dpe_1089

exon [dper_GLEANR_10669:1]; CDS [Dper\GL10544-cds]; exon [dper_GLEANR_10669:2]; CDS [Dper\GL10544-cds]; intron [Dper\GL10544-in]

##################################################-------------------------------------------------------------------------------------################################################## TCGTGGTTGCCGTGGCCATTGCCGGGCTGTGCGTGCTGTCAGGGCTGAATGTAATGAAAATTGAGTAGAACAACAGCATACATGGCTCTCTGACAGTGGGAAACTACAATCCTGTAAACGTTTATCCTTTATCAGGCAGCGCCTCTCGACGTGCAGTGCAACTGTGGGGACGCAGGAACGCAGCA **************************************************************************..((((.((..........((((....))))...)))))).....**************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M021 embryo	V042 embryo	M042 female body	V111 male body
............................GTGCGTGCTGTCAGGGCT...........................................................................................................................................	18	0	1	24.00	24	24	0	0	0
................CATTGCCGGGCTGTGCGTGCT....................................................................................................................................................	21	0	1	15.00	15	14	1	0	0
...........................TGTGCGTGCTGTCAGGGCT...........................................................................................................................................	19	0	1	13.00	13	13	0	0	0
..........................CTGTGCGTGCTGTCAGGGCT...........................................................................................................................................	20	0	1	12.00	12	11	1	0	0
...........................................................................................................................................................GTGCAACTGTGGGGACGCAGGAACGCA...	27	0	1	5.00	5	5	0	0	0
............................................................................CATACATGGCTCTCTGACA..........................................................................................	19	0	1	4.00	4	4	0	0	0
............................GTGCGTGCTGTCAGGGCTGAAT.......................................................................................................................................	22	0	1	4.00	4	0	1	0	3
...........................................................................GCATACATGGCTCTCTGAC...........................................................................................	19	0	1	3.00	3	3	0	0	0
...........................TGTGCGTGCTGTCAGGGC............................................................................................................................................	18	0	1	3.00	3	3	0	0	0
.....................................................................................................................................ATGCAGCGCCTCTCGACGT.................................	19	1	1	3.00	3	0	3	0	0
............................GTGCGTGCTGTCAGGGCC...........................................................................................................................................	18	1	1	2.00	2	2	0	0	0
........................GGCTGTGCGTGCTGTCAGGGC............................................................................................................................................	21	0	1	2.00	2	2	0	0	0
...................................................................................................................................GAATGCAGCGCCTCTCGACGTGC...............................	23	3	1	2.00	2	0	2	0	0
........................................................................................................................................................GCAGTGCAACTGTGGGGACGCAG..........	23	0	1	2.00	2	0	2	0	0
................CATTGCCGGGCTGTGCGTGCG....................................................................................................................................................	21	1	1	2.00	2	2	0	0	0
...............CCATTGCCGGGCTGTGCGTGCT....................................................................................................................................................	22	0	1	2.00	2	2	0	0	0
....................GCCGGGCTGTGCGTGCTGTCAGGGCT...........................................................................................................................................	26	0	1	2.00	2	2	0	0	0
................CATTGCCGGGCTGTGCGTG......................................................................................................................................................	19	0	1	2.00	2	0	2	0	0
.................ATTGCCGGGCTGTGCGTGCTGTCAGGGCT...........................................................................................................................................	29	0	1	2.00	2	2	0	0	0
........GCCGTGGCCATTGCCGGGC..............................................................................................................................................................	19	0	1	2.00	2	2	0	0	0
.....................................................................................................................................ATGCAGCGCCTCTCGACGTGC...............................	21	1	1	1.00	1	0	0	1	0
.........................GCTGTGCGTGCTGTCAGGGCTGAATGC.....................................................................................................................................	27	1	1	1.00	1	0	1	0	0
..........................................................................................................................................................AGTGCAACTGTGGGGACGCA...........	20	0	1	1.00	1	0	1	0	0
..................................................GTAATGAAAATTGAGTAGAACAACAGC............................................................................................................	27	0	1	1.00	1	1	0	0	0
.................ATTGACGGGCTGTGCGTG......................................................................................................................................................	18	1	1	1.00	1	0	1	0	0
...........................TGTGCGTGCTTTCAGGGCT...........................................................................................................................................	19	1	1	1.00	1	1	0	0	0
..................................................................................................................................................................TGTGGGGACGCAGGAACGC....	19	0	1	1.00	1	0	0	1	0
.................ATTGCCGGGCTGTGCGTGCTGTCAGGGCC...........................................................................................................................................	29	1	1	1.00	1	1	0	0	0
..........CGTGGCCATTGCCGGGCT.............................................................................................................................................................	18	0	1	1.00	1	1	0	0	0
........................GGCTGTGCGTGCTGTCAGGGCT...........................................................................................................................................	22	0	1	1.00	1	1	0	0	0
....................................................................................................................................AATGCAGCGCCTCTCGACGTG................................	21	2	1	1.00	1	0	1	0	0
.................ATTGCCGGGCTGTGCGTGCT....................................................................................................................................................	20	0	1	1.00	1	0	1	0	0
.................ATTGCCGGGCTGTGCGTGC.....................................................................................................................................................	19	0	1	1.00	1	0	1	0	0
................CATTGCCGGGCTGTGCGTGCTGT..................................................................................................................................................	23	0	1	1.00	1	0	1	0	0
..........................CTGTGCGTGCTGTCAGGGCG...........................................................................................................................................	20	1	1	1.00	1	1	0	0	0
.............................................................................................................................................................GCAACTGTGGGGACGCAGGAAC......	22	0	1	1.00	1	0	0	1	0
.............................................................................ATACATGGCTCTCTGACA..........................................................................................	18	0	1	1.00	1	1	0	0	0
.......................................................................................................................................GCAGCGCCTCTCGACGTGCAGTGC..........................	24	0	1	1.00	1	0	1	0	0
.............GGCCATTGCCGGGCTGTGCGTGCTGT..................................................................................................................................................	26	0	1	1.00	1	0	1	0	0
..........CGTGGCCATTGCCGGGCTGTGCGTGCT....................................................................................................................................................	27	0	1	1.00	1	1	0	0	0
.....................................................................................................AACTACAATCCTGTAAACGT................................................................	20	0	1	1.00	1	0	1	0	0
................CATTGCCGGGCTGTGCGTGC.....................................................................................................................................................	20	0	1	1.00	1	0	1	0	0
.......................GGGCTGTGCGTGCTGTCAG...............................................................................................................................................	19	0	1	1.00	1	0	1	0	0
.............................................................................ATACATGGCTCTCTGACAGTGGGAAACT................................................................................	28	0	1	1.00	1	1	0	0	0
.....................................................................................................................................ATGCAGCGCCTCTCGACGTGCAGTGC..........................	26	1	1	1.00	1	0	1	0	0
.............................................................................ATACATGGCTCTCTGACAGT........................................................................................	20	0	1	1.00	1	1	0	0	0
............................GTGCGTGCTGTCAGGGCTGA.........................................................................................................................................	20	0	1	1.00	1	1	0	0	0
................CATTGCCGGGCTGTGCGGGCT....................................................................................................................................................	21	1	1	1.00	1	1	0	0	0
............................................................................CATACATGGCTCTCTGAC...........................................................................................	18	0	1	1.00	1	1	0	0	0
.......................................................................................................................................GCAGCGCCTCTCGACGTGCA..............................	20	0	1	1.00	1	0	1	0	0
...........................TGTGCGTGCTGTCAGGGCTGAATGCA....................................................................................................................................	26	1	1	1.00	1	1	0	0	0
.........CCGTGGCCATTGCCGGGCT.............................................................................................................................................................	19	0	1	1.00	1	1	0	0	0
.............GGCCATTGCCGGGCTGTGCGTGCTGTCAG...............................................................................................................................................	29	0	1	1.00	1	1	0	0	0
.........................GCTGTTCGTGCTGTCAGGGCT...........................................................................................................................................	21	1	1	1.00	1	1	0	0	0
.CGTGGTTGCCGTGGCCATTGCCGGG...............................................................................................................................................................	25	0	1	1.00	1	0	0	1	0
..................................................GTAATGAAGATTGAGTAGAAAAACAGC............................................................................................................	27	2	1	1.00	1	1	0	0	0
................CATTGCCGGGCTGTGCGTGT.....................................................................................................................................................	20	1	1	1.00	1	0	1	0	0
................CATTGCCGGGCTGTGCGTGCTG...................................................................................................................................................	22	0	1	1.00	1	0	0	1	0
.........................GCTGTGCGTGCTGTCAGGGCT...........................................................................................................................................	21	0	1	1.00	1	0	1	0	0
...........................TGTGCGTGCTGTGAGGGCT...........................................................................................................................................	19	1	1	1.00	1	1	0	0	0
...........................................................................................................................................................GTGCAACTGTGGGGACGCCGG.........	21	1	1	1.00	1	0	1	0	0
.............................................................................ATACATGGCTCTCTGACAGTG.......................................................................................	21	0	1	1.00	1	1	0	0	0
.....................................................................................................................................ATGCAGCGCCTCTCGACGGGC...............................	21	2	2	0.50	1	0	1	0	0
...................................................................................................................................GAATGCAGCGCCTCTCGACGT.................................	21	3	3	0.33	1	0	1	0	0
................................GTGCGGCCGGGGCTGAATG......................................................................................................................................	19	3	20	0.05	1	0	0	0	1

