ID:

dpe_1080

 Coordinate:

scaffold_2:5422280-5422430 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.5 -27.4 -27.2

Flybase annnotation

CDS [Dper\GL10630-cds]; exon [dper_GLEANR_10752:13]; intron [Dper\GL10630-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAGTCCCCCAGCACAGATCTCAGCACCCCCTCAGCTTCTGCCGGGCTTCATTCCCAAAGCGTGGAGGGAGCGTGTGGAGACCATTGTGGAGGGTCTGGAGGTCGTCACACCACCTGCCAGTCCCAACCTCCAAGCGGAGCTAATCTTCGAGTCCCTGGACGTAACACCCACGCCAACGCCACCACCGAGTCCTCCCATTGGAGTGTCACTGCAAGCCGGATTCATGCCACGATCCAGTCTAGTGGAAACCG
*************************************************************************.(((((.(((...))).(((.((((((((.((...)).)))).)))).)))...)))))..(((((.....))))).(((....)))..***************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V111
male body		 M042
female body
 M021
embryo
 V042
embryo
 V057
head
.........................................................................GTGGAGACCATTGTGGAGG............................................................................................................................................................... 19 0 1 3.00 3 3 0 0 0 0
............................................................................................GTCTGGAGGTCGTCACACCACC......................................................................................................................................... 22 0 1 2.00 2 0 0 2 0 0
.........................................................................GTGGAGACCATTGTGGAGGGTCT........................................................................................................................................................... 23 0 1 2.00 2 2 0 0 0 0
.........................................................AGCGTGGAGGGAGCGTGTGGA............................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0
..............................................................................GACCATTGTGGAGGGTCTGG......................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0
.........................................................................GTGGAGACCATTGTGGAGGGTCTGGAGGT..................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................................ATCTTCGAGTCCCTGGACGT......................................................................................... 20 0 1 1.00 1 0 1 0 0 0
....................................................................................TGTGGAGGGTCTGGAGGT..................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................AGCTAATCTTCGAGTCCCTGGA............................................................................................ 22 0 1 1.00 1 0 1 0 0 0
.................................................................................CATTGTGGAGGGTCTGGAGG...................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
............................................................GTGGAGGGAGCGTGTGGAGA........................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................................ATCTTCGAGTCCCTGGAC........................................................................................... 18 0 1 1.00 1 0 0 1 0 0
..............................................................................................................................................................................................CCTCCCATTGGAGTGTCACTGCAAGCC.................................. 27 0 1 1.00 1 0 1 0 0 0
.................................................................................CATTGTGGAGGGTCTGGA........................................................................................................................................................ 18 0 1 1.00 1 0 1 0 0 0
...............................CAGCTTCTGCCGGGCTTCATTCC..................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0
..............................................................................................................................................................................................................................CATGCCACGATCCAGTCTAGT........ 21 0 1 1.00 1 1 0 0 0 0
...................................................................................................GGTCGTCACACCACCTGCC..................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0
...............................CAGCTTCTGCCGGGCTTCATT....................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0
..........................................................................................................................................GCTAATCTTCGAGTCCCTGGACGTAAC...................................................................................... 27 0 1 1.00 1 0 1 0 0 0
............................................................GTGGAGGGAGCGTGTGGAGAC.......................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
............................................................................................GTCTGGAGGTCGTCACACCAC.......................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0
....................................................................................................GTCGTCACACCACCTGCCG.................................................................................................................................... 19 1 1 1.00 1 0 0 1 0 0
............ACAGATCTCAGCACCCCCTCAGCTT...................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0
..............................................................................AACCTTTGTGGAGGGTCTGGA........................................................................................................................................................ 21 2 2 0.50 1 0 0 0 1 0
............................CCTCAGCATCTGGGGGGCTT........................................................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 1
.......................................GCCGGGCTTGATTCCGAAAC................................................................................................................................................................................................ 20 3 20 0.05 1 0 0 0 1 0

Anti-sense strand reads

GTCAGGGGGTCGTGTCTAGAGTCGTGGGGGAGTCGAAGACGGCCCGAAGTAAGGGTTTCGCACCTCCCTCGCACACCTCTGGTAACACCTCCCAGACCTCCAGCAGTGTGGTGGACGGTCAGGGTTGGAGGTTCGCCTCGATTAGAAGCTCAGGGACCTGCATTGTGGGTGCGGTTGCGGTGGTGGCTCAGGAGGGTAACCTCACAGTGACGTTCGGCCTAAGTACGGTGCTAGGTCAGATCACCTTTGGC
*****************************************************************************************.(((((.(((...))).(((.((((((((.((...)).)))).)))).)))...)))))..(((((.....))))).(((....)))..************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V057
head
 M042
female body
 V111
male body
........GTCGTGTGAAGAGTCGTGGGGT............................................................................................................................................................................................................................. 22 3 2 0.50 1 1 0 0
............TGTCAAGAGTCGTGGGGGAGGT......................................................................................................................................................................................................................... 22 3 2 0.50 1 1 0 0
........................................................................................................................................................................GTGCGGTTGCGGAGGTGG................................................................. 18 1 2 0.50 1 1 0 0
......................................................................................................................................................................CGGTGCGGTACCGGTGGTGGC................................................................ 21 3 15 0.07 1 1 0 0
...........................................................GCTCCTGCCTCGGACACCTC............................................................................................................................................................................ 20 3 17 0.06 1 1 0 0
....................................................................................ACCGCTCCCAGATCTCCAG.................................................................................................................................................... 19 3 20 0.05 1 0 1 0
.....................................................................................................................................................................TGGGTGGGGTTGTGGTGGTG.................................................................. 20 2 20 0.05 1 0 0 1
..........................................................................................................................................CTATTAGAAGCTCGGGGAT.............................................................................................. 19 3 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_2:5422230-5422480 - dpe_1080 CAGTCCCCCAGCACAGATCTCAGCACCCCC-----------TCAGCTTCTGCCGGGCTTCATTCCCAAAGCGTGGAGGGAGCGTGTGGAGACCATTGTGGAGGGTCTGGAGGTCGTC--------ACACCACCTGCCAGTCCCAACCTCCAAGCGGAGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTTCGAGTCCCTGGACGTAACACCCACGCCAACGCCACCACCGAGTCCTCCCATTGGAGTGTCACTGCAAGCCGGATTCAT---------------------------------------------------------------------------------------------------GCCACGATCCAGTCTAGTGGAAACCG
dp5 3:5214529-5214779 - CAGTCCCCCAGCACAGATCCCAGCACCCCC-----------TCAGCTTCTGCCGGGCTTCATTCCCAAAGCGTGGAGGGAGCGTGTGGAGACCATTGTGGAGGGTCTGGAGGTCGTC--------ACACCACCTGCCAGTCCCAACCTCCAAGCGGAGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTTCGAGTCCCTGGACGTAACACCCACGCCAACGCCACCACCCAGTCCTCCCATTGAAGTGTCATTGCAGACAGGATTCAT---------------------------------------------------------------------------------------------------GCCACGATCAAGTCTAGTGGAAACGG
droWil2 scf2_1100000004512:1277716-1277952 - AGAGT--------------TCAACACCCA-----------CGC--CACCAACTGGGC-CACTTCCAACAAC------AACGAAAGTAGAGGAAACTATAGAGATTCTCG---------------------------------------------------------------------------------------------------------------------------------------------------------AGGAT-TTGGAAGGGAC-TTCAACGCCGACGCCACCAGTTAGTCCACTTCCAACAACATCCAAAGTGGAGGAAACTATAGAGATTCTCGAGTCTCTAGAAGACACTTCAACACCCGCGCCACCATCTAGACCACTTCC--------------------------A---------------------------------------------------------------------------------------------------TCCACAACCAAAGTT-GAGGAAACTA
droAna3 scaffold_13266:14843464-14843570 + GGAA----------------------------------------------------------------------------------------------------------------------------------------------------------CTTGTGGTCGAGTCCCTGGAAGTCACACCCACTCCGTCGCCTCCCCCGGAACCATTTCCTTATATGTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGCACCATTCTCCGGGAAAGCCTAATCGAAGCGG
droKik1 scf7180000302470:1518671-1518697 + TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT---------------------------------------------------------------------------------------------------GCCCCGCTCTAGTATGGTGCA---GG
