dpe_1128

CDS [Dper\GL22730-cds]; exon [dper_GLEANR_4986:1]; exon [dper_GLEANR_4986:2]; CDS [Dper\GL22730-cds]; intron [Dper\GL22730-in]; Antisense to intron [Dper\GL22858-in]

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CCCGGAGCCTGGTCGCACCTGTCACAGACATGGATACTGTGCCGCCCACAGTGTGCCCATGGGCAGCAACAGCAGCGGCGGCAGCAAGACGCCCCACAGCAGCGTGATCTACGTGAGCAAGTCGTCGAGCGGCGCCGTCAGCACTACCGAGGCGGTCCAAGCGGTGTCGCACTTCGAGTCCCTGGCCCATCACCCAACACCCACACCACACCAGCTCCATCAGAAGCAGCACCAGCAGGATCTGGGCCAAATGGCTAGCCCCATGTTACCACCACCATCACCATCAGGCACATGGGGCGGCACAGGTGTACGCCCCGGGGAATCTGCCACACCATGC ****************************************************************************************************************..............((((((((((.......((((...))))....)))))))))).....****************************************************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M021 embryo	V042 embryo	V057 head	M042 female body
....................GTCACAGACATGGATACT...........................................................................................................................................................................................................................................................................................................	18	0	1	4.00	4	4	0	0	0
..........................................................................................................................................................GTCCAAGCGGTGTCGCACTTC..................................................................................................................................................................	21	0	1	3.00	3	3	0	0	0
....................GTCACAGACATGGATACG...........................................................................................................................................................................................................................................................................................................	18	1	1	1.00	1	1	0	0	0
..................................................................................................................GAGCAAGTCGTCGAGCGGCGCC.........................................................................................................................................................................................................	22	0	1	1.00	1	0	1	0	0
...................TGTCACAGACATTGTTACT...........................................................................................................................................................................................................................................................................................................	19	2	2	0.50	1	0	0	1	0
..................................................................................................................................................................................................................................................................................................GCTGGGGCGGCACAGTTGTA...........................	20	3	12	0.08	1	0	0	0	1
......................................................................................................................ATGTCATCGATCGGCGCCG........................................................................................................................................................................................................	19	3	17	0.06	1	0	0	1	0

GGGCCTCGGACCAGCGTGGACAGTGTCTGTACCTATGACACGGCGGGTGTCACACGGGTACCCGTCGTTGTCGTCGCCGCCGTCGTTCTGCGGGGTGTCGTCGCACTAGATGCACTCGTTCAGCAGCTCGCCGCGGCAGTCGTGATGGCTCCGCCAGGTTCGCCACAGCGTGAAGCTCAGGGACCGGGTAGTGGGTTGTGGGTGTGGTGTGGTCGAGGTAGTCTTCGTCGTGGTCGTCCTAGACCCGGTTTACCGATCGGGGTACAATGGTGGTGGTAGTGGTAGTCCGTGTACCCCGCCGTGTCCACATGCGGGGCCCCTTAGACGGTGTGGTACG ****************************************************************************************************************************************************************..............((((((((((.......((((...))))....)))))))))).....****************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V111 male body	V057 head	M042 female body	M021 embryo
................................................................................................................................................................................................................................................................ACGGGGTACAAGGGTGGTGGCAG..........................................................	23	3	1	2.00	2	2	0	0	0
...............................................................................................................................................................................................TGGGTTGTAGGTCTGGTGTGG.............................................................................................................................	21	2	1	1.00	1	0	1	0	0
...................................................................................................................................................................................................................................................................GGGTACAAGGGTGGTGGCAG..........................................................	20	2	1	1.00	1	1	0	0	0
.....................................................................................................................................................................................................................................................................GTACAAGGGTGGTGGCAG..........................................................	18	2	2	0.50	1	0	1	0	0
...........................................................................GCTGCCGTCTTTCTGAGGGGTG................................................................................................................................................................................................................................................	22	3	2	0.50	1	0	1	0	0
...............................................................................................................................................................................................TGGGTTGTAGGTCTGCTGTG..............................................................................................................................	20	3	12	0.50	6	5	0	1	0
..................................................................................................................................................................................................................................................................GGGGTACAAGGGTGGTGG.............................................................	18	1	2	0.50	1	1	0	0	0
.............................................................................CGCCGTCGTTATGCGGGTT.................................................................................................................................................................................................................................................	19	2	3	0.33	1	0	1	0	0
....................................................................................................................................................................................................................................................................................TAGTGGTTGTCCGTGTTGCCC........................................	21	3	5	0.20	1	1	0	0	0
.....................................................................................................................................................................................................................................GTGGTCGTCCTAGACTTGG.........................................................................................	19	2	5	0.20	1	0	0	1	0
...............................................................................................................................................................................................TGGGTTGTAGGTCGGGTGTGG.............................................................................................................................	21	3	13	0.08	1	0	1	0	0
.........................TCTGTAGCTAAGGCACGGCG....................................................................................................................................................................................................................................................................................................	20	3	14	0.07	1	0	1	0	0
................................................................................................................................................................................................................................CCGCTGTGGTCGTCCTAGAC.............................................................................................	20	3	15	0.07	1	0	0	1	0
.................................................................................................................................................................................................................................CGCTGTGGTCGTCCTAGACT............................................................................................	20	3	17	0.06	1	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................TGCGGGGCTCCTTAGAAAG.........	19	3	20	0.05	1	0	1	0	0
....................................................................................................................................................................................................................................TGTGGTCGTCCTAGACTTGG.........................................................................................	20	3	20	0.05	1	0	0	1	0
.................................................................................................................................................................................................GGTTGTGGGTTTGGTGGG..............................................................................................................................	18	2	20	0.05	1	1	0	0	0
........................................................................GTCGCAGCCGTCGTACTG.......................................................................................................................................................................................................................................................	18	2	20	0.05	1	0	0	0	1