AGCACCAACGGCACCGGTAACGGCCCGACACGCACGACAGTCCCGACTTACATTACTTTTAACTCATCTTGTTGTCGTATGTACCGAGAGACTGTCACCCTTTGATGTTAGGACATTTGCAAATAGGAAATAGTCCGTCGCGGAGAGCTGCACGTCACGTTGACACCCCTGCGTCCTTGCGTCGT **************************************************************..((((.((..........((((....))))...)))))).....**************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V042 embryo	M042 female body
...................................................................CTTGTTGTCGTATGTACCG...................................................................................................	19	0	1	1.00	1	1	0
..............................................................................................................................GAAAAAGTACGTCGCGGGGAGC.....................................	22	3	2	0.50	1	0	1

Species	Coordinate	ID	Alignment
droPer2	scaffold_2:6613145-6613329 -	dpe_1089	TCGTGGTTGCCGTGG-CCATTGCCGGGCTG---TGCGTGCTGTCAGGGCTGAATGTAATGAAAATTGAGTAGAACA----AC-----------------------AGCA-------------------------------------------------------------TACATGGC------TCTCTGAC-----------------AGT-GGGAAACTACAA----------TCCTG-------T-A-------AACGTTTATCCT-TTATCAGGCAGCGCCTCTCGACGTGCAGTGCAACTGTGGGGACG------CAGGAACGCAGCA
dp5	3:6397247-6397431 -		TCGTGGTTGCCGTGG-CCATTGCCGGGCTG---TGCGTGCTGTCAGGGCTGAATGTAATGAAAATTGAGTAGAACA----AC-----------------------AGCA-------------------------------------------------------------TACATGGC------TCTCTGAC-----------------AGT-GGGAAACTACAA----------TCCTG-------T-A-------AACGTTTATCCT-TTATCAGGCAGCGCCTCTCGACGTGCAGTGCAACTGTGGGGACG------CAGGAACGCAGCA
droWil2	scf2_1100000004558:2485757-2485944 -		TCGCTGCTGCTGTTAGCAGTTATTGGACTGGTCAGCCTGTTGTCCTTTGTGCATGTAATGAAAACTGACTAGAAAA-----C-----------------------A------ACGAAAACAACA---------------------------------------------A------GA------GCTCAAAC-----------------AAC--AACAACAACAA----------TCACT-------T-T-------TTGTTTCACCCA-TCAACAGGCTAAACCCCTCGATATACAGTGCAATTATGG---CT------CTGGTACACAGAT
droVir3	scaffold_12875:15175814-15175970 +		GCCTGCTGGCCATGG-CCATC------------TTTCTGCTAGCCAGCGTGAATGTAATGAGAATTGACTAGC--C---AAA-----------------------A-------------------------------------------------------------------------------------------------------------GCTGTCGCAG----------CCATG-------T-T-------TAACTTTACCAT-TGAACAGGCTCTACCAGTCCAAGTGCAGTGCAATGATGGCAGCAATGGAACTCAAACCCAGAC
droMoj3	scaffold_6496:8654621-8654784 -		GCC--------ATGG-CCATTTGCC--------T-GCTGCTGTCCGCCGTCAACGTAATGAGAATTGACCGAC-CC---AAA-----------------------A-AG-------TACTGA---------------------------------------------------------------------------------------------GGCACGAGATTCATGCTAAACCATA-----------------CACCA--T---T-TTAACAGGCGCTGCCAGTGCGAGTGCAATGCAGCGACAACAACAACGGAACTCAGACGCAAAC
droGri2	scaffold_15245:8154971-8154981 -		----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAACTCAAAC
droAna3	scaffold_13266:10255391-10255454 +		TCGTATTTGCTGTCG-TTCTCGCCGGACTG---TGCGTGCTGTCCGGGCTGAATGTAATGAAAATTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000396428:674679-674742 +		TCGTATTTGCTGTCG-TTCTCGCCGGACTG---TGCGTGCTGTCCGGGCTGAATGTAATGAAAATTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000302385:735047-735313 -		CCGTATTTGCCGTTC-TCCTCGCTGGACTC---TGTGTGCTTCCAGGACTGAAGGAAAGGGTTACGAG-GGGAGCT----TAGGGATATATCTAGGGGGAATACTC------TTGCAGTTAATCAGGGTTTAAATTGTTTTATTTCGTAATTAAATCTTGTAATTGTGTT----TGGG------TTTTTAATGATAAATTAAAGTTTTTTCTGGAATAACCATAA----------CCTTT-------T-T-------TTATTTATTTCC-TTTCCAGGCGGCGCCC------ATTGAGTGCAATTCAGA---CA------ATGGCATCCAGGT
droFic1	scf7180000453948:1502735-1502894 +		TCGCAATTGCTGTTT-TTCTCGCCGGATTG---TGCGTGCTGTCCGGCCTGAACGTAATGAGAATGGAAATGAACTCG------------------------------GC------AAAT-------------------------------------------------------GGC------GCTGGAAA-----------------AGCTAAGCAACCGTAT----------CCCTA-------T-T----------------------TTCAGGCGGCGCCC------ATTCAGTGCAACAACGG---AA------GTGGCATCCAGAT
