ID:

dpe_1115

 Coordinate:

scaffold_2:8254065-8254204 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.9 -12.9 -12.9

Flybase annnotation

CDS [Dper\GL11699-cds]; CDS [Dper\GL11699-cds]; exon [dper_GLEANR_11837:1]; exon [dper_GLEANR_11837:2]; intron [Dper\GL11699-in]

No Repeatable elements found

mature
  1. scaffold_2:980671-980692 -
  2. scaffold_2:6340563-6340584 -
  3. dpe_1115  scaffold_2:8254122-8254143 +
  4. scaffold_3:6434566-6434587 +
  5. scaffold_16:849388-849409 -
  6. scaffold_16:999595-999616 -
  7. scaffold_19:1632817-1632838 -
star
  1. scaffold_10:2387676-2387697 +
  2. scaffold_0:11670076-11670097 +
  3. scaffold_2:980710-980731 -
  4. scaffold_2:6340602-6340623 -
  5. dpe_1115  scaffold_2:8254083-8254104 +
  6. scaffold_3:6434527-6434548 +
  7. scaffold_3:6690561-6690582 -
  8. scaffold_16:849427-849448 -
  9. scaffold_19:1632856-1632877 -
  10. scaffold_46:21587-21608 +
  11. scaffold_46:67769-67790 -

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------##################################################
GAGGTGCAACGCGACAAAGCTGCGGATGAAGATGGAGCGAAAGACCCAAGGTCCGAAGGCGACACCAGTTTAAGGTACGCGCTTGTCCCCAACGAACGAAGGACAAGTTGCTCAGTATGCCAAAAGCGGAAGAGGATGATTCGCCCGAAGAGTACATTCATAAATTTGTACTGATAACCGCTAATCGCAGAGCCCCTCAATAATCATGAACGCTACCCTCATATTCCGCTGCCACCGCCT
********************************************************************.....((((.((((((((((............))))))))......)).))))........*************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V111
male body		 V057
head
 V050
head
 V042
embryo
 M021
embryo
......................CGGATGAAGATGGAGCGAAAGA.................................................................................................................................................................................................... 22 0 11 1.45 16 1 15 0 0 0 0
......................................................................................................................................................................TGTACTGATAACCGCTAATCGCAGAGC............................................... 27 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................................TGTACGGATCACTGCTAATCG..................................................... 21 3 1 1.00 1 0 0 1 0 0 0
...........................................................................................................................................................................TGATAACCGCTAATCGCAGAGCCCCTCAA........................................ 29 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................TTGCTCAGTATGCCAAAAGCGG............................................................................................................... 22 0 7 1.00 7 3 2 0 1 1 0
....................TGCGGATGAAGATGGAGCGAAAGACC.................................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0
......................................................................................................................................................................TGTACTGATAACTGCTAATAGC.................................................... 22 2 1 1.00 1 0 0 0 1 0 0
......................CGGATGAAGATGGAGCGAAAGAC................................................................................................................................................................................................... 23 0 11 0.73 8 3 5 0 0 0 0
...........................................................................................................TTGCTCAGTATGCCAAAAGCGGA.............................................................................................................. 23 0 7 0.71 5 3 1 0 0 1 0
......................CGGATGAAGATGGAGCGAAAG..................................................................................................................................................................................................... 21 0 11 0.64 7 0 7 0 0 0 0
....................................................................TTTAAGGTACGCGCTTGTCCCC...................................................................................................................................................... 22 0 11 0.45 5 3 2 0 0 0 0
....................................................................TTTAAGGTACGCGCTTGTCCC....................................................................................................................................................... 21 0 11 0.45 5 4 1 0 0 0 0
....................................................................TTTAAGGTACGCGCTTGTCCCCAAC................................................................................................................................................... 25 0 11 0.27 3 3 0 0 0 0 0
....................TGCGGATGAAGATGGAGCGAAAGAC................................................................................................................................................................................................... 25 0 11 0.27 3 0 3 0 0 0 0
....................................................................TTTAAGGTACGCGCTTGTCCCCA..................................................................................................................................................... 23 0 11 0.27 3 3 0 0 0 0 0
....................................................................TTTAAGGTACGCGCTTGTCC........................................................................................................................................................ 20 0 11 0.18 2 0 2 0 0 0 0
....................................................................TTTAAGGTACGCGCTTGTCCCCAA.................................................................................................................................................... 24 0 11 0.18 2 2 0 0 0 0 0
......................................................................................................................................................................TGTACGGATAACTGCTAAGC...................................................... 20 3 6 0.17 1 0 0 1 0 0 0
..........................................GACCCAAGGTCCGAAGGC.................................................................................................................................................................................... 18 0 13 0.15 2 0 0 0 0 0 2
...........................................................................................................TTGCTCAGTATGCCAAAAGCGGAA............................................................................................................. 24 0 7 0.14 1 1 0 0 0 0 0
...........................................................................................................TTGCTCAGTATGCCCACAGCGGAAGA........................................................................................................... 26 2 7 0.14 1 0 1 0 0 0 0
...........................................................................................................TTGCTCAGTATGCCAAAAGCGGAAG............................................................................................................ 25 0 7 0.14 1 1 0 0 0 0 0
...............................................................................................................TCAGTATGCCAAAAGCGGAAG............................................................................................................ 21 0 7 0.14 1 1 0 0 0 0 0
...........................................................................................................TTGCTCAGTATTCCAAAAGCGGAAG............................................................................................................ 25 1 7 0.14 1 0 1 0 0 0 0
...........................................................................................................TTGCTCAGTATGCCAAAAGCGGAAGA........................................................................................................... 26 0 7 0.14 1 1 0 0 0 0 0
......................................................................................................................................................................TGTACGGATAACTGCTAATG...................................................... 20 3 9 0.11 1 0 0 1 0 0 0
.......................................................................................................................................................................................................GTAATAATGGACGCTACCC...................... 19 3 10 0.10 1 0 0 0 0 0 1
..............................................................................GCGCTTGTCCCCAACGAACGAAG........................................................................................................................................... 23 0 10 0.10 1 1 0 0 0 0 0
......................................................................................CCCCAACGAACGAAGGACAAGTTGC................................................................................................................................. 25 0 10 0.10 1 1 0 0 0 0 0
