATGTTTGTACAAGAAAACAAGAAGACCCCCATCGCGTAGGGATGGGTCGAGTGCGCGGTCTCCACCCAAGCGGGTATTCGGGCGCGCACTCGGCTCATCCCTACCACACCACACGAGTGGGGGGCCGTTGGGTGCATGAATATCCGGTTCC

***********************************............((((((((((((((((((((((.((...((((....))))....)).)))))))))))))))))))))).......**************************************** 		Read size # Mismatch Hit Count Total Norm Total V111

male body		 V057

head

 M042

female body

 V050

head
................................................TAGGGATGGGTCGAGTGCGCGGT............................................................................................ 23 0 1 10.00 10 3 4 0 3
..................................................GGGATGGGTCGAGTGCGCGGTC........................................................................................... 22 0 1 10.00 10 10 0 0 0
.................................................AGGGATGGGTCGAGTGCGCGGT............................................................................................ 22 0 1 10.00 10 0 9 1 0
................................................TAGGGATGGGTCGAGTGCGCGG............................................................................................. 22 0 1 6.00 6 0 4 0 2
..................................................GGGATGGGTCGAGTGCGCGGTCTC......................................................................................... 24 0 1 4.00 4 4 0 0 0
.................................................AGGGATGGGTCGAGTGCGCGGTCTC......................................................................................... 25 0 1 4.00 4 2 2 0 0
...................................................GGATGGGTCGAGTGCGCG.............................................................................................. 18 0 1 3.00 3 3 0 0 0
..............................................CGTAGGGATGGGTCGAGTGC................................................................................................. 20 0 1 3.00 3 0 3 0 0
................................................TAGGGATGGGTCGAGTGCGC............................................................................................... 20 0 1 2.00 2 0 1 1 0
..................................................GGGATGGGTCGAGTGCGCGGT............................................................................................ 21 0 1 2.00 2 2 0 0 0
..............................................CGTAGGGATGGGTCGAGTGCGCGGTC........................................................................................... 26 0 1 2.00 2 2 0 0 0
.................................................AGGGATGGGTCGAGTGCGCGGTC........................................................................................... 23 0 1 2.00 2 2 0 0 0
................................................TAGGGATGGGTCGAGTGCGCGGC............................................................................................ 23 1 1 2.00 2 0 2 0 0
..................................................GGGATGGGTCGAGTGCGCGGTCT.......................................................................................... 23 0 1 2.00 2 2 0 0 0
..................................................GGGATGGGTCGAGTGCGC............................................................................................... 18 0 1 2.00 2 2 0 0 0
..................................................GGGATGGGTCGAGTGCGCGGTCTCC........................................................................................ 25 0 1 2.00 2 2 0 0 0
.................................................AGGGATGGGTCGAGTGCGCGT............................................................................................. 21 1 1 1.00 1 1 0 0 0
...............................................................................................GCGCACTCGGCTCATCCCTACC.............................................. 22 0 1 1.00 1 0 0 1 0
..............................................................................................CGCGCACTCGGCTCATCCCTACCA............................................. 24 0 1 1.00 1 0 0 1 0
..............................................................................................CGCGCACTCGGCTCATCCCTAC............................................... 22 0 1 1.00 1 0 1 0 0
....................................................GATGGGTCGAGTGCGCGGGC........................................................................................... 20 1 1 1.00 1 0 1 0 0
.................................................AGGGATGGGTCGAGTGCGC............................................................................................... 19 0 1 1.00 1 0 1 0 0
................................................TAGGGATGGGTCGAGTGGGCGGA............................................................................................ 23 2 1 1.00 1 0 1 0 0
...............................................GTAGGGATGGGTCGAGTGCGC............................................................................................... 21 0 1 1.00 1 1 0 0 0
..................................................GGGATGGGTCGAGTGCGCG.............................................................................................. 19 0 1 1.00 1 1 0 0 0
.....................................................ATGGGTCGAGTGCGCGGTC........................................................................................... 19 0 1 1.00 1 0 1 0 0
................................................................................................CGCACTCGGCTCATCCCTACC.............................................. 21 0 1 1.00 1 0 0 1 0
.................................................AGGGATGGGTCGAGCGCGCGGT............................................................................................ 22 1 1 1.00 1 0 1 0 0
....................................................GATGGGTCGAGTGCGCGGTCTCC........................................................................................ 23 0 1 1.00 1 1 0 0 0
.........................................................................................TCGGGCGCGCACTCGGCTC....................................................... 19 0 1 1.00 1 0 0 1 0
..................................................GGGATGTGTCGAGTGCGCGGTCT.......................................................................................... 23 1 1 1.00 1 1 0 0 0
................................................TAGGGATGGGTCGAGTGCGCGGTCT.......................................................................................... 25 0 1 1.00 1 1 0 0 0
................................................................................................CGCACTCGGCTCATCCCTACCA............................................. 22 0 1 1.00 1 0 0 1 0
................................................TAGGGATGGGTCGAGTGCGCGGCCA.......................................................................................... 25 2 1 1.00 1 0 0 0 1
..............................................CGTAGGGATGGCTCTAGCGC................................................................................................. 20 3 1 1.00 1 0 1 0 0
................................................TAGGGATGGGTCGAGTGCGCGGTC........................................................................................... 24 0 1 1.00 1 0 0 1 0
..................................................GGGATGGGTCGAGTGCGCGGTCTCCC....................................................................................... 26 1 1 1.00 1 1 0 0 0
....................................................GATGGGTCGAGTGCGCGGTC........................................................................................... 20 0 1 1.00 1 1 0 0 0
........................................................................................TTCGGGCGCGCACTCGGCTCATCC................................................... 24 0 1 1.00 1 0 0 1 0
...................................................GGATGGGTCGAGTGCGCGG............................................................................................. 19 0 1 1.00 1 1 0 0 0
...............................................GTAGGGATGGGTCGAGTGCG................................................................................................ 20 0 1 1.00 1 1 0 0 0
.................................................GGGGATGGGTCGAGTGCGCGGTC........................................................................................... 23 1 1 1.00 1 1 0 0 0
.................................................AGGGATGGGTCGAGCGCGCGGTCTC......................................................................................... 25 1 1 1.00 1 1 0 0 0
.............................................................................................GCGCGCACTCGGCTCATCC................................................... 19 0 1 1.00 1 0 1 0 0
...................................................GGATGGGTCGAGTGCGCGGTCTC......................................................................................... 23 0 1 1.00 1 1 0 0 0
.......................................................GGGTCGAGTGCGCGGTCTCC........................................................................................ 20 0 1 1.00 1 0 0 1 0
.............................................GCGTAGGGATGGGTCGAGTG.................................................................................................. 20 0 1 1.00 1 1 0 0 0
..............................................................................................CGCGCACTCGGCTCATCCCTACC.............................................. 23 0 1 1.00 1 0 1 0 0
..............................................................................................CGCGCCCTCCGCTCATCCCTCC............................................... 22 3 1 1.00 1 0 1 0 0
.................................................AGGGATGGGTCGAGTGCGCGGTCTCC........................................................................................ 26 0 1 1.00 1 1 0 0 0
......................................................TGGGTCGAGCGCGCGGTC........................................................................................... 18 1 1 1.00 1 0 0 1 0
...............................................................................................GCGCACTCGGCTCATCCCT................................................. 19 0 1 1.00 1 0 1 0 0
................................................TAGCGATGGGGCGAGCGCGCGG............................................................................................. 22 3 2 0.50 1 0 1 0 0
......................................................TGGGTAGAGTGCGTGGTCTT......................................................................................... 20 3 6 0.17 1 0 1 0 0
...........................................TCGCTTAGGGCTGAGTCGA..................................................................................................... 19 3 8 0.13 1 0 1 0 0
...............................................................................AAGGGGGTATAAGGGCGCG................................................................. 19 3 17 0.06 1 0 1 0 0

Anti-sense strand reads

