ID:

dpe_1062

 Coordinate:

scaffold_2:4944152-4944302 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.5 -12.4 -12.3 -12.3

Flybase annnotation

CDS [Dper\GL10670-cds]; exon [dper_GLEANR_10792:4]; intron [Dper\GL10670-in]

No Repeatable elements found

mature
  1. dpe_1062  scaffold_2:4944170-4944193 -
  2. dpe_1069  scaffold_2:4948617-4948640 -
star
  1. scaffold_2:4940393-4940416 -
  2. dpe_1062  scaffold_2:4944229-4944252 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGCTATTTTAGCAATTCAAAGGATTCTTTGATAGCCCATAAAATAAGTAGCGACAGATTGGAGTCCTTGGGCACAGCCCTTGGGCCAAACATTTTTGAAATAATGGTGTATGCTGCGAATCTGCACCCACAAGAGGAGTAATCTTTTGTCTTCACTTCATTGATCATTCACCCAACACTGACATCGCCGCATCACCAACAGCAGCAGCAGCATCTGTGCCACATGTGATCTCCACATCCCCATCTGAGATG
****************************************************************************************************...((((((.((....((((............(((((.(((....))))))))............))))...))))))...))******************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
 V042
embryo
 V111
male body		 V057
head
...............................................................................................................................................................TTGATCATTCACCCAACACTGACA.................................................................... 24 0 2 97.50 195 195 0 0 0 0
...............................................................................................................................................................TTGATCATTCACCCAACACTGACAT................................................................... 25 0 2 55.50 111 108 0 3 0 0
...............................................................................................................................................................TTGATCATTCACCCAACACTGACATCGC................................................................ 28 0 2 48.00 96 95 0 1 0 0
..............................................................................................................................................................ATTGATCATTCACCCAACACTGACA.................................................................... 25 0 2 36.50 73 73 0 0 0 0
...............................................................................................................................................................TTGATCATTCACCCAACACTGACATC.................................................................. 26 0 2 17.50 35 34 0 1 0 0
................................................................................................................................................................TGATCATTCACCCAACACTGACATCGC................................................................ 27 0 2 10.00 20 20 0 0 0 0
..............................................................................................................................................................ATTGATCATTCACCCAACACTGACAT................................................................... 26 0 2 8.50 17 17 0 0 0 0
................................................................................................................................................................TGATCATTCACCCAACACTGACA.................................................................... 23 0 2 8.50 17 17 0 0 0 0
...............................................................................................................................................................TTGATCATTCACCCAACACTGACATCG................................................................. 27 0 2 8.50 17 17 0 0 0 0
......................................TAAAATAAGTAGCGACAGATTGGAG............................................................................................................................................................................................ 25 0 3 8.33 25 22 0 1 2 0
...............................................................................................................................................................................................................................TGTGATCTCCACATCCCCATCTGAGA.. 26 0 2 7.00 14 14 0 0 0 0
....................................................................................................TAATGGTGTATGCTGCGAATCTGC............................................................................................................................... 24 0 2 7.00 14 13 0 1 0 0
....................................................................................................TAATGGTGTATGCTGCGAATCTGCAC............................................................................................................................. 26 0 2 6.00 12 12 0 0 0 0
.......................................................................................................................................................TCACTTCATTGATCATTCACCCAACAC......................................................................... 27 0 2 5.00 10 10 0 0 0 0
.............................................................................................................................................................CATTGATCATTCACCCAACACTGACA.................................................................... 26 0 2 5.00 10 10 0 0 0 0
...........................................................................................................................................................TTCATTGATCATTCACCCAACACTGACA.................................................................... 28 0 2 4.50 9 9 0 0 0 0
...............................................................................................................................................................TTGATCATGCACCCAACACTGACATCGC................................................................ 28 1 2 4.00 8 8 0 0 0 0
...........................................TAAGTAGCGACAGATTGGAGTCCT........................................................................................................................................................................................ 24 0 3 3.67 11 4 0 1 6 0
.............................................................................................TTTGAAATAATGGTGTATGCTGCGAAT................................................................................................................................... 27 0 2 3.50 7 7 0 0 0 0
.......................................................................................................................TCTGCACCCACAAGAGGAGTAATCTTT......................................................................................................... 27 0 1 3.00 3 0 3 0 0 0
.............................................................................................TTTGAAATAATGGTGTATGCTGCGAATC.................................................................................................................................. 28 0 2 3.00 6 6 0 0 0 0
....................................................................................................TAATGGTGTATGCTGCGAATCTGCA.............................................................................................................................. 25 0 2 3.00 6 6 0 0 0 0
...............................................................................................................................................................TTGATCATTCACCCAACACTGAC..................................................................... 23 0 2 3.00 6 6 0 0 0 0
...............................................................................................................................................................TTGATCATGCACCCAACACTGACA.................................................................... 24 1 2 3.00 6 6 0 0 0 0