................................................................................................................................GAAGAGGATGATTCGCCCGAAGAGT....................................................................................... 25 0 11 0.09 1 0 1 0 0 0 0
......................................................................TAAGGTACGCGCTTGTCCCCAACGA................................................................................................................................................. 25 0 11 0.09 1 1 0 0 0 0 0
....................TGCGGATGAAGATGGAGCGAAAGA.................................................................................................................................................................................................... 24 0 11 0.09 1 0 1 0 0 0 0
....................................................................TTTAAGGTGCACGCTTGTCCCC...................................................................................................................................................... 22 2 11 0.09 1 1 0 0 0 0 0
......................CGGATGAAGATGGAGCGAAAGAA................................................................................................................................................................................................... 23 1 11 0.09 1 0 1 0 0 0 0
....................................................................TTTAAGGTACGCGCTTGTCCCCAACA.................................................................................................................................................. 26 1 11 0.09 1 1 0 0 0 0 0
....................................................................TTTAAGGTGCGCGCTTGTCCCCAC.................................................................................................................................................... 24 2 11 0.09 1 1 0 0 0 0 0
..................GCTGCGGATGAAGATGGAGCGAAAGAC................................................................................................................................................................................................... 27 0 11 0.09 1 0 1 0 0 0 0
.......................................................................AAGGTACGCGCTTGTCCCCAACG.................................................................................................................................................. 23 0 11 0.09 1 1 0 0 0 0 0
....................TGCGGATGAAGATGGAGCGAAAG..................................................................................................................................................................................................... 23 0 11 0.09 1 0 1 0 0 0 0
....................................................................TTTAAGGTACGCGCTTGTCCCCAACG.................................................................................................................................................. 26 0 11 0.09 1 1 0 0 0 0 0
....................................................................TTTAAGGTTCGCGCTTGTCCC....................................................................................................................................................... 21 1 11 0.09 1 1 0 0 0 0 0
....................................................................TTTAAGGTGCGCGCTTGTCCC....................................................................................................................................................... 21 1 11 0.09 1 1 0 0 0 0 0
..........................................................................................................................AAAGCGGAAGAGGATGATTCGCCCGA............................................................................................ 26 0 12 0.08 1 1 0 0 0 0 0
...................................................TCCGAAGGCGACACCAGTTTAAGGTA................................................................................................................................................................... 26 0 13 0.08 1 1 0 0 0 0 0
......................CGGATGAAGATGGAGCGAAAGG.................................................................................................................................................................................................... 22 1 16 0.06 1 0 1 0 0 0 0
....................TGCGGATGAAGATGGAGCGAAA...................................................................................................................................................................................................... 22 0 16 0.06 1 1 0 0 0 0 0
............................................................................................................................................................................................................................ATATTGTGCTGCCACAGCCT 20 3 16 0.06 1 0 0 0 1 0 0
......................CGGATGAAGATGGAGCGAA....................................................................................................................................................................................................... 19 0 17 0.06 1 1 0 0 0 0 0
.................................................................................................................................................................AAATTGGTACGGGTAACCG............................................................ 19 3 18 0.06 1 1 0 0 0 0 0
..................GCTGCGGATGAAGATGGAGC.......................................................................................................................................................................................................... 20 0 18 0.06 1 1 0 0 0 0 0
................AAGCTGCGGATGAAGATGGAGC.......................................................................................................................................................................................................... 22 0 18 0.06 1 0 1 0 0 0 0
...........................GTCGATGGAGCGAAAGACCA................................................................................................................................................................................................. 20 3 19 0.05 1 1 0 0 0 0 0
............................................................................................................................................................................................................................ATATTGCCCTGTCACCGCC. 19 3 20 0.05 1 0 0 0 1 0 0

Anti-sense strand reads

CTCCACGTTGCGCTGTTTCGACGCCTACTTCTACCTCGCTTTCTGGGTTCCAGGCTTCCGCTGTGGTCAAATTCCATGCGCGAACAGGGGTTGCTTGCTTCCTGTTCAACGAGTCATACGGTTTTCGCCTTCTCCTACTAAGCGGGCTTCTCATGTAAGTATTTAAACATGACTATTGGCGATTAGCGTCTCGGGGAGTTATTAGTACTTGCGATGGGAGTATAAGGCGACGGTGGCGGA
***************************************************************************************************************.....((((.((((((((((............))))))))......)).))))........******************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
 V042
embryo
 V111
male body		 V057
head
...........................................................................................TGCTTGCTTCCTGTTCAACGAGTCAT........................................................................................................................... 26 0 6 28.67 172 159 11 1 1 0
............................................................................................GCTTGCTTCCTGTTCAACGAGTCAT........................................................................................................................... 25 0 6 17.33 104 104 0 0 0 0
....................................................GGCTTCCGCTGTGGTCAAATTCCATG.................................................................................................................................................................. 26 0 12 8.00 96 96 0 0 0 0
.....................................................GCTTCCGCTGTGGTCAAATTCCATG.................................................................................................................................................................. 25 0 12 6.33 76 76 0 0 0 0
......................................................CTTCCGCTGTGGTCAAATTCCATG.................................................................................................................................................................. 24 0 12 5.75 69 69 0 0 0 0
.............................................................................................CTTGCTTCCTGTTCAACGAGTCAT........................................................................................................................... 24 0 6 3.33 20 20 0 0 0 0
..........................................................................................TTGCTTGCTTCCTGTTCAACGAGTCAT........................................................................................................................... 27 0 6 3.17 19 19 0 0 0 0