CGTATACACACATACAAACATGTTCTTTTGTTCTTCTGGGGGTAGCGCATCCCTACCCAGCTCACGCGCCAGAGGTGGGTTCGCCCATAAGCCCGCGCGTGAGCCGAGTAGGGATGGTGTGGTGTGCTCACCCCCCGGCAACCCACGTACTTATAGGCCAAGG

****************************************............((((((((((((((((((((((.((...((((....))))....)).)))))))))))))))))))))).......*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droPer2 scaffold_0:6116197-6116359 - dpe_113 candidate-rescued GCAT-ATGT-------------------GT--G-------------TATGTTTGTACAAGAAAACA--------------------AGAAGA--------C---CCCC-----AT---CGCGTAGGGATGGGTCGAGTGCGCGGTCTCCACCCAA------------GCGGGTATTCGGGCGCGCACTCGGCTCATCCCTACCACA--CCACACGAGTGG-------GGGGCCG-TTGGGTGCATGAATATCCGGTTCC
dp5 2:14315836-14315994 + dps_115 confident GCAT-ATGT--------------------------------------ATGTTTGTACAAGAAAACA--------------------AGAAGA--------C---CCCC-----AT---CGCGTAGGGATGGGTCGAGTGCGCGGTCTCCACCCAA------------GCGGGTATTCGGGCGCGCACTCGGCTCATCCCTACCACA--CCACACGAGTGG-------GGGGCCG-TTGGGTGCATGAATATCCGGTTCC
droWil2 scf2_1100000004902:1079377-1079535 - TA-T-G-----------------------------------TAGAAATCACAAAAATCAA------------------------------------------------------A---CGCACAGGGAAGGGCCGAATGCGGATGTTCTGCCCAAAGCGTTAAAAGCACGGATATTCACCTGCGCAAGCGGCTCATCCCTAACACA--CTACACTACGTG--GATGTGA-GTAG-ATGTGGGCATGAATATCCGGTTCC
droMoj3 scaffold_6540:7087276-7087434 + dmo_176 candidate-rescued ACAC-AAG----------------------------------ACACACTGAGAAAACTTG----------------------CTGTAATACC--------G---TTAT-----CC---CTGCTGGGGATGGGGCGCATGTGCATGGTCTGCACTT------------GCGGTTATTCGCATGCACAAGCCCCCCATCCCCA-CACA--CGATACA-CGTGAAGGC-------GA-CTGGAAGTGGGAATAACCGGTTCC
droGri2 scaffold_15074:6156153-6156322 - ACAA-ACAC-----ACAC-----------------------------ACACAAATACGCACACA--CAACTTGTTG---------TAATGCCATCTA---T---G-AC-----CG---TTGCCAGGGATGGGATGAATGCGCATGGTCTGCGCTA------------GCGGATGTTCGCATGCGCAAGCGTTCCATCCCTAATACA--CA---C---GCGAGG-------GCGG-CTGTGGATGCGAATATCCGGTTCC
droAna3 scaffold_13340:7750310-7750469 - ACAC-A--------------------------------------------------CACG------AAGCGGATCGA----------ATCGCGACTAGG-------AT------G---CCTCCATCGGTGGGTCGAGTGCGAATCTCCCGCGCCT------------GCGGATATTCGCCTGCGCACTCGGCCCATCCCTGGTACA--CGACACTGCGTGGCGGC-CGGTCCAG-CTGGGTGTGCGAATATCCAGATCC
droBip1 scf7180000396708:1098938-1099106 + TA-T-G-----------------------------------T---------ACACACACG------AAACGGAGCGA----------ATCGCGACTAGAAT---G-GT-----TA---CCACCTTGGGTGGGTCGAGTGCGAATCTCCCGCGCCT------------GCGGATATTCGCCTGCGCACTCGGCCCATCCCTGGTACA--CGACACTGCGTGGCGGC-CGGCCCAG-CTGGGTGTGCGAATATCCGGATTC
droKik1 scf7180000302778:201803-201965 + GTGA-ATGA-----------------------------------TT-------------------------------------GGCAGTTAG--------TTGCCATCATGGCCGGAGGGGCCAGGAAAGAGTCAAGTGCGGACCCCCCGCCCCA------------GCGGTTATCCGTCTGCGCACTTGGCCCGTTCCTGGCACA--CAACACTAAGCGACGACGCGGCGCGA-CTGAGTGCGGGGATATCCGGAGCC
droFic1 scf7180000453800:1989025-1989200 + TA-T-G-----------------------------------T---------GAACACACAGTAACA---CGAAGGACACCGGGA-CAGCTAA-T------G---GATT-----GA---GGGCCAGGGAAGGACCGAGTGCGGATCCCCCGCCCAA------------GCGACTAATCGCCTCCGCACTTCGTTCATCCCTGGCACA--CTACACGAAGCGACGACGTGGTCCGG-TTGAGTGCGGGATTAGCCGGATCC
droEle1 scf7180000491008:107068-107227 + GCCA-ACTA------------------CACA---------------CACACACACACACG-----------AAGC---------------CA--------G---GGAT-----GA---GGGCCAGGGAAGGGTCGAGTGCGGATCCCCCGCCCCA------------GCGACTATGCGCCTGCGCACTCGGCCCATCTCTGGCACA--CTACACG-AGCGACGACGCGGCCCAG-TTGGGTGCGGGAATAGCCGG----
droRho1 scf7180000779169:92889-93046 - ACAT-ATAC-----------------------------------AC---------GCCAC------AAACGATGT---------------GA--------G---GGAT-----GG---AGGCCAGGGCGGGGTCGAGTGCGGATCCCCCGCCCAA------------GCGACTATTCGCCTGCGCACTCGGCTCATCCCTGGCACA--CTACACAAAGTGACGACGTGGTCCAG-TTGGGTGCGGGAATAGCCGGATC-
droBia1 scf7180000302136:149168-149328 + ACAC-C-----------------------------------------ACACCAGTACCAG----------------------GA-CAGTTGA-G------G---AACT-----GA---GGGCCAGGGAAGGGTCGAGTGCGGATCCCCCGCCTCA------------GCGGCTATTCGCCTGCGCACTCGGCCCATCCCTGGCACA--CTACACGAAGCGACGACGCGGTCCAG-CTGGGTGCGGGAATAGCCGGATCC
droTak1 scf7180000415183:24928-25114 - ACACTATACACTAGAC-------------------------------ACCATAGTACCAG------AAACAGAGTGG----------AGGATCCTGGGGAT---C-CT-----GG---GGGCCAGGGAAGGGTCGAGTGCGGATACCCCGCCTCA------------GCGGCTATACGCCTGCGCACTCGGTTCATCCCTGGCACACACTACACGAAGCGACGACGCGGTCCAG-TAGGGTGCGGGAATAGCCGGATTC
droEug1 scf7180000409798:584721-584914 - GCCA-C---ACC--ACACTACAAGGTAATA--GTATGCTATTA-CTAGTGCCCGTACCAG----------------------GAACAGTTGA--------G---GATC-----GA---CGGTCAGGGAAGGATCGAGTGCGGATCCCTTGCCCTA------------GCGGCTATTCGCCTGCGCACTTGGTCCATCCCTGGCACA--CTACACAAAGTGACGACGTGGCCCAG-TTGGGTGCGAGAATAGCCGGATCC
dm3 chr3R:19809175-19809341 + dme-mir-9381 Known_mirbase GTAT-T-----------------------------------TATATAGTGCTAGTACCAG----------------------GAGCAGTTGA--------G---TATC-----GC---CGGCCAGGGAAGGGTCGAGTGCGGATCCCTTGCCCCA------------GCGGCTATTCGCCTGCGCACTCGGTCCATCCCTGGCTCA--CTACACGAAGCGACGGCGTGGCCCAG-TTGGGTGCGGGAATAGCCGGATCC
droSim2 3r:19346292-19346458 + dsi_145 candidate-rescued GTAT-T-----------------------------------TATGTAGTGCTAGTACCAG----------------------GAGCAGTTGA--------G---TATC-----GC---CGGCCAGGGAAGGGTCGAATGCGGATCCCTTGCCCCA------------GCGGCTATTCGCCTGCGCACTCAACCCATCCCTGGCACA--CTACACGAAGCGACGGCGTGGCCCAG-TTGGGTGCGGGAATAGCCGGATCC
droSec2 scaffold_0:20150757-20150924 + dse_120 confident GTAT-T-----------------------------------TATGTAGTGCCAGTACCAG----------------------GAGCAGTTGA--------G---TATC-----GC---CGGCCAGGGAAGGGTCGAGTGCGGATCCCTTGCCCCA------------GCGGCTATTCGCCTGCGCACTCGGCCCATCCCTGGCACA--CTACACGAAGCGACGGCGTGGCCCAGTTTGGGTGCGGGAATAGCCGGATCC
droYak3 3R:26692527-26692722 - dya_181 candidate GCCA-C---ATG--GTACTACCAACTATTTATGTATG-TATTATGTAGTGCTAGTACCAG----------------------GAGCAGTTGA--------G---CATC-----GC---GGGCCAGGGAAGGGTCGAGTGCGGATCCCTTGCCCCA------------GCGGCTATTCGCCTGCGCACTCGGCCCATCCCTGGCACA--CTACACAAAGCGACGGCGTTGCCCAG-TTGGGTGCGGGAATAGCCGGATCC
droEre2 scaffold_4820:8247902-8248076 - der_77 confident ACAA-CTA-------------------TTTATG--------TATGTAGTGCTAGTACCAG----------------------GAGCAGTTGA--------G---TATC-----GC---GGGCCAGGGAAGGGTCGAGTGCGGATCCCTTGCCCCA------------GCGGCTATTCGCCTGCGCACTCGGCCCATCCCTGGCACA--CTACACCAAGCGACGACGTGACCCAG-CTGGGTGCGGGAATAGCCGGATCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
GCAT-ATGT-------------------GT--G-------------TATGTTTGTACAAGAAAACA--------------------AGAAGA--------C---CCCC-----AT---CGCGTAGGGATGGGTCGAGTGCGCGGTCTCCACCCAA------------GCGGGTATTCGGGCGCGCACTCGGCTCATCCCTACCACA--CCACACGAGTGG-------GGGGCCG-TTGGGTGCATGAATATCCGGTTCCSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
..........................................................................................................................TAGGGATGGGTCGAGTGCGCGGT..................................................................................................................23110.0010000343
............................................................................................................................GGGATGGGTCGAGTGCGCGGTC.................................................................................................................22110.00100000010
...........................................................................................................................AGGGATGGGTCGAGTGCGCGGT..................................................................................................................22110.0010010090
..........................................................................................................................TAGGGATGGGTCGAGTGCGCGG...................................................................................................................2216.006000240
............................................................................................................................GGGATGGGTCGAGTGCGCGGTCTC...............................................................................................................2414.004000004
...........................................................................................................................AGGGATGGGTCGAGTGCGCGGTCTC...............................................................................................................2514.004000022
.............................................................................................................................GGATGGGTCGAGTGCGCG....................................................................................................................1813.003000003
........................................................................................................................CGTAGGGATGGGTCGAGTGC.......................................................................................................................2013.003000030
..........................................................................................................................TAGGGATGGGTCGAGTGCGC.....................................................................................................................2012.002010010
............................................................................................................................GGGATGGGTCGAGTGCGCGGT..................................................................................................................2112.002000002
........................................................................................................................CGTAGGGATGGGTCGAGTGCGCGGTC.................................................................................................................2612.002000002
...........................................................................................................................AGGGATGGGTCGAGTGCGCGGTC.................................................................................................................2312.002000002
..........................................................................................................................TAGGGATGGGTCGAGTGCGCGGC..................................................................................................................2312.002000020
............................................................................................................................GGGATGGGTCGAGTGCGCGGTCT................................................................................................................2312.002000002
............................................................................................................................GGGATGGGTCGAGTGCGC.....................................................................................................................1812.002000002
............................................................................................................................GGGATGGGTCGAGTGCGCGGTCTCC..............................................................................................................2512.002000002
