ID:

dpe_110

 Coordinate:

scaffold_13:201745-201805 +

 Confidence:

Known Ortholog

 Class:

Testes-restricted

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CATCCCAATATCCCGCGAGTGCCCATACTGTTGGGTACGGATCGTAGTACTGATCGAGACGCTCGCTACTGGAGAATTCGACTTCCAATAGCAACGCCCTTTCGATTAGTTCTGCAATCAAAAAAAGCATCGCATTCCAGAATCATAAACGATTTATGTAG

***********************************....(((.((((.(((((((((((.((..((((.(((((........))))).))))...))..))))))))))).)))).)))......************************************ 		Read size # Mismatch Hit Count Total Norm Total V057

head

 V111

male body		 M042

female body

 V050

head

 M021

embryo
.......................................................................................ATAGCAACGCCCTTTCGATTAGT................................................... 23 0 1 45.00 45 27 9 2 6 1
..................................................TGATCGAGACGCTCGCTACTG.......................................................................................... 21 0 1 13.00 13 0 5 4 0 4
.......................................................................................ATAGCAACGCCCTTTCGATTAG.................................................... 22 0 1 6.00 6 2 3 1 0 0
......................................................................................AATAGCAACGCCCTTTCGATTAGT................................................... 24 0 1 5.00 5 2 1 1 1 0
..................................................TGATCGAGACGCTCGCTACTGG......................................................................................... 22 0 1 5.00 5 1 1 3 0 0
..................................................TGATCGAGACGCTCGCTACT........................................................................................... 20 0 1 4.00 4 1 1 2 0 0
..................................................TGATCGAGACGCTTGCTACTG.......................................................................................... 21 1 1 4.00 4 0 0 0 0 4
..................................................TGATCGAGACGCTCGCTACTGGAGAAT.................................................................................... 27 0 1 4.00 4 0 4 0 0 0
.......................................................................................ATAGCAACGCCCTTTCGATT...................................................... 20 0 1 2.00 2 0 0 0 2 0
...............................TGGGTACGGATCGTAGTAC............................................................................................................... 19 0 1 2.00 2 1 1 0 0 0
.............................GTTGGGTACGGATCGTAGTAC............................................................................................................... 21 0 1 2.00 2 0 2 0 0 0
......................................................................................AATAGCAACGCCCTTTCGATTAG.................................................... 23 0 1 2.00 2 1 0 1 0 0
..................................................TGATCGAGACGCTCGCTACTGGA........................................................................................ 23 0 1 2.00 2 0 1 0 0 1
.......................................................................................AGAGCAACGCCCTTTCGATTAG.................................................... 22 1 1 1.00 1 1 0 0 0 0
.......................................................................................ATAGCAACGGCCTTTCGATTAGT................................................... 23 1 1 1.00 1 1 0 0 0 0
.......................................................................................ATAGAAACGCCCTTTCGATTTGT................................................... 23 2 1 1.00 1 1 0 0 0 0
.......................................................................................ATAGCGACGCCCTTTCGATTAGT................................................... 23 1 1 1.00 1 0 0 0 1 0
..................................................TGATCGAGACGCTCGCTACTGGAG....................................................................................... 24 0 1 1.00 1 0 1 0 0 0
.......................................................................................ATAGCAACGCCCTTTCGGTTAGT................................................... 23 1 1 1.00 1 1 0 0 0 0