................................................................................................................................................................TGATCATTCACCCAACACTGACAT................................................................... 24 0 2 3.00 6 6 0 0 0 0
...............................................................................................................................................................................................TCACCAACAGCAGCAGCAGCATCTG................................... 25 0 3 2.67 8 8 0 0 0 0
....................................................................................................TAATGGTGTATGCTGCGAATCTG................................................................................................................................ 23 0 2 2.50 5 5 0 0 0 0
..............................................................................................................................................................ATTGATCATTCACCCAACACTGACATC.................................................................. 27 0 2 2.50 5 5 0 0 0 0
..............................................................................................................................................................ATTGATCAGTCACCCAACACTGACA.................................................................... 25 1 2 2.50 5 5 0 0 0 0
......................................................................................................................................................................................................................TGTGCCACATGTGATCTCCACATCC............ 25 0 2 2.50 5 5 0 0 0 0
...............................................................................................................................................................TTGATCATTCACCCAACACTGACG.................................................................... 24 1 2 2.50 5 5 0 0 0 0
.......................................................................................................................................................TCACTTCATTGATCATTCACCCAACACTG....................................................................... 29 0 2 2.00 4 0 4 0 0 0
......................................................................................................................................................................................................................TGTGCCACATGTGATCTCCACATCCC........... 26 0 2 2.00 4 4 0 0 0 0
...............................................................................................................................................................TTGATCATGCACCCAACACTGACAT................................................................... 25 1 2 2.00 4 4 0 0 0 0
.............................................................................................TTTGAAATAATGGTGTATGCTGCGAA.................................................................................................................................... 26 0 2 2.00 4 4 0 0 0 0
...................................................................................................................................................................TCATTCACCCAACACTGACATCGCCG.............................................................. 26 0 2 2.00 4 2 2 0 0 0
............................................................................................................................................................TCATTGATCATTCACCCAACACTGACA.................................................................... 27 0 2 2.00 4 4 0 0 0 0
.............................................................................................................................................................CATTGATCATTCACCCAACACTGACAT................................................................... 27 0 2 2.00 4 1 3 0 0 0
............................TGATAGCCCATAAAATAAGTAGCGA...................................................................................................................................................................................................... 25 0 3 1.67 5 5 0 0 0 0
..........................................ATAAGTAGCGACAGATTGGAGTC.......................................................................................................................................................................................... 23 0 3 1.67 5 0 5 0 0 0
...........................................................................................................................................................TTCATTGATCATTCACCCAACACTG....................................................................... 25 0 2 1.50 3 3 0 0 0 0
..............................................................................................................................................................ATTGATCATTCACCCAACACTGACATCGC................................................................ 29 0 2 1.50 3 3 0 0 0 0
...................................................................................................................................................................TCATTCACCCAACACTGACATCGCCGCAT........................................................... 29 0 2 1.50 3 0 3 0 0 0
..............................................................................................................................................................ATTGATCAGTCACCCAACACTGACAT................................................................... 26 1 2 1.50 3 3 0 0 0 0
.............................................................................................................................................................................................................................CATGTGATCTCCACATCCCCATCTG..... 25 0 2 1.50 3 3 0 0 0 0
...............................................................................................................................................................TTGATCATTCACCCAACACTGACATCGCC............................................................... 29 0 2 1.50 3 3 0 0 0 0
...............................................................................................................................................................TTGATCATACACCCAACACTGACAT................................................................... 25 1 2 1.50 3 3 0 0 0 0
...........................................TAAGTAGCGACAGATTGGAGTC.......................................................................................................................................................................................... 22 0 3 1.33 4 1 2 0 1 0
....................................................................................................TAATGGTGTATGCTGCGAATCT................................................................................................................................. 22 0 2 1.00 2 1 0 1 0 0
........................................................................................................................................................CACTTCATTGATCATTCACCCAACAC......................................................................... 26 0 2 1.00 2 2 0 0 0 0
..........................................ATAAGTAGCGACAGATTGGAGT........................................................................................................................................................................................... 22 0 3 1.00 3 0 3 0 0 0
.............................................................................................TTTGAAATAATGGTGTATGCTGC....................................................................................................................................... 23 0 2 1.00 2 1 0 1 0 0