..............................................................................................TTGCTTCCTGTTCAACGAGTCAT........................................................................................................................... 23 0 6 2.50 15 14 0 1 0 0
...................................................AGGCTTCCGCTGTGGTCAAATTCCATG.................................................................................................................................................................. 27 0 12 2.33 28 28 0 0 0 0
........................................................TCCGCTGTGGTCAAATTCCATG.................................................................................................................................................................. 22 0 12 1.33 16 16 0 0 0 0
...........................................................................................TGCTTGCTTCCTGTTCAACGAGTCA............................................................................................................................ 25 0 6 1.33 8 6 2 0 0 0
.......................................................TTCCGCTGTGGTCAAATTCCATG.................................................................................................................................................................. 23 0 12 1.17 14 14 0 0 0 0
............................................................................................GCTTGCTTCCTGTTCAACGAGTCA............................................................................................................................ 24 0 6 1.17 7 7 0 0 0 0
..........CGCTGTTTCGACGCCTACTTCT................................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0
.......................................................................................................GTTCAACGAGTCATACGGTTTTCGCCT.............................................................................................................. 27 0 7 0.86 6 6 0 0 0 0
............................................................................................GCTTGCTTCCTGTTCAGCGAGTCAT........................................................................................................................... 25 1 6 0.83 5 5 0 0 0 0
....................................................GGCTTCCGCTGTGGTCAAATTCCAT................................................................................................................................................................... 25 0 13 0.77 10 10 0 0 0 0
.........................................................................................GTTGCTTGCTTCCTGTTCAACGAGTCAT........................................................................................................................... 28 0 6 0.67 4 4 0 0 0 0
......................................TTTTCTGGGTTCCAGGCTTCCGCTGT................................................................................................................................................................................ 26 1 2 0.50 1 1 0 0 0 0
........................................TTCTGGGTTCCAGGCTTCCGCTGTG............................................................................................................................................................................... 25 0 2 0.50 1 0 1 0 0 0
............................................................................................GCTTGCTTCCTGTTCAACGAGTC............................................................................................................................. 23 0 7 0.43 3 3 0 0 0 0
........................................................................................................................................................................................................ATTAGGACAAGCGATGGG...................... 18 3 20 0.40 8 2 2 0 4 0
...........................................................................................GGCTTGCTTCCTGTTCAACGAGTCAT........................................................................................................................... 26 1 6 0.33 2 0 2 0 0 0
............................................................................................GGTTGCTTCCTGTTCAACGAGTCAT........................................................................................................................... 25 1 6 0.33 2 2 0 0 0 0
.............................................................................................CTTGCTTCCTGTTCAACGAGTCA............................................................................................................................ 23 0 6 0.33 2 2 0 0 0 0
...........................................................................................TGCTTTCCTCCTGTTCAACGAGTCAT........................................................................................................................... 26 2 6 0.33 2 0 2 0 0 0
...........................................................................................TGCTTGCTTCCTGTTCAGCGAGTCAT........................................................................................................................... 26 1 6 0.33 2 2 0 0 0 0
...........................................................................................AGCTTGCTTCCTGTTCAACGAGTCAT........................................................................................................................... 26 1 6 0.33 2 2 0 0 0 0
............................................................................................GCTTGCTTCCTGTTCACCGAGTCAT........................................................................................................................... 25 1 6 0.33 2 2 0 0 0 0
...............................................................................................TGCTTCCTGTTCAACGAGTCAT........................................................................................................................... 22 0 6 0.33 2 2 0 0 0 0
.............................................................................................CTTGCTTCCTGTTCAGCGAGTCAT........................................................................................................................... 24 1 6 0.33 2 2 0 0 0 0
................................................................................................GCTTCCTGTTCAACGAGTCAT........................................................................................................................... 21 0 6 0.33 2 2 0 0 0 0
............................................................................................GCTTGCTTCCTGTTCATCGAGTCAT........................................................................................................................... 25 1 7 0.29 2 2 0 0 0 0
...........................................................................................TGCTTGCTTCCTGTTCATCGAGTCAT........................................................................................................................... 26 1 7 0.29 2 2 0 0 0 0
................................................................GGTCAAATTCCATGCGCGAACAGGGGT..................................................................................................................................................... 27 0 11 0.27 3 3 0 0 0 0
......................................................CTTCCGCTGTGGTCAGATTCCATG.................................................................................................................................................................. 24 1 12 0.25 3 3 0 0 0 0
..........................................................CGCTGTGGTCAAATTCCATG.................................................................................................................................................................. 20 0 12 0.25 3 3 0 0 0 0
.........................................................CCGCTGTGGTCAAATTCCATG.................................................................................................................................................................. 21 0 12 0.25 3 3 0 0 0 0
......................................................CTTCCGCTGTGGTCACATTCCATG.................................................................................................................................................................. 24 1 12 0.25 3 3 0 0 0 0
......................................................CTTCCGCTGTGGTCAAATTCCAT................................................................................................................................................................... 23 0 13 0.23 3 3 0 0 0 0
..............................................................................CGCGAACAGGGGTTGCTTGCTT............................................................................................................................................ 22 0 10 0.20 2 2 0 0 0 0