droFic1 scf7180000453778:676063-676238 + CAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTACAGCACCGCTCAACAAAGTCCAGCGGTGGAGGTGGAAAGTTTAAGTGAAGCCGAGGCTTATGTGGAGATTATCGAAGTAACACCAGTTAATTCGCCACCCGGCAGTCCAACTAGTCAACGGCCAATTGAAGGGGGTTTCCTGCCCAGGCCGAGTTTAGCGG---------------------------------------------------------------------------------------------------AAACGG
droEle1 scf7180000491349:281118-281344 + CTATC-----------------------------AATCTCCAG--TGCCAATTGACA-TTATCCCTCAGAC------AGGCTATGTTGAGAACACTGTGGAGGACATCGAAATCATACAGGCCCC----------ACAGTCAGTGTTTCAAAATGGGTGT-------------------------------------------------------------------------------------------------------------------------------------GCGCCTCAGACAGCCCTTGT------------------------AGAGACAATTGTGGAAGAGATCCAAGTTAGACC------------------TGACCCTCTACTTCGGTCGATAGTGACAACTGATTTCAT---------------------------------------------------------------------------------------------------ACCCCGCTCTAGTATGGTACA---AG
droRho1 scf7180000779318:408612-408882 - CC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACAATACCGCTCCACACAGTCCCACAGTGGAAGTGGATAGATTTAGCGAAGACGAGGCTTATGTGGAGATTATTGACGTTACACCCGTTAATACACCACCAAGGAGTCTATCAATTCAAGGCCCTATTGAAGTGGGTTTCGTTCCCAGGCCAAGCTTAGCGGAAACGGCGGTTATTGTGGCTTCCCTGGAGGTTACTCCCACTCCCACACCTCCACCCAGTCCACCTCTGAAACTCAGAATACCACCATCGAATCTGGCACAAACGG
droBia1 scf7180000301754:2072188-2072458 + CC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATAATACGGCACCACATAGTCCGACTGTGGAGGTGGAAAGATTGAGCGAATCCGAGGCTTATGTGGAGATTATGGAAGTCACACCAGTTAATACGCCACCAAGTAGTCCAGCACTTCAAAGGCCCATCCAAGGGGGCTTCCTCCCCAGGCCAAGCCTGGCGGAAACGGCTGTGATAGTGGCTTCACTGGAGGTCACTCCAACTCCCACTCCTCCACCCAGTCCACCACTGAAGCTCAGAATACCACCACCAAGCGAGAGAGAATCGG
droTak1 scf7180000415627:510903-511146 + ACAG------------AGGTTAATACTCCCTATCAACCACCGC--AACAAATTGACA-TTATTCCTGAAAC------CGGCTTTGTTGAGAGCATTGTAGAGGATATCGAAATCGCAGAGCCCGA----------ACAGATGGTTATTCAAAATACCTAT-------------------------------------------------------------------------------------------------------------------------------------GCACCTCGCGGTGGAGTCGTA------------------------GAATCAATAGTGGAAGAGATAGAAGTAATACCCGA------------------TCCCCCACGGCAATCAATAGTGACCACCAATTTTAT---------------------------------------------------------------------------------------------------GCCTCGCGCAAATTTGGTTCA---AG
droEug1 scf7180000409462:2269235-2269422 + TAGTCCTCCA--------------------TATCAACCACCCC--CACAAGTTGATA-TTCTTCCTCAAAC------AGGCTTTGTTGAAAGTGTGGTAGAGGATATCGAAATCACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAACCTGAAATAACAGTGGAGGAGATCGAAGTGCTCCG------------------CAATCCTCCACAGCAATCCATAGTGACAACCAACTATAT---------------------------------------------------------------------------------------------------GCCTCGAGCAAGTCTGGTGCA---GG
dm3 chr2R:10563343-10563602 - TGAGGTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACCAACATCATCGCCTCCACCCGAACAGTTTCCCTTCATTTCCAGAGAGAGCCTAATCGTAGCTGATGATTACGTG-GAGGTG-GAAGAAGTCAC-CCCTTACAATACGGCACCACATAGTCCAATAGTGGAAGTGGAAAGATTGAGTGAAGCCGAGTCTTATGTGGAGATTAATGAAGTTGCACCAGTTAATACTCCAC---------------CCCAGAGGTCCGTTGAAGTGGGTTTCCTTCCCAGACCCAGCTTAGCCG---------------------------------------------------------------------------------------------------AAACGG
droSim2 2r:11266414-11266667 - GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCCACCCGAACAGTTTCCATTCATTTCCAGAGAGAGCCTAATCGTACCAGATGATTACGTG-GGGGTG-GAGGAAGTCAC-CCCTTACAATACGGCACCTCATAGTCCAATAGTGGAAGTGGAAAGATTGAGTGAAGCCGAGGCTTATGTGGAGATTATTGAAGTTACACCAGTTAATACTCCACCAAGTAGTCCTCCACCCCAGAGGCCCATTGAAGTGGGTTTCCTCCCCAGACCCAGCTTAGCCG---------------------------------------------------------------------------------------------------AAACGG
droSec2 scaffold_1:8082796-8083073 - TGAGGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACCAACATCATCGCCTCCACCCGAACAATTTCCCTTCATTACCAGAGAGAGCCTAATCGTACCAGATGATTACGTGGGAGGTGGGAGGAAGTCACTTCCTTACAATACGGCACCGCATAGTCCAATAGTGAAAGTGGAAAGATTGAGTGAAGCCGAGGCTTATGTGGAGATTATTGAAGTTACACCAGTTAATACTCCACCAAGTAGTCCTCCACCCCAGAGGCCCATTGAAGTGAGCTTCCTCCCCAGACCCAGCTTAGCCA---------------------------------------------------------------------------------------------------AAACGG
droYak3 2R:10495525-10495787 - CAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCATCGCCTCCACCCGAACGGTTTCCATTTATATCCAGAGAGAGCCTAATCGTAGCTGATGATTATGTG-GAGGTG-GAGGAAGTCAC-CCCTTACAATACGGCACCACATAGTCCAATAGTGGAAGTGGAAAGGTTGAGTGAAGCCGAGGCTTATGTGGAGATTAGTGAAGTTACCCCAGTTAATACTCCACCAAGTAGTCCTCCACCTCAGAGGCCCATTGAAGTGGGTTACCTCCCCAGGCCCAGCTTAGCTG---------------------------------------------------------------------------------------------------AAACGG
droEre2 scaffold_4845:15284636-15284898 + AAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCATCGCCGCCACCCGAACAGTTTCCTTTTATTTCCAGGGAGAGCCTAATCGTGGCTGATGATTATGTG-GAGGTG-GAAGAAGTCAC-CCCTTACAATACGGCACCACATAGTCCAATAGTGGAAGTGGAAAGATTGAGTGAAGCCGAGGCTTATGTAGAGATTATTGAAGTTACACCAGTTAATACTCCACCAAGTAGTCCACCACCTCAGAGGCCCATGGAAGTGGGCTTCCTGCCCAGACCCAGCTTAGCGG---------------------------------------------------------------------------------------------------AAACGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
CAGTCCCCCAGCACAGATCTCAGCACCCCC-----------TCAGCTTCTGCCGGGCTTCATTCCCAAAGCGTGGAGGGAGCGTGTGGAGACCATTGTGGAGGGTCTGGAGGTCGTC--------ACACCACCTGCCAGTCCCAACCTCCAAGCGGAGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTTCGAGTCCCTGGACGTAACACCCACGCCAACGCCACCACCGAGTCCTCCCATTGGAGTGTCACTGCAAGCCGGATTCAT---------------------------------------------------------------------------------------------------GCCACGATCCAGTCTAGTGGAAACCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................GTGGAGACCATTGTGGAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.003000003
.......................................................................................................GTCTGGAGGTCGTC--------ACACCACC...................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002200000
....................................................................................GTGGAGACCATTGTGGAGGGTCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002000002
....................................................................AGCGTGGAGGGAGCGTGTGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.........................................................................................GACCATTGTGGAGGGTCTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
....................................................................................GTGGAGACCATTGTGGAGGGTCTGGAGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000001
........................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGTCCCTGGACGT............................................................................................................................................................................................2011.001010000
...............................................................................................TGTGGAGGGTCTGGAGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
............................................................................................................................................................AGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTTCGAGTCCCTGGA...............................................................................................................................................................................................2211.001010000
............................................................................................CATTGTGGAGGGTCTGGAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.......................................................................GTGGAGGGAGCGTGTGGAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
........................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGTCCCTGGAC..............................................................................................................................................................................................1811.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................CCTCCCATTGGAGTGTCACTGCAAGCC.....................................................................................................................................2711.001010000
............................................................................................CATTGTGGAGGGTCTGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
..........................................CAGCTTCTGCCGGGCTTCATTCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................CAT---------------------------------------------------------------------------------------------------GCCACGATCCAGTCTAGT........2111.001000001
..............................................................................................................GGTCGTC--------ACACCACCTGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
..........................................CAGCTTCTGCCGGGCTTCATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.............................................................................................................................................................GCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTTCGAGTCCCTGGACGTAAC.........................................................................................................................................................................................2711.001010000
.......................................................................GTGGAGGGAGCGTGTGGAGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.......................................................................................................GTCTGGAGGTCGTC--------ACACCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...............................................................................................................GTCGTC--------ACACCACCTGCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
............ACAGATCTCAGCACCCCC-----------TCAGCTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
dp5
CAGTCCCCCAGCACAGATCCCAGCACCCCC-----------TCAGCTTCTGCCGGGCTTCATTCCCAAAGCGTGGAGGGAGCGTGTGGAGACCATTGTGGAGGGTCTGGAGGTCGTC--------ACACCACCTGCCAGTCCCAACCTCCAAGCGGAGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTTCGAGTCCCTGGACGTAACACCCACGCCAACGCCACCACCCAGTCCTCCCATTGAAGTGTCATTGCAGACAGGATTCAT---------------------------------------------------------------------------------------------------GCCACGATCAAGTCTAGTGGAAACGGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................GTGGAGACCATTGTGGAGGGTCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2321.0020000200000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAT---------------------------------------------------------------------------------------------------GCCACGATCAAGTC............2020.5010100000000
......................................................................................................................................................................................................................................................................................................................................................................GGACGTAACACCCACGCCAAC.............................................................................................................................................................................2120.5010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................AGACAGGATTCAT---------------------------------------------------------------------------------------------------GCCAC.....................1820.5010000100000
