ID:

dpe_1070

 Coordinate:

scaffold_2:4948841-4948901 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.0 -9.9 -9.5

Flybase annnotation

CDS [Dper\GL10669-cds]; exon [dper_GLEANR_10791:1]; exon [dper_GLEANR_10791:2]; CDS [Dper\GL10669-cds]; intron [Dper\GL10669-in]

No Repeatable elements found

Sense Strand Reads

-----#############################################-------------------------------------------------------------##################################################
ACGACATGTTAAATTTCTGGATTTCCGTTGCAAAGGAGCAGCAGGCGCAGGTAAGGATATCGGTGTTTATCGGGTTATTTGATCATGGAGTGATCCTTCCTTTTTTCTCAGGCGCATGCACAGCAGCAGCAACCACGGCCAACGCAACAGGCGGCACAGCC
***************************************************.((((((.((.(((...(((((.....)))))))).))...)))))).....********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V111
male body		 M021
embryo
 V042
embryo
 V057
head
 V050
head
.............TTTCTGGATTTCCGTTGCAAAGGAGC.......................................................................................................................... 26 0 1 165.00 165 73 49 30 11 1 1
.............TTTCTGGATTTCCGTTGCAAAGGAG........................................................................................................................... 25 0 1 39.00 39 37 1 0 1 0 0
...................................................TAAGGATATCGGTGTTTATCGGGT...................................................................................... 24 0 1 31.00 31 22 9 0 0 0 0
.............TTTCTGGATTTCCGTTGCAAAGGA............................................................................................................................ 24 0 1 29.00 29 25 3 0 1 0 0
.....................................................................................................TTTTTCTCAGGCGCATGCACAGCA.................................... 24 0 1 29.00 29 28 0 0 1 0 0
.............TTTCTGGATTTCCGTTGCAAAGGAGCA......................................................................................................................... 27 0 1 23.00 23 22 1 0 0 0 0
...............................................................TGTTTATCGGGTTATTTGATCATGGAG....................................................................... 27 0 1 19.00 19 17 0 0 2 0 0
.....................................................................................................TTTTTCTCAGGCGCATGCACAGCAG................................... 25 0 1 15.00 15 15 0 0 0 0 0
...............TCTGGATTTCCGTTGCAAAGGAGC.......................................................................................................................... 24 0 1 12.00 12 2 2 7 1 0 0
...................................................TAAGGATATCGGTGTTTATCGGG....................................................................................... 23 0 1 10.00 10 7 0 0 3 0 0
.............TTTCTGGATTTCCGTTGCAAAGGAGCAG........................................................................................................................ 28 0 1 10.00 10 10 0 0 0 0 0
...............................................................TGTTTATCGGGTTATTTGATCATGG......................................................................... 25 0 1 8.00 8 8 0 0 0 0 0
..............TTCTGGATTTCCGTTGCAAAGGAGC.......................................................................................................................... 25 0 1 8.00 8 7 0 0 1 0 0
...................................................TAAGGATATCGGTGTTTATCGGGTTATT.................................................................................. 28 0 1 7.00 7 0 7 0 0 0 0
...........................................................................TATTTGATCATGGAGTGATCCTTCCTT........................................................... 27 0 1 6.00 6 5 0 0 1 0 0
.............TTTCTGGATTTCCGTTGCAAAGG............................................................................................................................. 23 0 1 5.00 5 5 0 0 0 0 0
....................................................................................................................TGCACAGCAGCAGCAACCACGGCC..................... 24 0 1 5.00 5 5 0 0 0 0 0
....................................................................................................................TGCACAGCAGCAGCAACCACGGC...................... 23 0 1 4.00 4 4 0 0 0 0 0
...........................................................................TATTTGATCATGGAGTGATCCTTCCT............................................................ 26 0 1 4.00 4 4 0 0 0 0 0
..............................................................................................................................CAGCAACCACGGCCAACGCAACAGG.......... 25 0 1 4.00 4 4 0 0 0 0 0
.................................................................................................................................CAACCACGGCCAACGCAACAGGCGGCA..... 27 0 1 4.00 4 4 0 0 0 0 0
...........................................................................TATTTGATCATGGAGTGATCCTTCCTTT.......................................................... 28 0 1 4.00 4 4 0 0 0 0 0
.............TTTCTGGAGTTCCGTTGCAAAGGAGC.......................................................................................................................... 26 1 1 4.00 4 4 0 0 0 0 0
.....................................................................................................TTTTTCTCAGGCGCATGCACAGCAGC.................................. 26 0 1 4.00 4 4 0 0 0 0 0
.....................................................................................................TTTTTCTCAGGCGCATGCACAGC..................................... 23 0 1 4.00 4 4 0 0 0 0 0
..............TTCTGGATTTCCGTTGCAAAGGAGCA......................................................................................................................... 26 0 1 3.00 3 3 0 0 0 0 0
...............TCTGGATTTCCGTTGCAAAGGAGCAGC....................................................................................................................... 27 0 1 3.00 3 0 1 2 0 0 0
........................................................................................................TTCTCAGGCGCATGCACAGCAGCAG................................ 25 0 1 3.00 3 3 0 0 0 0 0
.............TTTCTGGATTTCCTTTGCAAAGGAGC.......................................................................................................................... 26 1 1 3.00 3 0 0 3 0 0 0
.............................................................................TTTGATCATGGAGTGATCCTTCCTTT.......................................................... 26 0 1 3.00 3 3 0 0 0 0 0
...........................................GGCGCAGGTAAGGATATCGGTGTTTA............................................................................................ 26 0 1 3.00 3 3 0 0 0 0 0
............................TGCAAAGGAGCAGCAGGCGCAG............................................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0
..............................................GCAGGTAAGGATATCGGTGTTTATCGG........................................................................................ 27 0 1 2.00 2 0 0 2 0 0 0
...........................................................................TATTTGATCATGGAGTGATCCTTCC............................................................. 25 0 1 2.00 2 1 0 0 1 0 0
.............................................................................................TCCTTCCTTTTTTCTCAGGCGCATGCACA....................................... 29 0 1 2.00 2 2 0 0 0 0 0
.................................................................................................................................CAACCACGGCCAACGCAACAGGCG........ 24 0 1 2.00 2 2 0 0 0 0 0
.....................................................................TCGGGTTATTTGATCATGGAGTGATCC................................................................. 27 0 1 2.00 2 2 0 0 0 0 0
................................................................................................TTCCTTTTTTCTCAGGCGCATGCACAG...................................... 27 0 1 2.00 2 2 0 0 0 0 0
............................TGCAAAGGAGCAGCAGGCGCAGG.............................................................................................................. 23 0 1 2.00 2 2 0 0 0 0 0