...............................................................................................................................CCTTCTCCTACTAAGCGGGCTT........................................................................................... 22 0 11 0.18 2 0 2 0 0 0
..................................................................TCAAATTCCATGCGCGAACAGGGGT..................................................................................................................................................... 25 0 11 0.18 2 2 0 0 0 0
..............................................................................................................................GCCTTCTCCTACTAAGCGGGCTTCT......................................................................................... 25 0 11 0.18 2 2 0 0 0 0
...................................................................CAAATTCCATGCGCGAACAGGGGTT.................................................................................................................................................... 25 0 11 0.18 2 2 0 0 0 0
............................................................................................GCTTGCTTCCTGTTCAGTGAGTCAT........................................................................................................................... 25 2 6 0.17 1 1 0 0 0 0
.................................................................................................CTTCCTGTTCAACGAGTCAT........................................................................................................................... 20 0 6 0.17 1 1 0 0 0 0
.........................................................................................GTTGCTTGCTTCCTGTTCAGCGAGTCAT........................................................................................................................... 28 1 6 0.17 1 1 0 0 0 0
..................................................CAGGCTTCCGCTGTGGTCAAATTCCATG.................................................................................................................................................................. 28 0 12 0.17 2 2 0 0 0 0
...................................................AGGCTTCCGCTGTGGTCAGATTCCATG.................................................................................................................................................................. 27 1 12 0.17 2 2 0 0 0 0
........................................................................................ATGTGCTTGCTTCCTGTTCAACGAGTCAT........................................................................................................................... 29 3 6 0.17 1 1 0 0 0 0
............................................................................................GCTTGCCTCCTGTTCAACGAGTCAT........................................................................................................................... 25 1 6 0.17 1 1 0 0 0 0
..........................................................................................TTGCTTGCTTCCTGTTCTACGAGTCA............................................................................................................................ 26 1 6 0.17 1 1 0 0 0 0
....................................................GGCTTCCGCTGTGGTCAGATTCCATG.................................................................................................................................................................. 26 1 12 0.17 2 2 0 0 0 0
.........................................................................................GTTGCTAGCTTCCTGTTCAACGAGTCAT........................................................................................................................... 28 1 6 0.17 1 1 0 0 0 0
............................................................................................GCTTGCTTCCTGTTCAAGGAGTCATT.......................................................................................................................... 26 2 6 0.17 1 1 0 0 0 0
..........................................................................................TTGCTTGCTTCCTGTTCAACGAGTCA............................................................................................................................ 26 0 6 0.17 1 1 0 0 0 0
...................................................................................................TCCTGTTCAACGAGTCATACGGTTT.................................................................................................................... 25 0 6 0.17 1 1 0 0 0 0
...........................................................GCTGTGGTCAAATTCCATGCGCGAAC........................................................................................................................................................... 26 0 12 0.17 2 2 0 0 0 0
.....................................................GCTTCCGCTGTGGTCAGATTCCATG.................................................................................................................................................................. 25 1 12 0.17 2 2 0 0 0 0
...................................................................................................TCCTGTTCAACGAGTCATACGGTT..................................................................................................................... 24 0 6 0.17 1 1 0 0 0 0
....................................................TGCTTCCGCTGTGGTCAAATTCCATG.................................................................................................................................................................. 26 1 12 0.17 2 2 0 0 0 0
............................................................................................GCTGGCTTCCTGTTCAACGAGTCAT........................................................................................................................... 25 1 6 0.17 1 1 0 0 0 0
................................................................................................GCTTCCTGTTCAACGAGTCATACGGTT..................................................................................................................... 27 0 6 0.17 1 1 0 0 0 0
...........................................................................................TGCTTGCTTCCTGTTCAACGAGTCAG........................................................................................................................... 26 1 6 0.17 1 1 0 0 0 0
........................................................TCCGCTGTGGTCAAATTCCATGC................................................................................................................................................................. 23 0 12 0.17 2 2 0 0 0 0
...........................................................................................TGCTTCCTTCCTGTTCAACGAGTCAT........................................................................................................................... 26 1 6 0.17 1 1 0 0 0 0
...........................................................................................TGCTTGCTTCCTGTTCACCGAGTCAT........................................................................................................................... 26 1 6 0.17 1 1 0 0 0 0
...........................................................................................TGATTGCTTCCTGTTCAACGAGTCAT........................................................................................................................... 26 1 6 0.17 1 1 0 0 0 0
............................................................................................ACTTGCTTCCTGTTCAACGAGTCAT........................................................................................................................... 25 1 6 0.17 1 1 0 0 0 0
...............................................................................................TGCTTCCTGTTCAACGAGTCATACGGT...................................................................................................................... 27 0 6 0.17 1 1 0 0 0 0
..................................................CAGGCTTCCGCTGTGGTCAAATTC...................................................................................................................................................................... 24 0 13 0.15 2 0 2 0 0 0
.......................................................TTCCGCTGTGGTCAAATTCCAT................................................................................................................................................................... 22 0 13 0.15 2 2 0 0 0 0
................................................TCCAGGCTTCCGCTGTGGTCAAA......................................................................................................................................................................... 23 0 13 0.15 2 0 2 0 0 0
.....................................................GCTTCCGCTGTGGTCAAATTCCAT................................................................................................................................................................... 24 0 13 0.15 2 2 0 0 0 0