...............................................................................................................GTCGTC--------ACACCACCTGCCAGTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................2320.5010010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGACAGGATTCAT---------------------------------------------------------------------------------------------------GCCAC.....................2120.5010000100000
..........................................CAGCTTCTGCCGGGCTTCATTCCCAAAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2920.5010010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAGACAGGATTCAT---------------------------------------------------------------------------------------------------GCCAC.....................2320.5010010000000
.....................................................................GCGTGGAGGGAGCGTGTGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010100000000
.....................................................................................................................................................CAAGCGGAGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTTCGAGTCCCT..................................................................................................................................................................................................2620.5010100000000
.........................................................................................GACCATTGTGGAGGGTCTGGAGGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010010000000
..................................................................................GTGTGGAGACCATTGTGGAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................CCCATTGAAGTGTCATTGCAGACAG....................................................................................................................................2520.5010100000000
.................................................................................................................CGTC--------ACACCACCTGCCAGTCCCAAC......................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010010000000
droWil2
AGAGT--------------TCAACACCCA-----------CGC--CACCAACTGGGC-CACTTCCAACAAC------AACGAAAGTAGAGGAAACTATAGAGATTCTCG---------------------------------------------------------------------------------------------------------------------------------------------------------AGGAT-TTGGAAGGGAC-TTCAACGCCGACGCCACCAGTTAGTCCACTTCCAACAACATCCAAAGTGGAGGAAACTATAGAGATTCTCGAGTCTCTAGAAGACACTTCAACACCCGCGCCACCATCTAGACCACTTCC--------------------------A---------------------------------------------------------------------------------------------------TCCACAACCAAAGTT-GAGGAAACTASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................CTCG---------------------------------------------------------------------------------------------------------------------------------------------------------AGGAT-TTGGAAGGGA..................................................................................................................................................................................................................................................................................1914.00400310
...........................................................................................AAACTATAGAGATTCTCG---------------------------------------------------------------------------------------------------------------------------------------------------------AGG...............................................................................................................................................................................................................................................................................................2112.00202000
...................................................................................................GAGATTCTCG---------------------------------------------------------------------------------------------------------------------------------------------------------AGGAT-TTGGAAGG....................................................................................................................................................................................................................................................................................2312.00200020
...................................................................................................................................................................................................................................................................................................................................AAAGTGGAGGAAACTATAGA.................................................................................................................................................................................................................2012.00200020
...................................................................................................GAGATTCTCG---------------------------------------------------------------------------------------------------------------------------------------------------------AGGAT-TTGGAAGGGA..................................................................................................................................................................................................................................................................................2512.00200110
.........................................................................................................................................................................................................................................................................................................................AACAACATCCAAAGTGGAGG...........................................................................................................................................................................................................................2011.00100010
..............................................................................................CTATAGAGATTCTCG---------------------------------------------------------------------------------------------------------------------------------------------------------AGGAT-TTGGAAGG....................................................................................................................................................................................................................................................................................2811.00100100
.......................................................................................................................................................................................................................................................................................................................................................GATTCTCGAGTCTCTAGAA..............................................................................................................................................................................................1911.00100010
.................................................................................................................................................................................................................................................................................................................................CCAAAGTGGAGGAAACTATAGA.................................................................................................................................................................................................................2211.00100010
.....................................................................................................GATTCTCG---------------------------------------------------------------------------------------------------------------------------------------------------------AGGAT-TTGGAAGGGA..................................................................................................................................................................................................................................................................................2311.00100010
...................................................................................................GAGATTCTCG---------------------------------------------------------------------------------------------------------------------------------------------------------AGGAT-TTGGAAGGG...................................................................................................................................................................................................................................................................................2411.00100100
................................................................................................ATAGAGATTCTCG---------------------------------------------------------------------------------------------------------------------------------------------------------AGGAT-TTGGAAGGGA..................................................................................................................................................................................................................................................................................2811.00100100
......................................................................................................................................................................................................................................................................................C-TTCAACGCCGACGCCACCAGTTAGTC......................................................................................................................................................................................................................................................2711.00100010
................................................................................................................................................................................................................................................................................................................................................................................................CATCTAGACCACTTCC--------------------------A---------------------------------------------------------------------------------------------------TCCAC.....................2211.00100010
..................................................................................................AGAGATTCTCG---------------------------------------------------------------------------------------------------------------------------------------------------------AGGAT-TTGGAAGGGA..................................................................................................................................................................................................................................................................................2611.00101000
