ID:

dpe_1086

 Coordinate:

scaffold_2:6161646-6161796 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.2 -18.1 -18.1

Flybase annnotation

exon [dper_GLEANR_11643:4]; CDS [Dper\GL11502-cds]; intron [Dper\GL11502-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATCAGGCGTCATCTCCAGTGCGTACAGCGACAGCAGCGACGCGAGCCGAGGTAAGTGTGAATGAGGCAAATACAGAAGAAGAAGGCGTGGCCAGTGGCAGTGACAGCGAGGTAGACGAGGAGAATGAGGAACAGGGGGCAGAAGAGGAAGATCAGCAGCAGCAGGCAGAAGTAGAGGAAGTCGAAAACGACTCCGAAGATTCATCGGAATATGAAGAAGTAACAGTCACCGAAAGCAGCGATGAAGAAGAG
**************************************************....((.((..((..((..................(((.(((....((.......))..)))..)))..........................((......)).))..)).)).)).........(((.((((....))))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V111
male body		 V057
head
............................................................................................AGTGGCAGTGACAGCGAGGTA.......................................................................................................................................... 21 0 1 1.00 1 1 0 0
.....GCGTCATCTCCAGTGCGTACAGC............................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0
................................GCAGCGACGCGAGCCGAGGTAAGTGTGA............................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0
............................GACAGCAGCGACGCGAGCCGAGTCGA..................................................................................................................................................................................................... 26 3 1 1.00 1 0 1 0
.....................GTACAGCGACAGCAGCGACGCGAGCC............................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0
.........................................CGAGCCGATGGAAGTTTGA............................................................................................................................................................................................... 19 3 20 0.05 1 0 0 1

Anti-sense strand reads

TAGTCCGCAGTAGAGGTCACGCATGTCGCTGTCGTCGCTGCGCTCGGCTCCATTCACACTTACTCCGTTTATGTCTTCTTCTTCCGCACCGGTCACCGTCACTGTCGCTCCATCTGCTCCTCTTACTCCTTGTCCCCCGTCTTCTCCTTCTAGTCGTCGTCGTCCGTCTTCATCTCCTTCAGCTTTTGCTGAGGCTTCTAAGTAGCCTTATACTTCTTCATTGTCAGTGGCTTTCGTCGCTACTTCTTCTC
**************************************************....((.((..((..((..................(((.(((....((.......))..)))..)))..........................((......)).))..)).)).)).........(((.((((....))))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total V057
head
 M021
embryo
..................................TCGCTGCGCGCGGCTCCA....................................................................................................................................................................................................... 18 1 2 0.50 1 0 1
..............................................................................................................................................................GTCGTCCGTATTCATCTGGTT........................................................................ 21 3 3 0.33 1 1 0
.......CGATAGAGATCACGCATGTC................................................................................................................................................................................................................................ 20 3 4 0.25 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_2:6161596-6161846 + dpe_1086 ATCAGG------------------------CGTCATCTCCAGTGCGTAC---AGCGACAGCAGCGACGCGAGCCGAGGTAAGTGTGAATGAGGCAAATACAGAA---------------------------------GAAGAAGGCGTGGCCAGTG---GCAGTGACAGCGAGGTAGACGAGGAGAA---T---------------------GAGGAACAGGGGGCA------GAAGA-----------------------------GG---AAGATCAG----------------------------------------------------------CAGCAGCAGGCAGAAG---TAGAGGA----------------------------------------------------------------------------------------------------AGTCGAAAACGACTCCGA---------AGATTCATCGG------AATATGAAGAAGTAACAGTCACCGAAAGCAG---CGATGAAGAAGAG
dp5 3:5960640-5960890 + dps_1042 ATCAGG------------------------CGTCATCTCCAGTGCGTAC---AGCGACAGCAGCGACGCGAGCCGAGGTAAGTGTGAATGAGGCAAATACAGAA---------------------------------GAAGAAGGCGTGGCCAGTG---GCAGTGACAGCGAGGTAGACGAGGAGAA---T---------------------GAGGAACAGGGGGCA------GAAGA-----------------------------GG---AAGATCAG----------------------------------------------------------CAGCAGCAGGCAGAGG---TAGAGGA----------------------------------------------------------------------------------------------------AGTCGAAAACGACTCCGA---------AGATTCATCGG------AATATGAAGAAGTAACAGTCACCGAAAGCAG---CGATGAAGAAGAG
droWil2 scf2_1100000004510:2489658-2489926 + dwi_441 ACCAGG------------------------CAGCATCTCCAGTGCGTAC---AGCCACGACAAGCGCGCGAGCCGAGGTAAGTGTGAATGAGGCAAAT---GAA---------------------------------GAAGAAGATCTGTCCAGTGA---CAGTGGCAGCGAGGAAGAGGACGACGA---A---------------------GAGGAAGATGAT----------------------------------------------------------------------------G---CAGCAGTTGAACAGAA-----------AGAAGTAGTGCCACAGGTACAAG---AGGAGGA----------------------------------------------------------------------------------------------------AAAGGAAAATGAGGATGAAGCTTCAACATCCTCATCAGAGTATGAATACGAAGAGGTTACAGCCACTGAGAGTGA---GTCAGAAGAAGAG
droVir3 scaffold_12875:19589747-19590036 - dvi_7992 ATCAGTCGGCGACA------------GCGGCGGCATCTCCAGTGCGTACAACGACAGCGTCGACAGCGCGAGCCGAGGTAAGTGTGAATGAAACAAAT---GAA---------------------------------GAAGAAGGCGTGGCCAGTGACAACAGTGGCAGCAGCGAGACGGAGAGTGA---GACGGGAAGTGAGAGCGAGGCGGAGG---------------------AA-GAAGAGCAGCAGCAGCAGCAGCAGCAG------------------------------GCGC------------AGTTG--------GCGCAGGC---------------ACCCG-------------------------------------------------------------------------------------CTGAGGATCAAGTGGATAACGA------------------------------TTCCAGCTCCGAGTATGAATACGAGGAGGTGACAGCCAGTGAGAGTGA---GC---------AG
droMoj3 scaffold_6496:6640175-6640509 - ATCAGGCAGCGACAGCAGCAGCGGCAGCGGCGGCATCTCCAGTGCGTAC---AGCAACGGCGACAGCGCGAGCCGAGGTAAGTGTGAATGAGACAAATGAAGAAGATGAGGAAGCAGATGAGGAAGAAGAAGCAGAAGCAGAAGAGGAAGCCAGTGACAGCAGTGACAGCAGCGAAGCTGAGACTGG---GACCGAAAGTGAGAGTGAGAGTGAGAGTGA---GAC----------------AGAGCAACAGCAGCAGCAGCAGCAG------------------------------GCAG------------AACAA-----------------------------------------------------------------CAC-------CAGCTGCAGCTGCCAGAGC------------------------------------AGGTGGATAATGC------------------------------GACCAGCTCTG------AGTATGAAGAGGTGACAGTCAGTGAGAGTGA---GGAG------AGC
droGri2 scaffold_15245:17961623-17961945 + ATCAAG---CGACA------------ACAGCATCATCTTCAGTGCGTACAGCAACAACGGCGACAGCACGAGCCGAGGTAAGTGTGAATGAAACAAATGAAGAAGAAGAAGTGGCAGCAGCAGCAGAAAATGAT---GAAGTAGGTGTGGCCAGTGACGACAGTGGCAGCAGCGACATTGAGAGCGA---A---------------------ACAGAACAA-------------------------------------------------------------------GAGCG------TG---AAC---AAGTTCAAGAGCAAGA--------GTTGCAACCACAAGCAGTAG---CGGTGA---TAAAT----------------------------------------------------------------------GAAGATCAAGTGGACAACGACGACGTCGATGACGC---------------CTCTTCCTCTGAATATGAGTATGAAGAGGTGACAGCGAGTGAGAGCGA---AG---------AG