...........................................................................................................................AGGGATGGGTCGAGTGCGCGT...................................................................................................................2111.001000001
.....................................................................................................................................................................................GCGCACTCGGCTCATCCCTACC........................................................2211.001010000
....................................................................................................................................................................................CGCGCACTCGGCTCATCCCTACCA.......................................................2411.001010000
....................................................................................................................................................................................CGCGCACTCGGCTCATCCCTAC.........................................................2211.001000010
...........................................................................................................................AGGGATGGGTCGAGTGCGC.....................................................................................................................1911.001000010
.........................................................................................................................GTAGGGATGGGTCGAGTGCGC.....................................................................................................................2111.001000001
............................................................................................................................GGGATGGGTCGAGTGCGCG....................................................................................................................1911.001000001
...............................................................................................................................ATGGGTCGAGTGCGCGGTC.................................................................................................................1911.001000010
......................................................................................................................................................................................CGCACTCGGCTCATCCCTACC........................................................2111.001010000
..............................................................................................................................GATGGGTCGAGTGCGCGGTCTCC..............................................................................................................2311.001000001
...............................................................................................................................................................................TCGGGCGCGCACTCGGCTC.................................................................1911.001010000
..........................................................................................................................TAGGGATGGGTCGAGTGCGCGGTCT................................................................................................................2511.001000001
......................................................................................................................................................................................CGCACTCGGCTCATCCCTACCA.......................................................2211.001010000
..........................................................................................................................TAGGGATGGGTCGAGTGCGCGGTC.................................................................................................................2411.001010000
............................................................................................................................GGGATGGGTCGAGTGCGCGGTCTCCC.............................................................................................................2611.001000001
..............................................................................................................................GATGGGTCGAGTGCGCGGTC.................................................................................................................2011.001000001
..............................................................................................................................................................................TTCGGGCGCGCACTCGGCTCATCC.............................................................2411.001010000
.............................................................................................................................GGATGGGTCGAGTGCGCGG...................................................................................................................1911.001000001
.........................................................................................................................GTAGGGATGGGTCGAGTGCG......................................................................................................................2011.001000001
...................................................................................................................................................................................GCGCGCACTCGGCTCATCC.............................................................1911.001000010
.............................................................................................................................GGATGGGTCGAGTGCGCGGTCTC...............................................................................................................2311.001000001
.................................................................................................................................GGGTCGAGTGCGCGGTCTCC..............................................................................................................2011.001010000
.......................................................................................................................GCGTAGGGATGGGTCGAGTG........................................................................................................................2011.001000001
....................................................................................................................................................................................CGCGCACTCGGCTCATCCCTACC........................................................2311.001000010
...........................................................................................................................AGGGATGGGTCGAGTGCGCGGTCTCC..............................................................................................................2611.001000001
.....................................................................................................................................................................................GCGCACTCGGCTCATCCCT...........................................................1911.001000010
dp5
GCAT-ATGT--------------------------------------ATGTTTGTACAAGAAAACA--------------------AGAAGA--------C---CCCC-----AT---CGCGTAGGGATGGGTCGAGTGCGCGGTCTCCACCCAA------------GCGGGTATTCGGGCGCGCACTCGGCTCATCCCTACCACA--CCACACGAGTGG-------GGGGCCG-TTGGGTGCATGAATATCCGGTTCCSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
..........................................................................................................................TAGGGATGGGTCGAGTGCGCGGT..................................................................................................................2316.0060000032001
..........................................................................................................................TAGGGATGGGTCGAGTGCGCGG...................................................................................................................2215.0050200012000
....................................................................................................................................................................................CGCGCACTCGGCTCATCCCTACC........................................................2313.0030201000000
....................................................................................................................................................................................CGCGCACTCGGCTCATCCCTAC.........................................................2213.0030102000000
..........................................................................................................................TAGGGATGGGTCGAGTGCGCGGTCTC...............................................................................................................2612.0020200000000
..........................................................................................................................TAGGGATGGGTCGAGTGCGCGC...................................................................................................................2211.0010000010000
......................................................................................................................................................................................CGCACTCGGCTCATCCCTACC........................................................2111.0010010000000
.....................................................................................................................................................................................GCGCACTCGGCTCATCCCTACT........................................................2211.0010001000000
.....................................................................................................................................................................................GCGCACTCGGCTCATCCCT...........................................................1911.0010100000000
...........................................................................................................................................................................................................................G-------GGGGCCG-TTGGGTGCATGAATATCC......2611.0010001000000
.....................................................................................................................................................................................GCGCACTCGGCTCATCCCTACC........................................................2211.0010010000000
......................................................................................................................................................................................CGCACTCGGCTCATCCCTAC.........................................................2011.0010000010000