Species	Coordinate	ID	Alignment
droPer2	scaffold_20:755774-756110 -	dpe_1128	CCC-------------------------------GGAGCCTGGTCGCACCTGTCACAGACATGGATACTGTGCCGCCCACA-GTGTGCCCA---TGGG---CAGC---------------------AACAG--------------CAG----------CGGCGGCAGCAAGAC------GCCCCACAGCAGCGTGATCTACGTGAGCAAGTCG--------TCGAGCG----------------------------GCGCCGTCAGCACTACCGAGGC-GGTCCAA-----GCGGT-------------------------------------------GT------------CGCACTTCGAGTCCCTGGCCCATCACCCAACACCCACAC-CAC-------ACCAGCTCCATCAGAAGCAGCACCAGCAGGATCTGGGCCAAATGGCTAGCCCCATG------------------------------------------------------------------------------------------------------------------------------------------------------TTACCAC---CACCATCACCA---TCAGGCACAT---------G-------G-----GG----CGGCACAGGTGTACGCCCCGGGGAATCTGCCACACCATGC---
dp5	XR_group6:10845703-10846048 -		CCC-------------------------------GGAGCCTGGTCGCACCTGTCACAGACATGGATACTGTGCCGCCCACAGGTGTGCCCA---TGGC---CAGCAG------CAGCAGCAGCGGCGG------------------------------CGGCGGCAGCAAGAC------GCCCCACAGCAGCGTGATCTACGTGAGCAAGTCG--------TCGAGCG----------------------------GCGCCGTCAGCACTACCGAGGC-GGTCCAA-----GCGGT-------------------------------------------GT------------CGCACTTCGAGTCCCTGCCCCATCACCCA-CATCCACACCCAC-------ACCAGCTCCATCAGCAGCAGCACCAGCAGCATCTGGCCCAAATGGCCAGCCCCATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------TACCACCA---CCATCACCAT---------C-------AGGTCACTGGGGCGGGACAGGTGTACGCCCCGGGGAATCTGCCACACCATGC---
droWil2	scf2_1100000004768:2503756-2504079 +		C---------------------------------GTAGCCTGGTCGCACCTGTCACAGACATGGATACTGTGCCGCCCACAGGTGTGCCCA---TGGC---CAGT---------------------------------------------------------------AAAAT------GCCCCATAGTAATGTTATCTATGTGAATAAAACGAGTCCAAATTCATCATCTTCTTCTTCGTCTGCTAATGCCGTTTCGGTAGTTAGCACCACAGAGA---TACAAACTAACTTTGAGGCAAACAATCAATCGCAGCAGCAG-------------------------------------------------CAACACCAACAA--------------------C---------------------------------------------------------------------------AA---C---AGAC---------------------GCCAAATCATCATTCGATCT----------------------------------------------------------------------------ACCATCAT---CAACATCAACA---ACAACATCATCATCATCATCAGGGTTTGAATTTCT----CAACATTCTCATC--------------------CTCAAAC---
droVir3	scaffold_13049:21177140-21177498 +		AA----------------------TACCA---TCAGCGCCAGGTCGCACCTGTCACAGAATTGGATACTGTGCCGCCCGCAGGTGTGCCCA---TGGC---CAG---------------------------------------------------------------CAAAAT------GCCGCACAGCAATGTCATCTATGTGAACAAGTCCAGC-----TCCAGTG----------------------------TGGTGGTCAGCACCACAGAGG---CGCCACAGGGTCTGGGCCTGGG------GC----------------------------AGG------------CGCACTTTGAACAGTCGCCCCATCATGCC--------------------CAG------------------CA------------------CATGGCC---GCCATGTACCATCATCATCATCAACAACAGC---AGCAGCAA------------CAGCAGCAGCAGCAGCAG---------CAGCAGGCAGTTGAGG-------------CTGGCTATGCGAGTGCTGC---------------------ACATCATCATCAT---CATCATCATCT---A---ACGGTT---------G-------------------------CGCTGCCCG--CTGGTC----AG-----CCAAAT---
droMoj3	scaffold_6680:15567215-15567605 +		GCCGTCAT-TTTCAA--GACGGAATACCATCATCAGCACCAGGTCGCACCTGTCACAGAAATGGATACTGTGCCGCCCACAGGTGTGGCAC---TGGC---CAG---------------------------------------------------------------CAAAAT------GCCGCACAGCAATGTCATCTATGTGAACAAGTCCAGC-----TCCAGTG----------------------------TGGTGGTTAGCACCACCGAGG---CGCCACA---GCTATTGGCCCACCAGCCGC---CGC----------------------AGT------------CGCCCTTCGAGCAGTCGCCCCATCATGCC--------------------CAT---------CAT------CA------------------TATGGCC---GCCATGTATCACCATC------AGGCGACAG---AG-------------------------------------------------------------GGCGCCAACGTGCATGGCTATCCAAATGCTGGCCATCATCATGGTCAACAGCAACAGCCACATCTT---CATCATCATCA---TCATCAGCTA---------A-------CGGTCG------------CTGTGCCCG--CCG----CTCAGCCCAAT-AATG---
droGri2	scaffold_15110:22484193-22484519 -		C-A----TCTTTCAAACGTCGGAATACCA---TCAGCGCCAGGTCGCACCTGTCACAGAAATGGATACTGTGCCGTCCACAGGTGTGCCCAGCGTGGC---CAG---------------------------------------------------------------CAAGAT------GCCCCACAGCAATGTCATCTATGTGAACAAGTCCAGC-----TCCAGTG----------------------------TGGTGGTCAGCACCACCGAA------CCCAC---A------------CAGCTGC----------------------CGCCCCAGT------------CGCACTTTGATCCATCGCC-AGTCGCGAGTCATGCTCAT-CACGCTGCCCAT---------CAT------CA------------------CATGGCCGCCGCCATGTATCATCATC---ACCAGGCGCAAG---AG-------------------------------------------------------------GGCGCCACTCATCATGGCTATGTGAATGG----------------------------------------------------------------------------------------------------------------TGGCCATCATC---ATCATTT---
droAna3	scaffold_13337:5215796-5216132 +		----------------------------------GGAGCCTGGTAGCACCTGTCACAGACATGGATACTGTGCCGCCCACAGGTGTGACCA---TGGC---GAGTTC------CTCCTCCTCCTCCTCAACCTCCTCCTCATCATCATCCACCTC---GTCCACCTCCAAGAT------GGCCCACAGCAGCGTCATCTTTGTCAGCAAGTCGAAT------------------------------------------GCCGTCAGCACCACCGAAG---GACCCAC---ACTGGTGGTGCATCCCCAAC---AGC-------------------------AGCCGTTACCCCAGCACTTTGAATCCCTGCCCCACCATCCA--------------------C---------------------------------------------------------------------------AG---C---AGCTACAG------------CAGCCCCACA----------------------------------------------------------------------------------------ATCCCCACCAT---CAGCACCCACCACCACACCCACAC---------G-------GAATGTAC----C-----------------AGGGCTATGGCC---ATCATCC---
droBip1	scf7180000396371:549614-549923 +		----------------------------------GGAGCCTGGTAGCACCTGTCACAGACATGGATACTGTGCCGCCCACAGGTGTGACCA---TGGC---GAGTTC------CTCCTCCTCTTCCTC------------------------CTCGGGATCCACTTCCAAGAT------GCCCCACAGCAGCGTTATCTTTGTGAGCAAATCGAAC------------------------------------------GCTGTCAGCACCACCGAAG---GACCCACCACACTGGTGGTGCATCCCCAGC---CCC----------------------AGC---CGCTGCCCCAGCACTTTGATTCCCTGCCCCACCACCCG--------------------C---------------------------------------------------------------------------AG---C---AGCTG------------------------------C------------C----------------------------------------------------------------GGCTCCCCACCACCAC---CAGCACCCACA---ACACCCACAC---------G-------GCATGTAC----C-----------------AGGGTTATCCGC---ACCATCC---
droKik1	scf7180000302626:415616-415948 -		C-A-------------------------------GGAGCCTGGTAGCACCTGTCACAGATCTGGATACTGTGCCGCCCACAGGTGTGACCA---TGGCCTCGTGTTCCTCCAATTCGAGTTCGTCCTC------------------------------GTCCTCCTCAAAGCT------ACCGCACAGCAGTGTGATCTTTGTAAGCAAGTCGAGT------------------------------------------GCCGTTAGCACCACTGAAG---GCCCCTCTAGTGTGGTGGTGCAGCAGCAGC----------------------AG---------------CCACAGCACTTTGAGTCCCTGCCCCACCACCCA--------------------C---------------------------------------------------------------------------AA---C---AGCAGCA------------------------GCAGC------------A----------------------------------------------------------------GCAACAGCATCACCTTCATCAGCACCACCC---CCATCCGCAT---------G-------CCATGTAT----CCCCATGGTTATCCC--CAAGCCAATCTTC---ACCACCCCAA
droFic1	scf7180000454107:1588394-1588726 -		-----------------------------------GAGCCTGGTAGCACCTGTCACAGATCTGGATACTGTGCCACCCACAGGTGTGACCA---TGGC---GAGTTC------TTCGAATTCTCCCAA------------------------------CTCCTCCATCAAGCT------GCCCCACAGCAGTGTGATCTTTGTGAGCAAGTCGAGT------------------------------------------GCCGTCAGCACCACCGACG---GACCCAC---CGTGGTGGTGCAGCAACAGC----------------------A------GCCTCCGCTGCCCCAGCACTTCGAGTCCTTGCCCCACCACCCA--------------------C---------------------------------------------------------------------------AG---C---AGCAGCAC------------CAGCAGCAGCAACCAC------------A----------------------------------------------------------------ACAGCAGCATCACCTT---CAGCACCACCC---ACATCCGCAC---------G-------CAATGTAT----CCGCACGGTTATCCG--CAGGCCAATCTGC---ACCACCC---