.............................................................................AACGAAAGTAGAGGAAACTATA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000
........................................................................................................TCTCG---------------------------------------------------------------------------------------------------------------------------------------------------------AGGAT-TTGGAAGGGAC-TT..............................................................................................................................................................................................................................................................................2311.00110000
...............................................................................................................................................................................................................................................................................................................................ATCCAAAGTGGAGGAAACTATAGA.................................................................................................................................................................................................................2411.00100010
..................................................................................................................................................................................................................................................................................................................................CAAAGTGGAGGAAACTATAGA.................................................................................................................................................................................................................2111.00100010
...................................................................................................GAGATTCTCG---------------------------------------------------------------------------------------------------------------------------------------------------------AGGAT-TTGGAA......................................................................................................................................................................................................................................................................................2111.00100010
................................................................................................................................................................................................................................................................................................................................................CTATAGAGATTCTCGAGT......................................................................................................................................................................................................1820.50100010
..........................................................................................GAAACTATAGAGATTCTCG---------------------------------------------------------------------------------------------------------------------------------------------------------AG................................................................................................................................................................................................................................................................................................2130.33100010
............................................................................................................................................................................................................................................................................................................................................GAAACTATAGAGATTCTCGAG.......................................................................................................................................................................................................2130.33100010
droAna3
GGAA----------------------------------------------------------------------------------------------------------------------------------------------------------CTTGTGGTCGAGTCCCTGGAAGTCACACCCACTCCGTCGCCTCCCCCGGAACCATTTCCTTATATGTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGCACCATTCTCCGGGAAAGCCTAATCGAAGCGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................TATATGTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGCACCATTCTCCGGGAAA...............2811.001000010
...................................................................................................................................................................................GTCACACCCACTCCGTCGCCT................................................................................................................................................................................................................................................................................................................................................................2111.001001000
droKik1
TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT---------------------------------------------------------------------------------------------------GCCCCGCTCTAGTATGGTGCA---GGSizeHit CountTotal NormTotal
No Reads
droFic1
CAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTACAGCACCGCTCAACAAAGTCCAGCGGTGGAGGTGGAAAGTTTAAGTGAAGCCGAGGCTTATGTGGAGATTATCGAAGTAACACCAGTTAATTCGCCACCCGGCAGTCCAACTAGTCAACGGCCAATTGAAGGGGGTTTCCTGCCCAGGCCGAGTTTAGCGG---------------------------------------------------------------------------------------------------AAACGGSizeHit CountTotal NormTotal
No Reads
droEle1
CTATC-----------------------------AATCTCCAG--TGCCAATTGACA-TTATCCCTCAGAC------AGGCTATGTTGAGAACACTGTGGAGGACATCGAAATCATACAGGCCCC----------ACAGTCAGTGTTTCAAAATGGGTGT-------------------------------------------------------------------------------------------------------------------------------------GCGCCTCAGACAGCCCTTGT------------------------AGAGACAATTGTGGAAGAGATCCAAGTTAGACC------------------TGACCCTCTACTTCGGTCGATAGTGACAACTGATTTCAT---------------------------------------------------------------------------------------------------ACCCCGCTCTAGTATGGTACA---AGSizeHit CountTotal NormTotal
No Reads
droRho1
CC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACAATACCGCTCCACACAGTCCCACAGTGGAAGTGGATAGATTTAGCGAAGACGAGGCTTATGTGGAGATTATTGACGTTACACCCGTTAATACACCACCAAGGAGTCTATCAATTCAAGGCCCTATTGAAGTGGGTTTCGTTCCCAGGCCAAGCTTAGCGGAAACGGCGGTTATTGTGGCTTCCCTGGAGGTTACTCCCACTCCCACACCTCCACCCAGTCCACCTCTGAAACTCAGAATACCACCATCGAATCTGGCACAAACGGSizeHit CountTotal NormTotal
No Reads
droBia1
CC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATAATACGGCACCACATAGTCCGACTGTGGAGGTGGAAAGATTGAGCGAATCCGAGGCTTATGTGGAGATTATGGAAGTCACACCAGTTAATACGCCACCAAGTAGTCCAGCACTTCAAAGGCCCATCCAAGGGGGCTTCCTCCCCAGGCCAAGCCTGGCGGAAACGGCTGTGATAGTGGCTTCACTGGAGGTCACTCCAACTCCCACTCCTCCACCCAGTCCACCACTGAAGCTCAGAATACCACCACCAAGCGAGAGAGAATCGGSizeHit CountTotal NormTotal
No Reads
droTak1
ACAG------------AGGTTAATACTCCCTATCAACCACCGC--AACAAATTGACA-TTATTCCTGAAAC------CGGCTTTGTTGAGAGCATTGTAGAGGATATCGAAATCGCAGAGCCCGA----------ACAGATGGTTATTCAAAATACCTAT-------------------------------------------------------------------------------------------------------------------------------------GCACCTCGCGGTGGAGTCGTA------------------------GAATCAATAGTGGAAGAGATAGAAGTAATACCCGA------------------TCCCCCACGGCAATCAATAGTGACCACCAATTTTAT---------------------------------------------------------------------------------------------------GCCTCGCGCAAATTTGGTTCA---AGSizeHit CountTotal NormTotal
No Reads
droEug1
TAGTCCTCCA--------------------TATCAACCACCCC--CACAAGTTGATA-TTCTTCCTCAAAC------AGGCTTTGTTGAAAGTGTGGTAGAGGATATCGAAATCACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAACCTGAAATAACAGTGGAGGAGATCGAAGTGCTCCG------------------CAATCCTCCACAGCAATCCATAGTGACAACCAACTATAT---------------------------------------------------------------------------------------------------GCCTCGAGCAAGTCTGGTGCA---GGSizeHit CountTotal NormTotal
No Reads
dm3
TGAGGTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACCAACATCATCGCCTCCACCCGAACAGTTTCCCTTCATTTCCAGAGAGAGCCTAATCGTAGCTGATGATTACGTG-GAGGTG-GAAGAAGTCAC-CCCTTACAATACGGCACCACATAGTCCAATAGTGGAAGTGGAAAGATTGAGTGAAGCCGAGTCTTATGTGGAGATTAATGAAGTTGCACCAGTTAATACTCCAC---------------CCCAGAGGTCCGTTGAAGTGGGTTTCCTTCCCAGACCCAGCTTAGCCG---------------------------------------------------------------------------------------------------AAACGGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................GTAGCTGATGATTACGTG-GA.................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................AAGATTGAGTGAAGCCGAGT..................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................GGAAAGATTGAGTGAAGCCGAGT..................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................AGTTAATACTCCAC---------------CCCAGAGGTCC..............................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................AGATTGAGTGAAGCCGAGT..................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................TTCCCTTCATTTCCAGAGAGA..............................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................AAGTGGAAAGATTGAGTGA..........................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.............................................................................................................................................................................................................................................................................................................................GTGGAAAGATTGAGTGAA.........................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................GTGGAAGTGGAAAGATTGAGTGAA.........................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................AGTGGAAAGATTGAGTGAAGC.......................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.........................................................................................................................................................................................................................................................................TG-GAAGAAGTCAC-CCCTTAC.........................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................TTCCCTTCATTTCCAGAGAGAGC............................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................GATGATTACGTG-GAGGT..............................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................GTGGAAGTGGAAAGATTGA..............................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................GTAGCTGATGATTACGTG-G..................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................GTAGCTGATGATTACGTG-...................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................AATAGTGGAAGTGGAAAGATTGA..............................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