...........................................................................................................................AGGGATGGGTCGAGTGCGCG....................................................................................................................2011.0010000010000
..........................................................................................................................TAGGGATGGGTCGAGTGCG......................................................................................................................1911.0010100000000
...................................................................................................................................................................................GCGCGCACTCGGCTCATCCCTACC........................................................2411.0010010000000
..........................................................................................................................TAGGGATGGGTCGAGTGCGCGGTCT................................................................................................................2511.0010000001000
...........................................................................................................................AGGGATGGGTCGAGTGCGT.....................................................................................................................1911.0010000001000
..........................................................................................................................TAGGGATGGGTCGAGTGCGCGGTCTCC..............................................................................................................2711.0010100000000
............................................................................................................................GGGATGGGTCGAGTGCGCGGTCT................................................................................................................2311.0010100000000
..........................................................................................................................TAGGGATGGGTCGAGTGCGCGGTC.................................................................................................................2411.0011000000000
...........................................................................................................................AGGGATGGGTCGAGTGCGCGGA..................................................................................................................2211.0010000001000
...........................................................................................................................AGGGATGGGTCGAGTGCGCGGTC.................................................................................................................2311.0010000001000
...........................................................................................................................AGGGATGGGTCGAGTGCGC.....................................................................................................................1911.0010000010000
............................................................................................................................GGGATGGGTCGAGTGCGCGGT..................................................................................................................2111.0010001000000
.........................................................................................................................GTAGGGATGGGTCGAGTGCGC.....................................................................................................................2111.0010001000000
.......................................................................................................................GCGTAGGGATGGGTCGTT..........................................................................................................................1830.3310100000000
droWil2
TA-T-G-----------------------------------TAGAAATCACAAAAATCAA------------------------------------------------------A---CGCACAGGGAAGGGCCGAATGCGGATGTTCTGCCCAAAGCGTTAAAAGCACGGATATTCACCTGCGCAAGCGGCTCATCCCTAACACA--CTACACTACGTG--GATGTGA-GTAG-ATGTGGGCATGAATATCCGGTTCCSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
..........................................................................................................................................................................................................................TG--GATGTGA-GTAG-ATGTGGGCA...............2211.00100010
.........................................................................................................................ACAGGGAAGGGCCGAATGCGGA....................................................................................................................2211.00100001
droMoj3
ACAC-AAG----------------------------------ACACACTGAGAAAACTTG----------------------CTGTAATACC--------G---TTAT-----CC---CTGCTGGGGATGGGGCGCATGTGCATGGTCTGCACTT------------GCGGTTATTCGCATGCACAAGCCCCCCATCCCCA-CACA--CGATACA-CGTGAAGGC-------GA-CTGGAAGTGGGAATAACCGGTTCCSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
..........................................................................................................................TGGGGATGGGGCGCATGTGC.....................................................................................................................2014.004002011
...........................................................................................................................GGGGATGGGGCGCATGTGCATG..................................................................................................................2213.003101010
..........................................................................................................................TGGGGATGGGGCGCATGTGCA....................................................................................................................2113.003001200
...........................................................................................................................GGGGATGGGGCGCATGTGCA....................................................................................................................2012.002010100
..........................................................................................................................TGGGGATGGGGCGCATGTGTT....................................................................................................................2111.001000100
.........................................................................................................................CTGGGGATGGGGCGCATGTG......................................................................................................................2011.001001000
..........................................................................................................................TGGGGATGGGGCGCATGTGCAT...................................................................................................................2211.001000010
...........................................................................................................................GGGGATGGGGCGCATGTGCAA...................................................................................................................2111.001010000
.........................................................................................................................CTGGGGATGGGGCGCATGTGC.....................................................................................................................2111.001000001
.................................................................................................................................GGGGCGCATGTGCATGGTCTG.............................................................................................................2111.001100000
droGri2
ACAA-ACAC-----ACAC-----------------------------ACACAAATACGCACACA--CAACTTGTTG---------TAATGCCATCTA---T---G-AC-----CG---TTGCCAGGGATGGGATGAATGCGCATGGTCTGCGCTA------------GCGGATGTTCGCATGCGCAAGCGTTCCATCCCTAATACA--CA---C---GCGAGG-------GCGG-CTGTGGATGCGAATATCCGGTTCCSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
...........................................................................................................................AGGGATGGGATGAATGCGCA....................................................................................................................2011.00101
....................................................................................................................................................................................TGCGCAAGCGTTCCATCCCTA..........................................................2111.00110
droAna3
ACAC-A--------------------------------------------------CACG------AAGCGGATCGA----------ATCGCGACTAGG-------AT------G---CCTCCATCGGTGGGTCGAGTGCGAATCTCCCGCGCCT------------GCGGATATTCGCCTGCGCACTCGGCCCATCCCTGGTACA--CGACACTGCGTGGCGGC-CGGTCCAG-CTGGGTGTGCGAATATCCAGATCCSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
..................................................................................................................G---CCTCCATCGGTGGGTCGATGC........................................................................................................................2221.002000002
.........................................................................................................................................................................................................................................G-CTGGGTGTGCGAATATCC......1911.001000100
droBip1
TA-T-G-----------------------------------T---------ACACACACG------AAACGGAGCGA----------ATCGCGACTAGAAT---G-GT-----TA---CCACCTTGGGTGGGTCGAGTGCGAATCTCCCGCGCCT------------GCGGATATTCGCCTGCGCACTCGGCCCATCCCTGGTACA--CGACACTGCGTGGCGGC-CGGCCCAG-CTGGGTGTGCGAATATCCGGATTCSizeHit CountTotal NormTotal
No Reads
droKik1
GTGA-ATGA-----------------------------------TT-------------------------------------GGCAGTTAG--------TTGCCATCATGGCCGGAGGGGCCAGGAAAGAGTCAAGTGCGGACCCCCCGCCCCA------------GCGGTTATCCGTCTGCGCACTTGGCCCGTTCCTGGCACA--CAACACTAAGCGACGACGCGGCGCGA-CTGAGTGCGGGGATATCCGGAGCCSizeHit CountTotal NormTotal
No Reads
droFic1
TA-T-G-----------------------------------T---------GAACACACAGTAACA---CGAAGGACACCGGGA-CAGCTAA-T------G---GATT-----GA---GGGCCAGGGAAGGACCGAGTGCGGATCCCCCGCCCAA------------GCGACTAATCGCCTCCGCACTTCGTTCATCCCTGGCACA--CTACACGAAGCGACGACGTGGTCCGG-TTGAGTGCGGGATTAGCCGGATCCSizeHit CountTotal NormTotal
No Reads
droEle1
GCCA-ACTA------------------CACA---------------CACACACACACACG-----------AAGC---------------CA--------G---GGAT-----GA---GGGCCAGGGAAGGGTCGAGTGCGGATCCCCCGCCCCA------------GCGACTATGCGCCTGCGCACTCGGCCCATCTCTGGCACA--CTACACG-AGCGACGACGCGGCCCAG-TTGGGTGCGGGAATAGCCGG----SizeHit CountTotal NormTotal
No Reads
droRho1
ACAT-ATAC-----------------------------------AC---------GCCAC------AAACGATGT---------------GA--------G---GGAT-----GG---AGGCCAGGGCGGGGTCGAGTGCGGATCCCCCGCCCAA------------GCGACTATTCGCCTGCGCACTCGGCTCATCCCTGGCACA--CTACACAAAGTGACGACGTGGTCCAG-TTGGGTGCGGGAATAGCCGGATC-SizeHit CountTotal NormTotal