droAna3 scaffold_13266:17449042-17449349 - dan_2079 ATCAGG------------------------CGGCGTCTCCAGTGCGTAACAGTGCAGCAACCGCGACGCGGGCCGAGGTAAGTGTGAATGAGACAAATACAGAA---------------------------------GAAGAAGCCCTGGCCAGCGAAGGCAGTGATAGCGAAGAGGAGGAGGAAGA---A---------------------ACAGAAGAGTCT-------------------------------------------------------------GAAGAAAG------TG---AAG---TAGAACAGGAG--------------------------------GCAG------------GTGTGGCGCCGCAGGAC-------ACGCTTAATGTTCCAGAAG---CTAGCCAGGATGCCTCATCGGGTTCCGAGGTTACAGAAGAGGAGGA------------------------------ATCCTCTTCCG------AATACGAAGAAGAAACAGCAGAAGAAAGCGA---AGAAGAGGAAGAA
droBip1 scf7180000396735:710631-710938 - ATCAGG------------------------CGGCGTCTCCAGTGCGTAACAGTGCAGCAACCGCGACGCGGGCCGAGGTAAGTGTGAATGAGACAAATACAGAA---------------------------------GAAGAAGCCATAGCCAGCGAAAGCAGTGACAGCGAAGAGGAGGAGGAAGA---A---------------------ACAGAAGAGTCT-------------------------------------------------------------GAAGAAAG------TG---AAG---TAGAACAGGAG--------------------------------GCAG------------AAGTAAGGCCACAGGAC-------CAGCTTGATGTGCCAGAAG---CTAGCCAGGATGCCTCGTCGGCATCCGAGGTAACAGAGGAGGAAGA------------------------------ATCCTCTTCTG------AATACGAAGAAGAAACAGCAACCGAAAGCGA---AGAAGAAGGGGAG
droKik1 scf7180000302682:642206-642510 + CTCAGG------------------------CGGCGTCTCCAGTGCGTAATTCGGCGGCAGCGGCAACGCGAGCTGAGGTAAGTGTGAATGAGGCAAATACAGAA---------------------------------GAAGAAGGCGTGGCCAGTGACAGCAGTGACAGCGAGGAAGAGGAGGAGGA---T---------------------GATGA------GACT------GAGGA-----------------------------GG---AAGAT--------------GA------TG---------------AA--------GTAGAAGA---------------GTCTCCTG------------AGGTC-CTGCCAGAGTTGGCCCAAGGTCTTAGCCCCCCAGAAGTGCCT---GCAGAACCCACATC---CTCTGAACAAACCGAGGAAGAAGA------------------------------GTCTTCCTCGG------AGTATGAAGAAGTAACAGCCACTGAAAGCGA---AG---------AG
droFic1 scf7180000454044:681139-681515 + ATCAGG------------------------CGGCGTCTCCAGTGCGTAACAGTGCCGCATCGACGACGCGAGCCGAGGTAAGTGTGAATGAGGCAAATACAGAA---------------------------------GAAGAAGGCGTGGCCAATGACAGCAGTGACAGCGAAGAAGAAGTTGAAGA---G---GAAGGGGAGGAGGAGGAGGAGGAGG----------------------AGGAGGAGGAGGAGGAGGAGGAGGAG-G---AAGA--AGAATCAGCAGGGGA------AG---GGG---TAGAACAG--------GTGGAGGA---------------ACCTTCAGTGGGTGTGGTAGAAGAGGCTTCAAGAGAA-------GTTCTTAATCTACCAGAAAAGGCT---TCGAAAGCCACTTC---TTCGAAAGTTCCCGAAGAAGAAGA------------------------------ATACTCTTCCG------AATACGAGGAAGTAACGGCCAACGAAGAGAGTGAAGAAGA---AGAA
droEle1 scf7180000491228:23783-24078 - ACCAGG------------------------CGGCGTCTCCAGTGCGTAATAGTGCGGCATCTGCGACGCGGGCTGAGGTAAGTGTGAATGAGGCAAATACAGAA---------------------------------GAAGAAGGCGTGGCCAGTGACTGCAGTGACGGCGAAGAGGAAGAAGAAGA---G---------------------GAAGA--------------------------------------------------------------G-----------GAGGG--------------------------------GGAAGA---------------ATCTGTAGAGGCGGAAATCGAAGAGGCTCCCAGGGAA-------TCTCTTAACCTTCCAGAGGAATCT---CTGCAAGCAACCTC---TTCCGAAGAAACCGAAGAGGAAGA------------------------------ATCCTCATCGG------AATACGAAGAAGAAACAGCCACCGAAAGTGA---AGAG------GAT
droRho1 scf7180000779618:14865-15163 + ACCAGG------------------------CAGCGTCTCCAGTGCGTAATAGTGCGGCGACTACGACGCGAGCTGAGGTAAGTGTGAATGAGGCAAATACAGAA---------------------------------GAAGAAGGCGTGGCCAGTGACAGCAGTGACAGCGAAGAAGAGGGGGAGGA---G---------------------GAGGAGGAGGAT----------------------------------------------------------------------------G------------AGGAG--------GGGGAGGA---------------ATCCGTAC------------AGGAAGCTACCGGAAAT-------GTGCTTAACCTTCCAGAAGAAGCT---CTTCAAGCTACATC---TTCCGAAGAAACGGAGGAGGAAGA------------------------------GTCCTCTTCCG------AATACGAAGAAGTCACAGCCACCGAGAGTGA---AGAAGAAGAAGAG
droBia1 scf7180000302292:1478819-1479105 - ACCAGG------------------------CGGCGTCTCCAGTGCGTAACAGTGCAGCCTCTACGACGCGAGCCGAGGTAAGTGTGAATGAGGCAAATACAGAA---------------------------------GAAGAAGGCGTGGCCAGTGAAAGCAGTGACAGCGAGGAAGAGGAGGAGGA---G---------------------GAGG----------------------------------------------------------------------------CGGGGGGAG------------AGCAA--------CCGGAAGA---------------ATCTGTTC------------AAGTGGTTCTACAGGAT-------GTGCTTAGTCTA---GGAGAGCCT---CAGCAGCCCACGTC---TTCCGAAGAAACGGAGGAGGAAGA------------------------------GTCCTCCTCCG------AGTACGAGGAAGTAACAGCTAGCGAAACTGA---AG---------AG
droTak1 scf7180000415991:355332-355651 + ATCAGG------------------------CGGCGTCTCCAGTGCGTAACAGTGCGGCCTCAACGACGCGAGCCGAGGTAAGTGTGAATGAGGCAAATACAGAA---------------------------------GAAGAAGGCGTGGCCAGTGAGAGCAGTGACAGCGAAGAAGAGGAGGAGGA---G---------------------GAGGATGAGGAGGAA------GAATC-----------------------------GG---TAG---AG-----------GAGGGGGCAG------------AACAA--------GCTGAAGA---------------ATCTGTAG------------AAGGGGCTCCTAGGGAA-------TTGCTTAATCCCCCAGAAGAATCT---CTGCAGCCCACGTC---TTCCGAAGTAACAGAGGAGGAAGA------------------------------ATCGTCCTCCG------AGTATGAAGAAGTAACAGCCACCGAAAGTGA---GGAAGAA---CAG
droEug1 scf7180000409663:443229-443533 - ACCAGG------------------------CAGCGTCTCCAGTGCGTAATAGTGCCGCAGCTACGACGCGAGCCGAGGTAAGTGTGAATGAGGCAAATACAGAA---------------------------------GAAGAAGGCGTGGCCAGTGAAAGCAGTGACAGCGAAGAAGAGGAGGAGGA---A---------------------GAAGAAGAGGAT-------------------------------------------------------------------GAGGGTCCAG------------AACAA--------GCAGAAGA---------------ATTTGCAG------------AAGTGGCTTCTAGGGAC-------CGGCTTAACCCACCGGAGGAATCC---CTGCAACCGACCTC---TTCCGAAGTAACGGAGGAGGAGGA------------------------------GTCCTCTTCTG------AGTACGAAGAAGTCACAGCCACCGAAAGTGA---AGAAGAG---CAG
dm3 chr2R:14885876-14886207 + ACCAGG------------------------CGGCGTCCCCAGTGCGTAATAGTGCGGCATCCACGACGCGAGCTGAGGTAAGTGTGAATGAGGCAAATACAGAA---------------------------------GAAGAAGGCGTGGCCAGTGAAAGCAGTGACAGCGAAGAAGATGAGGAAGT---T---------------------GAAGATGAAGATGAA---GAAGAAGA-----------------------------GG---TAG---AC-----------GAGGAGGAGG------------AACAA--------GTAGAAGA---------------ATCTGTAGAAGA------AGAAGAGGCTCCCAGGGAA-------TTGCTGAACCTACCAGAGGAAGCT---CTGCAACCGACCTC---ATCTGAAGTTACAGAGGAGGAAGA------------------------------ATCCTCTTCCG------AATACGAAGAAGTAACGGCCACTGAAAGTGA---AGAAGAGCAGGAG
droSim2 2r:15534852-15535174 + dsi_25601 ACCAGG------------------------CGGCGTCCCCAGTGCGTAATAGTGCGGCATCCACGACGCGAGCAGAGGTAAGTGTGAATGAGGCAAATACAGAA---------------------------------GAAGAAGGCGTGGCCAGTGAAAGCAGTGACAGCGAAGAAGAGGAGGAGGA---G---------------------GAAGAAGAAGAA---------GATGA-----------------------------GG---TGGAGGAG-----------GAGGAGGAAG------------AACAA--------GTAGAGGA---------------ATCTGTAG------------AAGGGACTCCTAGGGAA-------TTGCTTAACCTACCAGAGGAAGCT---CTGCAACCGACCTC---GTCTGAAGTTACAGAGGAGGAAGA------------------------------ATCCTCTTCCG------AATACGAAGAAGTAACAGCCACTGAAAGTGA---AGAAGAGCAGGAG
droSec2 scaffold_1:12392163-12392488 + ACCAGG------------------------CGGCGTCCCCAGTGCGTAATAGTGCGACATCCACGACGCGAGCAGAGGTAAGTGTGAATGAGGCAAATACAGAA---------------------------------GAAGAAAGCGTGGCCAGTGAAAGCAGTGACAGCGAAGAAGAGGAGGAGGA---G---------------------GAAGAAGAAGAA---------GAAGA-----------------------------GGTGGAGGAGGAG-----------GAGGAGGAAG------------AACAA--------GTAGAGGA---------------ATCTGTAG------------AAGGGACTCCTAGGGAA-------TTGCTTAACCTACCAGAGGAAGCT---CTGCAGCCGACCTC---TTCTGAAGTTACAGAGGAGGAAGA------------------------------ATCCTCTTCCG------AATACGAAGAAGTAACAGCCACTGAAAGTGA---AGAAGAGCAGGAG