droEle1	scf7180000490993:900987-901341 -		TTA-------------------------------GGAGCCTGGTAGCACCTGTCACAGATCTGGATACTGTGCCACCCACAGGTGTGACCA---TGGC---GAGTTC------TTCGAATTCCCCCAATTC---------------------------ATCATCCGTCAAGCTGCCGCTGCCCCACAGCAGTGTGATCTTCATGAGCAAATCGAGT------------------------------------------GCCGTCAGCACAAC------------CAC---TGTGGTGGTGCAACAGCAAC---ATCAACAACA----------ACAGCAGCAACAAATGCCCCATCATTTCGAGTCCCTGCCCCACCACGCA--------------------C---------------------------------------------------------------------------AA---C---AACAGCAC------------CAGCCACAGCAGCAACAA---------CC----------------------------------------------------------------ACAACAACATCACCTT---CAGCACCACCC---ACACCCGCAT---------G-------CGATGTAT----CCCCACGGATATCCG--CAGGCGAATCTTC---ACCACCC---
droRho1	scf7180000780225:55065-55416 -		TTA-------------------------------GGAGCCTGGTAGCACCTGTCACAGATCTGGATACTGTGCCACCCACAGGTGTGACCA---TGGC---GAGTTC------TTCGAATTCTCCCAATTC---------------------------CTCCTCCGTCAAGCT------GCCCCACAGCAGTGTGATCTTTATGAGCAAATCGAGT------------------------------------------GCCGTCAGCACCAC------------CAC---TGTGGTGGTGCAACAACAGC---AGC----------------------AGCCACCACTGCCCCATCATTTCGAGTCCCTGCCCCACCACCCA--------------------C---------------------------------------------------------------------------AA---C---AACAACAG---CACCAGCACCAGCCACAACAGCAACAG---------CTACAGCC----------------------------------------------------------GCAACAGCATCACCTT---CAGCACCACCC---ACACCCGCAT---------G-------CAATGTAT----CCGCACGGATATCCG--CAGGCGAATCTTC---ACCACCC---
droBia1	scf7180000302193:1304047-1304395 -		----------------------------------GGAGCCTGGGAGCACCTGTCACAGATCTGGATACTGTGCCACCCACAGGTGTGACCA---TGGC---GAGTTC------TTCGAATTCTCCCAG------------------------------TTCCCCCGTCAAGCT------GCCCCACAGCAGTGTGATCTTCGTGAGCAAGTCGAGT------------------------------------------GCCGTCAGCACCAC------------CAC---TGTGGTGGTGCAGCAGCAGC----------------------A------GGCGCCGATGCCCCAGCACTTCGAGTCCCTGCCCCACCACCCC--------------------C---------------------------------------------------------------------------AG---C---AGCAGCAGCAGCAACAGCTTCAGCCGCACCAGCAGCAACCGCACCAGCA----------------------------------------------------------------GCAGCAGCACCACCTT---CAGCACCACCC---ACACCCACAT---------T-------CGATGTAT----CCGCACGCATATCCG--CAGGCCAACCTGC---ACCACCA---
droTak1	scf7180000415794:248902-249244 -		TCA-------------------------------GGAGCCTGGTAGCACCTGTCACAGATCTGGATACTGTGCCACCCACAGGTGTGACCA---TGGC---GAGTTC------CTCGAATTCCCCCGG------------------------------CTCCCCCGTCAAGCT------GCCCCACAGCAGTGTGATCTTTGTGAGCAAATCGAGT------------------------------------------GCCGTCAGCACCACC------------AC---ATTGGTGGTGCAACAGCAGC---AGCAGCAGCA----------ACAGCAGTCACCGATGCCCCAGCACTTTGAGTCCCTGCCCCACCACCCA--------------------C---------------------------------------------------------------------------AA---CAGCAGCAGCAA------------CAACCACAGCAACAGCAG---------CA----------------------------------------------------------------TCAGCAATATCACCTT---CAACACCACC---------CGCAT---------G-------CAATGTAT----CCGCACGGATATCCC--CAGGACAATCTGC---ACCACCC---
droEug1	scf7180000409471:1567081-1567443 +		C-G-------------------------------GGAGCCTGGAAGCACCTGTCACAGATCTGGATACTGTGCCACCCACAGGTGTGACCA---TGGC---GAGTTC------TTCGAATTCTCCAAA------------------------------TTCTCCTGTCAAGCT------GCCCCACAGCAGTGTAATCTTCGTAAGCAAATCGAAT------------------------------------------GCCGTTAGCACCACCGATGTTGGACCAAG---TGTGGTGGTGAAACAGCAAC---AACAACAACAACAGCAGC-AACTACAGCCGCAAATGCTCCAGCATTTTGAGTCCCTGCCCCACCATCCA--------------------C---------------------------------------------------------------------------AACAGC---AACAACAC------------CAGCCGCAGCAGC---------------A----------------------------------------------------------------GCAACCACATCACCTT---CAGCACCACCC---ACACCCACAA---------G-------CGATGTTT----CCTCACGGGTTTCCG--CAGCCCAATCTGC---ACCACCC---
dm3	chr3L:17991645-17991990 -		TCA-------------------------------GGAGCCTGGTAGCACCTGTCACAGATCTGGATACTGTGCCACCCACAGGTGTGACCA---TGGC---GAGTTC------TTCGAATTCTCCCAA------------------------------CTCCTCCGTCAAGCT------GCCCCACAGCGGCGTGATCTTTGTCAGCAAATCGAGT------------------------------------------GCCGTCAGCACCACCGATG---GTCCCAC---TGCAGTGTTGCAACAGCAGC----------------------AGCCGCAGCAGCAAATGCCCCAGCACTTCGAGTCCCTGCCCCACCACCAC-----------------------------------------------------------------------------------------------CCCCAGC---AGGAACAC------------CAGCCACAGCAGCAGC------------A----------------------------------------------------------------GCAACAACATCACCTT---CAGCACCACCC---ACATCCACAT---------G-------TGATGTAT----CCGCACGGATATCAG--CAGGCCAATCTGC---ACCACTC---
droSim2	3l:17554589-17554934 -		TCA-------------------------------GGAGCCTGGTAGCACCTGTCACAGATCTGGATACTGTGCCACCCACAGGTGTGACCA---TGGC---GAGTTC------TTCGAATTCTCCCAA------------------------------CTCCTCCGTCAAGCT------GCCGCACAGCGGCGTGATCTTTGTCAGCAAATCGAGT------------------------------------------GCCGTCAGCACCACCGATG---GTCCCAC---TGTAGTGGTGCAACAGCAGC----------------------AGTCGCAGCAGCAAATGCCCCAGCACTTCGAGTCCCTGCCCCACCACCAC-----------------------------------------------------------------------------------------------CCACAGC---AGGAACAC------------CAGTCACAGCAGCAGC------------A----------------------------------------------------------------GCAGCAACATCACCTT---CAGCACCACCC---ACATCCACAT---------G-------TGATGTAT----CCGCACGGATATCCG--CAGGCCAATCTGC---ACCACCC---
droSec2	scaffold_89:94438-94783 -		TCA-------------------------------GGAGCCTGGTAGCACCTGTCACAGATCTGGATACTGTGCCACCCACAGGTGTGACCA---TGGC---GAGTTC------TTCGAATTCTTCCAA------------------------------CTCCTCCGTCAAGCT------GCCGCACAGCGGCGTGATCTTTGTCAGCAAATCGAGT------------------------------------------GCCGTCAGCACCACCGATG---GTCCCAC---TGTAGTGGTGCAACAGCAGC----------------------AGCCACAGCAGCAAATGCCCCAGCATTTCGAGTCCCTGCCCCACCACCAC-----------------------------------------------------------------------------------------------CCACAGC---AGGAACAC------------CAGCCACAGCAACAGC------------A----------------------------------------------------------------GCAACAACATCACCTT---CAGCACCACCC---ACATCCACAT---------G-------TGATGTAT----CCGCACGGATATCCG--CAGGCAAATCTGC---ACCACCC---
droYak3	3L:16058038-16058389 +		----------------------------------GGAGCCTGGTAGCACCTGTCACAGATCTGGATACTGTGCCACCCACAGGTGTGACCA---TGGC---CAGTTC------TTCGAATTCTCCCAA------------------------------CTCCTCCGTCAAGCT------GCCCCACAGCGGCGTGATCTTTGTCAGCAAATCGAGT------------------------------------------GCCGTCAGCACCACCGATG---GTTCCAC---TGTAGTGGTGCAGCAGCAGC---AGCAGCAGCAA------CC-ACAGCAGCAGCAAATGCCCCAGCACTTTGAGTCCCTGCCCCACCACCAC-----------------------------------------------------------------------------------------------CCACAAC---AGGAACAC------------CAGCAACAGCAGC---------------A----------------------------------------------------------------GCAGCAGCATCACCTG---CAGCACCACCC---ACATCCGCAT---------G-------CGATGTAT----CCGCACGGATATCCG--CAGGCCAGTCTGC---ACCACCC---
droEre2	scaffold_4784:15888708-15889070 +		-----------------------------------GAGCCTGGTAGCACCTGTCACAGATCTGGATACTGTGCCACCCACAGGTGTGACCA---TGGC---GAGTTC------TTCGAATTCTCCCAA------------------------------CTCCTCCGTCAAGCT------GCCCCTCAGCGGCGTGATCTTTGTCAGCAAATCGAGT------------------------------------------GCCGTCAGCACCACCGATG---GCCCCAC---TGTGGTGGTGCAGCAGCAGC---AGCAGTCGCAG------CC-GCCGCAGCAGCAAATGCCTCAGCACTTCGAGTCCCTGCCCCACCACCAC--------------------C---------------------------------------------------------------------ACCACCCACAAC---AGGAACAC------------CAGCCACTGCAGCAGCAG---------CA----------------------------------------------------------------GCAACAACATCACCTT---CAGCACCACCC---ACATCCGCAT---------G-------CGATGTAT----CCGCATGGATATGCG--CAGGCCAATCTGC---ACCACCC---