droEle1	scf7180000491214:275896-276072 +		TCGCATTTGCTGTTA-TTCTCGCCGGATTG---TGCGTGCTGTCCGGACTTAACGTAATGAAAATGAAAATCA-------AC-----------------------AACTGAAAT-------------------------------------------------------------GGG------GTTGTGAC-----------------AATCGAGTAAACATAA----------CCCTC-------C-TCC--GTCTACGA--TTTCT-CCCTCAGGCGGCGCCC------GTGGAATGCAATAATAG---CA------GTGGCACTCAGGT
droRho1	scf7180000779949:172661-172844 +		TCGCATTTGCTGTAG-TTCTCGCCGGATTG---TGCGTGCTGTCCGGTCTGAAGGTAATGAAAATGGGAATGAAAATGA-AC-----------------------AACAG------AAAT-------------------------------------------------------GTG------GTAGTGAC-----------------AATCGAGTAACCGTAA----------CCCTC-------C-C-CCCCTCTACGA--TTTCC-CTATCAGGCGGCACCC------GTGGAATGCAATAATGG---CA------GTGGCACCCAGAT
droBia1	scf7180000301754:2607006-2607163 +		TCGCATTTGCTGTTT-TTCTCGCCGGACTG---TGCGTGCTGTCCGGACTGAACGTAATGAAAATGAACATGAGTC-------------------------------TGG------------------------------------------------------------------AG------GTGGTGAC-----------------CATCGAGCGGGCGTAA----------CCCTT-------T-A--------CCAT--TTTCC-CCCGCAGGCGGCGCCC------GTGGTGTGCAACGATGG---CA------GTGGCA-------
droTak1	scf7180000415795:285815-285987 -		TCGCATTTGCTGTTT-TTCTCGCCGGATTG---TGCGTGCTGTCCGGTCTGAATGTAATGAAAATGAAA-------------------------------------------------ATGAGA---------------------------------------------C----TGGG------GTGGTGAC-----------------AACCGAGTAACCGTAA----------CCCAATATCCCCT-C-------TTCGT--TTTCCCCCTTTAGGCGGCGCCC------GTGGAATGCAATAACGG---CG------ATGGAACCCAGAT
droEug1	scf7180000409672:1158648-1158834 +		TCGCATTTGCTGTTG-TCCTCGCCGGATTG---TGCGTGCTGTCCGGTCTGAACGTAATGAAAATGAAAATGA-------------------------------------------AAATGAGA---------------------------------------------CTTCTCGGG------ATGGTCAC-----------------AATCGAGTAACCGTAA----------CCCTCTATCCTCTCTCTCTC--TCTGC--TTT-T-TTCCTAGGCGGCACCC------GTGGAATGCAATAATGG---CA------GTGGAATCCAGGT
dm3	chr2R:13930886-13931068 -		TCGCATTTGCTGTTT-TGCTCGCCGGATTG---TGCGTGCTATCCGGTCTGAATGTAATGAAAATGAAATTGAAAA-------------------------------TGGAAATGAAAATGAGA---------------------------------------------C----CGGG------TTGGTGAC-----------------AATCGAGTAACCGTAA----------CCCCC-------T-T-------TTCGT--AATCT-CCAACAGGCGGCACCC------GTGGAATGCAATAATGG---CG------GTGGCATCCAGAT
droSim2	2r:14620879-14621061 -	dsi_19850	TCGCATTTGCTGTTT-TGCTCGCCGGATTG---TGCGTGCTATCCGGTCTGAATGTAATGAAAATGAAATTGAAAA-------------------------------TGGAAATGAAAATGAGA---------------------------------------------C----CGGG------TTGGTGAC-----------------AATCGAGTAACCGTAA----------CCCCC-------T-T-------TTCGT--AATCT-CCAACAGGCGGCACCC------GTGGAATGCAATAATGG---CG------GTGGCATCCAGAT
droSec2	scaffold_1:11424424-11424606 -		TCGCATTTGCTGTTT-TGCTCGCCGGATTG---TGCGTGCTATCCGGTCTGAATGTAATGAAAATGAAATTGAAAA-------------------------------TGGAAATGAAAATGAGA---------------------------------------------C----CGGG------TTGGTGAC-----------------AATCGAGTAACCGTAA----------CCCCC-------T-T-------TTCGT--AATCT-CCAACAGGCGGCACCC------GTGGAATGCAATAATGG---CG------GTGGCATCCAGAT
droYak3	2R:15246342-15246536 +		TCGCATTTGCTGTTG-TACTCGCCGGACTG---TGCGTGCTATCCGGTCTGAATGTAATGAAAATGAGATTGAAAATGA-A------------------------AATTGAAATGAAAATGAGA---------------------------------------------C----CGAGCTGTTGTTGGTGAC-----------------AATCGAGTAACCGTAA----------CCCTC-------T-A-------TCCGC--TTTTT-TCCGCAGGCGGCACCC------GTGGAATGCAATAATGG---CA------ATGGCATCCAGAT
droEre2	scaffold_4845:8158898-8159074 -		TCGCATTTGCTGTTG-TTCTCGCCGGACTG---TGCGTGCTATCCGGCCTGAATGTAATGAAAATGAAAAT-------------------------------------GGAAATGAAAATGAGA---------------------------------------------C----CGAG------TTGGTGAC-----------------AATCGAGTAACCGTAA----------CCCTC-------T-A-------TCCGC--CTTCT-CCTACAGGCGGCACCC------GTGGAATGCAATAATGG---CA------ATGGCATCCAGAT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