..............TTCTGGATTTCCGTTGCAAAGGAG........................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0
...........................................GGCGCAGGTAAGGATATCGGT................................................................................................. 21 0 1 2.00 2 0 2 0 0 0 0
.............TTTCTGGATTTCCGTTGCAA................................................................................................................................ 20 0 1 2.00 2 0 0 2 0 0 0
.........................................................TATCGGTGTTTATCGGGTTATTTGA............................................................................... 25 0 1 2.00 2 1 1 0 0 0 0
..............................................................................................................................CAGCAACCACGGCCAACGCAACAGGC......... 26 0 1 2.00 2 2 0 0 0 0 0
...............TCTGGATTTCCGTTGCAAAGGAGCAGCA...................................................................................................................... 28 0 1 2.00 2 1 0 1 0 0 0
....................................................................................................................TGCACAGCAGCAGCAACCACGG....................... 22 0 1 2.00 2 2 0 0 0 0 0
.....................................................................................................TTTTTCTCAGGCGCATGCACAGCAGCAG................................ 28 0 1 2.00 2 2 0 0 0 0 0
................................................................................................TTCCTTTTTTCTCAGGCGCATGCACA....................................... 26 0 1 2.00 2 2 0 0 0 0 0
.........................................................TATCGGTGTTTATCGGGTTATTTGATC............................................................................. 27 0 1 2.00 2 2 0 0 0 0 0
.............................................................................TTTGATCATGGAGTGATCCTTCC............................................................. 23 0 1 2.00 2 2 0 0 0 0 0
.........TAAATTTCTGGATTTCCGTTGCAAAGG............................................................................................................................. 27 0 1 2.00 2 2 0 0 0 0 0
...........................................................................................................TCAGGCGCATGCACAGCAGCAGCAAC............................ 26 0 1 2.00 2 2 0 0 0 0 0
.............TTTCTGGATTTCCGTTGCAAAGGAGA.......................................................................................................................... 26 1 1 2.00 2 1 1 0 0 0 0
.................................................................................................................................CAACCACGGCCAACGCAACAGGCGG....... 25 0 1 2.00 2 2 0 0 0 0 0
..............TTCTGGATTTCCGTTGCAAAGGA............................................................................................................................ 23 0 1 2.00 2 2 0 0 0 0 0
..............................................................GTGTTTATCGGGTTATTTGATCATGGA........................................................................ 27 0 1 2.00 2 2 0 0 0 0 0
.............................................................................................................................GCAGCAACCACGGCCAACGCAACAGGCG........ 28 0 1 1.00 1 1 0 0 0 0 0
.......................TCCGTTGCAAAGGAGCAGCAGGCGC................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
.......GTTAAATTTCTGGATTTCCGTTGCAA................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0
..............GTCTGGATTTCCGTTGCAAAGGAG........................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
.............................................................................GTTGATCATGGAGTGATCCTTCCTT........................................................... 25 1 1 1.00 1 1 0 0 0 0 0
.............TTTCTGGATTTCCGTTGCAAACGAGC.......................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0
.................................................GGTAAGGATATCGGTGTTTATCGGGT...................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.............TTTCTGGATTTTCGTTGCAAAGGAGCA......................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................TGATCCTTCCTTTTTTCTCAGGCGCA............................................. 26 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................TTTTCTCAGGCGCATGCACAGCAG................................... 24 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................GGCCAACGCAACAGGCGGCA..... 20 0 1 1.00 1 1 0 0 0 0 0
................CTGGATTTCCGTTGCAAAG.............................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0
........................................GCAGGCGCAGGTAAGGATATCGGTG................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0
..................................................................................................................CATGCACAGCAGCAGCAACCACG........................ 23 0 1 1.00 1 1 0 0 0 0 0
...................................................TAAGGATATCGGTGTTTATCGGGG...................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
......................TTCCGTTGCAAAGGAGCAGCAG..................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
.................................................................TTTATCGGGTTATTTGATCATGGAG....................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................CAACCACGGCCAACGCAACAGGC......... 23 0 1 1.00 1 1 0 0 0 0 0
................CTGGATTTGCGTTGCAAAGGAGC.......................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
........................................................................................................TTCTCAGGCGCATGCACAGCAGCAGC............................... 26 0 1 1.00 1 1 0 0 0 0 0
......................TTCCGTTGCAAAGGAGCAGCAGG.................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
.............TTTCTGGATTTCTGTTGCAAAGGAGC.......................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0
.....................................................................TCGGGTTATTTGATCATGGAGTGA.................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................TTTTCTCAGGCGCATGCACAGCAGCA................................. 26 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................TGATCCTTCCTTTTTTCTCAGGCGCAT............................................ 27 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................TTCTCAGGAGCATGCACAGCAGCAG................................ 25 1 1 1.00 1 1 0 0 0 0 0
.........................................................TATCGGTGTTTATCGGGTTATTTGAT.............................................................................. 26 0 1 1.00 1 1 0 0 0 0 0
..................................................................TTATCGGGTTATTTGATCATGGAG....................................................................... 24 0 1 1.00 1 0 1 0 0 0 0
.............TTTCTGGATTTCCGTTGCAAAGGAGTT......................................................................................................................... 27 2 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................GCACAGCAGCAGCAACCACGGCCA.................... 24 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................CCTTTTTTCTCAGGCGCATGCACAGCA.................................... 27 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................CACAGCAGCAGCAACCACGGCCAA................... 24 0 1 1.00 1 0 1 0 0 0 0
........................................................................................................TTCTCAGGCGCATGCACAGCAGCAA................................ 25 1 1 1.00 1 0 0 0 1 0 0
...............................................................TGTTTATCGGGTTATTTGATCATGGA........................................................................ 26 0 1 1.00 1 1 0 0 0 0 0
...................................................TAAGGATATCGGTGTTTATCGGGTTGG................................................................................... 27 2 1 1.00 1 1 0 0 0 0 0
............ATTTCTGGATTTCCGTTGCAAAGGA............................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0