...............................................................................................................................................................TTGATCATTCACCCAACACTGACGTC.................................................................. 26 1 2 1.00 2 2 0 0 0 0
...............................................................................................................................................................................................TCACCAACAGCAGCAGCAGCATCTGT.................................. 26 0 2 1.00 2 2 0 0 0 0
...........................................................................................................................................................................................................................CACATGTGATCTCCACATCCCCATCTG..... 27 0 2 1.00 2 2 0 0 0 0
......................................................................................................................................................................TTCACCCAACACTGACATCGCCGCA............................................................ 25 0 2 1.00 2 2 0 0 0 0
...........................................TAAGTAGCGACAGATTGGAGT........................................................................................................................................................................................... 21 0 3 1.00 3 1 0 0 2 0
...............................................................................................................................................................................................TCACCAACAGCAGCAGCAGCATCTGTGC................................ 28 0 2 1.00 2 2 0 0 0 0
...........................................................................................................................................................................................................................CACATGTGATCTCCACATCCCCATC....... 25 0 2 1.00 2 2 0 0 0 0
...............................................................................................................................................................TTGATCATACACCCAACACTGACATCGC................................................................ 28 1 2 1.00 2 2 0 0 0 0
...........................................TAAGTAGCGACAGATTGGAG............................................................................................................................................................................................ 20 0 3 1.00 3 0 0 0 3 0
....................................................................................................................................................................................................................TCTGTGCCACATGTGATCTCCACA............... 24 0 2 1.00 2 1 1 0 0 0
...............TCAAAGGATTCTTTGATAGCCCATAAAA................................................................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0
................................................................................................................................................................TGATCATTCACCCAACACTGACATCG................................................................. 26 0 2 1.00 2 2 0 0 0 0
......................................................................................................................................................................TTCACCCAACACTGACATCGCC............................................................... 22 0 2 1.00 2 0 2 0 0 0
.....................................................................................................................AATCTGCACCCACAAGAGGAGT................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0
................................................................................................................................................................TGATCATTCACCCAACACTGACATC.................................................................. 25 0 2 1.00 2 2 0 0 0 0
.............................................................................................................................................................................................CATCACCAACAGCAGCAGCAGCATC..................................... 25 0 3 1.00 3 3 0 0 0 0
...............................................................................................................................................................................................................................TGTGATCTCCACATCCCCATCTG..... 23 0 2 1.00 2 2 0 0 0 0
...........................................................................................................................................................TTCATTGAGCATTCACCCAACACTGACA.................................................................... 28 1 2 1.00 2 2 0 0 0 0
......................................................................................................................................................................TTCACCCAACACTGACATCGCCGCAT........................................................... 26 0 2 1.00 2 1 1 0 0 0
...............................................................................................................................................................................................TCACCAACAGCAGCAGCAGCATC..................................... 23 0 3 1.00 3 3 0 0 0 0
...............................................................................................................................................................TTGATCATCCACCCAACACTGACA.................................................................... 24 1 2 1.00 2 2 0 0 0 0
...TATTTTAGCAATTCAAAGGATTCTT............................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0
.......................................................................................................................................................................TCACCCAACACTGACATCGCCGCATC.......................................................... 26 0 2 1.00 2 0 2 0 0 0
...............................................................................................................................................................TTGATCATTCACCCAACACTGACATCA................................................................. 27 1 2 1.00 2 2 0 0 0 0
..................................................................................................................................................................ATCATTCACCCAACACTGACA.................................................................... 21 0 2 1.00 2 2 0 0 0 0
.......................................................................................................................................................................TCACCCAACACTGACATCGCCGCAT........................................................... 25 0 2 1.00 2 0 2 0 0 0
...................................................................................................................................................................TCATTCACCCAACACTGACATCGCCGCA............................................................ 28 0 2 1.00 2 2 0 0 0 0
........................................................................................................................................................................................................................TGCCACATGTGATCTCCACATCCCC.......... 25 0 2 1.00 2 2 0 0 0 0
...............................................................................................................................................................................................TCACCAACAGCAGCAGCAGCATCTGTG................................. 27 0 2 1.00 2 2 0 0 0 0