TCGTGGTTGCCGTGG-CCATTGCCGGGCTG---TGCGTGCTGTCAGGGCTGAATGTAATGAAAATTGAGTAGAACA----AC-----------------------AGCA-------------------------------------------------------------TACATGGC------TCTCTGAC-----------------AGT-GGGAAACTACAA----------TCCTG-------T-A-------AACGTTTATCCT-TTATCAGGCAGCGCCTCTCGACGTGCAGTGCAACTGTGGGGACG------CAGGAACGCAGCA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.............................G---TGCGTGCTGTCAGGGCT...........................................................................................................................................................................................................................................................................................	18	1	24.00	24	24	0	0	0	0	0
.................CATTGCCGGGCTG---TGCGTGCT....................................................................................................................................................................................................................................................................................................	21	1	15.00	15	14	0	1	0	0	0
............................TG---TGCGTGCTGTCAGGGCT...........................................................................................................................................................................................................................................................................................	19	1	13.00	13	13	0	0	0	0	0
...........................CTG---TGCGTGCTGTCAGGGCT...........................................................................................................................................................................................................................................................................................	20	1	12.00	12	11	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................GTGCAACTGTGGGGACG------CAGGAACGCA...	27	1	5.00	5	5	0	0	0	0	0
...........................................................................................................CA-------------------------------------------------------------TACATGGC------TCTCTGAC-----------------A...........................................................................................................................	19	1	4.00	4	4	0	0	0	0	0
.............................G---TGCGTGCTGTCAGGGCTGAAT.......................................................................................................................................................................................................................................................................................	22	1	4.00	4	0	0	1	0	0	3
..........................................................................................................GCA-------------------------------------------------------------TACATGGC------TCTCTGAC-----------------............................................................................................................................	19	1	3.00	3	3	0	0	0	0	0
............................TG---TGCGTGCTGTCAGGGC............................................................................................................................................................................................................................................................................................	18	1	3.00	3	3	0	0	0	0	0
.............................G---TGCGTGCTGTCAGGGCC...........................................................................................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0
.........................GGCTG---TGCGTGCTGTCAGGGC............................................................................................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................GCAGTGCAACTGTGGGGACG------CAG..........	23	1	2.00	2	0	0	2	0	0	0
.................CATTGCCGGGCTG---TGCGTGCG....................................................................................................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
................CCATTGCCGGGCTG---TGCGTGCT....................................................................................................................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
.....................GCCGGGCTG---TGCGTGCTGTCAGGGCT...........................................................................................................................................................................................................................................................................................	26	1	2.00	2	2	0	0	0	0	0
.................CATTGCCGGGCTG---TGCGTG......................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0	0	0
..................ATTGCCGGGCTG---TGCGTGCTGTCAGGGCT...........................................................................................................................................................................................................................................................................................	29	1	2.00	2	2	0	0	0	0	0
........GCCGTGG-CCATTGCCGGGC.................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
..........................GCTG---TGCGTGCTGTCAGGGCTGAATGC.....................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................AGTGCAACTGTGGGGACG------CA...........	20	1	1.00	1	0	0	1	0	0	0
......................................................GTAATGAAAATTGAGTAGAACA----AC-----------------------AGC.................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................TGTGGGGACG------CAGGAACGC....	19	1	1.00	1	0	1	0	0	0	0
..................ATTGCCGGGCTG---TGCGTGCTGTCAGGGCC...........................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
..........CGTGG-CCATTGCCGGGCT................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.........................GGCTG---TGCGTGCTGTCAGGGCT...........................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..................ATTGCCGGGCTG---TGCGTGCT....................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
..................ATTGCCGGGCTG---TGCGTGC.....................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
.................CATTGCCGGGCTG---TGCGTGCTGT..................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0
...........................CTG---TGCGTGCTGTCAGGGCG...........................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................GCAACTGTGGGGACG------CAGGAAC......	22	1	1.00	1	0	1	0	0	0	0
............................................................................................................A-------------------------------------------------------------TACATGGC------TCTCTGAC-----------------A...........................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................GCAGCGCCTCTCGACGTGCAGTGC................................	24	1	1.00	1	0	0	1	0	0	0
.............GG-CCATTGCCGGGCTG---TGCGTGCTGT..................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0
..........CGTGG-CCATTGCCGGGCTG---TGCGTGCT....................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................AACTACAA----------TCCTG-------T-A-------AACGT.......................................................................	20	1	1.00	1	0	0	1	0	0	0
.................CATTGCCGGGCTG---TGCGTGC.....................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
........................GGGCTG---TGCGTGCTGTCAG...............................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
............................................................................................................A-------------------------------------------------------------TACATGGC------TCTCTGAC-----------------AGT-GGGAAACT................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
............................................................................................................A-------------------------------------------------------------TACATGGC------TCTCTGAC-----------------AGT-........................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.............................G---TGCGTGCTGTCAGGGCTGA.........................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...........................................................................................................CA-------------------------------------------------------------TACATGGC------TCTCTGAC-----------------............................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................GCAGCGCCTCTCGACGTGCA....................................	20	1	1.00	1	0	0	1	0	0	0
.........CCGTGG-CCATTGCCGGGCT................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.............GG-CCATTGCCGGGCTG---TGCGTGCTGTCAG...............................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
.CGTGGTTGCCGTGG-CCATTGCCGGG..................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.................CATTGCCGGGCTG---TGCGTGT.....................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
.................CATTGCCGGGCTG---TGCGTGCTG...................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
..........................GCTG---TGCGTGCTGTCAGGGCT...........................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
............................................................................................................A-------------------------------------------------------------TACATGGC------TCTCTGAC-----------------AGT-G.......................................................................................................................	21	1	1.00	1	1	0	0	0	0	0