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

CCC-------------------------------GGAGCCTGGTCGCACCTGTCACAGACATGGATACTGTGCCGCCCACA-GTGTGCCCA---TGGG---CAGC---------------------AACAG--------------CAG----------CGGCGGCAGCAAGAC------GCCCCACAGCAGCGTGATCTACGTGAGCAAGTCG--------TCGAGCG----------------------------GCGCCGTCAGCACTACCGAGGC-GGTCCAA-----GCGGT-------------------------------------------GT------------CGCACTTCGAGTCCCTGGCCCATCACCCAACACCCACAC-CAC-------ACCAGCTCCATCAGAAGCAGCACCAGCAGGATCTGGGCCAAATGGCTAGCCCCATG------------------------------------------------------------------------------------------------------------------------------------------------------TTACCAC---CACCATCACCA---TCAGGCACAT---------G-------G-----GG----CGGCACAGGTGTACGCCCCGGGGAATCTGCCACACCATGC---	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...................................................GTCACAGACATGGATACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	4.00	4	4	0	0	0	0	0
........................................................................................................................................................................................................................................................................................GTCCAA-----GCGGT-------------------------------------------GT------------CGCACTTC..................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	3	0	0	0	0	0
...................................................GTCACAGACATGGATACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................GAGCAAGTCG--------TCGAGCG----------------------------GCGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0