......................................................GGATATCGGTGTTTATCGGGTTATT.................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
................................................AGGTAAGGATATCGGTGTTTATCGGG....................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
..............................................................GTGTTTATCGGGTTATTTGATCATGG......................................................................... 26 0 1 1.00 1 0 1 0 0 0 0
...................................................TAAGGATATCGGTGTTTATCGGGTA..................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
.............TTTCTGGATTTCCGTTGCAAAGGAGCAA........................................................................................................................ 28 1 1 1.00 1 1 0 0 0 0 0
...............................................CAGGTAAGGATATCGGTGTTTATCGGGT...................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
...........................................GGCGCAGGTAAGGATATCGGTGTT.............................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0
............................TGCAAAGGAGCAGCAGGCGCAGGTA............................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................TTTTTCTCTGGCGCATGCACATCAGCAG................................ 28 2 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................CACGGCCAACGCAACAGGCGGCAA.... 24 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................CAACCACGGCCAACGCAACAGGCGGC...... 26 0 1 1.00 1 1 0 0 0 0 0
.............TTTCTGGATTTCCGTTGCAAAG.............................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0
................................................................GTTTATCGGGTTATTTGATCAT........................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................TTTTTCTCAGGCGCATGCACA....................................... 21 0 1 1.00 1 1 0 0 0 0 0
...............TCTGGATTTCCGTTGCAAAGGA............................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0
.............TTTCTGGATTTCCGTTGCAAAGGATC.......................................................................................................................... 26 1 1 1.00 1 0 0 1 0 0 0
............ATTTCTGGATTTCCGTTGCAAAGGAG........................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................TTCTCAGGCGCATGCACAGCAGCAGCA.............................. 27 0 1 1.00 1 1 0 0 0 0 0
...................................................TAAGGATATCGGTGTTTATCGGGTTA.................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.............TTTCTGGACTTCCGTTGCAAAGGAG........................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................CAACCACGGCCAACGCAACAGGCGGCAC.... 28 0 1 1.00 1 1 0 0 0 0 0
.............TTTCTGGATTTCCGTTACAAAGGAGC.......................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0
....................................................AAGGATATGGGTGTTTATCGGGT...................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................................GTGCACAGAAGCAGCAACCACG........................ 22 2 1 1.00 1 1 0 0 0 0 0
............................................................CGGTGTTTATCGGGTTATTTGATCA............................................................................ 25 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................TCAGGCGCATGCACAGCAGCAGCAA............................. 25 0 1 1.00 1 1 0 0 0 0 0
.....................TTTCCGTTGCAAAGGAGCAGCAG..................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
..............TTCTGGATTTCCTTTGCAAAGGA............................................................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0
.............CTTCTGGATTTCCGTTGCAAAGGAGC.......................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0
..............TTCTGGATTTCCGTTGCAAAGG............................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0
............................................................................ATTTGATCATGGAGTGATCCTTCCT............................................................ 25 0 1 1.00 1 1 0 0 0 0 0
.............TTTCTGGATTTCCGTTGCAAA............................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................TTTTTCTCGGGCGCATGCACAGCA.................................... 24 1 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................GGCCAACGCAACAGGCGGCACA... 22 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................TCTCAGGCGCATGCACAGCAGCAGC............................... 25 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................TCCTTCCTTTTTTCTCAGGCGCATGCAC........................................ 28 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................ATGCACAGCAGCAGCAACCACGG....................... 23 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................AGCAACCACGGCCAACGCAACAGG.......... 24 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................CAACCACGGCCAACGCAACAG........... 21 0 1 1.00 1 1 0 0 0 0 0
...............................................................................TGATCATGGAGTGATCCTTCCTTT.......................................................... 24 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................GGCGCATGCACAGCAGCAGCAACCA.......................... 25 0 1 1.00 1 1 0 0 0 0 0
.............................................................................TTTGATCATGGAGTGATCCTTCCTT........................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.............TTTCTGGATTTCCGTTGCAAAGGAACAG........................................................................................................................ 28 1 1 1.00 1 1 0 0 0 0 0
...................................................TAAGGATATCGGTGTTTATCGG........................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0
..................................................................................TCATGGAGTGATCCTTCCTTTTTTC...................................................... 25 0 1 1.00 1 1 0 0 0 0 0
................................................................GTTTATCGGGTTATTTGATCATGGAG....................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.............TTTCTGGATTTCCGTTGCAAAGGAAC.......................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0
...........................................GGCGCAGGTAAGGATATCGGTGTTT............................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................TGATCCTTCCTTTTTTCTCAGGCGC.............................................. 25 0 1 1.00 1 1 0 0 0 0 0
..............................................................TGTTTTATCGGGTTATTTGATCATGGAGT...................................................................... 29 3 1 1.00 1 1 0 0 0 0 0
.............................................................................TTTGATCATGGAGTGATCCTTCCTTTT......................................................... 27 0 1 1.00 1 0 0 0 1 0 0
.......................................................................................................TTTCTCAGGCGCATGCACAGCAGCAG................................ 26 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCTCAGGCGCATGCACAGCAG................................... 23 0 1 1.00 1 1 0 0 0 0 0
..................................................................................TCATGGAGTGATCCTTCCTTT.......................................................... 21 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................CAGCAACCACGGCCAACGCAACAGGCG........ 27 0 1 1.00 1 1 0 0 0 0 0
...............................................CAGGTAAGGATATCGGTGTTTATCGGG....................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................TGCACAGCAGCAGCAACCACGT....................... 22 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................CCTTCCTTTTTTCTCAGGCGCATGCACA....................................... 28 0 1 1.00 1 1 0 0 0 0 0
..............TTCTGGATGTCCGTTGCAAAGGA............................................................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0