droYak3 2R:14307770-14308113 - dya_571 ACCAGG------------------------CGGCGTCTCCAGTGCGTAGTAGTGCGGCATCCACGACGCGAGCCGAGGTAAGTGTGAATGAGGCAAATACAGAA---------------------------------GAAGAAGGCGTGGCCAGTGAAAGCAGTGACAGCGATGAAGAGGAGGAGGA---T---------------------GTAGAGGAGGAAGATGAAGAAGAAGA-CGAGGAGGAGGAAGATGATGAG----------------GAG-----------GAGGGTGAACAACAAG---TAGAACAA-----------------------------------GTAG------------AAGAAACGGGTAGGGAA-------TTGCTTAACCTCCCGGAAGAGTCA---CTGCAACCGACCTC---TTCTGAAGCAACAGAGGAGGAAGA------------------------------ATCCTCTTCCG------AGTACGAAGAGGTAACAGCCACTGAGAGTGA---AGACGAGCAGGAG
droEre2 scaffold_4845:9081439-9081776 + der_1081 ACCAGG------------------------CGGCGTCTCCAGTGCGTAATAGTGCGGCAACTACGACGCGAGCCGAGGTAAGTGTGAATGAGGCAAATACAGAA---------------------------------GAAGAAGGCGTGGCCAGTGAAAGCAGTGACAGCGAGGAAGAGGATGAGGAGGTG------GAGGAGGAGGAGGAAGAAGACG----------------------AAGAGGAAGACGAGGATGAG----------------GAG-----------GAGGGGGAAG------------AACAA--------GCGGAGGA---------------ATCTGTAG------------AAGATACGGGTAGGGAA-------CTGCTTAACCTCCCAGAAGAAGCT---CTGCAGCCGACCTC---TTCTGAAGTCACAGAGGAGGAAGA------------------------------ATCCTCATCGG------AGTACGAAGAGGTGACAGCCACTGAGAGTGA---AGAA------GAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
ATCAGG------------------------CGTCATCTCCAGTGCGTAC---AGCGACAGCAGCGACGCGAGCCGAGGTAAGTGTGAATGAGGCAAATACAGAA---------------------------------GAAGAAGGCGTGGCCAGTG---GCAGTGACAGCGAGGTAGACGAGGAGAA---T---------------------GAGGAACAGGGGGCA------GAAGA-----------------------------GG---AAGATCAG----------------------------------------------------------CAGCAGCAGGCAGAAG---TAGAGGA----------------------------------------------------------------------------------------------------AGTCGAAAACGACTCCGA---------AGATTCATCGG------AATATGAAGAAGTAACAGTCACCGAAAGCAG---CGATGAAGAAGAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................AGTG---GCAGTGACAGCGAGGTA...........................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.....G------------------------CGTCATCTCCAGTGCGTAC---AGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
...........................................................GCAGCGACGCGAGCCGAGGTAAGTGTGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
.............................................GTAC---AGCGACAGCAGCGACGCGAGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
dp5
ATCAGG------------------------CGTCATCTCCAGTGCGTAC---AGCGACAGCAGCGACGCGAGCCGAGGTAAGTGTGAATGAGGCAAATACAGAA---------------------------------GAAGAAGGCGTGGCCAGTG---GCAGTGACAGCGAGGTAGACGAGGAGAA---T---------------------GAGGAACAGGGGGCA------GAAGA-----------------------------GG---AAGATCAG----------------------------------------------------------CAGCAGCAGGCAGAGG---TAGAGGA----------------------------------------------------------------------------------------------------AGTCGAAAACGACTCCGA---------AGATTCATCGG------AATATGAAGAAGTAACAGTCACCGAAAGCAG---CGATGAAGAAGAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................C---AGCGACAGCAGCGACGCGAGCCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
................................................C---AGCGACAGCAGCGACGCGAGCCGAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000001000
.....................................................................................................GAA---------------------------------GAAGAAGGCGTGGCCAGTG---GCA.........................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.............................................................................................................................................................................GTAGACGAGGAGAA---T---------------------GAGGAAC................................................................................................................................................................................................................................................................................................................................................2211.0010000000001
......................................................................................AATGAGGCAAATACAGAA---------------------------------GAAGAAGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
.........................................................CAGCAGCGACGCGAGCCGAGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000001000
.........................................GTGCGTAC---AGCGACAGCAGCGACGCGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010001000000
droWil2
ACCAGG------------------------CAGCATCTCCAGTGCGTAC---AGCCACGACAAGCGCGCGAGCCGAGGTAAGTGTGAATGAGGCAAAT---GAA---------------------------------GAAGAAGATCTGTCCAGTGA---CAGTGGCAGCGAGGAAGAGGACGACGA---A---------------------GAGGAAGATGAT----------------------------------------------------------------------------G---CAGCAGTTGAACAGAA-----------AGAAGTAGTGCCACAGGTACAAG---AGGAGGA----------------------------------------------------------------------------------------------------AAAGGAAAATGAGGATGAAGCTTCAACATCCTCATCAGAGTATGAATACGAAGAGGTTACAGCCACTGAGAGTGA---GTCAGAAGAAGAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................AGCGAGGAAGAGGACGACGA---.............................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.............................................................................................................................................................................................................................................................................................................................................AAGTAGTGCCACAGGTAC............................................................................................................................................................................................................1811.00101000
droVir3
ATCAGTCGGCGACA------------GCGGCGGCATCTCCAGTGCGTACAACGACAGCGTCGACAGCGCGAGCCGAGGTAAGTGTGAATGAAACAAAT---GAA---------------------------------GAAGAAGGCGTGGCCAGTGACAACAGTGGCAGCAGCGAGACGGAGAGTGA---GACGGGAAGTGAGAGCGAGGCGGAGG---------------------AA-GAAGAGCAGCAGCAGCAGCAGCAGCAG------------------------------GCGC------------AGTTG--------GCGCAGGC---------------ACCCG-------------------------------------------------------------------------------------CTGAGGATCAAGTGGATAACGA------------------------------TTCCAGCTCCGAGTATGAATACGAGGAGGTGACAGCCAGTGAGAGTGA---GC---------AGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................ACAGCGTCGACAGCGCGAGCCGAGTCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000010000000000000000000000000000000000000000
.........................................GTGCGTACAACGACAGCGTCGACAGCGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
...AGTCGGCGACA------------GCGGCGGCATCTCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.TCAGTCGGCGACA------------GCGGCGGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000000000000000000000000000000000000000000000000000000000000
....................................................GACAGCGTCGACAGCGCGAGCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000100000000000000000000000000000000000000000000000
....GTCGGCGACA------------GCGGCGGCATCTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................TG--------GCGCAGGC---------------ACCCG-------------------------------------------------------------------------------------CTGAGGAT............................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000010