...........................................TAAGTAGCGACAGATTGGAGTCCTT....................................................................................................................................................................................... 25 0 3 1.00 3 2 0 0 1 0
...............................................................................................................................................................TTGATCATGCACCCAACACTGACATCG................................................................. 27 1 2 1.00 2 2 0 0 0 0
......................................TAAAATAAGTAGCGACAGATTGGA............................................................................................................................................................................................. 24 0 3 1.00 3 3 0 0 0 0
..............................................................................................................................................................ATTGATCATTCACCCAACACTGACATCG................................................................. 28 0 2 1.00 2 2 0 0 0 0
...............................................................................................................................................................TTGATCATACACCCAACACTGACA.................................................................... 24 1 2 1.00 2 2 0 0 0 0
...............................................................................................................................................................TTGATCATTCACCCAACACTGACAA................................................................... 25 1 2 1.00 2 2 0 0 0 0
.......................................................................................................................................................................................TCGCCGCATCACCAACAGCAGCAG............................................ 24 0 3 0.67 2 2 0 0 0 0
......................................TAAAATAAGTAGCGACAGATTGG.............................................................................................................................................................................................. 23 0 3 0.67 2 2 0 0 0 0
..............................................................................................................................................................................................ATCACCAACAGCAGCAGCAGCATCTG................................... 26 0 3 0.67 2 2 0 0 0 0
.................................................................................................................................................................................CTGACATCGCCGCATCACCAACAG.................................................. 24 0 3 0.67 2 0 2 0 0 0
...........................................................................................................................................................................................CGCATCACCAACAGCAGCAGCAGCATC..................................... 27 0 3 0.67 2 1 0 1 0 0
...........................................TAAGTAGCGACAGATTGGAGTCC......................................................................................................................................................................................... 23 0 3 0.67 2 2 0 0 0 0
.......................................................................................................................................................................................TCGCCGCATCACCAACAGCAGCAGCAG......................................... 27 0 3 0.67 2 1 0 1 0 0
.........................................................TTGGAGTCCTTGGGCACAGCCCT........................................................................................................................................................................... 23 0 3 0.67 2 1 0 1 0 0
................................................................................................................................................................................................CACCAACAGCAGCAGCAGCATCTG................................... 24 0 5 0.60 3 3 0 0 0 0
..................................................................................................................................................................ATCATTCACCCAACACTGACATCGC................................................................ 25 0 2 0.50 1 1 0 0 0 0
.......................................................................................................................................................................TCACCCAACACTGACATCGCCGCATCACC....................................................... 29 0 2 0.50 1 0 1 0 0 0
...............................................................................................................................................................TTGACCATTCACCCAACACTGACAT................................................................... 25 1 2 0.50 1 0 0 1 0 0
........................................................................................................................................................................................................................TGCCACATGTGATCTCCACATCCCCA......... 26 0 2 0.50 1 1 0 0 0 0
...................................................................................................................................................................TCATTCACCCAACACTGACATCGCCGC............................................................. 27 0 2 0.50 1 1 0 0 0 0
..............................................................................................................................................................ATTGATCATTCACCCAGCACTGACA.................................................................... 25 1 2 0.50 1 1 0 0 0 0
...............................................................................................................................................................................................................CAGCATCTGTGCCACATGTGATCTCC.................. 26 0 2 0.50 1 1 0 0 0 0
..............................................................................................................................................................................................................................TTGTGATCTCCACATCCCCATCTGAGA.. 27 1 2 0.50 1 1 0 0 0 0
..........................................................................................................................................................CTTCATTGATCATTCACCCAACAC......................................................................... 24 0 2 0.50 1 1 0 0 0 0
......................................................................................................................................................................................................................TGTGCCACCTGTGATCTCCACATCC............ 25 1 2 0.50 1 1 0 0 0 0
.........................................................................................................................................................................................................................GCCACATGTGATCTCCACATCCC........... 23 0 2 0.50 1 1 0 0 0 0
....................................................................................................................................................................................................................TCTGTGCCACATGTGATCTCCACATC............. 26 0 2 0.50 1 1 0 0 0 0
...............................................................................................................................................................TTGATCATTCACCCAACA.......................................................................... 18 0 2 0.50 1 1 0 0 0 0