dp5

TCGTGGTTGCCGTGG-CCATTGCCGGGCTG---TGCGTGCTGTCAGGGCTGAATGTAATGAAAATTGAGTAGAACA----AC-----------------------AGCA-------------------------------------------------------------TACATGGC------TCTCTGAC-----------------AGT-GGGAAACTACAA----------TCCTG-------T-A-------AACGTTTATCCT-TTATCAGGCAGCGCCTCTCGACGTGCAGTGCAACTGTGGGGACG------CAGGAACGCAGCA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........................................................................................................................................................................................................................................................................................................AGTGCAACTGTGGGGACG------CAG..........	21	1	3.00	3	0	0	1	0	2	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................GCAGTGCAACTGTGGGGACG------CAGGAAC......	27	1	2.00	2	0	0	1	0	1	0	0	0	0	0
.................CATTGCCGGGCTG---TGCGTGCTGT..................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	2	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................GCAGTGCAACTGTGGGGACG------CAGG.........	24	1	2.00	2	0	1	1	0	0	0	0	0	0	0
.............GG-CCATTGCCGGGCTG---TGCGTG......................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................CCATTGCCGGGCTG---TGCGTGCTGT..................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................GGACG------CAGGAACGCAGCA	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................GTGCAACTGTGGGGACG------CAGGAAC......	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................GCAGTGCAACTGTGGGGA.....................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......TGCCGTGG-CCATTGCCGGGCTG---TGCGT.......................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................ATTGCCGGGCTG---TGCGTGCTGTCAGGGCT...........................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.................CATTGCCGGGCTG---TGCGT.......................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0
................CCATTGCCGGGCTG---TGCGTGCTGTC.................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................AACTGTGGGGACG------CAGGAACGC....	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................GTGGGGACG------CAGGAACGCAGC.	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................G---TGCGTGCTGTCAGGGCT...........................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................GCAGCGCCTCTCGACGTGCA....................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droWil2