No Reads
droBia1
ACAC-C-----------------------------------------ACACCAGTACCAG----------------------GA-CAGTTGA-G------G---AACT-----GA---GGGCCAGGGAAGGGTCGAGTGCGGATCCCCCGCCTCA------------GCGGCTATTCGCCTGCGCACTCGGCCCATCCCTGGCACA--CTACACGAAGCGACGACGCGGTCCAG-CTGGGTGCGGGAATAGCCGGATCCSizeHit CountTotal NormTotal
No Reads
droTak1
ACACTATACACTAGAC-------------------------------ACCATAGTACCAG------AAACAGAGTGG----------AGGATCCTGGGGAT---C-CT-----GG---GGGCCAGGGAAGGGTCGAGTGCGGATACCCCGCCTCA------------GCGGCTATACGCCTGCGCACTCGGTTCATCCCTGGCACACACTACACGAAGCGACGACGCGGTCCAG-TAGGGTGCGGGAATAGCCGGATTCSizeHit CountTotal NormTotal
No Reads
droEug1
GCCA-C---ACC--ACACTACAAGGTAATA--GTATGCTATTA-CTAGTGCCCGTACCAG----------------------GAACAGTTGA--------G---GATC-----GA---CGGTCAGGGAAGGATCGAGTGCGGATCCCTTGCCCTA------------GCGGCTATTCGCCTGCGCACTTGGTCCATCCCTGGCACA--CTACACAAAGTGACGACGTGGCCCAG-TTGGGTGCGAGAATAGCCGGATCCSizeHit CountTotal NormTotal
No Reads
dm3
GTAT-T-----------------------------------TATATAGTGCTAGTACCAG----------------------GAGCAGTTGA--------G---TATC-----GC---CGGCCAGGGAAGGGTCGAGTGCGGATCCCTTGCCCCA------------GCGGCTATTCGCCTGCGCACTCGGTCCATCCCTGGCTCA--CTACACGAAGCGACGGCGTGGCCCAG-TTGGGTGCGGGAATAGCCGGATCCSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
........................................................................................................................GCCAGGGAAGGGTCGAGTGC.......................................................................................................................201122.001220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000100000002000000000000000000001000000020200013000000100310100000000011000828136148100000
.......................................................................................................................GGCCAGGGAAGGGTCGAGTGC.......................................................................................................................21140.00400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003010000010000000000000000000000000000103100100000000011000000000100000002120003000000
......................................................................................................................CGGCCAGGGAAGGGTCGAGTGC.......................................................................................................................22139.00390000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000004000000000100000000000001000000000000001101100000000000100100001012011110101401000000000
........................................................................................................................GCCAGGGAAGGGTCGAGTGCG......................................................................................................................21121.0021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000001010000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000100000000000000000000000001000000000000000000000000000010010100000000100000000000000000000810001000000
....................................................................................................................................................................................TGCGCACTCGGTCCATCCCTGG.........................................................22118.0018000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000002000000000000000000000000000000000000001000000000000000000000010020000000001100000000000000000000000000000000090000000000000000000000000000
.......................................................................................................................GGCCAGGGAAGGGTCGAGTGCGT.....................................................................................................................23116.00160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000000000000000100000000000
.......................................................................................................................GGCCAGGGAAGGGTCGAGTGCG......................................................................................................................22116.0016000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000122010101000000000000000000000000001400000000000
........................................................................................................................................................................................CACTCGGTCCATCCCTGGCTC......................................................21111.0011000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000120001000000000000001000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000110000000000000000000000000000000100000000000
........................................................................................................................................................................................CACTCGGTCCATCCCTGGCTCA--...................................................22110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000300100000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000100100000000
.......................................................................................................................GGCCAGGGAAGGGTCGAGTG........................................................................................................................2017.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001110000000000000000000000000000000400000000000
...........................................................................................................................AGGGAAGGGTCGAGTGCGGATC..................................................................................................................2216.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000010000100000000000
.........................................................................................................................................................................................................................................G-TTGGGTGCGGGAATAGC.......1815.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000
.......................................................................................................................................................................................GCACTCGGTCCATCCCTGGC........................................................2014.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................GCCAGGGAAGGGTCGAGTG........................................................................................................................1914.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000010000000000000000
......................................................................................................................CGGCCAGGGAAGGGTCGAGTGCG......................................................................................................................2313.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000010000000000000000000000000000000000000000
......................................................................................................................CGGCCAGGGAAGGGTCGAGTG........................................................................................................................2113.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000001000000000000010000000000000000
......................................................................................................................................................................................CGCACTCGGTCCATCCCTGGCTC......................................................2313.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................GCCAGGGAAGGGTCGAGT.........................................................................................................................1813.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000200000000000
........................................................................................................................................................................................CACTCGGTCCATCCCTGGCT.......................................................2013.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000100000000000
..........................................................................................................................................................................................CTCGGTCCATCCCTGGCTCA--...................................................2012.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................TGCGCACTCGGTCCATCCCTGT.........................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
.....T-----------------------------------TATATAGTGCTAGTACCAG----------------------GAGCAGT..........................................................................................................................................................................2712.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000010000000
..........................................................................................................................CAGGGAAGGGTCGAGTGCG......................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
....................................................................................................................................................................................TGCGCACTCGGTCCATCCCTGGC........................................................2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................C---CGGCCAGGGAAGGGTCGAGTGC.......................................................................................................................2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
...........................................................................................................................AGGGAAGGGTCGAGTGCGGAT...................................................................................................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
.......................................................ACCAG----------------------GAGCAGTTGA--------G---TA.........................................................................................................................................................1812.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000
.......................................................................................................................GGCCAGGGAAGGGTCGAGT.........................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000