.....TCGGCGACA------------GCGGCGGCATCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000001
..................................................ACGACAGCGTCGACAGCGCGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000010000000000000000000000000000000000000000
.........CGACA------------GCGGCGGCATCTCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000100
ATCAGTCGGCGACA------------GCGGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.........................................GTGCGTACAACGACAGCGTCGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
..................................................ACGACAGCGTCGACAGCGCGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
.......................................................AGCGTCGACAGCGCGAGCCGAGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
......................................................CAGCGTCGACAGCGCGAGCCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000010000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACGA------------------------------TTCCAGCTC.......................................................1520.501000000000000000000000000000000000000000000000000000000000010000
.......................................................................................................................................................................................................................G---------------------AA-GAAGAGCAGCAGCAGC...........................................................................................................................................................................................................................................................................................................1930.331000000000000000010000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................AA-GAAGAGCAGCAGCAGCA..........................................................................................................................................................................................................................................................................................................1950.201000000000000000000000010000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAGCAGCAG------------------------------GCGC------------..................................................................................................................................................................................................................................................26120.081000000000000000000000000000000000000000000000000000000000000001
..........................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCAG------------------------------GCGC------------..................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000000000000000000000000000000010
droMoj3
ATCAGGCAGCGACAGCAGCAGCGGCAGCGGCGGCATCTCCAGTGCGTAC---AGCAACGGCGACAGCGCGAGCCGAGGTAAGTGTGAATGAGACAAATGAAGAAGATGAGGAAGCAGATGAGGAAGAAGAAGCAGAAGCAGAAGAGGAAGCCAGTGACAGCAGTGACAGCAGCGAAGCTGAGACTGG---GACCGAAAGTGAGAGTGAGAGTGAGAGTGA---GAC----------------AGAGCAACAGCAGCAGCAGCAGCAG------------------------------GCAG------------AACAA-----------------------------------------------------------------CAC-------CAGCTGCAGCTGCCAGAGC------------------------------------AGGTGGATAATGC------------------------------GACCAGCTCTG------AGTATGAAGAGGTGACAGTCAGTGAGAGTGA---GGAG------AGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................GGCATCTCCAGTGCGTAC---AGCAACGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
................AGCAGCGGCAGCGGCGGCAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...................AGCGGCAGCGGCGGCATCTCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
...............................................AC---AGCAACGGCGACAGCGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
............................................CGTAC---AGCAACGGCGACAGCGCGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100
...............................................................................................................................................................................................................................GAC----------------AGAGCAACAGCAGCAGCAGCA....................................................................................................................................................................................................................................................................................................2430.331000010
....................................................................................................................................................................................................................................................AGCAACAGCAGCAGCAGCAGCAG------------------------------GC................................................................................................................................................................................................................................................................25100.101000010
droGri2
ATCAAG---CGACA------------ACAGCATCATCTTCAGTGCGTACAGCAACAACGGCGACAGCACGAGCCGAGGTAAGTGTGAATGAAACAAATGAAGAAGAAGAAGTGGCAGCAGCAGCAGAAAATGAT---GAAGTAGGTGTGGCCAGTGACGACAGTGGCAGCAGCGACATTGAGAGCGA---A---------------------ACAGAACAA-------------------------------------------------------------------GAGCG------TG---AAC---AAGTTCAAGAGCAAGA--------GTTGCAACCACAAGCAGTAG---CGGTGA---TAAAT----------------------------------------------------------------------GAAGATCAAGTGGACAACGACGACGTCGATGACGC---------------CTCTTCCTCTGAATATGAGTATGAAGAGGTGACAGCGAGTGAGAGCGA---AG---------AGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.....................................................ACAACGGCGACAGCACGAGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110
...........ACA------------ACAGCATCATCTTCAGTGCGTACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00110
droAna3
ATCAGG------------------------CGGCGTCTCCAGTGCGTAACAGTGCAGCAACCGCGACGCGGGCCGAGGTAAGTGTGAATGAGACAAATACAGAA---------------------------------GAAGAAGCCCTGGCCAGCGAAGGCAGTGATAGCGAAGAGGAGGAGGAAGA---A---------------------ACAGAAGAGTCT-------------------------------------------------------------GAAGAAAG------TG---AAG---TAGAACAGGAG--------------------------------GCAG------------GTGTGGCGCCGCAGGAC-------ACGCTTAATGTTCCAGAAG---CTAGCCAGGATGCCTCATCGGGTTCCGAGGTTACAGAAGAGGAGGA------------------------------ATCCTCTTCCG------AATACGAAGAAGAAACAGCAGAAGAAAGCGA---AGAAGAGGAAGAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
ATCAGG------------------------CGGCGTCTCCAGTGCGTAACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
................................................................GACGCGGGCCGAGGTAAGTGTGAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
droBip1
ATCAGG------------------------CGGCGTCTCCAGTGCGTAACAGTGCAGCAACCGCGACGCGGGCCGAGGTAAGTGTGAATGAGACAAATACAGAA---------------------------------GAAGAAGCCATAGCCAGCGAAAGCAGTGACAGCGAAGAGGAGGAGGAAGA---A---------------------ACAGAAGAGTCT-------------------------------------------------------------GAAGAAAG------TG---AAG---TAGAACAGGAG--------------------------------GCAG------------AAGTAAGGCCACAGGAC-------CAGCTTGATGTGCCAGAAG---CTAGCCAGGATGCCTCGTCGGCATCCGAGGTAACAGAGGAGGAAGA------------------------------ATCCTCTTCTG------AATACGAAGAAGAAACAGCAACCGAAAGCGA---AGAAGAAGGGGAGSizeHit CountTotal NormTotal