TCGCTGCTGCTGTTAGCAGTTATTGGACTGGTCAGCCTGTTGTCCTTTGTGCATGTAATGAAAACTGACTAGAAAA-----C-----------------------A------ACGAAAACAACA---------------------------------------------A------GA------GCTCAAAC-----------------AAC--AACAACAACAA----------TCACT-------T-T-------TTGTTTCACCCA-TCAACAGGCTAAACCCCTCGATATACAGTGCAATTATGG---CT------CTGGTACACAGAT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..................GTTATTGGACTGGTCAGC.........................................................................................................................................................................................................................................................................................................	18	2	1.00	2	2	0	0	0	0
.........CTGTTAGCAGTTATTGGAC.................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
..................GTTATTGGACTGGTCAGCCT.......................................................................................................................................................................................................................................................................................................	20	2	1.00	2	0	0	0	2	0
..............................................................................................................................................................................................................................................................................................................ATTATGG---CT------CTGGTACACA...	19	2	1.00	2	0	0	0	2	0
...........................................................................................................................................................................................................................................................................................................GCAATTATGG---CT------CTGGTA.......	18	2	0.50	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................AATTATGG---CT------CTGGTACA.....	18	2	0.50	1	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................CAGTGCAATTATGG---CT------CTGGTACACG...	26	2	0.50	1	0	1	0	0	0
....................TATTGGACTGGTCAGCCTGTT....................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	1	0
...........................CTGGTCAGCCTGTTGTCC................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	1	0
.....................ATTGGACTGGTCAGCCTGTTG...................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................CTAAACCCCTCGATATACAGTG.................................	22	2	0.50	1	0	0	0	1	0
.....................ATTGGACTGGTCAGCCTGT.....................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	1	0
..........................ACTGGTCAGCCTGTTGTCCT...............................................................................................................................................................................................................................................................................................	20	2	0.50	1	1	0	0	0	0
..................GTTATTGGACTGGTCAGCCTGT.....................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................ATTATGG---CT------CTGGTACACG...	19	2	0.50	1	1	0	0	0	0
..............................GTCAGCCTGTTGTCCTTTGTGC.........................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	1	0
..................GTTATTGGACTGGTCAGCCTGTTGTCCT...............................................................................................................................................................................................................................................................................................	28	2	0.50	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................AATTATGG---CT------CTGGTACACAGA.	22	2	0.50	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................CGATATACAGTGCAATTATGG---CT------CT...........	25	2	0.50	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................CAATTATGG---CT------CTGGTACAC....	20	2	0.50	1	0	1	0	0	0
.................................AGCCTGTTGTCCTTTGTGC.........................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	1	0

droVir3

GCCTGCTGGCCATGG-CCATC------------TTTCTGCTAGCCAGCGTGAATGTAATGAGAATTGACTAGC--C---AAA-----------------------A-------------------------------------------------------------------------------------------------------------GCTGTCGCAG----------CCATG-------T-T-------TAACTTTACCAT-TGAACAGGCTCTACCAGTCCAAGTGCAGTGCAATGATGGCAGCAATGGAACTCAAACCCAGAC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
........................................................................................................................................................................................................................................................................................CTACCAGTCCAAGTGCAGTGC................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
......................................................................................................................................................................................................................................................................................................GCAGTGCAATGATGGCAGCAATGG...............	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................GTGCAATGATGGCAGCAATG................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................AAGTGCAGTGCAATGATGGC.......................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................GTCCAAGTGCAGTGCAATGATGGC.......................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................AGTGCAATGATGGCAGCAATGGAACTC..........	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................CCAAGTGCAGTGCAATGATGGC.......................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................GTCCAAGTGCAGTGCAATGATGG........................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................GCTCTACCAGTCCAAGTGCA....................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GCC--------ATGG-CCATTTGCC--------T-GCTGCTGTCCGCCGTCAACGTAATGAGAATTGACCGAC-CC---AAA-----------------------A-AG-------TACTGA---------------------------------------------------------------------------------------------GGCACGAGATTCATGCTAAACCATA-----------------CACCA--T---T-TTAACAGGCGCTGCCAGTGCGAGTGCAATGCAGCGACAACAACAACGGAACTCAGACGCAAAC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........................................................................................................................................................................................................................CACGAGATTCATGCTAAACCATA-----------------CAC.........................................................................	26	1	1.00	1	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................GACAACAACAACGGAACTCA.........	20	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................GCGACAACAACAACGGAACTCAGACGC....	27	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................GACAACAACAACGGAACTCAGACGC....	25	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................CAGTGCGAGTGCAATGCAGCGA...........................	22	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................CGACAACAACAACGGAACTCAGACGC....	26	1	1.00	1	1	0	0	0	0	0
............................................CGCCGTCAACGTAATGAGA..............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1

droGri2

----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAACTCAAAC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droAna3

TCGTATTTGCTGTCG-TTCTCGCCGGACTG---TGCGTGCTGTCCGGGCTGAATGTAATGAAAATTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.............................G---TGCGTGCTGTCCGGGCTGAATGC.....................................................................................................................................................................................................................................................................................	24	1	4.00	4	0	0	0	0	0	4
.........................GACTG---TGCGTGCTGTCCGGGC............................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	3
.......TGCTGTCG-TTCTCGCCGGA..................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	1	0	1	0
.............................G---TGCGTGCTGTCCGGGCT...........................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	2
........GCTGTCG-TTCTCGCCGGAC.................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.CGTATTTGCTGTCG-TTCTCGCCGGACT................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
............................TG---TGCGTGCTGTCCGGGCTG..........................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..GTATTTGCTGTCG-TTCTCGCCGG...................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
..............G-TTCTCGCCGGACTG---TGCGTGCT....................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0
.........................GACTG---TGCGTGCTGTCCGGGCTGAA........................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
...........................CTG---TGCGTGCTGTCCGGGC............................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
....ATTTGCTGTCG-TTCTCGCCGGA..................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..........................ACTG---TGCGTGCTGTCCGGGCTGAATGC.....................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
.............................G---TGCGTGCTGTCCGGGCTG..........................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
..........................ACTG---TGCGTGCTGTCCGGG.............................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
............................TG---TGCGTGCTGTCCGGGCTGA.........................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1