................................................TCCAGGCTTCCGCTGTGGTCAAAT........................................................................................................................................................................ 24 0 13 0.15 2 0 2 0 0 0
.........................................................................................GTTGCTTGCTTCCTGTTCAACGAGT.............................................................................................................................. 25 0 7 0.14 1 1 0 0 0 0
...........................................................................................................AGCGAGTCATACGGTTTTCGCCTTCT........................................................................................................... 26 1 7 0.14 1 0 0 1 0 0
.......................................................................................................GTTCAACGAGTCATACGGTTTTCGCCTT............................................................................................................. 28 0 7 0.14 1 1 0 0 0 0
..................................................................................................................CATACGGTTTTCGCCTTCTCCTACT..................................................................................................... 25 0 7 0.14 1 1 0 0 0 0
..........................................................................................................CAACGAGTCATACGGTTTTC.................................................................................................................. 20 0 7 0.14 1 1 0 0 0 0
............................................................................................GCTTGCTTCCTGTTCGACGAGTCA............................................................................................................................ 24 1 7 0.14 1 1 0 0 0 0
....................................................................................................CCTGTTCAACGAGTCATACGGTTTT................................................................................................................... 25 0 7 0.14 1 1 0 0 0 0
.........................................................................................................TCAACGAGTCATACGGTTTTCGCCT.............................................................................................................. 25 0 7 0.14 1 1 0 0 0 0
.........................................................................................................TCAACGAGTCATACGGTTTTCGCCTTC............................................................................................................ 27 0 7 0.14 1 1 0 0 0 0
..............................................................................................TTGCTTCCTGTTCATCGAGTCAT........................................................................................................................... 23 1 7 0.14 1 1 0 0 0 0
...........................................................................................TGCTTGCTTCCTGTTCGACGAGTCA............................................................................................................................ 25 1 7 0.14 1 1 0 0 0 0
...............................................................................................................................................................................TTGTCGATTGGCGTCACGGG............................................. 20 3 7 0.14 1 0 0 0 0 1
..................................................................................................................CATACGGTTTTCGCCTTCTCCTAC...................................................................................................... 24 0 7 0.14 1 1 0 0 0 0
..........................................................................................TTGCTTGCTTCCTGTTCAACGAGTC............................................................................................................................. 25 0 7 0.14 1 1 0 0 0 0
.........................................................................................GTTGCTTTCTTCGTGTTAAACGA................................................................................................................................ 23 3 9 0.11 1 0 0 1 0 0
...............................................................................GCGAACAGGGGTTGCTTGCTT............................................................................................................................................ 21 0 10 0.10 1 1 0 0 0 0
.....................................................................................AGGGGTTGCTTGCTTCCTGTTCAA................................................................................................................................... 24 0 10 0.10 1 1 0 0 0 0
.................................................................................GAACAGGGGTTGCTTGCTTCCT......................................................................................................................................... 22 0 10 0.10 1 1 0 0 0 0
...........................................................................................................................TTCGCCTTCTCCTACTAAGGGGGCTTCT......................................................................................... 28 1 11 0.09 1 1 0 0 0 0
...............................................................................................................................CCTTCTCCTACTAAGCGGGCTTCT......................................................................................... 24 0 11 0.09 1 0 1 0 0 0
.................................................................................................................................TTCTCCTACTAAGCGGGCTTCTC........................................................................................ 23 0 11 0.09 1 1 0 0 0 0
.............................................................................................................................CGCCTTCTCCTACTAAGCGGGCTTC.......................................................................................... 25 0 11 0.09 1 1 0 0 0 0
...........................................................................................................................TTCGCCTTCTCCTACTAGGCGGGCTT........................................................................................... 26 1 11 0.09 1 1 0 0 0 0
.......................................................................................AGGTTGCTTGCTTCCTGT....................................................................................................................................... 18 1 11 0.09 1 0 1 0 0 0
.......................................................................................................................................TACTAAGCGGGCTTCTCA....................................................................................... 18 0 11 0.09 1 1 0 0 0 0
...........................................................................................................................TTCGCCTTCTCCTACTAAGCGGGCTTCT......................................................................................... 28 0 11 0.09 1 1 0 0 0 0
..................................................................................................................................TCTCCAACTAAGCGGGCTTC.......................................................................................... 20 1 11 0.09 1 1 0 0 0 0
...........................................................................................................................TTCGCCTTCTCCTACTAAGCGGGCTTC.......................................................................................... 27 0 11 0.09 1 1 0 0 0 0
.....................................................................AATTCCATGCGCGAACAGGGGTT.................................................................................................................................................... 23 0 11 0.09 1 1 0 0 0 0
...................................................................CAAATTCCATGCGCGAACAGGGGT..................................................................................................................................................... 24 0 11 0.09 1 1 0 0 0 0
..............................................................................CGCGAACAGGGGTTGCTT................................................................................................................................................ 18 0 11 0.09 1 1 0 0 0 0
..................................................................................................................................TCTCCTACTAAGCGGGCTTCT......................................................................................... 21 0 11 0.09 1 1 0 0 0 0