...........................................................................................................................................................................................................................................TTGGGTGCGGGAATC.........1591.44130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000211000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................GCCAGGGAAGGGTCGAGTGCGA.....................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
..........................................................................................................................................GCGGATCCCTTGCCCCA------------GCGC........................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
....................................................................................................................................................................................TGCGCACTCGGTCCATCCCT...........................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................CACTCGGTCCATCCCTGGCTTT--...................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................CCTGCGCACTCGGTCCATCCCT...........................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
GTAT-T-----------------------------------TATATAGTGCTAGTACCA........................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................GGTCGAGTGCGGATCCCTTGC............................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
...................................................................................................................................................................................CTGCGCACTCGGTCCATCCC............................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................CAGGGAAGGGTCGAGTGCGGATCCCTT..............................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TTGGGTGCGGGAATAGCC......1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.............................................TAGTGCTAGTACCAG----------------------GAGCAGTTGA--------...............................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................C---CGGCCAGGGAAGGGTCGAGTG........................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................TATTCGCCTGCGCACTCGGTCCATCCC............................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................GCCAGGGAAGGGTCGAGTGT.......................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
...............................................................................................................................................................................................................................GCGTGGCCCAG-TTGGGTGCGG..............2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................CAGGGAAGGGTCGAGTGC.......................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.....................................................................................................................................................................................GCGCACTCGGTCCATCCCTGGCT.......................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................GCCCAG-TTGGGTGCGGGAAT..........2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................CAGGGAAGGGTCGAGTGCGGATCCCT...............................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................GTGGCCCAG-TTGGGTGCGGGAAT..........2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................ACTCGGTCCATCCCTGGCTCA--C..................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................GGCCAGGGAAGGGTCGAGTGT.......................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................GTTGA--------G---TATC-----GC---CGGCCAGGGAAGGG...............................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................AG-TTGGGTGCGGGAATAGCCGGATC.2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
....................................................................................................................................................................................TGCGCACTCGGTCCATCCC............................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................CGCACTCGGTCCATCCCTGG.........................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................TCCCTGGCTCA--CTACACGAAGCGACGGC..................................2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................GCACTCGGTCCATCCCTGGCTC......................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................CTAGTACCAG----------------------GAGCAGTTGA--------G---...........................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................GTGCTAGTACCAG----------------------GAGCAGTTG........................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
........................................................................................................................................................................................CACTCGGTCCATCCCTGG.........................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................AGCGACGGCGTGGCCCAG-TTGGG...................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
......................................................TACCAG----------------------GAGCAGTTGA--------G---TATC-----..................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................TACACGAAGCGACGGCGTGGCCCAG-T.......................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
............................................ATAGTGCTAGTACCAG----------------------GAGCAGT..........................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
.......................................................................................................................GGCCAGGGAAGGGTCGAGTGCGGATC..................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................CACTCGGTCCATCCCTGGCTA......................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................AGCAGTTGA--------G---TATC-----GC---CGG..........................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................CCAGGGAAGGGTCGAGTG........................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.........................................................................................................................................................................................................GCTCA--CTACACGAAGCGACGGCGTGG..............................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
..................................................CTAGTACCAG----------------------GAGCAGTTGA--------G---T..........................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.................................................................................................................GC---CGGCCAGGGAAGGGTCGAGTG........................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.............................................................................................................................................................................................................A--CTACACGAAGCGACGGC..................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GTAT-T-----------------------------------TATATAGTGCTAGT............................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................AGGGAAGGGTCGAGTGCGGATCC.................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
........................................................................................................................................................................................CACTCGGTCCATCCCTGGCTCT--...................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................GGCCAGGGAAGGGTCGAGTGCGGAT...................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................GCCAGGGAAGGGTCGAGTGCGGATC..................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.........................................................................................................................................................................................................................GCGACGGCGTGGCCCAG-TTGGGTT.................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..................................................................................................................C---CGGCCAGGGAAGGGTCGAGTGCG......................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................ACTCGGTCCATCCCTGGCTCA--...................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................CCTGCGCACTCGGTCCATCC.............................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................TGCGGATCCCTTGCCCCA------------GCGGC.......................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
GTAT-T-----------------------------------TATATAGTGCTAGTACCAG----------------------.................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................CACTCGGTCCATCCCTGGCTT......................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GTAT-T-----------------------------------TATGTAGTGCTAGTACCAG----------------------GAGCAGTTGA--------G---TATC-----GC---CGGCCAGGGAAGGGTCGAATGCGGATCCCTTGCCCCA------------GCGGCTATTCGCCTGCGCACTCAACCCATCCCTGGCACA--CTACACGAAGCGACGGCGTGGCCCAG-TTGGGTGCGGGAATAGCCGGATCCSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
...................................................................................AGCAGTTGA--------G---TATC-----GC---CGGCCA.......................................................................................................................................2214.00400400000000000000
........................................................................................................................................................................................CACTCAACCCATCCCTGGCAC......................................................2114.00440000000000000000
....................................................................................................................................................................................TGCGCACTCAACCCATCCCTGG.........................................................2212.00210000100000000000
........................................................................................................................................................................................CACTCAACCCATCCCTGGCACA--...................................................2212.00220000000000000000
.........................................................................................................................................TGCGGATCCCTTGCCCCA------------GCGGCTAT....................................................................................2611.00100000000000001000