No Reads
droKik1
CTCAGG------------------------CGGCGTCTCCAGTGCGTAATTCGGCGGCAGCGGCAACGCGAGCTGAGGTAAGTGTGAATGAGGCAAATACAGAA---------------------------------GAAGAAGGCGTGGCCAGTGACAGCAGTGACAGCGAGGAAGAGGAGGAGGA---T---------------------GATGA------GACT------GAGGA-----------------------------GG---AAGAT--------------GA------TG---------------AA--------GTAGAAGA---------------GTCTCCTG------------AGGTC-CTGCCAGAGTTGGCCCAAGGTCTTAGCCCCCCAGAAGTGCCT---GCAGAACCCACATC---CTCTGAACAAACCGAGGAAGAAGA------------------------------GTCTTCCTCGG------AGTATGAAGAAGTAACAGCCACTGAAAGCGA---AG---------AGSizeHit CountTotal NormTotal
No Reads
droFic1
ATCAGG------------------------CGGCGTCTCCAGTGCGTAACAGTGCCGCATCGACGACGCGAGCCGAGGTAAGTGTGAATGAGGCAAATACAGAA---------------------------------GAAGAAGGCGTGGCCAATGACAGCAGTGACAGCGAAGAAGAAGTTGAAGA---G---GAAGGGGAGGAGGAGGAGGAGGAGG----------------------AGGAGGAGGAGGAGGAGGAGGAGGAG-G---AAGA--AGAATCAGCAGGGGA------AG---GGG---TAGAACAG--------GTGGAGGA---------------ACCTTCAGTGGGTGTGGTAGAAGAGGCTTCAAGAGAA-------GTTCTTAATCTACCAGAAAAGGCT---TCGAAAGCCACTTC---TTCGAAAGTTCCCGAAGAAGAAGA------------------------------ATACTCTTCCG------AATACGAGGAAGTAACGGCCAACGAAGAGAGTGAAGAAGA---AGAASizeHit CountTotal NormTotal
No Reads
droEle1
ACCAGG------------------------CGGCGTCTCCAGTGCGTAATAGTGCGGCATCTGCGACGCGGGCTGAGGTAAGTGTGAATGAGGCAAATACAGAA---------------------------------GAAGAAGGCGTGGCCAGTGACTGCAGTGACGGCGAAGAGGAAGAAGAAGA---G---------------------GAAGA--------------------------------------------------------------G-----------GAGGG--------------------------------GGAAGA---------------ATCTGTAGAGGCGGAAATCGAAGAGGCTCCCAGGGAA-------TCTCTTAACCTTCCAGAGGAATCT---CTGCAAGCAACCTC---TTCCGAAGAAACCGAAGAGGAAGA------------------------------ATCCTCATCGG------AATACGAAGAAGAAACAGCCACCGAAAGTGA---AGAG------GATSizeHit CountTotal NormTotal
No Reads
droRho1
ACCAGG------------------------CAGCGTCTCCAGTGCGTAATAGTGCGGCGACTACGACGCGAGCTGAGGTAAGTGTGAATGAGGCAAATACAGAA---------------------------------GAAGAAGGCGTGGCCAGTGACAGCAGTGACAGCGAAGAAGAGGGGGAGGA---G---------------------GAGGAGGAGGAT----------------------------------------------------------------------------G------------AGGAG--------GGGGAGGA---------------ATCCGTAC------------AGGAAGCTACCGGAAAT-------GTGCTTAACCTTCCAGAAGAAGCT---CTTCAAGCTACATC---TTCCGAAGAAACGGAGGAGGAAGA------------------------------GTCCTCTTCCG------AATACGAAGAAGTCACAGCCACCGAGAGTGA---AGAAGAAGAAGAGSizeHit CountTotal NormTotal
No Reads
droBia1
ACCAGG------------------------CGGCGTCTCCAGTGCGTAACAGTGCAGCCTCTACGACGCGAGCCGAGGTAAGTGTGAATGAGGCAAATACAGAA---------------------------------GAAGAAGGCGTGGCCAGTGAAAGCAGTGACAGCGAGGAAGAGGAGGAGGA---G---------------------GAGG----------------------------------------------------------------------------CGGGGGGAG------------AGCAA--------CCGGAAGA---------------ATCTGTTC------------AAGTGGTTCTACAGGAT-------GTGCTTAGTCTA---GGAGAGCCT---CAGCAGCCCACGTC---TTCCGAAGAAACGGAGGAGGAAGA------------------------------GTCCTCCTCCG------AGTACGAGGAAGTAACAGCTAGCGAAACTGA---AG---------AGSizeHit CountTotal NormTotal
No Reads
droTak1
ATCAGG------------------------CGGCGTCTCCAGTGCGTAACAGTGCGGCCTCAACGACGCGAGCCGAGGTAAGTGTGAATGAGGCAAATACAGAA---------------------------------GAAGAAGGCGTGGCCAGTGAGAGCAGTGACAGCGAAGAAGAGGAGGAGGA---G---------------------GAGGATGAGGAGGAA------GAATC-----------------------------GG---TAG---AG-----------GAGGGGGCAG------------AACAA--------GCTGAAGA---------------ATCTGTAG------------AAGGGGCTCCTAGGGAA-------TTGCTTAATCCCCCAGAAGAATCT---CTGCAGCCCACGTC---TTCCGAAGTAACAGAGGAGGAAGA------------------------------ATCGTCCTCCG------AGTATGAAGAAGTAACAGCCACCGAAAGTGA---GGAAGAA---CAGSizeHit CountTotal NormTotal
No Reads
droEug1
ACCAGG------------------------CAGCGTCTCCAGTGCGTAATAGTGCCGCAGCTACGACGCGAGCCGAGGTAAGTGTGAATGAGGCAAATACAGAA---------------------------------GAAGAAGGCGTGGCCAGTGAAAGCAGTGACAGCGAAGAAGAGGAGGAGGA---A---------------------GAAGAAGAGGAT-------------------------------------------------------------------GAGGGTCCAG------------AACAA--------GCAGAAGA---------------ATTTGCAG------------AAGTGGCTTCTAGGGAC-------CGGCTTAACCCACCGGAGGAATCC---CTGCAACCGACCTC---TTCCGAAGTAACGGAGGAGGAGGA------------------------------GTCCTCTTCTG------AGTACGAAGAAGTCACAGCCACCGAAAGTGA---AGAAGAG---CAGSizeHit CountTotal NormTotal
No Reads
dm3
ACCAGG------------------------CGGCGTCCCCAGTGCGTAATAGTGCGGCATCCACGACGCGAGCTGAGGTAAGTGTGAATGAGGCAAATACAGAA---------------------------------GAAGAAGGCGTGGCCAGTGAAAGCAGTGACAGCGAAGAAGATGAGGAAGT---T---------------------GAAGATGAAGATGAA---GAAGAAGA-----------------------------GG---TAG---AC-----------GAGGAGGAGG------------AACAA--------GTAGAAGA---------------ATCTGTAGAAGA------AGAAGAGGCTCCCAGGGAA-------TTGCTGAACCTACCAGAGGAAGCT---CTGCAACCGACCTC---ATCTGAAGTTACAGAGGAGGAAGA------------------------------ATCCTCTTCCG------AATACGAAGAAGTAACGGCCACTGAAAGTGA---AGAAGAGCAGGAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................CCAGTGCGTAATAGTGCGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................GTGCGTAATAGTGCGGCATCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................GG---TAG---AC-----------GAGGAGGAGG------------AACAA--------GTAGAA...............................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................AGA---------------ATCTGTAGAAGA------AGAAGA......................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................GGCATCCACGACGCGAGCTGAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................AGAAGGCGTGGCCAGTGAAAGCAGTGA.....................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................GAGGCTCCCAGGGAA-------TTGC..............................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................GTGCGTAATAGTGCGGCATCCACGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAACGGCCACTGAAAGTGA---AG...........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................A-----------------------------GG---TAG---AC-----------GAGGAGGAGG------------AACAA--------GTAGA................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................CCCAGGGAA-------TTGCTGAAC.........................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................AGAAGAGGCTCCCAGGGAA-------T.................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................A-----------------------------GG---TAG---AC-----------GAGGAGGAGG------------AAC...............................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..........................................................................................................................................AAGAAGGCGTGGCCAGTGAAAGC..........................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