droSim2
GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCCACCCGAACAGTTTCCATTCATTTCCAGAGAGAGCCTAATCGTACCAGATGATTACGTG-GGGGTG-GAGGAAGTCAC-CCCTTACAATACGGCACCTCATAGTCCAATAGTGGAAGTGGAAAGATTGAGTGAAGCCGAGGCTTATGTGGAGATTATTGAAGTTACACCAGTTAATACTCCACCAAGTAGTCCTCCACCCCAGAGGCCCATTGAAGTGGGTTTCCTCCCCAGACCCAGCTTAGCCG---------------------------------------------------------------------------------------------------AAACGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................................................ACCAGATGATTACGTG-GGGGTG-GAG.........................................................................................................................................................................................................................................................................................2511.00100000000000100000
.................................................................................................................................................................................................................................................................................................................................................................................................AAGTAGTCCTCCACCCCAGA...................................................................................................................................................2011.00100100000000000000
......................................................................................................................................................................................................................................................................................................CACCTCATAGTCCAATAGTGGAAGTGGA......................................................................................................................................................................................................................................2811.00100010000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................AAGTAGTCCTCCACCCCAGAG..................................................................................................................................................2111.00100100000000000000
..........................................................................................................................................................................................................................................GCCTAATCGTACCAGATGA...........................................................................................................................................................................................................................................................................................................1911.00100000000000100000
.................................................................................................................................................................................................................................................................................................................................................CGAGGCTTATGTGGAGATTATTGAAG.............................................................................................................................................................................................2611.00100000001000000000
............................................................................................................................................................................................................................................................................................................................................GAAGCCGAGGCTTATGTGGA........................................................................................................................................................................................................2011.00100010000000000000
................................................................................................................................................................................................................................................................................................................................GAAAGATTGAGTGAAGCCGAGGCT................................................................................................................................................................................................................2411.00100000000000100000
........................................................................................................................................................................................................................................................GATGATTACGTG-GGGGTG-GAGGAA......................................................................................................................................................................................................................................................................................2411.00100010000000000000
droSec2
TGAGGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACCAACATCATCGCCTCCACCCGAACAATTTCCCTTCATTACCAGAGAGAGCCTAATCGTACCAGATGATTACGTGGGAGGTGGGAGGAAGTCACTTCCTTACAATACGGCACCGCATAGTCCAATAGTGAAAGTGGAAAGATTGAGTGAAGCCGAGGCTTATGTGGAGATTATTGAAGTTACACCAGTTAATACTCCACCAAGTAGTCCTCCACCCCAGAGGCCCATTGAAGTGAGCTTCCTCCCCAGACCCAGCTTAGCCA---------------------------------------------------------------------------------------------------AAACGGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................................................................................................GAAGCCGAGGCTTATGTGGAGATT....................................................................................................................................................................................................2412.0020020
....................................................................................................................................................................................................................................................................................................................................................................ATTGAAGTTACACCAGTTA.................................................................................................................................................................................1912.0020020
..........................................................................................................................................................................................................................................................................................................................................GTGAAGCCGAGGCTTATGTGGA........................................................................................................................................................................................................2212.0020020
..........................................................................................................................................................................................................................................................................................................................................GTGAAGCCGAGGCTTATGTG..........................................................................................................................................................................................................2011.0010010
........................................................................................................................................................................................................................................GAGCCTAATCGTACCAGATGAT..........................................................................................................................................................................................................................................................................................................2211.0010010
...................................................................................................................................................................................................................................................................................................................AATAGTGAAAGTGGAAAGATTGAGT............................................................................................................................................................................................................................2511.0010010
..........................................................................................................................................................................................................................................................................................................GCATAGTCCAATAGTGAAAGTGGA......................................................................................................................................................................................................................................2411.0010010
....................................................................................................................................................................................................................................................................................................................................GATTGAGTGAAGCCGAGGCT................................................................................................................................................................................................................2011.0010010
..................................................................................................................................................................................................................................................................................................................................................................................AGTTAATACTCCACCAAGTAGTCCT.............................................................................................................................................................2511.0010010
........................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCCCAGACCCAGCTTAGCCA---------------------------------------------------------------------------------------------------......2311.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................ATACTCCACCAAGTAGTC...............................................................................................................................................................1811.0010010