.............................................................................TTTGATCATGGAGTGATCCTTC.............................................................. 22 0 1 1.00 1 1 0 0 0 0 0
................................................................GTTTATCGGGTTATTTGATCATG.......................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................TTTTTCTCAGGCGCATGCACAG...................................... 22 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................CGCATGCACAGCAGCAGCAACCACGGC...................... 27 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................AGCAACCACGGCCAACGCAACAGGC......... 25 0 1 1.00 1 1 0 0 0 0 0
.........................................................TATCGGTGTTTATCGGGTTATTTG................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0
...................................................TAAGGATATCGGTGTTTATCGGTTT..................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
.............TTTCTGGACTTCCGTTGCAAAGGAGA.......................................................................................................................... 26 2 1 1.00 1 1 0 0 0 0 0
...............TCTGGATTTCCGTTGCAAAGGAG........................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
...........................TTGCAAAGAAGCAGCAGGCGCAGG.............................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
............................................GCGCAGGTAAGGATATCGGTGTTTA............................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0
.........TAAATTTCTGGATTTCCGTTGCAAA............................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.............TTTCTGGATTTCCGCTGCAAAGGAGC.......................................................................................................................... 26 1 1 1.00 1 0 0 1 0 0 0
.......................................................................................................TTTCTCAGGCGCATGCACAGCAGC.................................. 24 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................TTTTCTCAGGCGCATGCACAGCA.................................... 23 0 1 1.00 1 1 0 0 0 0 0
....CATGTTAAATTTCTGGATTTCCGT..................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................TGCACAGCAGCAGCAACCACG........................ 21 0 1 1.00 1 1 0 0 0 0 0
...................................................TAAGGATAGCGGTGTTTATCGGGT...................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................AACCACGGCCAACGCAACAGGCGGC...... 25 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................CACAGCAGCAGCAACCACGGCCAACG................. 26 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................CTCAGGCGCATGCACAGCAGC.................................. 21 0 1 1.00 1 1 0 0 0 0 0
...............................................................TGTTTATCGGGTTATTTGATCATGGAGT...................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................GATCCTTCCTTTTTTCTCAGGCGT.............................................. 24 1 1 1.00 1 1 0 0 0 0 0
.............TTTCTGGATTTCCGTTGCAAAGGCGC.......................................................................................................................... 26 1 1 1.00 1 0 0 1 0 0 0
...........................................................................................................TCAGGCGCGTGCACAGCAGCAG................................ 22 1 1 1.00 1 1 0 0 0 0 0
...............................................................................TGATCATGGAGTGATCCTTCCTTTT......................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.............TTTCTGGAGTTCCGTTGCAAAGGAGCA......................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0
.............TTTCTGGAGTTCCGTTGCAAAGGAG........................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
.............TTTCTGGACTTCCGTTGCAAAGG............................................................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
.........................................................TATCGGTGTTTATCGGGTTATTTGATCA............................................................................ 28 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................AACGCAACAGGCGGCACA... 18 0 2 0.50 1 1 0 0 0 0 0
.............GTTCTGGATTTCCGTTGC.................................................................................................................................. 18 1 2 0.50 1 1 0 0 0 0 0
...........................................................................................................................................CAACACAACAGGCGGTAC.... 18 2 6 0.33 2 0 0 2 0 0 0
............................................................................................................................AGCAGGAACCACGGCAAGCG................. 20 3 11 0.09 1 1 0 0 0 0 0
..................................................................................................................................ACTCACGGCCGACGCAACA............ 19 3 15 0.07 1 0 0 0 0 1 0

Anti-sense strand reads

TGCTGTACAATTTAAAGACCTAAAGGCAACGTTTCCTCGTCGTCCGCGTCCATTCCTATAGCCACAAATAGCCCAATAAACTAGTACCTCACTAGGAAGGAAAAAAGAGTCCGCGTACGTGTCGTCGTCGTTGGTGCCGGTTGCGTTGTCCGCCGTGTCGG
**********************************************************.((((((.((.(((...(((((.....)))))))).))...)))))).....*************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V111
male body
TGCTGTACAATTTAAAGACCTAA.......................................................................................................................................... 23 0 1 4.00 4 4 0
.GCTGTACAATTTAAAGACCTAA.......................................................................................................................................... 22 0 1 3.00 3 3 0
..CTGTACAATTTAAAGACCTAA.......................................................................................................................................... 21 0 1 2.00 2 2 0
.................................................................................................................................GTTGGTGCCGGTTGCGTTGTCCGC........ 24 0 1 1.00 1 1 0
..............................................................................................................................GTCGTTGGTGCCGGTTGCGT............... 20 0 1 1.00 1 1 0
...................................................................................GTACCTCACTAGGAAGGAAAAAAGAGTC.................................................. 28 0 1 1.00 1 1 0
TGCTGTACAATTTAAAGACCTAAA......................................................................................................................................... 24 0 1 1.00 1 1 0
...........................................CCGCGTCCATTCCTATAGCCACAA.............................................................................................. 24 0 1 1.00 1 1 0
AGCTGTACAATTTAAAGACCTA........................................................................................................................................... 22 1 1 1.00 1 1 0
..........................................................................................................................CGTCGTCGTTGGTGCCGGTA................... 20 1 1 1.00 1 1 0
..............................................................................................GGAAGGAAAAAAGAGTCCGCGTACGT......................................... 26 0 1 1.00 1 0 1
.................................................CCATTCCTATAGCCACAAATAGCC........................................................................................ 24 0 1 1.00 1 1 0
.......................................................................................CTCACTAGGAAGGAAAAAAGAGTC.................................................. 24 0 1 1.00 1 1 0
................................................................................................................................CGTTGGTGCCGGTTGCGTT.............. 19 0 1 1.00 1 1 0
..................................................CATTCCTATAGCCACAAATAGCC........................................................................................ 23 0 1 1.00 1 1 0