.........................................................................................................................................................................................GT---T---------------------GAAGATGAAGATGAA---GAAGAAGA-----------------------------GG---...........................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTAACGGCCACTGAAAGTGA---AGAAG........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................AGAA---------------------------------GAAGAAGGCGTGGC....................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................GTGCGTAATAGTGCGGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.................................................................................................................................................CGTGGCCAGTGAAAGCAGTGA.....................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................AGTGCGTAATAGTGCGGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................AGAAGA---------------ATCTGTAGAAGA------............................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..............................................................................................................................................................................................T---------------------GAAGATGAAGATGAA---GAA..................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TAGAAGA---------------ATCTGTAGAAGA------............................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ACCAGG------------------------CGGCGTCCCCAGTGCGTAATAGTGCGGCATCCACGACGCGAGCAGAGGTAAGTGTGAATGAGGCAAATACAGAA---------------------------------GAAGAAGGCGTGGCCAGTGAAAGCAGTGACAGCGAAGAAGAGGAGGAGGA---G---------------------GAAGAAGAAGAA---------GATGA-----------------------------GG---TGGAGGAG-----------GAGGAGGAAG------------AACAA--------GTAGAGGA---------------ATCTGTAG------------AAGGGACTCCTAGGGAA-------TTGCTTAACCTACCAGAGGAAGCT---CTGCAACCGACCTC---GTCTGAAGTTACAGAGGAGGAAGA------------------------------ATCCTCTTCCG------AATACGAAGAAGTAACAGCCACTGAAAGTGA---AGAAGAGCAGGAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................GCGTGGCCAGTGAAAGCAGTGACAG..................................................................................................................................................................................................................................................................................................................................................................................................2512.00200200000000000000
...................................................................................................................................................................................................................................................................................................GAGGAGGAAG------------AACAA--------GTAGAGGA---------------AT............................................................................................................................................................................................................2511.00100000000000001000
...........................................................................................................................................................................................................................................................................................................................CAA--------GTAGAGGA---------------ATCTGTAG------------AAGGGA....................................................................................................................................................................................2511.00100100000000000000
............................................................................................................................................................................................................................................GA-----------------------------GG---TGGAGGAG-----------GAGGAGGAAG------------..................................................................................................................................................................................................................................................2220.50100000000000001000
.............................................................................................................................................................................................................................................A-----------------------------GG---TGGAGGAG-----------GAGGAGGAA...............................................................................................................................................................................................................................................................2030.33100000000000001000
............................................................................................................................................................................................................................................................................G---TGGAGGAG-----------GAGGAGGAAG------------..................................................................................................................................................................................................................................................1930.33100000000000001000
............................................................................................................................................................................................................................................GA-----------------------------GG---TGGAGGAG-----------GAGGAGGAA...............................................................................................................................................................................................................................................................2130.33100000000000001000
...............................................................................................................................................................................AGAGGAGGAGGA---G---------------------GAA....................................................................................................................................................................................................................................................................................................................................................16110.09100000000001000000
droSec2
ACCAGG------------------------CGGCGTCCCCAGTGCGTAATAGTGCGACATCCACGACGCGAGCAGAGGTAAGTGTGAATGAGGCAAATACAGAA---------------------------------GAAGAAAGCGTGGCCAGTGAAAGCAGTGACAGCGAAGAAGAGGAGGAGGA---G---------------------GAAGAAGAAGAA---------GAAGA-----------------------------GGTGGAGGAGGAG-----------GAGGAGGAAG------------AACAA--------GTAGAGGA---------------ATCTGTAG------------AAGGGACTCCTAGGGAA-------TTGCTTAACCTACCAGAGGAAGCT---CTGCAGCCGACCTC---TTCTGAAGTTACAGAGGAGGAAGA------------------------------ATCCTCTTCCG------AATACGAAGAAGTAACAGCCACTGAAAGTGA---AGAAGAGCAGGAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................GA-----------------------------GGTGGAGGAGGAG-----------GAGGAGGA................................................................................................................................................................................................................................................................2323.0060501