dp5

CCC-------------------------------GGAGCCTGGTCGCACCTGTCACAGACATGGATACTGTGCCGCCCACAGGTGTGCCCA---TGGC---CAGCAG------CAGCAGCAGCGGCGG------------------------------CGGCGGCAGCAAGAC------GCCCCACAGCAGCGTGATCTACGTGAGCAAGTCG--------TCGAGCG----------------------------GCGCCGTCAGCACTACCGAGGC-GGTCCAA-----GCGGT-------------------------------------------GT------------CGCACTTCGAGTCCCTGCCCCATCACCCA-CATCCACACCCAC-------ACCAGCTCCATCAGCAGCAGCACCAGCAGCATCTGGCCCAAATGGCCAGCCCCATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------TACCACCA---CCATCACCAT---------C-------AGGTCACTGGGGCGGGACAGGTGTACGCCCCGGGGAATCTGCCACACCATGC---	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.........................................................................................................................................................................................................GTGAGCAAGTCG--------TCGAGCG----------------------------GC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	1
...........................................................................................................................................................................................................GAGCAAGTCG--------TCGAGCG----------------------------GC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................CGCCGTCAGCACTACCGAGGC-....................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................CTACGTGAGCAAGTCG--------TCGAGCG----------------------------GC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1
...............................................................................................GGC---CAGCAG------CAGCAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................AGCAGCAGCGGCGG------------------------------CGGCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................CAGCAGCAGCGGCGG------------------------------CGGCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................G------CAGCAGCAGCGGCGG------------------------------CGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................CAGCAG------CAGCAGCAGCGGCGG------------------------------C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................GCAG------CAGCAGCAGCGGCGG------------------------------CGGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................CAG------CAGCAGCAGCGGCGG------------------------------CGGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCAGCAGCACCAGCAGT..........................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0

droWil2

C---------------------------------GTAGCCTGGTCGCACCTGTCACAGACATGGATACTGTGCCGCCCACAGGTGTGCCCA---TGGC---CAGT---------------------------------------------------------------AAAAT------GCCCCATAGTAATGTTATCTATGTGAATAAAACGAGTCCAAATTCATCATCTTCTTCTTCGTCTGCTAATGCCGTTTCGGTAGTTAGCACCACAGAGA---TACAAACTAACTTTGAGGCAAACAATCAATCGCAGCAGCAG-------------------------------------------------CAACACCAACAA--------------------C---------------------------------------------------------------------------AA---C---AGAC---------------------GCCAAATCATCATTCGATCT----------------------------------------------------------------------------ACCATCAT---CAACATCAACA---ACAACATCATCATCATCATCAGGGTTTGAATTTCT----CAACATTCTCATC--------------------CTCAAAC---	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
........................................................................................................................................................................................................................................CTTCTTCGTCTGCTAATGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
..................................GTAGCCTGGTCGCACCTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................CATCATCTTCTTCTTCGTCTGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0
.....................................................................................................................................................................................................................................CTTCTTCTTCGTCTGCTAATGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................................................................................CGTTTCGGTAGTTAGCACCACAGAGA---...................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACATCATCATCATCAT...............................................................	19	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---ACAACATCATCATCATC.................................................................	19	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---ACAACATCATCATCATCAT...............................................................	21	20	0.05	1	0	1	0	0	0

droVir3

AA----------------------TACCA---TCAGCGCCAGGTCGCACCTGTCACAGAATTGGATACTGTGCCGCCCGCAGGTGTGCCCA---TGGC---CAG---------------------------------------------------------------CAAAAT------GCCGCACAGCAATGTCATCTATGTGAACAAGTCCAGC-----TCCAGTG----------------------------TGGTGGTCAGCACCACAGAGG---CGCCACAGGGTCTGGGCCTGGG------GC----------------------------AGG------------CGCACTTTGAACAGTCGCCCCATCATGCC--------------------CAG------------------CA------------------CATGGCC---GCCATGTACCATCATCATCATCAACAACAGC---AGCAGCAA------------CAGCAGCAGCAGCAGCAG---------CAGCAGGCAGTTGAGG-------------CTGGCTATGCGAGTGCTGC---------------------ACATCATCATCAT---CATCATCATCT---A---ACGGTT---------G-------------------------CGCTGCCCG--CTGGTC----AG-----CCAAAT---	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..........................................................................................A---TGGC---CAG---------------------------------------------------------------CAAAAT------GCCGCACAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................ACAGAGG---CGCCACAGGGTCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT---------G-------------------------CGCTGCCCG--CTGGTC----AG-----C........	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCAT---CATCATCATCT---A---AC............................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCATCAT---CATCATCATCT---A---..............................................................................	22	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCAACAACAGC---AGCA................................................................................................................................................................................................................................	19	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCATCAT---CATCATCAT.......................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCATCAT---CATCATCATCT---..................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCATCATCAT---CATCA...........................................................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGC---AGCAGCAA------------CAGCAGCAGCA.....................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------CAGCAGCAGCAGCAGCAG---------CA...................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAA------------CAGCAGCAGCAGCA..................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACAACAGC---AGCAGCA.............................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGC---AGCAGCAA------------CAGCAGCA........................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA------------CAGCAGCAGCAGCAGC................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---AGCAGCAA------------CAGCAGCAGC......................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGC---AGCAGCAA------------CAGCAG..........................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGC---AGCAGCAA------------CAGCA...........................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCAG---------C....................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGC---AGCAGCAA------------CAGCAGC.........................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCATCAT---CATCATCATC......................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCATCAT---CATCATCATC......................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA------------CAGCAGCAGCAGCAGCA...............................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGC---AGCAGCAA------------CA..............................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGC---AGCAGCAA------------CAGC............................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGC---AGCAGCAA------------CAGC............................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GCCGTCAT-TTTCAA--GACGGAATACCATCATCAGCACCAGGTCGCACCTGTCACAGAAATGGATACTGTGCCGCCCACAGGTGTGGCAC---TGGC---CAG---------------------------------------------------------------CAAAAT------GCCGCACAGCAATGTCATCTATGTGAACAAGTCCAGC-----TCCAGTG----------------------------TGGTGGTTAGCACCACCGAGG---CGCCACA---GCTATTGGCCCACCAGCCGC---CGC----------------------AGT------------CGCCCTTCGAGCAGTCGCCCCATCATGCC--------------------CAT---------CAT------CA------------------TATGGCC---GCCATGTATCACCATC------AGGCGACAG---AG-------------------------------------------------------------GGCGCCAACGTGCATGGCTATCCAAATGCTGGCCATCATCATGGTCAACAGCAACAGCCACATCTT---CATCATCATCA---TCATCAGCTA---------A-------CGGTCG------------CTGTGCCCG--CCG----CTCAGCCCAAT-AATG---	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAG---AG-------------------------------------------------------------GGCGCCAACGTGCAT......................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAG---AG-------------------------------------------------------------GGCGCCAACGTGCATG.....................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCACCATC------AGGCGACAG---AG-------------------------------------------------------------GGCGC................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCCG--CCG----CTCAGCCC...........	18	1	1.00	1	1	0	0	0	0	0
........................................................................CCGCCCACAGGTGTGGCAC---TGGC---C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0