droBip1

TCGTATTTGCTGTCG-TTCTCGCCGGACTG---TGCGTGCTGTCCGGGCTGAATGTAATGAAAATTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CCGTATTTGCCGTTC-TCCTCGCTGGACTC---TGTGTGCTTCCAGGACTGAAGGAAAGGGTTACGAG-GGGAGCT----TAGGGATATATCTAGGGGGAATACTC------TTGCAGTTAATCAGGGTTTAAATTGTTTTATTTCGTAATTAAATCTTGTAATTGTGTT----TGGG------TTTTTAATGATAAATTAAAGTTTTTTCTGGAATAACCATAA----------CCTTT-------T-T-------TTATTTATTTCC-TTTCCAGGCGGCGCCC------ATTGAGTGCAATTCAGA---CA------ATGGCATCCAGGT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TCGCAATTGCTGTTT-TTCTCGCCGGATTG---TGCGTGCTGTCCGGCCTGAACGTAATGAGAATGGAAATGAACTCG------------------------------GC------AAAT-------------------------------------------------------GGC------GCTGGAAA-----------------AGCTAAGCAACCGTAT----------CCCTA-------T-T----------------------TTCAGGCGGCGCCC------ATTCAGTGCAACAACGG---AA------GTGGCATCCAGAT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TCGCATTTGCTGTTA-TTCTCGCCGGATTG---TGCGTGCTGTCCGGACTTAACGTAATGAAAATGAAAATCA-------AC-----------------------AACTGAAAT-------------------------------------------------------------GGG------GTTGTGAC-----------------AATCGAGTAAACATAA----------CCCTC-------C-TCC--GTCTACGA--TTTCT-CCCTCAGGCGGCGCCC------GTGGAATGCAATAATAG---CA------GTGGCACTCAGGT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TCGCATTTGCTGTAG-TTCTCGCCGGATTG---TGCGTGCTGTCCGGTCTGAAGGTAATGAAAATGGGAATGAAAATGA-AC-----------------------AACAG------AAAT-------------------------------------------------------GTG------GTAGTGAC-----------------AATCGAGTAACCGTAA----------CCCTC-------C-C-CCCCTCTACGA--TTTCC-CTATCAGGCGGCACCC------GTGGAATGCAATAATGG---CA------GTGGCACCCAGAT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TCGCATTTGCTGTTT-TTCTCGCCGGACTG---TGCGTGCTGTCCGGACTGAACGTAATGAAAATGAACATGAGTC-------------------------------TGG------------------------------------------------------------------AG------GTGGTGAC-----------------CATCGAGCGGGCGTAA----------CCCTT-------T-A--------CCAT--TTTCC-CCCGCAGGCGGCGCCC------GTGGTGTGCAACGATGG---CA------GTGGCA-------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TCGCATTTGCTGTTT-TTCTCGCCGGATTG---TGCGTGCTGTCCGGTCTGAATGTAATGAAAATGAAA-------------------------------------------------ATGAGA---------------------------------------------C----TGGG------GTGGTGAC-----------------AACCGAGTAACCGTAA----------CCCAATATCCCCT-C-------TTCGT--TTTCCCCCTTTAGGCGGCGCCC------GTGGAATGCAATAACGG---CG------ATGGAACCCAGAT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TCGCATTTGCTGTTG-TCCTCGCCGGATTG---TGCGTGCTGTCCGGTCTGAACGTAATGAAAATGAAAATGA-------------------------------------------AAATGAGA---------------------------------------------CTTCTCGGG------ATGGTCAC-----------------AATCGAGTAACCGTAA----------CCCTCTATCCTCTCTCTCTC--TCTGC--TTT-T-TTCCTAGGCGGCACCC------GTGGAATGCAATAATGG---CA------GTGGAATCCAGGT	Size	Hit Count	Total Norm	Total
No Reads

dm3

TCGCATTTGCTGTTT-TGCTCGCCGGATTG---TGCGTGCTATCCGGTCTGAATGTAATGAAAATGAAATTGAAAA-------------------------------TGGAAATGAAAATGAGA---------------------------------------------C----CGGG------TTGGTGAC-----------------AATCGAGTAACCGTAA----------CCCCC-------T-T-------TTCGT--AATCT-CCAACAGGCGGCACCC------GTGGAATGCAATAATGG---CG------GTGGCATCCAGAT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
......................................................................................................................................................................................................................................................................................CGGCACCC------GTGGAATGCAATAATGG---C....................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CGCCGGATTG---TGCGTGCT....................................................................................................................................................................................................................................................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................TGCTCGCCGGATTG---TGCGTG......................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....ATTTGCTGTTT-TGCTCGCCG....................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................TTG---TGCGTGCTATCCGGTCTGAATG......................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...........GTTT-TGCTCGCCGGATTG---TGCGTG......................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................TG---TGCGTGCTATCCGGTCTGAATGCG....................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................G---TGCGTGCTATCCGGTCTGAATGC.....................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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........GCTGTTT-TGCTCGCCGGATTG---............................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................GCACCC------GTGGAATGCAAT.............................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................TATCCGGTCTGAATGCG....................................................................................................................................................................................................................................................................................	17	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TCGCATTTGCTGTTT-TGCTCGCCGGATTG---TGCGTGCTATCCGGTCTGAATGTAATGAAAATGAAATTGAAAA-------------------------------TGGAAATGAAAATGAGA---------------------------------------------C----CGGG------TTGGTGAC-----------------AATCGAGTAACCGTAA----------CCCCC-------T-T-------TTCGT--AATCT-CCAACAGGCGGCACCC------GTGGAATGCAATAATGG---CG------GTGGCATCCAGAT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
....ATTTGCTGTTT-TGCTCGCCGG...................................................................................................................................................................................................................................................................................................................	21	1	4.00	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................CTCGCCGGATTG---TGCGTGCT....................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CCGGATTG---TGCGTGCTATCC................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................TTG---TGCGTGCTATCCGGTCTGAAT.......................................................................................................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....ATTTGCTGTTT-TGCTCGCC.....................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................GCTATCCGGTCTGAATGC.....................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...CATTTGCTGTTT-TGCTCGCCG....................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............T-TGCTCGCCGGATTG---TGCGTGCTATCC................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................TGCTCGCCGGATTG---TGCGTG......................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................GTGCTATCCGGTCTGAATG......................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................GTGCTATCCGGTCTGAAT.......................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................CGGATTG---TGCGTGCTATCC................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CGCATTTGCTGTTT-TGCTCGCC.....................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................G---TGCGTGCTATCCGGTCTGAA........................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CGCCGGATTG---TGCGTGCC....................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................TG---TGCGTGCTATCCGGTCTGAATGC.....................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................GTGCTATCCGGTCTGAATGC.....................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................TGCTATCCGGTCTGAATGC.....................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....TTTGCTGTTT-TGCTCGCCGGG..................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TTGCTGTTT-TGCTCGCCGGATTG---TGCGTG......................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...........................TTG---TGCGTGCTATCCGGTCTGAATGC.....................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................CTCGCCGGATTG---TGCGTGCG....................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........GTTT-TGCTCGCCGGATTG---TGC.........................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.....TTTGCTGTTT-TGCTCGCC.....................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...CATTTGCTGTTT-TGCTCGCCGGAT.................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........TGTTT-TGCTCGCCGGATTG---TGCGTG......................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
....................CGCCGGATTG---TGCGTGCT....................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TCGCATTTGCTGTTT-TGCTCGCCGGATTG---TGCGTGCTATCCGGTCTGAATGTAATGAAAATGAAATTGAAAA-------------------------------TGGAAATGAAAATGAGA---------------------------------------------C----CGGG------TTGGTGAC-----------------AATCGAGTAACCGTAA----------CCCCC-------T-T-------TTCGT--AATCT-CCAACAGGCGGCACCC------GTGGAATGCAATAATGG---CG------GTGGCATCCAGAT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
......................................GCTATCCGGTCTGAATGC.....................................................................................................................................................................................................................................................................................	18	1	4.00	4	0	0	4	0
....................CGCCGGATTG---TGCGTGCTATCC................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
.....................................TGCTATCCGGTCTGAATGCG....................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
............................TG---TGCGTGCTATCCGGTCTGAATGC.....................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
.......................................................TAATGAAAATGAAATTGAAAA-------------------------------T.................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0
................TGCTCGCCGGATTG---TGCGTG......................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
....................................GTGCTATCCGGTCTGAATGC.....................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
.................................TGCGTGCTATCCGGTCTGAATGC.....................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
.........................GATTG---TGCGTGCTATCCGGTCTGAA........................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1
...........GTTT-TGCTCGCCGGATTG---TGCGT.......................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
...CATTTGCTGTTT-TGCTCGCCGG...................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
.......................................................................................................................................................................................................................................................T-T-------TTCGT--AATCT-CCAACAGGCGGCA..................................................	25	1	1.00	1	0	0	0	1
...........................TTG---TGCGTGCTATCCGGTCTGAAT.......................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1
.............................................................................................................................................................................................GAC-----------------AATCGAGTAACCGTAA----------CC................................................................................................	21	1	1.00	1	0	0	1	0
.....TTTGCTGTTT-TGCTCGCCGGATTG---............................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1
.........................GATTG---TGCGTGCTATCCGGTCTGA.........................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1