...................................................................CAAATTCCATGCGCGAACAGGGGTTG................................................................................................................................................... 26 0 11 0.09 1 1 0 0 0 0
.....................................................................................................................ACGGTTTTCGCCTTCTCCTACT..................................................................................................... 22 0 11 0.09 1 1 0 0 0 0
................................................................GGTCAAATTCCATGCGCGAAC........................................................................................................................................................... 21 0 12 0.08 1 1 0 0 0 0
.....................................................GGTTCCGCTGTGGTCAAATTCCATG.................................................................................................................................................................. 25 1 12 0.08 1 1 0 0 0 0
....................................................GGCTACCGCTGTGGTCAAATTCCATG.................................................................................................................................................................. 26 1 12 0.08 1 1 0 0 0 0
....................................................GGGTTCCGCTGTGGTCAAATTCCATG.................................................................................................................................................................. 26 1 12 0.08 1 1 0 0 0 0
........................................................TCCCCTGTGGTCAAATTCCATGC................................................................................................................................................................. 23 1 12 0.08 1 1 0 0 0 0
....................................................GGCTTCCGCTGTGGTCAAATTCCATGC................................................................................................................................................................. 27 0 12 0.08 1 1 0 0 0 0
........................................................TCCGCTGTGGTCAGATTCCATG.................................................................................................................................................................. 22 1 12 0.08 1 1 0 0 0 0
.......................................................TTCCGCTGTGGTCAGATTCCATG.................................................................................................................................................................. 23 1 12 0.08 1 1 0 0 0 0
......................................................CTTCCGCTGTGGTCAAATTCCATGC................................................................................................................................................................. 25 0 12 0.08 1 1 0 0 0 0
..................................................CAGGCTTCCGCTGTCGTCAAATTCCATG.................................................................................................................................................................. 28 1 12 0.08 1 1 0 0 0 0
.....................................................GCTTCCGCTGTGGTCATATTCCATG.................................................................................................................................................................. 25 1 12 0.08 1 1 0 0 0 0
....................................................GGCTTCCGCTGTGGTCATATTCCATG.................................................................................................................................................................. 26 1 12 0.08 1 1 0 0 0 0
.....................................................GCTTCCGCTGTGGTCAAATTCCATGC................................................................................................................................................................. 26 0 12 0.08 1 1 0 0 0 0
.....................................................GCTTCCGCAGTGGTCAAATTCCATG.................................................................................................................................................................. 25 1 12 0.08 1 1 0 0 0 0
...........................................................................................................................ATCGCCTTCTCCTACTAAGCGGGC............................................................................................. 24 1 12 0.08 1 1 0 0 0 0
..................................................................................................................................TCTCCTACTAAGCGGGCT............................................................................................ 18 0 12 0.08 1 1 0 0 0 0
...........................................................................................................................TTCGCCTTCTCCTACTAAGCGG............................................................................................... 22 0 12 0.08 1 1 0 0 0 0
..........................................................CGCTGTGGTCAAATTCCATGCGCGAAC........................................................................................................................................................... 27 0 12 0.08 1 0 0 0 1 0
....................................................GGCTTCCGCTGTGGTCAAATTCCA.................................................................................................................................................................... 24 0 13 0.08 1 1 0 0 0 0
.................................................CCAGGCTTCCGCTGTGGTCAAATTCCAT................................................................................................................................................................... 28 0 13 0.08 1 1 0 0 0 0
...................................................AGGCTTCCGCTGTGGTCAAATTCCAT................................................................................................................................................................... 26 0 13 0.08 1 1 0 0 0 0
....................................................GGCTTCCGCTGTGGTTAAATTCCA.................................................................................................................................................................... 24 1 13 0.08 1 1 0 0 0 0
........................................................TCCGCTGTGGTCAAATTC...................................................................................................................................................................... 18 0 13 0.08 1 1 0 0 0 0
.....................................................GCTTCCGCTGTGGTCAAATTC...................................................................................................................................................................... 21 0 13 0.08 1 1 0 0 0 0
........................................................TCCGCTGTGGTCAAATTCCAT................................................................................................................................................................... 21 0 13 0.08 1 1 0 0 0 0
....................................................GGCTTCCGCTGTGGTCAGATTCCATT.................................................................................................................................................................. 26 2 13 0.08 1 1 0 0 0 0
...................................................AGGCTTCCGCTGTGGTCAAATTCCA.................................................................................................................................................................... 25 0 13 0.08 1 0 1 0 0 0
..................................................CAGGCTTCCGCTGTGGTCAAA......................................................................................................................................................................... 21 0 13 0.08 1 1 0 0 0 0
......................................................CTTCCGCTGTGGTCAAAT........................................................................................................................................................................ 18 0 13 0.08 1 1 0 0 0 0
....................................................GGCTTCCGCTGTGGTCAAAT........................................................................................................................................................................ 20 0 13 0.08 1 1 0 0 0 0
..................CGACGCCTACTTCTACCTCGCTTT...................................................................................................................................................................................................... 24 0 16 0.06 1 1 0 0 0 0