.......................................................................................................................................................................................................................................................................................................ACCGCATAGTCCAATAGTGAAAGTG........................................................................................................................................................................................................................................2511.0010010
....................................................................................................................................................................................................................................................................................................................ATAGTGAAAGTGGAAAGATT................................................................................................................................................................................................................................2011.0010010
.........................................................................................................................................................................................................................................................................................................................GAAAGTGGAAAGATTGAGTGA..........................................................................................................................................................................................................................2111.0010010
......................................................................................................................................................................................................................................................................................................................................TTGAGTGAAGCCGAGGCTTATGT...........................................................................................................................................................................................................2311.0010010
.........................................................................................................................................................................................................................................................................................................................................AGTGAAGCCGAGGCTTATGTGGAGATT....................................................................................................................................................................................................2711.0010010
..................................................................................................................................................................................................................................................................................................................................AAGATTGAGTGAAGCCGAGGCT................................................................................................................................................................................................................2211.0010010
............................................................................................................................................................................................................................................................................................................ATAGTCCAATAGTGAAAGTGGA......................................................................................................................................................................................................................................2211.0010010
.................................................................................................................................................................................................................................................................................................................................................CGAGGCTTATGTGGAGATT....................................................................................................................................................................................................1911.0010010
..................................................................................................................................................................................................................................................................................................................................AAGATTGAGTGAAGCCGAGGC.................................................................................................................................................................................................................2111.0010010
...........................................................................................................................................................................................................................................................................................TTACAATACGGCACCGCATAGTC......................................................................................................................................................................................................................................................2311.0010010
.........................................................................................................................................................................................................................................AGCCTAATCGTACCAGATG............................................................................................................................................................................................................................................................................................................1911.0010010
.........................................................................................................................................................................................................................................................................................................................GAAAGTGGAAAGATTGAGT............................................................................................................................................................................................................................1911.0010010
...........................................................................................................................................................................................................................................................................................................................AAGTGGAAAGATTGAGTGA..........................................................................................................................................................................................................................1911.0010010
..................................................................................................................................................................................................................................................................................................................CAATAGTGAAAGTGGAAA....................................................................................................................................................................................................................................1811.0010010
.....................................................................................................................................................................................................................................................................................................GCACCGCATAGTCCAATAGTGAAAGT.........................................................................................................................................................................................................................................2611.0010010
..................................................................................................................................................................................................................................................GTACCAGATGATTACGTGGA..................................................................................................................................................................................................................................................................................................2011.0010010
....................................................................................................................................................................................................................................................ACCAGATGATTACGTGGAG.................................................................................................................................................................................................................................................................................................1911.0010010
............................................................................................................................................................................................................................................................................................................................................GAAGCCGAGGCTTATGTGGAGATTATT.................................................................................................................................................................................................2711.0010010
........................................................................................................................................................................................................................................................................................................................................GAGTGAAGCCGAGGCTTATGTGGA........................................................................................................................................................................................................2411.0010010
................................................................................................................................................................................................................................................................................................................................GAAAGATTGAGTGAAGCCGAGGCT................................................................................................................................................................................................................2411.0010010