..............................................................................................................................GAAGGGTCGAATGCGGAT...................................................................................................................1811.00100100000000000000
......................................................................................................................................................................................CGCACTCAACCCATCCCTGGCT.......................................................2211.00110000000000000000
.........................................................................................................................................................................................ACTCAACCCATCCCTGGCACT--A..................................................2211.00110000000000000000
..................................................................................GAGCAGTTGA--------G---TATC-----GC---CGG..........................................................................................................................................2011.00110000000000000000
.......................................................................................................................GGCCAGGGAAGGGTCGAATGCGGATC..................................................................................................................2611.00110000000000000000
.........................................................................................................................................................................................ACTCAACCCATCCCTGGCACA--C..................................................2211.00100000100000000000
..........................................................................................................................CAGGGAAGGGTCGAATGCGGATC..................................................................................................................2311.00110000000000000000
.....T-----------------------------------TATGTAGTGCTAGTACCAG----------------------GAGCAGT..........................................................................................................................................................................2711.00100010000000000000
............................................................................................................................................................................................................................ACGGCGTGGCCCAG-TTGGGTG.................2111.00110000000000000000
............................................GTAGTGCTAGTACCAG----------------------GA...............................................................................................................................................................................1811.00100100000000000000
........................................................................................................................................................................................CACTCAACCCATCCCTGGCACA--C..................................................2311.00100000100000000000
.........................................................................................................................................................................................ACTCAACCCATCCCTGGCACA--...................................................2111.00110000000000000000
........................................................................................................................................................................................CACTCAACCCATCCCTGGCACG--...................................................2211.00110000000000000000
droSec2
GTAT-T-----------------------------------TATGTAGTGCCAGTACCAG----------------------GAGCAGTTGA--------G---TATC-----GC---CGGCCAGGGAAGGGTCGAGTGCGGATCCCTTGCCCCA------------GCGGCTATTCGCCTGCGCACTCGGCCCATCCCTGGCACA--CTACACGAAGCGACGGCGTGGCCCAGTTTGGGTGCGGGAATAGCCGGATCCSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
........................................................................................................................GCCAGGGAAGGGTCGAGTGC.......................................................................................................................20134.003412031
......................................................................................................................CGGCCAGGGAAGGGTCGAGTGC.......................................................................................................................22114.001400113
.......................................................................................................................GGCCAGGGAAGGGTCGAGTGCG......................................................................................................................2218.0080017
........................................................................................................................................................................................CACTCGGCCCATCCCTGGCACA--...................................................2215.0051004
........................................................................................................................GCCAGGGAAGGGTCGAGTGCG......................................................................................................................2113.0030003
.......................................................................................................................GGCCAGGGAAGGGTCGAGTG........................................................................................................................2013.0030003
.......................................................................................................................GGCCAGGGAAGGGTCGAGTGC.......................................................................................................................2113.0030012
......................................................................................................................CGGCCAGGGAAGGGTCGAGTGCG......................................................................................................................2312.0020002
........................................................................................................................................................................................CACTCGGCCCATCCCTGGCAC......................................................2112.0020002
.......................................................................................................................GGCCAGGGAAGGGTCGAGTGCGA.....................................................................................................................2312.0020002
........................................................................................................................................................................................CACTCGGCCCATCCCTGGCACC--...................................................2212.0020002
..........................................................................................................................................................................................CTCGGCCCATCCCTGGCACA--...................................................2011.0010001
......................................................................................................................CGGCCAGGGAAGGGTCGAGTGCGC.....................................................................................................................2411.0010001
......................................................................................................................CGGCCAGGGAAGGGTCGAGTGTA......................................................................................................................2311.0010001
...........................................................................................................C-----GC---CGGCCAGGGAAGGGTCGAGTGCGG.....................................................................................................................2711.0010010
.......................................................................................GTTGA--------G---TATC-----GC---CGGCCAG......................................................................................................................................1911.0010010
........................................................................................................................GCCAGGGAAGGGTCGAGT.........................................................................................................................1811.0010001
........................................................................................................................GCCAGGGAAGGGTCGAGTG........................................................................................................................1911.0010001
........................................................................................................................................................................................CACTCGGCCCATCCCTGGCA.......................................................2011.0010001
droYak3
GCCA-C---ATG--GTACTACCAACTATTTATGTATG-TATTATGTAGTGCTAGTACCAG----------------------GAGCAGTTGA--------G---CATC-----GC---GGGCCAGGGAAGGGTCGAGTGCGGATCCCTTGCCCCA------------GCGGCTATTCGCCTGCGCACTCGGCCCATCCCTGGCACA--CTACACAAAGCGACGGCGTTGCCCAG-TTGGGTGCGGGAATAGCCGGATCCSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
....................................................................................................................................................................................TGCGCACTCGGCCCATCCCTGG.........................................................2217.00704300000000
...........................................................................................................................AGGGAAGGGTCGAGTGCGGATC..................................................................................................................2213.00320100000000
..........................................................................................................................CAGGGAAGGGTCGAGTGCGGAT...................................................................................................................2212.00210000100000
......................................................................................................................................................................................CGCACTCGGCCCATCCCTGGCAC......................................................2312.00200200000000
........................................................................................................................................................................................CACTCGGCCCATCCCTGGCACA--...................................................2212.00220000000000