droYak3

TCGCATTTGCTGTTG-TACTCGCCGGACTG---TGCGTGCTATCCGGTCTGAATGTAATGAAAATGAGATTGAAAATGA-A------------------------AATTGAAATGAAAATGAGA---------------------------------------------C----CGAGCTGTTGTTGGTGAC-----------------AATCGAGTAACCGTAA----------CCCTC-------T-A-------TCCGC--TTTTT-TCCGCAGGCGGCACCC------GTGGAATGCAATAATGG---CA------ATGGCATCCAGAT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.........................................................................................................................................................................................................................................................................................CACCC------GTGGAATGCAATAATGG---CA------ATG..........	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......TGCTGTTG-TACTCGCCGGACT................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...........GTTG-TACTCGCCGGACTG---TGCGTGCTATC.................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..................CTCGCCGGACTG---TGCGTGC.....................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................ACCC------GTGGAATGCAATAATGG---C....................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................ATGCAATAATGG---CA------ATGGC........	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................ACTG---TGCGTGCTATCCGGTCTGAATGCG....................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.CGCATTTGCTGTTG-TACTCGCC.....................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...CATTTGCTGTTG-TACTCGCCGGACTG---TGC.........................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....TTTGCTGTTG-TACTCGCC.....................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0

droEre2

TCGCATTTGCTGTTG-TTCTCGCCGGACTG---TGCGTGCTATCCGGCCTGAATGTAATGAAAATGAAAAT-------------------------------------GGAAATGAAAATGAGA---------------------------------------------C----CGAG------TTGGTGAC-----------------AATCGAGTAACCGTAA----------CCCTC-------T-A-------TCCGC--CTTCT-CCTACAGGCGGCACCC------GTGGAATGCAATAATGG---CA------ATGGCATCCAGAT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.........................GACTG---TGCGTGCTATCCGGCCTG..........................................................................................................................................................................................................................................................................................	23	1	4.00	4	3	0	0	0	1	0	0
....ATTTGCTGTTG-TTCTCGCCG....................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	1	0	0	1	1	0	0
.CGCATTTGCTGTTG-TTCTCGCCG....................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0	0
.....TTTGCTGTTG-TTCTCGCCGGACTG---TGC.........................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0
........................GGACTG---TGCGTGCTATCCGGCC............................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
..GCATTTGCTGTTG-TTCTCGCCGG...................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
...CATTTGCTGTTG-TTCTCGCCGGACT................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0
.........................GACTG---TGCGTGCTATCCGGC.............................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
..........................ACTG---TGCGTGCTATCCGGCCTG..........................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
............................TG---TGCGTGCTATCCGGCCTG..........................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
............................TG---TGCGTGCTATCCGGCCT...........................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................ATGCAATAATGG---CA------ATGGCATCCA...	24	1	1.00	1	1	0	0	0	0	0	0
...........................CTG---TGCGTGCTATCCGGC.............................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
.............................G---TGCGTGCTATCCGGCCTGA.........................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
....ATTTGCTGTTG-TTCTCGCC.....................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0

dpe_1089

scaffold_2:6613195-6613279 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-3.9	-3.6	-3.4