...........................................................................................................................GTCGTCGTTGGTGCCGGTTGCGT............... 23 0 1 1.00 1 1 0
..................................................................................................................................TTGGTGCCGGTTGCGTTGT............ 19 0 1 1.00 1 1 0
....................................................................................................AAAAAAGAGTTCGCGTAGGT......................................... 20 2 2 0.50 1 1 0
............................................................................................................................................TTGCGTTGTCCGCCGTGTC.. 19 0 2 0.50 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_2:4948791-4948951 - dpe_1070 ACGACATGTTAAATTTCTGGATTTCCGTTGCAAAGGAGCAGCAGGCGCAGGTAAGGATATCGGTGTTTATCGGGTTATTTGATCATGGAGTGATCCTTCCTTTTTTCTCAGGCGCATGCACAGCAGCAGCAACCACGGCCAACGCAACAGGCGGCACAGCC
dp5 2:575089-575209 + CAGGCACA--------------------------------------GCAGGTAAGGGTATCGGTATTTATCGAGATGTTTGATCATTGAATGATCCATT-TTTCCCCTCAGGCGCAGGCACAACAGCAGCAGCAACAACAACAACAGCA-GCAGCAGCAGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
ACGACATGTTAAATTTCTGGATTTCCGTTGCAAAGGAGCAGCAGGCGCAGGTAAGGATATCGGTGTTTATCGGGTTATTTGATCATGGAGTGATCCTTCCTTTTTTCTCAGGCGCATGCACAGCAGCAGCAACCACGGCCAACGCAACAGGCGGCACAGCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............TTTCTGGATTTCCGTTGCAAAGGAGC..........................................................................................................................261165.001653073111149
.............TTTCTGGATTTCCGTTGCAAAGGAG...........................................................................................................................25139.00390371001
...................................................TAAGGATATCGGTGTTTATCGGGT......................................................................................24131.00310220009
.............TTTCTGGATTTCCGTTGCAAAGGA............................................................................................................................24129.00290251003
.....................................................................................................TTTTTCTCAGGCGCATGCACAGCA....................................24129.00290281000
.............TTTCTGGATTTCCGTTGCAAAGGAGCA.........................................................................................................................27123.00230220001
...............................................................TGTTTATCGGGTTATTTGATCATGGAG.......................................................................27119.00190172000
.....................................................................................................TTTTTCTCAGGCGCATGCACAGCAG...................................25115.00150150000
...............TCTGGATTTCCGTTGCAAAGGAGC..........................................................................................................................24112.0012721002
...................................................TAAGGATATCGGTGTTTATCGGG.......................................................................................23110.0010073000
.............TTTCTGGATTTCCGTTGCAAAGGAGCAG........................................................................................................................28110.00100100000
...............................................................TGTTTATCGGGTTATTTGATCATGG.........................................................................2518.008080000
..............TTCTGGATTTCCGTTGCAAAGGAGC..........................................................................................................................2518.008071000
...................................................TAAGGATATCGGTGTTTATCGGGTTATT..................................................................................2817.007000007
...........................................................................TATTTGATCATGGAGTGATCCTTCCTT...........................................................2716.006051000
.............TTTCTGGATTTCCGTTGCAAAGG.............................................................................................................................2315.005050000
....................................................................................................................TGCACAGCAGCAGCAACCACGGCC.....................2415.005050000
....................................................................................................................TGCACAGCAGCAGCAACCACGGC......................2314.004040000
...........................................................................TATTTGATCATGGAGTGATCCTTCCT............................................................2614.004040000
..............................................................................................................................CAGCAACCACGGCCAACGCAACAGG..........2514.004040000
.................................................................................................................................CAACCACGGCCAACGCAACAGGCGGCA.....2714.004040000
...........................................................................TATTTGATCATGGAGTGATCCTTCCTTT..........................................................2814.004040000
.....................................................................................................TTTTTCTCAGGCGCATGCACAGCAGC..................................2614.004040000
.....................................................................................................TTTTTCTCAGGCGCATGCACAGC.....................................2314.004040000
..............TTCTGGATTTCCGTTGCAAAGGAGCA.........................................................................................................................2613.003030000
...............TCTGGATTTCCGTTGCAAAGGAGCAGC.......................................................................................................................2713.003200001
........................................................................................................TTCTCAGGCGCATGCACAGCAGCAG................................2513.003030000
.............................................................................TTTGATCATGGAGTGATCCTTCCTTT..........................................................2613.003030000
...........................................GGCGCAGGTAAGGATATCGGTGTTTA............................................................................................2613.003030000
............................TGCAAAGGAGCAGCAGGCGCAG...............................................................................................................2212.002020000
..............................................GCAGGTAAGGATATCGGTGTTTATCGG........................................................................................2712.002200000
...........................................................................TATTTGATCATGGAGTGATCCTTCC.............................................................2512.002011000
.............................................................................................TCCTTCCTTTTTTCTCAGGCGCATGCACA.......................................2912.002020000
.................................................................................................................................CAACCACGGCCAACGCAACAGGCG........2412.002020000
.....................................................................TCGGGTTATTTGATCATGGAGTGATCC.................................................................2712.002020000
................................................................................................TTCCTTTTTTCTCAGGCGCATGCACAG......................................2712.002020000
............................TGCAAAGGAGCAGCAGGCGCAGG..............................................................................................................2312.002020000
..............TTCTGGATTTCCGTTGCAAAGGAG...........................................................................................................................2412.002020000