........................................................................................................................................................................................CACTCGGCCCATCCCTGGCAC......................................................2112.00220000000000
..........................................................................................................................................................................................CTCGGCCCATCCCTGGCACA--CT.................................................2212.00220000000000
...........................................................................................................................AGGGAAGGGTCGAGTGCGGAC...................................................................................................................2111.00100100000000
.........................................................................................................................................................................................................GCACA--CTACACAAAGCGACGGC..................................2211.00110000000000
......................................................................................................................GGGCCAGGGAAGGGTCGAGTGC.......................................................................................................................2211.00100000010000
..........................................................................................................................................................................................CTCGGCCCATCCCTGGCACA--...................................................2011.00110000000000
.........................................................................................................................CCAGGGAAGGGTCGAGTGCGGATCC.................................................................................................................2511.00110000000000
........................................................................................................................GCCAGGGAAGGGTCGAGTGC.......................................................................................................................2011.00100010000000
..........................................................................................................................................................................................CTCGGCCCATCCCTGGCACA--CC.................................................2211.00110000000000
.........................................................................................................................CCAGGGAAGGGTCGAGTGCGGC....................................................................................................................2211.00100100000000
....................................................................................................................................................................................TGCGCACTCGGCCCATCCCTG..........................................................2111.00101000000000
......................................................................................................................GGGCCAGGGAAGGGTCGAGTG........................................................................................................................2111.00101000000000
........................................................................................................................GCCAGGGAAGGGTCGAGTG........................................................................................................................1911.00100000100000
.......................................................................................................................GGCCAGGGAAGGGTCGAGTG........................................................................................................................2011.00100000100000
.......................................................................................................................................................................................GCACTCGGCCCATCCCTGCAC.......................................................2130.33100010000000
droEre2
ACAA-CTA-------------------TTTATG--------TATGTAGTGCTAGTACCAG----------------------GAGCAGTTGA--------G---TATC-----GC---GGGCCAGGGAAGGGTCGAGTGCGGATCCCTTGCCCCA------------GCGGCTATTCGCCTGCGCACTCGGCCCATCCCTGGCACA--CTACACCAAGCGACGACGTGACCCAG-CTGGGTGCGGGAATAGCCGGATCCSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
........................................................................................................................GCCAGGGAAGGGTCGAGTGC.......................................................................................................................20142.004200203370
.......................................................................................................................GGCCAGGGAAGGGTCGAGTGCG......................................................................................................................2218.0080020150
.......................................................................................................................GGCCAGGGAAGGGTCGAGTGC.......................................................................................................................2115.0050000050
......................................................................................................................GGGCCAGGGAAGGGTCGAGTGC.......................................................................................................................2214.0040011020
........................................................................................................................GCCAGGGAAGGGTCGAGTGCG......................................................................................................................2113.0030000120
......................................................................................................................GGGCCAGGGAAGGGTCGAGTGCG......................................................................................................................2313.0030010020
....................................................................................................................................................................................TGCGCACTCGGCCCATCCCTGG.........................................................2213.0033000000
........................................................................................................................GCCAGGGAAGGGTCGAGTGCGG.....................................................................................................................2212.0020000200
.......................................................................................................................GGCCAGGGAAGGGTCGAGTG........................................................................................................................2012.0021000100
........................................................................................................................GCCAGGGAAGGGTCGAGTG........................................................................................................................1912.0020000020
........................................................................................................................................................................................CACTCGGCCCATCCCTGGCACA--...................................................2212.0020000020
.......A-------------------TTTATG--------TATGTAGTGCTAGT............................................................................................................................................................................................................2111.0010000100
.......................................................................................................................GGCCAGGGAAGGGTCGAGTGCGA.....................................................................................................................2311.0010000010
.....................................................................................................................................................................................GCGCACTCGGCCCATCCCTGG.........................................................2111.0011000000
............................TTATG--------TATGTAGTGCTAGT............................................................................................................................................................................................................1911.0010100000
......................................................................................................................GGGCCAGGGAAGGGTCGAGTGA.......................................................................................................................2211.0010000010
......................................................................................................................GGGCCAGGGAAGGGTCGAGTGT.......................................................................................................................2211.0010000100
...........................TTTATG--------TATGTAGTGCTAGT............................................................................................................................................................................................................2011.0010000100
....................................................................................................................................................................................TGCGCACTCGGCCCATCCCTGA.........................................................2211.0011000000
...........................................................................................................................................................................................TCGGCCCATCCCTGGCACA--CT.................................................2111.0011000000
..........................................................................................................................CAGGGAAGGGTCGAGTGCGGA....................................................................................................................2111.0010000010
......................................................................................................................GGGCCAGGGAAGGGTCGAGTGCT......................................................................................................................2311.0010000100
................................G--------TATGTAGTGCTAGTACCAG----------------------GAGC.............................................................................................................................................................................2411.0010100000

Generated: 10/20/2015 at 06:46 PM