......................................................................................AATAGCAACGCCCTTTCGATCAGT................................................... 24 1 1 1.00 1 0 1 0 0 0
......................................................................................AATAGCAACGCCCTTTCGATT...................................................... 21 0 1 1.00 1 0 0 0 1 0
................................GGGTACGGATCGTAGTAC............................................................................................................... 18 0 1 1.00 1 0 1 0 0 0
......................................................................................AATAGCAACGCCCTTTCGATTATT................................................... 24 1 1 1.00 1 1 0 0 0 0
.......................................................................................ATAGCAACGGCCTTTCGATTATT................................................... 23 2 1 1.00 1 1 0 0 0 0
..................................................TTATCGAGACGCTCGCTACTGGAG....................................................................................... 24 1 1 1.00 1 0 1 0 0 0
.......................................................................................ATAGCAACGCCCTTTCGATGAT.................................................... 22 2 1 1.00 1 1 0 0 0 0
..................................................TGATCGAGACGCTCGCTACTGGTT....................................................................................... 24 2 1 1.00 1 0 1 0 0 0
..................................................TGATCGAGACGCTCGCTACTGGAGA...................................................................................... 25 0 1 1.00 1 0 1 0 0 0
.......................................................................................ATAGCAACGACCTTTCGATTAGT................................................... 23 1 1 1.00 1 1 0 0 0 0
.......................................................................................ATAGCAACGCCCATTCGATTAGT................................................... 23 1 1 1.00 1 1 0 0 0 0
...................................................GATCGAGACGCTCGCTACTG.......................................................................................... 20 0 1 1.00 1 0 0 1 0 0
..................................................TGATCGAGACGCTCGCTACTGT......................................................................................... 22 1 1 1.00 1 0 0 1 0 0
..................................................TGAGCGAGACGCTCGCTACT........................................................................................... 20 1 1 1.00 1 1 0 0 0 0
.......................................................................................ATAGCAACGCCCTTTCGATTAGTT.................................................. 24 0 1 1.00 1 0 0 1 0 0
......................................................................................AATAGCAACGCCCTTTCGATTA..................................................... 22 0 1 1.00 1 0 1 0 0 0
........................................................................................TAGCAAAGCCATTTCGATCAGT................................................... 22 3 1 1.00 1 0 0 0 1 0
..................................................TGATCGAGACGCTCGCTACTGGAGAA..................................................................................... 26 0 1 1.00 1 0 1 0 0 0
.......................................................................................ATAGCAACGCCCTTTCGCTTGGT................................................... 23 2 1 1.00 1 1 0 0 0 0
.......................................................................................ATAGCCACGCCCTTTCGTTTATT................................................... 23 3 2 0.50 1 1 0 0 0 0
...................................................................ACGGGAGAATTCGACTACC........................................................................... 19 2 2 0.50 1 0 1 0 0 0
................................................................................................................TGCAATGTAAATAAGCATCGCA........................... 22 3 4 0.25 1 1 0 0 0 0
................................................................................................................TGGCATCAAAAGAAGCATCGC............................ 21 3 6 0.17 1 1 0 0 0 0