...........................................GGCGCAGGTAAGGATATCGGT.................................................................................................2112.002000002
.............TTTCTGGATTTCCGTTGCAA................................................................................................................................2012.002200000
.........................................................TATCGGTGTTTATCGGGTTATTTGA...............................................................................2512.002010001
..............................................................................................................................CAGCAACCACGGCCAACGCAACAGGC.........2612.002020000
...............TCTGGATTTCCGTTGCAAAGGAGCAGCA......................................................................................................................2812.002110000
....................................................................................................................TGCACAGCAGCAGCAACCACGG.......................2212.002020000
.....................................................................................................TTTTTCTCAGGCGCATGCACAGCAGCAG................................2812.002020000
................................................................................................TTCCTTTTTTCTCAGGCGCATGCACA.......................................2612.002020000
.........................................................TATCGGTGTTTATCGGGTTATTTGATC.............................................................................2712.002020000
.............................................................................TTTGATCATGGAGTGATCCTTCC.............................................................2312.002020000
.........TAAATTTCTGGATTTCCGTTGCAAAGG.............................................................................................................................2712.002020000
...........................................................................................................TCAGGCGCATGCACAGCAGCAGCAAC............................2612.002020000
.............TTTCTGGATTTCCGTTGCAAAGGAGA..........................................................................................................................2612.002010001
.................................................................................................................................CAACCACGGCCAACGCAACAGGCGG.......2512.002020000
..............TTCTGGATTTCCGTTGCAAAGGA............................................................................................................................2312.002020000
..............................................................GTGTTTATCGGGTTATTTGATCATGGA........................................................................2712.002020000
.............................................................................................................................GCAGCAACCACGGCCAACGCAACAGGCG........2811.001010000
.......................TCCGTTGCAAAGGAGCAGCAGGCGC.................................................................................................................2511.001010000
.......GTTAAATTTCTGGATTTCCGTTGCAA................................................................................................................................2611.001010000
.................................................GGTAAGGATATCGGTGTTTATCGGGT......................................................................................2611.001010000
..........................................................................................TGATCCTTCCTTTTTTCTCAGGCGCA.............................................2611.001010000
......................................................................................................TTTTCTCAGGCGCATGCACAGCAG...................................2411.001010000
........................................................................................................................................GGCCAACGCAACAGGCGGCA.....2011.001010000
................CTGGATTTCCGTTGCAAAG..............................................................................................................................1911.001010000
........................................GCAGGCGCAGGTAAGGATATCGGTG................................................................................................2511.001000001
..................................................................................................................CATGCACAGCAGCAGCAACCACG........................2311.001010000
...................................................TAAGGATATCGGTGTTTATCGGGG......................................................................................2411.001010000
......................TTCCGTTGCAAAGGAGCAGCAG.....................................................................................................................2211.001010000
.................................................................TTTATCGGGTTATTTGATCATGGAG.......................................................................2511.001010000
.................................................................................................................................CAACCACGGCCAACGCAACAGGC.........2311.001010000
........................................................................................................TTCTCAGGCGCATGCACAGCAGCAGC...............................2611.001010000
......................TTCCGTTGCAAAGGAGCAGCAGG....................................................................................................................2311.001010000
.....................................................................TCGGGTTATTTGATCATGGAGTGA....................................................................2411.001010000
......................................................................................................TTTTCTCAGGCGCATGCACAGCAGCA.................................2611.001010000
..........................................................................................TGATCCTTCCTTTTTTCTCAGGCGCAT............................................2711.001010000
.........................................................TATCGGTGTTTATCGGGTTATTTGAT..............................................................................2611.001010000
..................................................................TTATCGGGTTATTTGATCATGGAG.......................................................................2411.001000001
.............TTTCTGGATTTCCGTTGCAAAGGAGTT.........................................................................................................................2711.001010000
.....................................................................................................................GCACAGCAGCAGCAACCACGGCCA....................2411.001010000
..................................................................................................CCTTTTTTCTCAGGCGCATGCACAGCA....................................2711.001010000
......................................................................................................................CACAGCAGCAGCAACCACGGCCAA...................2411.001000001
........................................................................................................TTCTCAGGCGCATGCACAGCAGCAA................................2511.001001000
...............................................................TGTTTATCGGGTTATTTGATCATGGA........................................................................2611.001010000
...................................................TAAGGATATCGGTGTTTATCGGGTTGG...................................................................................2711.001010000
............ATTTCTGGATTTCCGTTGCAAAGGA............................................................................................................................2511.001010000
......................................................GGATATCGGTGTTTATCGGGTTATT..................................................................................2511.001010000
................................................AGGTAAGGATATCGGTGTTTATCGGG.......................................................................................2611.001010000