..............................................................................................................................................................GTTGATCATTCACCCAACACTGACA.................................................................... 25 1 2 0.50 1 1 0 0 0 0
...................................................................................................................................................................................................................................ATCTCCACATCCCCATCTGAG... 21 0 2 0.50 1 1 0 0 0 0
...............................................................................................................................................................TTGATCATTCACCCAACACTGACATTG................................................................. 27 1 2 0.50 1 1 0 0 0 0
........................................................................................................................................................................................................GCAGCAGCGGCATCTGTGCCACATG.......................... 25 1 2 0.50 1 1 0 0 0 0
..................................................................................................................................................................................................................CATCTGTGCCACATGTGATCTTCACA............... 26 1 2 0.50 1 1 0 0 0 0
..............................................................................................................................................................ATTGATCATTCACCCAACAC......................................................................... 20 0 2 0.50 1 1 0 0 0 0
........................................................................................................................................................................................................................TGCCACATGTGATCTCCACATCC............ 23 0 2 0.50 1 1 0 0 0 0
..............................................................................................................................................................ATTGATCAGTCACCCAACACTGACATC.................................................................. 27 1 2 0.50 1 1 0 0 0 0
............................................................................................................................................................TCATTGATCATTCACCCAACACTGACAT................................................................... 28 0 2 0.50 1 1 0 0 0 0
........................................................................................................................................................................................................................TACCACATGTGATCTCCACATCCCCATC....... 28 1 2 0.50 1 1 0 0 0 0
...................................................................TGGGCACAGCCCTTGGGCCAAACAT............................................................................................................................................................... 25 0 2 0.50 1 1 0 0 0 0
..............................................................................................................................................................ATTGATCATTCACCCAACACTGAC..................................................................... 24 0 2 0.50 1 1 0 0 0 0
...............................................................................................................................................................................................................................TGTGATCTCCACATCCCCATCTGAG... 25 0 2 0.50 1 1 0 0 0 0
.............................................................................................TTTGAAATAATGGTGTATGCTGCG...................................................................................................................................... 24 0 2 0.50 1 1 0 0 0 0
...............................................................................................................................................................TTGATCATTCACCCGACACTGACAT................................................................... 25 1 2 0.50 1 0 0 1 0 0
...............................................................................................................................................................GTGATCATTCACCCAACACTGACATCGC................................................................ 28 1 2 0.50 1 1 0 0 0 0
......................................................................................................................................................................................................................GTTGCCACATGTGATCTCCACATCCC........... 26 2 2 0.50 1 1 0 0 0 0
...............................................................................................................................................................TTGATCATTCACCCATCACTGACATCGC................................................................ 28 1 2 0.50 1 1 0 0 0 0
...........................................................................................................................................................TTCATTGAGCATTCACCCAACACTGAC..................................................................... 27 1 2 0.50 1 1 0 0 0 0
........................................................................................................................................................................................................................TGCCACATGTGATCTCCACA............... 20 0 2 0.50 1 1 0 0 0 0
............................................................................................................................................................TCATTGATCATTCACCCAACACT........................................................................ 23 0 2 0.50 1 1 0 0 0 0
...............................................................................................................................................................TTGATCATTCACCCAACACTGGCAT................................................................... 25 1 2 0.50 1 1 0 0 0 0
.....................................................................................................AATGGTGTCTGCTGCGAATCTGCAC............................................................................................................................. 25 1 2 0.50 1 1 0 0 0 0
...........................................................................................................................................................TTCATTGATCATTCACCCAACAC......................................................................... 23 0 2 0.50 1 1 0 0 0 0
.....................................................................................................................................................................................................................CTGTGCCACATGTGATCTCCACA............... 23 0 2 0.50 1 1 0 0 0 0
...............................................................................................................................................................................................................................TGTGATCTCCACATCCCCATCTGAGT.. 26 1 2 0.50 1 1 0 0 0 0
.................................................................................................................................................................................................................................TGATCTCCACATCCCCATCTGA.... 22 0 2 0.50 1 1 0 0 0 0
......................................................................................................................................................................................................................TGTGCCACATGTGATCTCCACATC............. 24 0 2 0.50 1 1 0 0 0 0