............................................................................................................................................................................................................................................GA-----------------------------GGTGGAGGAGGAG-----------GAGGAGGAA...............................................................................................................................................................................................................................................................2412.0020200
........................................................................................................................................................................................GGA---G---------------------GAAGAAGAAGAA---------GAAGA-----------------------------GGTGG...........................................................................................................................................................................................................................................................................................2611.0010100
......................................................CGACATCCACGACGCGAGCAGAGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000
..........................................................................................................................................................................................................................................AAGA-----------------------------GGTGGAGGAGGAG-----------GAGGAGGAAG------------..................................................................................................................................................................................................................................................2711.0010100
............................................................................................................................................................................................................................................GA-----------------------------GGTGGAGGAGGAG-----------GAGGAGGAAG------------..................................................................................................................................................................................................................................................2511.0010100
...............................................................................................................................................................................AGAGGAGGAGGA---G---------------------GAAGA..................................................................................................................................................................................................................................................................................................................................................1860.5031200
.........................................................................................................................................................................................GA---G---------------------GAAGAAGAAGAA---------GAAGA-----------------------------................................................................................................................................................................................................................................................................................................2020.5011000
..........................................................................................................................................................................................................................................AAGA-----------------------------GGTGGAGGAGGAG-----------GA......................................................................................................................................................................................................................................................................1920.5010100
............................................................................................................................................................................................................................................GA-----------------------------GGTGGAGGAGGAG-----------GAGGA...................................................................................................................................................................................................................................................................2060.3320200
...........................................................................................................................................................................AAGAAGAGGAGGAGGA---G---------------------GAAGT..................................................................................................................................................................................................................................................................................................................................................2230.3310001
................................................................................................................................................................................GAGGAGGAGGA---G---------------------GAAGAAGA...............................................................................................................................................................................................................................................................................................................................................2050.2010100
.............................................................................................................................................................................................................................................A-----------------------------GGTGGAGGAGGAG-----------GAGGAG..................................................................................................................................................................................................................................................................2050.2010001
..............................................................................................................................................................................AAGAGGAGGAGGA---G---------------------GAAGA..................................................................................................................................................................................................................................................................................................................................................1960.1710100