..............................................................GTGTTTATCGGGTTATTTGATCATGG.........................................................................2611.001000001
...................................................TAAGGATATCGGTGTTTATCGGGTA.....................................................................................2511.001010000
.............TTTCTGGATTTCCGTTGCAAAGGAGCAA........................................................................................................................2811.001010000
...............................................CAGGTAAGGATATCGGTGTTTATCGGGT......................................................................................2811.001010000
...........................................GGCGCAGGTAAGGATATCGGTGTT..............................................................................................2411.001010000
............................TGCAAAGGAGCAGCAGGCGCAGGTA............................................................................................................2511.001010000
.....................................................................................................................................CACGGCCAACGCAACAGGCGGCAA....2411.001010000
.................................................................................................................................CAACCACGGCCAACGCAACAGGCGGC......2611.001010000
.............TTTCTGGATTTCCGTTGCAAAG..............................................................................................................................2211.001000001
................................................................GTTTATCGGGTTATTTGATCAT...........................................................................2211.001010000
.....................................................................................................TTTTTCTCAGGCGCATGCACA.......................................2111.001010000
...............TCTGGATTTCCGTTGCAAAGGA............................................................................................................................2211.001010000
............ATTTCTGGATTTCCGTTGCAAAGGAG...........................................................................................................................2611.001010000
........................................................................................................TTCTCAGGCGCATGCACAGCAGCAGCA..............................2711.001010000
...................................................TAAGGATATCGGTGTTTATCGGGTTA....................................................................................2611.001010000
.................................................................................................................................CAACCACGGCCAACGCAACAGGCGGCAC....2811.001010000
............................................................CGGTGTTTATCGGGTTATTTGATCA............................................................................2511.001010000
...........................................................................................................TCAGGCGCATGCACAGCAGCAGCAA.............................2511.001010000
.....................TTTCCGTTGCAAAGGAGCAGCAG.....................................................................................................................2311.001010000
..............TTCTGGATTTCCGTTGCAAAGG.............................................................................................................................2211.001000001
............................................................................ATTTGATCATGGAGTGATCCTTCCT............................................................2511.001010000
.............TTTCTGGATTTCCGTTGCAAA...............................................................................................................................2111.001010000
........................................................................................................................................GGCCAACGCAACAGGCGGCACA...2211.001010000
.........................................................................................................TCTCAGGCGCATGCACAGCAGCAGC...............................2511.001010000
.............................................................................................TCCTTCCTTTTTTCTCAGGCGCATGCAC........................................2811.001010000
...................................................................................................................ATGCACAGCAGCAGCAACCACGG.......................2311.001010000
...............................................................................................................................AGCAACCACGGCCAACGCAACAGG..........2411.001010000
.................................................................................................................................CAACCACGGCCAACGCAACAG...........2111.001010000
...............................................................................TGATCATGGAGTGATCCTTCCTTT..........................................................2411.001010000
..............................................................................................................GGCGCATGCACAGCAGCAGCAACCA..........................2511.001010000
.............................................................................TTTGATCATGGAGTGATCCTTCCTT...........................................................2511.001010000
...................................................TAAGGATATCGGTGTTTATCGG........................................................................................2211.001010000
..................................................................................TCATGGAGTGATCCTTCCTTTTTTC......................................................2511.001010000
................................................................GTTTATCGGGTTATTTGATCATGGAG.......................................................................2611.001010000
...........................................GGCGCAGGTAAGGATATCGGTGTTT.............................................................................................2511.001010000
..........................................................................................TGATCCTTCCTTTTTTCTCAGGCGC..............................................2511.001010000
.............................................................................TTTGATCATGGAGTGATCCTTCCTTTT.........................................................2711.001001000
.......................................................................................................TTTCTCAGGCGCATGCACAGCAGCAG................................2611.001010000
.......................................................................................................TTTCTCAGGCGCATGCACAGCAG...................................2311.001010000
..................................................................................TCATGGAGTGATCCTTCCTTT..........................................................2111.001010000
..............................................................................................................................CAGCAACCACGGCCAACGCAACAGGCG........2711.001010000
...............................................CAGGTAAGGATATCGGTGTTTATCGGG.......................................................................................2711.001010000
....................................................................................................................TGCACAGCAGCAGCAACCACGT.......................2211.001010000
..............................................................................................CCTTCCTTTTTTCTCAGGCGCATGCACA.......................................2811.001010000
.............................................................................TTTGATCATGGAGTGATCCTTC..............................................................2211.001010000
................................................................GTTTATCGGGTTATTTGATCATG..........................................................................2311.001010000