droGri2

C-A----TCTTTCAAACGTCGGAATACCA---TCAGCGCCAGGTCGCACCTGTCACAGAAATGGATACTGTGCCGTCCACAGGTGTGCCCAGCGTGGC---CAG---------------------------------------------------------------CAAGAT------GCCCCACAGCAATGTCATCTATGTGAACAAGTCCAGC-----TCCAGTG----------------------------TGGTGGTCAGCACCACCGAA------CCCAC---A------------CAGCTGC----------------------CGCCCCAGT------------CGCACTTTGATCCATCGCC-AGTCGCGAGTCATGCTCAT-CACGCTGCCCAT---------CAT------CA------------------CATGGCCGCCGCCATGTATCATCATC---ACCAGGCGCAAG---AG-------------------------------------------------------------GGCGCCACTCATCATGGCTATGTGAATGG----------------------------------------------------------------------------------------------------------------TGGCCATCATC---ATCATTT---	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...................................................................................................................................................................................................................................................................................................................................................................CACTTTGATCCATCGCC-AGTC..................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0

droAna3

----------------------------------GGAGCCTGGTAGCACCTGTCACAGACATGGATACTGTGCCGCCCACAGGTGTGACCA---TGGC---GAGTTC------CTCCTCCTCCTCCTCAACCTCCTCCTCATCATCATCCACCTC---GTCCACCTCCAAGAT------GGCCCACAGCAGCGTCATCTTTGTCAGCAAGTCGAAT------------------------------------------GCCGTCAGCACCACCGAAG---GACCCAC---ACTGGTGGTGCATCCCCAAC---AGC-------------------------AGCCGTTACCCCAGCACTTTGAATCCCTGCCCCACCATCCA--------------------C---------------------------------------------------------------------------AG---C---AGCTACAG------------CAGCCCCACA----------------------------------------------------------------------------------------ATCCCCACCAT---CAGCACCCACCACCACACCCACAC---------G-------GAATGTAC----C-----------------AGGGCTATGGCC---ATCATCC---	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................................................................................................................................................................................CGAAT------------------------------------------GCCGTCAGCACCACC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................................GTCCACCTCCAAGAT------GGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT---CAGCACCCACCACCAC................................................................................	18	1	1.00	1	0	1	0	0	0	0

droBip1

----------------------------------GGAGCCTGGTAGCACCTGTCACAGACATGGATACTGTGCCGCCCACAGGTGTGACCA---TGGC---GAGTTC------CTCCTCCTCTTCCTC------------------------CTCGGGATCCACTTCCAAGAT------GCCCCACAGCAGCGTTATCTTTGTGAGCAAATCGAAC------------------------------------------GCTGTCAGCACCACCGAAG---GACCCACCACACTGGTGGTGCATCCCCAGC---CCC----------------------AGC---CGCTGCCCCAGCACTTTGATTCCCTGCCCCACCACCCG--------------------C---------------------------------------------------------------------------AG---C---AGCTG------------------------------C------------C----------------------------------------------------------------GGCTCCCCACCACCAC---CAGCACCCACA---ACACCCACAC---------G-------GCATGTAC----C-----------------AGGGTTATCCGC---ACCATCC---	Size	Hit Count	Total Norm	Total
No Reads

droKik1

C-A-------------------------------GGAGCCTGGTAGCACCTGTCACAGATCTGGATACTGTGCCGCCCACAGGTGTGACCA---TGGCCTCGTGTTCCTCCAATTCGAGTTCGTCCTC------------------------------GTCCTCCTCAAAGCT------ACCGCACAGCAGTGTGATCTTTGTAAGCAAGTCGAGT------------------------------------------GCCGTTAGCACCACTGAAG---GCCCCTCTAGTGTGGTGGTGCAGCAGCAGC----------------------AG---------------CCACAGCACTTTGAGTCCCTGCCCCACCACCCA--------------------C---------------------------------------------------------------------------AA---C---AGCAGCA------------------------GCAGC------------A----------------------------------------------------------------GCAACAGCATCACCTTCATCAGCACCACCC---CCATCCGCAT---------G-------CCATGTAT----CCCCATGGTTATCCC--CAAGCCAATCTTC---ACCACCCCAA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

-----------------------------------GAGCCTGGTAGCACCTGTCACAGATCTGGATACTGTGCCACCCACAGGTGTGACCA---TGGC---GAGTTC------TTCGAATTCTCCCAA------------------------------CTCCTCCATCAAGCT------GCCCCACAGCAGTGTGATCTTTGTGAGCAAGTCGAGT------------------------------------------GCCGTCAGCACCACCGACG---GACCCAC---CGTGGTGGTGCAGCAACAGC----------------------A------GCCTCCGCTGCCCCAGCACTTCGAGTCCTTGCCCCACCACCCA--------------------C---------------------------------------------------------------------------AG---C---AGCAGCAC------------CAGCAGCAGCAACCAC------------A----------------------------------------------------------------ACAGCAGCATCACCTT---CAGCACCACCC---ACATCCGCAC---------G-------CAATGTAT----CCGCACGGTTATCCG--CAGGCCAATCTGC---ACCACCC---	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TTA-------------------------------GGAGCCTGGTAGCACCTGTCACAGATCTGGATACTGTGCCACCCACAGGTGTGACCA---TGGC---GAGTTC------TTCGAATTCCCCCAATTC---------------------------ATCATCCGTCAAGCTGCCGCTGCCCCACAGCAGTGTGATCTTCATGAGCAAATCGAGT------------------------------------------GCCGTCAGCACAAC------------CAC---TGTGGTGGTGCAACAGCAAC---ATCAACAACA----------ACAGCAGCAACAAATGCCCCATCATTTCGAGTCCCTGCCCCACCACGCA--------------------C---------------------------------------------------------------------------AA---C---AACAGCAC------------CAGCCACAGCAGCAACAA---------CC----------------------------------------------------------------ACAACAACATCACCTT---CAGCACCACCC---ACACCCGCAT---------G-------CGATGTAT----CCCCACGGATATCCG--CAGGCGAATCTTC---ACCACCC---	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTA-------------------------------GGAGCCTGGTAGCACCTGTCACAGATCTGGATACTGTGCCACCCACAGGTGTGACCA---TGGC---GAGTTC------TTCGAATTCTCCCAATTC---------------------------CTCCTCCGTCAAGCT------GCCCCACAGCAGTGTGATCTTTATGAGCAAATCGAGT------------------------------------------GCCGTCAGCACCAC------------CAC---TGTGGTGGTGCAACAACAGC---AGC----------------------AGCCACCACTGCCCCATCATTTCGAGTCCCTGCCCCACCACCCA--------------------C---------------------------------------------------------------------------AA---C---AACAACAG---CACCAGCACCAGCCACAACAGCAACAG---------CTACAGCC----------------------------------------------------------GCAACAGCATCACCTT---CAGCACCACCC---ACACCCGCAT---------G-------CAATGTAT----CCGCACGGATATCCG--CAGGCGAATCTTC---ACCACCC---	Size	Hit Count	Total Norm	Total
No Reads