.............................................................................................................................................................................................................................................A-----------------------------GGTGGAGGAGGAG-----------GAGG....................................................................................................................................................................................................................................................................18120.1720002
.............................................................................................................................................................................................................................................A-----------------------------GGTGGAGGAGGAG-----------GAGGA...................................................................................................................................................................................................................................................................1980.1310001
..........................................................................................................................................................................GAAGAAGAGGAGGAGGA---G---------------------G......................................................................................................................................................................................................................................................................................................................................................1990.1110100
...............................................................................................................................................................................................................................................................................GAGGAGGAG-----------GAGGAGGAAG------------..................................................................................................................................................................................................................................................19140.0711000
droYak3
ACCAGG------------------------CGGCGTCTCCAGTGCGTAGTAGTGCGGCATCCACGACGCGAGCCGAGGTAAGTGTGAATGAGGCAAATACAGAA---------------------------------GAAGAAGGCGTGGCCAGTGAAAGCAGTGACAGCGATGAAGAGGAGGAGGA---T---------------------GTAGAGGAGGAAGATGAAGAAGAAGA-CGAGGAGGAGGAAGATGATGAG----------------GAG-----------GAGGGTGAACAACAAG---TAGAACAA-----------------------------------GTAG------------AAGAAACGGGTAGGGAA-------TTGCTTAACCTCCCGGAAGAGTCA---CTGCAACCGACCTC---TTCTGAAGCAACAGAGGAGGAAGA------------------------------ATCCTCTTCCG------AGTACGAAGAGGTAACAGCCACTGAGAGTGA---AGACGAGCAGGAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................GACGCGAGCCGAGGTAAGTGTGAATGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
.........................................GTGCGTAGTAGTGCGGCATCCACGACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
................................................................GACGCGAGCCGAGGTAAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001000000
........................................AGTGCGTAGTAGTGCGGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001000000
droEre2
ACCAGG------------------------CGGCGTCTCCAGTGCGTAATAGTGCGGCAACTACGACGCGAGCCGAGGTAAGTGTGAATGAGGCAAATACAGAA---------------------------------GAAGAAGGCGTGGCCAGTGAAAGCAGTGACAGCGAGGAAGAGGATGAGGAGGTG------GAGGAGGAGGAGGAAGAAGACG----------------------AAGAGGAAGACGAGGATGAG----------------GAG-----------GAGGGGGAAG------------AACAA--------GCGGAGGA---------------ATCTGTAG------------AAGATACGGGTAGGGAA-------CTGCTTAACCTCCCAGAAGAAGCT---CTGCAGCCGACCTC---TTCTGAAGTCACAGAGGAGGAAGA------------------------------ATCCTCATCGG------AGTACGAAGAGGTGACAGCCACTGAGAGTGA---AGAA------GAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................AA---------------------------------GAAGAAGGCGTGGCCAGTGAAAGC..........................................................................................................................................................................................................................................................................................................................................................................................................2611.0010001000
........................................................................................TGAGGCAAATACAGAA---------------------------------GAAGAAGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGCCACTGAGAGTGA---AG...........2011.0010000010
..........................................................AACTACGACGCGAGCCGAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
...............................................................................AAGTGTGAATGAGGCAAATAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
..........................................................................................................................................................................GAGGAAGAGGATGAGGAGGG.............................................................................................................................................................................................................................................................................................................................................................................2060.1710001000
.......................................................................................................................................................................................AGGAGGTG------GAGGAGGAGGA...........................................................................................................................................................................................................................................................................................................................................................1980.1311000000
........................................................................................................................................................................................GGAGGTG------GAGGAGGAGGA...........................................................................................................................................................................................................................................................................................................................................................18150.0710000100
...........................................................................................................................................................................................GGTG------GAGGAGGAGGAGGA........................................................................................................................................................................................................................................................................................................................................................18180.0611000000

Generated: 06/08/2015 at 03:43 PM