.....................................................................................................TTTTTCTCAGGCGCATGCACAG......................................2211.001010000
................................................................................................................CGCATGCACAGCAGCAGCAACCACGGC......................2711.001010000
...............................................................................................................................AGCAACCACGGCCAACGCAACAGGC.........2511.001010000
.........................................................TATCGGTGTTTATCGGGTTATTTG................................................................................2411.001010000
...............TCTGGATTTCCGTTGCAAAGGAG...........................................................................................................................2311.001010000
............................................GCGCAGGTAAGGATATCGGTGTTTA............................................................................................2511.001010000
.........TAAATTTCTGGATTTCCGTTGCAAA...............................................................................................................................2511.001010000
.......................................................................................................TTTCTCAGGCGCATGCACAGCAGC..................................2411.001010000
......................................................................................................TTTTCTCAGGCGCATGCACAGCA....................................2311.001010000
....CATGTTAAATTTCTGGATTTCCGT.....................................................................................................................................2411.001010000
....................................................................................................................TGCACAGCAGCAGCAACCACG........................2111.001010000
..................................................................................................................................AACCACGGCCAACGCAACAGGCGGC......2511.001010000
......................................................................................................................CACAGCAGCAGCAACCACGGCCAACG.................2611.001010000
..........................................................................................................CTCAGGCGCATGCACAGCAGC..................................2111.001010000
...............................................................TGTTTATCGGGTTATTTGATCATGGAGT......................................................................2811.001010000
...........................................................................................GATCCTTCCTTTTTTCTCAGGCGT..............................................2411.001010000
...............................................................................TGATCATGGAGTGATCCTTCCTTTT.........................................................2511.001010000
.........................................................TATCGGTGTTTATCGGGTTATTTGATCA............................................................................2811.001010000
............................................................................................................................................AACGCAACAGGCGGCACA...1820.501010000
dp5
CAGGCACA--------------------------------------GCAGGTAAGGGTATCGGTATTTATCGAGATGTTTGATCATTGAATGATCCATT-TTTCCCCTCAGGCGCAGGCACAACAGCAGCAGCAACAACAACAACAGCA-GCAGCAGCAGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................ACAACAACAACAGCA-GCAGC......20200.1530300000000
...............................................................................................................................AGCAGCAACAACAACAACAGCA-...........22200.1530300000000
........................................................................................................................................AACAACAACAGCA-GCAGCAGC...21200.1530210000000
..........................................................................................................................ACAGCAGCAGCAACAACAACAACAGC.............2690.1110001000000
...........................................................................................................................................AACAACAGCA-GCAGCAGCAGC21200.1020200000000
.......................................................................................................................................CAACAACAACAGCA-GCAGCAGC...22200.1020000200000
................................................................................................................................GCAGCAACAACAACAACAGC.............20200.1020200000000
.................................................................................................................................CAGCAACAACAACAACAGCA-...........20200.0510100000000
.........................................................................................................................AACAGCAGCAGCAACAACAAC...................21200.0510010000000
..........................................................................................................................ACAGCAGCAGCAACAACAACA..................21200.0510000001000
.....................................................................................................................................AACAACAACAACAGCA-GCAGCAG....23200.0510100000000
...........................................................................................................................CAGCAGCAGCAACAACAACA..................20200.0510010000000
................................................................................................................................GCAGCAACAACAACAACAGCA-...........21200.0510010000000
....................................................................................................................................CAACAACAACAACAGCA-GCAGCAG....24200.0510100000000
........................................................................................................................................AACAACAACAGCA-GCAGCAG....20200.0510000100000
....................................................................................................................................CAACAACAACAACAGCA-GCA........20200.0510100000000
........................................................................................................................................AACAACAACAGCA-GCAGCAGCAGC24200.0510100000000
.........................................................................................................................................ACAACAACAGCA-GCAGCAGCAG.22200.0510100000000
..................................................................................................................................AGCAACAACAACAACAGCA-GCAGC......24200.0510010000000
...................................................................................................................................GCAACAACAACAACAGCA-GCAGCAGT...26200.0510100000000
..............................................................................................................................CAGCAGCAACAACAACAACAGCA-GCA........26200.0510010000000
..........................................................................................................................ACAGCAGCAGCAACAACAAC...................20200.0510001000000
....................................................................................................................................CAACAACAACAACAGCA-GCAGCA.....23200.0510010000000
..................................................................................................................................AGCAACAACAACAACAGCA-GCA........22200.0510010000000
......................................................................................................................................ACAACAACAACAGCA-GCAGCAGCAGC26200.0510001000000
............................................................................................................................AGCAGCAGCAACAACAACAACA...............22200.0510100000000

Generated: 06/08/2015 at 03:41 PM