Anti-sense strand reads

GTAGGGTTATAGGGCGCTCACGGGTATGACAACCCATGCCTAGCATCATGACTAGCTCTGCGAGCGATGACCTCTTAAGCTGAAGGTTATCGTTGCGGGAAAGCTAATCAAGACGTTAGTTTTTTTCGTAGCGTAAGGTCTTAGTATTTGCTAAATACATC

************************************....(((.((((.(((((((((((.((..((((.(((((........))))).))))...))..))))))))))).)))).)))......*********************************** 		Read size # Mismatch Hit Count Total Norm Total M021

embryo
....................................................................................................................................GTAAGGTCTTATTATTTG........... 18 1 2 1.00 2 2

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droPer2 scaffold_13:201695-201855 + dpe_110 confident CATCCCAATATCCCGCGAGTGCCCATACTGTTGGG-------------TACGGATCGTAGTACTGATCGAGACGCTCGCTACTGGAGAATTCGACTTCCAATAGCAACGCCCTTTCGATTAGTTCTGCAATCAAAAAAAGCATCGCATTCCAGAATCATAAACGATTTATGTAG
dp5 XL_group1e:8362577-8362750 - dps-mir-2520 Known_mirbase CATTCCAATATCCCGCGAGTGCCCATACTGTTGGGAGTTGATTTCAAGAACGGATCGTAGTACTGATCGAGACGCTTGCTACTGGAGAATTCGACTTCCAATAGCAACGCCCTTTCGATTAGTTCTGCAATCAAAAAAAGCATCGCATACCAGAATCATGAACGATTTATGTAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
CATCCCAATATCCCGCGAGTGCCCATACTGTTGGG-------------TACGGATCGTAGTACTGATCGAGACGCTCGCTACTGGAGAATTCGACTTCCAATAGCAACGCCCTTTCGATTAGTTCTGCAATCAAAAAAAGCATCGCATTCCAGAATCATAAACGATTTATGTAGSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
....................................................................................................ATAGCAACGCCCTTTCGATTAGT...................................................23145.00451206279
...............................................................TGATCGAGACGCTCGCTACTG..........................................................................................21113.0013440005
....................................................................................................ATAGCAACGCCCTTTCGATTAG....................................................2216.006010023
...................................................................................................AATAGCAACGCCCTTTCGATTAGT...................................................2415.005010121
...............................................................TGATCGAGACGCTCGCTACTGG.........................................................................................2215.005030011
...............................................................TGATCGAGACGCTCGCTACT...........................................................................................2014.004020011
...............................................................TGATCGAGACGCTCGCTACTGGAGAAT....................................................................................2714.004000004
....................................................................................................ATAGCAACGCCCTTTCGATT......................................................2012.002000200
...............................TGGG-------------TACGGATCGTAGTAC...............................................................................................................1912.002000011
.............................GTTGGG-------------TACGGATCGTAGTAC...............................................................................................................2112.002000002
...................................................................................................AATAGCAACGCCCTTTCGATTAG....................................................2312.002010010
...............................................................TGATCGAGACGCTCGCTACTGGA........................................................................................2312.002100001
...............................................................TGATCGAGACGCTCGCTACTGGAG.......................................................................................2411.001000001
...................................................................................................AATAGCAACGCCCTTTCGATT......................................................2111.001000100
................................GGG-------------TACGGATCGTAGTAC...............................................................................................................1811.001000001
...............................................................TGATCGAGACGCTCGCTACTGGTT.......................................................................................2411.001000001
...............................................................TGATCGAGACGCTCGCTACTGGAGA......................................................................................2511.001000001
................................................................GATCGAGACGCTCGCTACTG..........................................................................................2011.001010000
...............................................................TGATCGAGACGCTCGCTACTGT.........................................................................................2211.001010000
....................................................................................................ATAGCAACGCCCTTTCGATTAGTT..................................................2411.001010000
...................................................................................................AATAGCAACGCCCTTTCGATTA.....................................................2211.001000001
...............................................................TGATCGAGACGCTCGCTACTGGAGAA.....................................................................................2611.001000001
dp5
CATTCCAATATCCCGCGAGTGCCCATACTGTTGGGAGTTGATTTCAAGAACGGATCGTAGTACTGATCGAGACGCTTGCTACTGGAGAATTCGACTTCCAATAGCAACGCCCTTTCGATTAGTTCTGCAATCAAAAAAAGCATCGCATACCAGAATCATGAACGATTTATGTAGSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
...............................................................TGATCGAGACGCTTGCTACTGG.........................................................................................221195.00195040000101882
...............................................................TGATCGAGACGCTTGCTACTG..........................................................................................211186.001867100000221650
...............................................................TGATCGAGACGCTTGCTACT...........................................................................................201120.00120040000111140
....................................................................................................ATAGCAACGCCCTTTCGATTAGT...................................................23162.00620134316140210
...............................................................TGATCGAGACGCTTGCTACTGGAG.......................................................................................24135.003500000000350
....................................................................................................ATAGCAACGCCCTTTCGATTAG....................................................22133.003305120160180
...............................................................TGATCGAGACGCTTGCTAC............................................................................................19123.002300010000220
...............................................................TGATCGAGACGCTTGCTACTGGAGA......................................................................................25122.002200000000220
...............................................................TGATCGAGACGCTTGCTACTGA.........................................................................................22115.001500000000150
.............................................AAGAACGGATCGTAGTAC...............................................................................................................18111.001110000000100