..........................................................................................................................................................................................................................................................................................................................................GTGAAGCCGAGGCTTATGTGGAGATT....................................................................................................................................................................................................2611.0010010
..................................................................................................................................................................................................................................................................................................................CAATAGTGAAAGTGGAAAGATTG...............................................................................................................................................................................................................................2311.0010010
...................................................................................................................................................................................................................................................TACCAGATGATTACGTGGAG.................................................................................................................................................................................................................................................................................................2011.0010010
.....................................................................................................................................................................................................................................................................................................................................ATTGAGTGAAGCCGAGGCTTATGTGGA........................................................................................................................................................................................................2711.0010010
............................................................................................................................................................................................................................................................................................................ATAGTCCAATAGTGAAAGTGG.......................................................................................................................................................................................................................................2111.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCTCCCCAGACCCAGCTTAG............................................................................................................2311.0010010
........................................................................................................................................................................................................................................................................................................................................................TATGTGGAGATTATTGAAGT............................................................................................................................................................................................2011.0010010
...............................................................................................................................................................................................................................................................................................................GTCCAATAGTGAAAGTGGA......................................................................................................................................................................................................................................1911.0010001
...........................................................................................................................................................................................................................................................................................................................................TGAAGCCGAGGCTTATGTGGA........................................................................................................................................................................................................2111.0010010
...................................................................................................................................................................................................................................................................................................................AATAGTGAAAGTGGAAAGATTGA..............................................................................................................................................................................................................................2311.0010100
...................................................................................................................................................................................................................ATTTCCCTTCATTACCAGAGAGAGCC...........................................................................................................................................................................................................................................................................................................................2611.0010010
..................................................................................................................................................................................................................................................................................................................CAATAGTGAAAGTGGAAAGATT................................................................................................................................................................................................................................2211.0010010
......................................................................................................................................................................................................................................................................................................................................................................................AATACTCCACCAAGTAGTC...............................................................................................................................................................1911.0010010
droYak3
CAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCATCGCCTCCACCCGAACGGTTTCCATTTATATCCAGAGAGAGCCTAATCGTAGCTGATGATTATGTG-GAGGTG-GAGGAAGTCAC-CCCTTACAATACGGCACCACATAGTCCAATAGTGGAAGTGGAAAGGTTGAGTGAAGCCGAGGCTTATGTGGAGATTAGTGAAGTTACCCCAGTTAATACTCCACCAAGTAGTCCTCCACCTCAGAGGCCCATTGAAGTGGGTTACCTCCCCAGGCCCAGCTTAGCTG---------------------------------------------------------------------------------------------------AAACGGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................................................................................................................................CCAATAGTGGAAGTGGAAAGGTTGAGT............................................................................................................................................................................................................................2711.00100000010000
...............................................................................................................................................................................................................................................................................................................GTCCAATAGTGGAAGTGGAAAG...................................................................................................................................................................................................................................2211.00100100000000
.......................................................................................................................................................................................................................CCATTTATATCCAGAGAGAGC............................................................................................................................................................................................................................................................................................................................2111.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................AGTAGTCCTCCACCTCAGA...................................................................................................................................................1911.00110000000000
............................................................................................................................................................................................................................................................................................................................................GAAGCCGAGGCTTATGTGGAGATTA...................................................................................................................................................................................................2511.00100000010000
...............................................................................................................................................................................................................................................................................................................GTCCAATAGTGGAAGTGGAAAGGT.................................................................................................................................................................................................................................2411.00100000010000
..................................................................................................................................................................................................................................................................................GTCAC-CCCTTACAATACGGC.................................................................................................................................................................................................................................................................2011.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................AGATTAGTGAAGTTACCCCAGTT..................................................................................................................................................................................2311.00100100000000