................TTCGACGCCTACTTCTAC.............................................................................................................................................................................................................. 18 0 19 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_2:8254015-8254254 + dpe_1115 GAGGTGCAACGCGACAAAGCTGCGGATGAAGATGGAGCG------------------------------------------------AAAGACCC-AAGGTCCGAAGGCGACACCAGTTTAAGGTACGCGCTTGTCCCCAACGAACGAAGGACAAGTTGCTCAGTATGCCAAAAGCGGAAGAGGATGATTCGCCCGAAGAGTACATTCATAAATTTGTACTGAT--AACCGCTAATCGCAGAGCCCCTCAATAATCATGAACGCTACCCTCATATTCCGCTGCCACCGCC---T----------
dp5 XR_group8:1296836-1297093 - GATGTGCAACGCGACTTTGCTGGGGATGGAG------CAAACAAAACGCTGGACGAGTGCGCCCGGTGGTACTACAATGCCTTCTACAAGGACCTCAGCGTTCGAAATCGGTACAAGTTCAAGGTGCGCGCTTGTGCCAAACTAAAGAAGGATAAGTTGCTCAGCCTGCCAGAGGCAGAAGTAGATGAGACGTCCGAAGAGAGTCAGCATGAATCGG--CTGAT--GAT-GTTGAGGTCAAAGTGGACAAGTAAG-------------------------TATAAGCACCACCC----------
droWil2 scf2_1100000004513:5565873-5565927 + T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCAGAACCACTTAATAATGGCGAACGATATCCACCTATACCATTGCCTCCACC--------------
droVir3 scaffold_10324:965749-965827 + T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTGTTTATCGCAGAGCCCCTCAACAATGATGAGCGTTATCCACCGATACCATTGCCAGCGCCACCGCCAGCCGGGC
droMoj3 scaffold_6496:807953-808027 + AC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTGTTTTTTGAAGGGCCCATCAATAATGGAGAGCGCTATCCACCAATACCCTTACCACCGCCGCCGTCTCT-----
droGri2 scaffold_15245:6101428-6101463 + G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCGTTATCCACCTATACCGCTACCGCCACCGCCA----------
droAna3 scaffold_13266:16148940-16149018 + AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATACTGATAGATTCTTTTTTTGCAGTACCCGTAAATAATGGTGAACGTTTTCCGCCAATTCCACTTCCTCCGCC---G----------
droTak1 scf7180000415088:312917-312977 - G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTTGCAGTTCCCACCAACAAT---GACCGCTACCCACCGATTCCATTGCCAGCCCCTCCT----------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
GAGGTGCAACGCGACAAAGCTGCGGATGAAGATGGAGCG------------------------------------------------AAAGACCC-AAGGTCCGAAGGCGACACCAGTTTAAGGTACGCGCTTGTCCCCAACGAACGAAGGACAAGTTGCTCAGTATGCCAAAAGCGGAAGAGGATGATTCGCCCGAAGAGTACATTCATAAATTTGTACTGAT--AACCGCTAATCGCAGAGCCCCTCAATAATCATGAACGCTACCCTCATATTCCGCTGCCACCGCC---T----------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................CGGATGAAGATGGAGCG------------------------------------------------AAAGA....................................................................................................................................................................................................................22111.45160100015
.......................................................................................................................................................................................................................TGTACTGAT--AACCGCTAATCGCAGAGC............................................................2711.001010000
............................................................................................................................................................................................................................TGAT--AACCGCTAATCGCAGAGCCCCTCAA.....................................................2911.001010000
............................................................................................................................................................TTGCTCAGTATGCCAAAAGCGG..............................................................................................................................2271.007031102
....................TGCGGATGAAGATGGAGCG------------------------------------------------AAAGACC..................................................................................................................................................................................................................2611.001000001
......................CGGATGAAGATGGAGCG------------------------------------------------AAAGAC...................................................................................................................................................................................................................23110.738030005
............................................................................................................................................................TTGCTCAGTATGCCAAAAGCGGA.............................................................................................................................2370.715031001
......................CGGATGAAGATGGAGCG------------------------------------------------AAAG.....................................................................................................................................................................................................................21110.647000007
.....................................................................................................................TTTAAGGTACGCGCTTGTCCCC.....................................................................................................................................................................22110.455030002
.....................................................................................................................TTTAAGGTACGCGCTTGTCCC......................................................................................................................................................................21110.455040001
.....................................................................................................................TTTAAGGTACGCGCTTGTCCCCAAC..................................................................................................................................................................25110.273030000
....................TGCGGATGAAGATGGAGCG------------------------------------------------AAAGAC...................................................................................................................................................................................................................25110.273000003
.....................................................................................................................TTTAAGGTACGCGCTTGTCCCCA....................................................................................................................................................................23110.273030000
.....................................................................................................................TTTAAGGTACGCGCTTGTCC.......................................................................................................................................................................20110.182000002
.....................................................................................................................TTTAAGGTACGCGCTTGTCCCCAA...................................................................................................................................................................24110.182020000
..........................................................................................GACCC-AAGGTCCGAAGGC...................................................................................................................................................................................................18130.152200000
............................................................................................................................................................TTGCTCAGTATGCCAAAAGCGGAA............................................................................................................................2470.141010000
............................................................................................................................................................TTGCTCAGTATGCCAAAAGCGGAAG...........................................................................................................................2570.141010000
................................................................................................................................................................TCAGTATGCCAAAAGCGGAAG...........................................................................................................................2170.141010000
............................................................................................................................................................TTGCTCAGTATGCCAAAAGCGGAAGA..........................................................................................................................2670.141010000
...............................................................................................................................GCGCTTGTCCCCAACGAACGAAG..........................................................................................................................................................23100.101010000