droBia1

----------------------------------GGAGCCTGGGAGCACCTGTCACAGATCTGGATACTGTGCCACCCACAGGTGTGACCA---TGGC---GAGTTC------TTCGAATTCTCCCAG------------------------------TTCCCCCGTCAAGCT------GCCCCACAGCAGTGTGATCTTCGTGAGCAAGTCGAGT------------------------------------------GCCGTCAGCACCAC------------CAC---TGTGGTGGTGCAGCAGCAGC----------------------A------GGCGCCGATGCCCCAGCACTTCGAGTCCCTGCCCCACCACCCC--------------------C---------------------------------------------------------------------------AG---C---AGCAGCAGCAGCAACAGCTTCAGCCGCACCAGCAGCAACCGCACCAGCA----------------------------------------------------------------GCAGCAGCACCACCTT---CAGCACCACCC---ACACCCACAT---------T-------CGATGTAT----CCGCACGCATATCCG--CAGGCCAACCTGC---ACCACCA---	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TCA-------------------------------GGAGCCTGGTAGCACCTGTCACAGATCTGGATACTGTGCCACCCACAGGTGTGACCA---TGGC---GAGTTC------CTCGAATTCCCCCGG------------------------------CTCCCCCGTCAAGCT------GCCCCACAGCAGTGTGATCTTTGTGAGCAAATCGAGT------------------------------------------GCCGTCAGCACCACC------------AC---ATTGGTGGTGCAACAGCAGC---AGCAGCAGCA----------ACAGCAGTCACCGATGCCCCAGCACTTTGAGTCCCTGCCCCACCACCCA--------------------C---------------------------------------------------------------------------AA---CAGCAGCAGCAA------------CAACCACAGCAACAGCAG---------CA----------------------------------------------------------------TCAGCAATATCACCTT---CAACACCACC---------CGCAT---------G-------CAATGTAT----CCGCACGGATATCCC--CAGGACAATCTGC---ACCACCC---	Size	Hit Count	Total Norm	Total
No Reads

droEug1

C-G-------------------------------GGAGCCTGGAAGCACCTGTCACAGATCTGGATACTGTGCCACCCACAGGTGTGACCA---TGGC---GAGTTC------TTCGAATTCTCCAAA------------------------------TTCTCCTGTCAAGCT------GCCCCACAGCAGTGTAATCTTCGTAAGCAAATCGAAT------------------------------------------GCCGTTAGCACCACCGATGTTGGACCAAG---TGTGGTGGTGAAACAGCAAC---AACAACAACAACAGCAGC-AACTACAGCCGCAAATGCTCCAGCATTTTGAGTCCCTGCCCCACCATCCA--------------------C---------------------------------------------------------------------------AACAGC---AACAACAC------------CAGCCGCAGCAGC---------------A----------------------------------------------------------------GCAACCACATCACCTT---CAGCACCACCC---ACACCCACAA---------G-------CGATGTTT----CCTCACGGGTTTCCG--CAGCCCAATCTGC---ACCACCC---	Size	Hit Count	Total Norm	Total
No Reads

dm3

TCA-------------------------------GGAGCCTGGTAGCACCTGTCACAGATCTGGATACTGTGCCACCCACAGGTGTGACCA---TGGC---GAGTTC------TTCGAATTCTCCCAA------------------------------CTCCTCCGTCAAGCT------GCCCCACAGCGGCGTGATCTTTGTCAGCAAATCGAGT------------------------------------------GCCGTCAGCACCACCGATG---GTCCCAC---TGCAGTGTTGCAACAGCAGC----------------------AGCCGCAGCAGCAAATGCCCCAGCACTTCGAGTCCCTGCCCCACCACCAC-----------------------------------------------------------------------------------------------CCCCAGC---AGGAACAC------------CAGCCACAGCAGCAGC------------A----------------------------------------------------------------GCAACAACATCACCTT---CAGCACCACCC---ACATCCACAT---------G-------TGATGTAT----CCGCACGGATATCAG--CAGGCCAATCTGC---ACCACTC---	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..............................................................................................................................................................................................................................................................................ACCGATG---GTCCCAC---TGCAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT---------G-------TGATGTAT----CCGCACGGAT.................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CA-------------------------------GGAGCCTGGTAGCACCTGTCACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................CCACCGATG---GTCCCAC---TGCAGTGTTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................CACAGGTGTGACCA---TGGC---GA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT----CCGCACGGATATC..............................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................G---GTCCCAC---TGCAGTGTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.............................................................................................................................................................................................................................................................................................................AACAGCAGC----------------------AGCCGCAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................CAACAGCAGC----------------------AGCCGCAGC......................................................................................................................................................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCACAGCAGCAGC------------A----------------------------------------------------------------GCA................................................................................................................	20	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACAGCAGCAGC------------A----------------------------------------------------------------GCAACA.............................................................................................................	21	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCACAGCAGCAGC------------A----------------------------------------------------------------GCAAA..............................................................................................................	21	12	0.17	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGC------------A----------------------------------------------------------------GCAACAACATC........................................................................................................	21	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................CAGCAGC----------------------AGCCGCAGCAGCAAAA...............................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................GCCCCACCACCAC-----------------------------------------------------------------------------------------------CCCCGA........................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TCA-------------------------------GGAGCCTGGTAGCACCTGTCACAGATCTGGATACTGTGCCACCCACAGGTGTGACCA---TGGC---GAGTTC------TTCGAATTCTCCCAA------------------------------CTCCTCCGTCAAGCT------GCCGCACAGCGGCGTGATCTTTGTCAGCAAATCGAGT------------------------------------------GCCGTCAGCACCACCGATG---GTCCCAC---TGTAGTGGTGCAACAGCAGC----------------------AGTCGCAGCAGCAAATGCCCCAGCACTTCGAGTCCCTGCCCCACCACCAC-----------------------------------------------------------------------------------------------CCACAGC---AGGAACAC------------CAGTCACAGCAGCAGC------------A----------------------------------------------------------------GCAGCAACATCACCTT---CAGCACCACCC---ACATCCACAT---------G-------TGATGTAT----CCGCACGGATATCCG--CAGGCCAATCTGC---ACCACCC---	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....................................................CACAGATCTGGATACTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................GTCACAGATCTGGATACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGC------------A----------------------------------------------------------------GCAGCAACATCAC......................................................................................................	22	6	1.17	7	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................CCACCGATG---GTCCCAC---TGTAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................CACCTGTCACAGATCTGGATACTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................ACCGATG---GTCCCAC---TGTAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................GTAGTGGTGCAACAGCAGC----------------------AGT............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TC------TTCGAATTCTCCCAA------------------------------CTCCTCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................CACCGATG---GTCCCAC---TGTAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................TGTCACAGATCTGGATACTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................GTCAGCAAATCGAGT------------------------------------------GCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TCA-------------------------------GGAGCCTGGTAGCACCTGTCACAGATCTGGATACTGTGCCACCCACAGGTGTGACCA---TGGC---GAGTTC------TTCGAATTCTTCCAA------------------------------CTCCTCCGTCAAGCT------GCCGCACAGCGGCGTGATCTTTGTCAGCAAATCGAGT------------------------------------------GCCGTCAGCACCACCGATG---GTCCCAC---TGTAGTGGTGCAACAGCAGC----------------------AGCCACAGCAGCAAATGCCCCAGCATTTCGAGTCCCTGCCCCACCACCAC-----------------------------------------------------------------------------------------------CCACAGC---AGGAACAC------------CAGCCACAGCAACAGC------------A----------------------------------------------------------------GCAACAACATCACCTT---CAGCACCACCC---ACATCCACAT---------G-------TGATGTAT----CCGCACGGATATCCG--CAGGCAAATCTGC---ACCACCC---	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............................................................................ACAGGTGTGACCA---TGGC---G.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0