.......................................................................................................................................................................................................................................................................................................................................................TTATGTGGAGATTAGTGA...............................................................................................................................................................................................1811.00100100000000
..........................................................................................................................................................................................................................................................................................................................................GTGAAGCCGAGGCTTATGTGGA........................................................................................................................................................................................................2211.00100000100000
.......................................................................................................................................................................................................................................................................................................................................................TTATGTGGAGATTAGTGAAGTT...........................................................................................................................................................................................2211.00100000010000
.................................................................................................................................................................................................................................................CGTAGCTGATGATTATGTG-...................................................................................................................................................................................................................................................................................................1911.00101000000000
....................................................................................................................................................................................................................................................................................................................................................GGCTTATGTGGAGATTAGTGAA..............................................................................................................................................................................................2211.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................AGTAGTCCTCCACCTCAGAGGCC...............................................................................................................................................2311.00100100000000
...............................................................................................................................................................................................................................................ATCGTAGCTGATGATTATGT.....................................................................................................................................................................................................................................................................................................2011.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................TTAGTGAAGTTACCCCAGTT..................................................................................................................................................................................2011.00101000000000
...................................................................................................................................................................................................................................................................................................................AATAGTGGAAGTGGAAAG...................................................................................................................................................................................................................................1811.00101000000000
droEre2
AAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCATCGCCGCCACCCGAACAGTTTCCTTTTATTTCCAGGGAGAGCCTAATCGTGGCTGATGATTATGTG-GAGGTG-GAAGAAGTCAC-CCCTTACAATACGGCACCACATAGTCCAATAGTGGAAGTGGAAAGATTGAGTGAAGCCGAGGCTTATGTAGAGATTATTGAAGTTACACCAGTTAATACTCCACCAAGTAGTCCACCACCTCAGAGGCCCATGGAAGTGGGCTTCCTGCCCAGACCCAGCTTAGCGG---------------------------------------------------------------------------------------------------AAACGGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................GATTATGTG-GAGGTG-GAAGAA......................................................................................................................................................................................................................................................................................2112.0021000100
.............................................................................................................................................................................................................................................................................................................................................................................................CACCAAGTAGTCCACCACCTCAGA...................................................................................................................................................2411.0011000000
..........................................................................................................................................................................................................................................................................................CTTACAATACGGCACCACATA.........................................................................................................................................................................................................................................................2111.0010010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCTGCCCAGACCCAGCTT..............................................................................................................2111.0011000000
........................................................................................................................................................................................................................CTTTTATTTCCAGGGAGAGC............................................................................................................................................................................................................................................................................................................................2011.0010000010
............................................................................................................................................................................................................................................................................................................ATAGTCCAATAGTGGAAGTGGAAAGAT.................................................................................................................................................................................................................................2711.0010100000
.......................................................................................................................................................................................................................................................................................................................................................TTATGTAGAGATTATTGAAGTTACACCA.....................................................................................................................................................................................2811.0011000000
.................................................................................................................................................................................................................................................................................................................................AAAGATTGAGTGAAGCCGAGG..................................................................................................................................................................................................................2111.0010000100
...........................................................................................................................................................................................................................................................GATTATGTG-GAGGTG-GAAGAAGT....................................................................................................................................................................................................................................................................................2311.0010000010
.................................................................................................................................................................................................................................................................................................................CCAATAGTGGAAGTGGAAAGATTG...............................................................................................................................................................................................................................2411.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................ACCAAGTAGTCCACCACCTCAGA...................................................................................................................................................2311.0010001000
....................................................................................................................................................................................................................................................GGCTGATGATTATGTG-GAGGTG-GA..........................................................................................................................................................................................................................................................................................2411.0011000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGGCTTCCTGCCCAGACCCAGCC...............................................................................................................2811.0010100000

Generated: 06/08/2015 at 03:42 PM