.......................................................................................................................................CCCCAACGAACGAAGGACAAGTTGC................................................................................................................................................25100.101010000
.................................................................................................................................................................................GAAGAGGATGATTCGCCCGAAGAGT......................................................................................................25110.091000001
.......................................................................................................................TAAGGTACGCGCTTGTCCCCAACGA................................................................................................................................................................25110.091010000
....................TGCGGATGAAGATGGAGCG------------------------------------------------AAAGA....................................................................................................................................................................................................................24110.091000001
......................CGGATGAAGATGGAGCG------------------------------------------------AAAGAA...................................................................................................................................................................................................................23110.091000001
.....................................................................................................................TTTAAGGTACGCGCTTGTCCCCAACA.................................................................................................................................................................26110.091010000
..................GCTGCGGATGAAGATGGAGCG------------------------------------------------AAAGAC...................................................................................................................................................................................................................27110.091000001
........................................................................................................................AAGGTACGCGCTTGTCCCCAACG.................................................................................................................................................................23110.091010000
....................TGCGGATGAAGATGGAGCG------------------------------------------------AAAG.....................................................................................................................................................................................................................23110.091000001
.....................................................................................................................TTTAAGGTACGCGCTTGTCCCCAACG.................................................................................................................................................................26110.091010000
...........................................................................................................................................................................AAAGCGGAAGAGGATGATTCGCCCGA...........................................................................................................26120.081010000
....................................................................................................TCCGAAGGCGACACCAGTTTAAGGTA..................................................................................................................................................................................26130.081010000
......................CGGATGAAGATGGAGCG------------------------------------------------AAAGG....................................................................................................................................................................................................................22160.061000001
....................TGCGGATGAAGATGGAGCG------------------------------------------------AAA......................................................................................................................................................................................................................22160.061010000
......................CGGATGAAGATGGAGCG------------------------------------------------AA.......................................................................................................................................................................................................................19170.061010000
..................GCTGCGGATGAAGATGGAGC..........................................................................................................................................................................................................................................................................20180.061010000
................AAGCTGCGGATGAAGATGGAGC..........................................................................................................................................................................................................................................................................22180.061000001
dp5
GATGTGCAACGCGACTTTGCTGGGGATGGAG------CAAACAAAACGCTGGACGAGTGCGCCCGGTGGTACTACAATGCCTTCTACAAGGACCTCAGCGTTCGAAATCGGTACAAGTTCAAGGTGCGCGCTTGTGCCAAACTAAAGAAGGATAAGTTGCTCAGCCTGCCAGAGGCAGAAGTAGATGAGACGTCCGAAGAGAGTCAGCATGAATCGG--CTGAT--GAT-GTTGAGGTCAAAGTGGACAAGTAAG-------------------------TATAAGCACCACCC----------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......AACGCGACTTTGCTGGGG.......................................................................................................................................................................................................................................................................................1811.0010100000000
................................................................................................................................................................................AGAAGTAGATGAGACGTCCGAAGAGA......................................................................................................2611.0010100000000
.................................................................................................................................................................CAGCCTGCCAGAGGCAGAAGTAGATG.....................................................................................................................2611.0010100000000
droWil2
T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCAGAACCACTTAATAATGGCGAACGATATCCACCTATACCATTGCCTCCACC--------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................................................................................AATAATGGCGAACGATATCC...................................2011.00101000
droVir3
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTGTTTATCGCAGAGCCCCTCAACAATGATGAGCGTTATCCACCGATACCATTGCCAGCGCCACCGCCAGCCGGGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................................ATGATGAGCGTTATCCACCG...............................2011.001000000010000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................TATCCACCGATACCATTGCC....................2011.001000000000000000000000000000000000000010000000000000000000000000
..............................................................................................................................................................................................................................................................TGATGAGCGTTATCCACCGAT.............................2111.001000000000000000000010000000000000000000000000000000000000000000
droMoj3
AC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTGTTTTTTGAAGGGCCCATCAATAATGGAGAGCGCTATCCACCAATACCCTTACCACCGCCGCCGTCTCT-----SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................................................................................................................................................GAGAGCGCTATCCACCAATA............................2011.001000001
droGri2
G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCGTTATCCACCTATACCGCTACCGCCACCGCCA----------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATACTGATAGATTCTTTTTTTGCAGTACCCGTAAATAATGGTGAACGTTTTCCGCCAATTCCACTTCCTCCGCC---G----------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................................................................................CCCGTAAATAATGGTGAACGTTTTCCGCC................................2911.001100000
droTak1
G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTTGCAGTTCCCACCAACAAT---GACCGCTACCCACCGATTCCATTGCCAGCCCCTCCT----------SizeHit CountTotal NormTotal
No Reads

Generated: 06/08/2015 at 03:48 PM