droYak3

----------------------------------GGAGCCTGGTAGCACCTGTCACAGATCTGGATACTGTGCCACCCACAGGTGTGACCA---TGGC---CAGTTC------TTCGAATTCTCCCAA------------------------------CTCCTCCGTCAAGCT------GCCCCACAGCGGCGTGATCTTTGTCAGCAAATCGAGT------------------------------------------GCCGTCAGCACCACCGATG---GTTCCAC---TGTAGTGGTGCAGCAGCAGC---AGCAGCAGCAA------CC-ACAGCAGCAGCAAATGCCCCAGCACTTTGAGTCCCTGCCCCACCACCAC-----------------------------------------------------------------------------------------------CCACAAC---AGGAACAC------------CAGCAACAGCAGC---------------A----------------------------------------------------------------GCAGCAGCATCACCTG---CAGCACCACCC---ACATCCGCAT---------G-------CGATGTAT----CCGCACGGATATCCG--CAGGCCAGTCTGC---ACCACCC---	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.................................................................................................................TTCGAATTCTCCCAA------------------------------CTCCTCCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---AGGAACAC------------CAGCAACAGC......................................................................................................................................................................................................	19	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................GCAGCAGC---AGCAGCAGCAA------CC-AC............................................................................................................................................................................................................................................................................................................................................................................................	23	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................GGTGCAGCAGCAGC---AGCAGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................	24	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC------------CAGCAACAGCAGC---------------A----------------------------------------------------------------GCAGC..............................................................................................................	21	19	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................GCAGCAGC---AGCAGCAGCAA------.................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................GTGCAGCAGCAGC---AGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC---------------A----------------------------------------------------------------GCAGCAGCATCACCC....................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

-----------------------------------GAGCCTGGTAGCACCTGTCACAGATCTGGATACTGTGCCACCCACAGGTGTGACCA---TGGC---GAGTTC------TTCGAATTCTCCCAA------------------------------CTCCTCCGTCAAGCT------GCCCCTCAGCGGCGTGATCTTTGTCAGCAAATCGAGT------------------------------------------GCCGTCAGCACCACCGATG---GCCCCAC---TGTGGTGGTGCAGCAGCAGC---AGCAGTCGCAG------CC-GCCGCAGCAGCAAATGCCTCAGCACTTCGAGTCCCTGCCCCACCACCAC--------------------C---------------------------------------------------------------------ACCACCCACAAC---AGGAACAC------------CAGCCACTGCAGCAGCAG---------CA----------------------------------------------------------------GCAACAACATCACCTT---CAGCACCACCC---ACATCCGCAT---------G-------CGATGTAT----CCGCATGGATATGCG--CAGGCCAATCTGC---ACCACCC---	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.....................................................................................................................................................................................................CTTTGTCAGCAAATCGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACATCACCTT---CAGCACCAC.......................................................................................	25	1	1.00	1	0	1	0	0	0	0	0
....................................................................................GTGACCA---TGGC---GAGTTC------TTCGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
...........................................................................................................................................................................................................CAGCAAATCGAGT------------------------------------------GCCGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................GTCAGCACCACCGATG---GCCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................CGATG---GCCCCAC---TGTGGTGGT................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................GGTGCAGCAGCAGC---AGCAGTCGC.........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................GC---AGCAGTCGCAG------CC-GCCGCAGC......................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATCACCTT---CAGCACCA........................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................................................................................................................GGCGTGATCTTTGTCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
....................................................................................GTGACCA---TGGC---GAGTTC------TTCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
.......................................................................................................GTTC------TTCGAATTCTCCCAA------------------------------CTCCTCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................GCAGCAGCAGC---AGCAGTCGCAG------CC-..............................................................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................GCAGCAGCAGC---AGCAGTCGC.........................................................................................................................................................................................................................................................................................................................................................................................................	20	16	0.13	2	2	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAG---------CA----------------------------------------------------------------GCAACAACATCA.......................................................................................................	24	8	0.13	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................AGCAGCAGC---AGCAGTCGCAG------C................................................................................................................................................................................................................................................................................................................................................................................................	21	9	0.11	1	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................GCAGCAGCAGC---AGCAGTCGCA........................................................................................................................................................................................................................................................................................................................................................................................................	21	10	0.10	1	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAG---------CA----------------------------------------------------------------GCAACAAC...........................................................................................................	18	20	0.05	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAGCAGCAG---------CA----------------------------------------------------------------GCAAC..............................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG---------CA----------------------------------------------------------------GCAACAACATC........................................................................................................	18	20	0.05	1	0	0	0	0	0	1	0

dpe_1128

scaffold_20:755824-756060 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-19.1	-19.0	-18.8