...................................................................................................AATAGCAACGCCCTTTCGATTAGT...................................................24110.00100230113000
...................................................................................................AATAGCAACGCCCTTTCGATTAG....................................................2318.0080101200040
...............................................................TGATCGAGACGCTTGCTACTGGAGAA.....................................................................................2616.0060000000060
...............................................................TGATCGAGACGCTTGCTACTGT.........................................................................................2215.0050100000040
...............................................................TGATCGAGACGCTTGCTACTCT.........................................................................................2214.0040000000040
...............................................................TGATCGAGACGCTTGCTACTGGA........................................................................................2314.0040000000040
....................................................................................................ATAGCAACGCCCTTTCGATTAGTC..................................................2413.0030000001020
...................................................................................................AATAGCAACGCCCTTTCGATT......................................................2113.0030200000010
...........................................TCAAGAACGGATCGTAGTAC...............................................................................................................2013.0030000000030
...................................................................................................AATAGCAACGCCCTTTCGAT.......................................................2013.0030200000010
....................................................................................................ATAGCAACGCCCTTTCGATTAGC...................................................2313.0030012000000
..........................................TTCAAGAACGGATCGTAGTAC...............................................................................................................2113.0030000000030
...................................................................................................AATAGCAACGCCCTTTCGATTAA....................................................2312.0020010000010
....................................................................................................ATAGCAACGCCCTTTCGATTAGTTCTC...............................................2712.0020000000020
.....................................................................................................TAGCAACGCCCTTTCGATTAG....................................................2112.0020200000000
...............................................................TGATCGAGACGCTTGCTA.............................................................................................1812.0020000000020
...............................................................TGATCGAGACGCTTGCTACTGGC........................................................................................2312.0020000000020
....................................................................................................ATAGCAACGCCCTTTCGATTAGTT..................................................2412.0020200000000
............................................CAAGAACGGATCGTAGTAC...............................................................................................................1911.0010000000010
...................................................................................................AATAGCAACGCCCTTTCGATTA.....................................................2211.0010000001000
....................................................................................................ATAGCAACGCCCTTTCGATTAGTTAAA...............................................2711.0010000000010
...................................................................................................AATAGCAACGCCCTTTCGATTC.....................................................2211.0010100000000
..............................................................CTGATCGAGACGCTTGCTACT...........................................................................................2111.0010000000010
...................................................................................................AATAGCAACGCCCTTTCGATTAGTC..................................................2511.0010000001000
....................................................................................................ATAGCAACGCCCTTTCGATT......................................................2011.0010000010000
................................................................GATCGAGACGCTTGCTACTGGAG.......................................................................................2311.0010000000010
...................................................................................................AATAGCAACGCCCTTTCGATTAGC...................................................2411.0010001000000
...............................................................TGATCGAGACGCTTGCTACTCCC........................................................................................2311.0010000000010
..............................................................CTGATCGAGACGCTTGCTACTG..........................................................................................2211.0010000000010
................................................................GATCGAGACGCTTGCTACTG..........................................................................................2011.0011000000000
.................................................................ATCGAGACGCTTGCTACTGGAGA......................................................................................2311.0010000000010
....................................................................................................ATAGCAACGCCCTTTCGATTAGTA..................................................2411.0010000000010
...................................................................................................AATAGCAACGCCCTTTCGATTCC....................................................2311.0010001000000
...............................................................TGATCGAGACGCTTGCTACTGGAGAAT....................................................................................2711.0010000000010
...............................................................TGATCGAGACGCTTGCTAT............................................................................................1911.0010000001000
...............................................................TGATCGAGACGCTTGCTACA...........................................................................................2011.0010000000010
...............................................................TGATCGAGACGCTTGCTACTT..........................................................................................2111.0010100000000
................................................................GATCGAGACGCTTGCTACTGG.........................................................................................2111.0010000000010
.............................................AAGAACGGATCGTAGTACTC.............................................................................................................2011.0010000000010
...............................................................TGATCGAGACGCTTGCTACTGGTC.......................................................................................2411.0010000000010
...............................................................TGATCGAGACGCTTGCTACTGTC........................................................................................2311.0010000000001

Generated: 10/20/2015 at 06:49 PM