...............................................................................................TGAAATAATGGTGTATGCTGCGAATC.................................................................................................................................. 26 0 2 0.50 1 1 0 0 0 0
....................................................................................................TAATGGTGTATGCTGCGAATCTGCACCC........................................................................................................................... 28 0 2 0.50 1 1 0 0 0 0
...................................................................................................................................................GTCTTCACTTCATTGATCATTCACCC.............................................................................. 26 0 2 0.50 1 1 0 0 0 0
.............................................................................................................................................................CATTGATCATTCACCCAACACTGACATC.................................................................. 28 0 2 0.50 1 1 0 0 0 0
.................................................................................................................TGCGAATCTGCACCCACAAGAG.................................................................................................................... 22 0 2 0.50 1 1 0 0 0 0
.....................................................................................................AATGGTGTATGCTGCGAATCTGCAC............................................................................................................................. 25 0 2 0.50 1 1 0 0 0 0
..............................................................................................GTGAAATAATGGTGTATGCTGCGAA.................................................................................................................................... 25 1 2 0.50 1 1 0 0 0 0
..........................................................................................................................................................................CCCAACACTGACATCGCCGCATCACCA...................................................... 27 0 2 0.50 1 1 0 0 0 0
....................................................................................................TAATGGTGTATGCTGCGAATCTGCACCCA.......................................................................................................................... 29 0 2 0.50 1 1 0 0 0 0
....................................................................................................TAATGGTGTATGCTGCGAATCTGCACC............................................................................................................................ 27 0 2 0.50 1 1 0 0 0 0
....................................................................................................TAATGGTGTATGCTGCGAATCTA................................................................................................................................ 23 1 2 0.50 1 1 0 0 0 0
........................................................................................................................................................................................................................TGCCACATGTGATCTCCACATCCCCATC....... 28 0 2 0.50 1 1 0 0 0 0
...............................................................................................................................................................TTGATCATCCACCCAACACTGACAT................................................................... 25 1 2 0.50 1 1 0 0 0 0
...............................................................................................................................................................................................................................GGTGATCTCCACATCCCCATCTGAGA.. 26 1 2 0.50 1 1 0 0 0 0
....................................................................................................................................................................................................................TCTGTGCCACATGTGATCTCCACATCC............ 27 0 2 0.50 1 1 0 0 0 0
....................................................................................................TAATGGTGTATGCTGCGAAA................................................................................................................................... 20 1 2 0.50 1 1 0 0 0 0
.......................................................................................................................................................................TCACCCAACACTGACATCGCCGCA............................................................ 24 0 2 0.50 1 1 0 0 0 0
.............................................................................................TTTGAAATTATGGTGTATGCTGCGA..................................................................................................................................... 25 1 2 0.50 1 1 0 0 0 0
.....................................................................................................................................................................................................ACAGCAGCAGCAGCATCTGTGCC............................... 23 0 2 0.50 1 1 0 0 0 0
............................................................................................TTTTGAAATAATGGTGTATGCTGC....................................................................................................................................... 24 0 2 0.50 1 0 0 1 0 0
....................................................................................................TAATGGTGTATGCTGCGAATCTGCACA............................................................................................................................ 27 1 2 0.50 1 1 0 0 0 0
............................................................................................TTTTGAAATAATGGTGTATGCTGCGAAT................................................................................................................................... 28 0 2 0.50 1 1 0 0 0 0
........................................................................................................................................................................................................................TGCCACATGTGATCTCCACATCCCCATCT...... 29 0 2 0.50 1 1 0 0 0 0
......................................................................................................................................................................................................................TGTGCCACATGTGATCTCCACATCCCCA......... 28 0 2 0.50 1 1 0 0 0 0
........................................................................................................................................................................................................................TGCCACATGTGATCTCCACATCCC........... 24 0 2 0.50 1 1 0 0 0 0
.........................................................................................................................................................................................................................GCCACATGTGATCTCCACATCCCCATC....... 27 0 2 0.50 1 1 0 0 0 0
...............................................................................................................................................................................................................................TGTGATCTGCACATCCCCAT........ 20 1 2 0.50 1 1 0 0 0 0
....................................................................................................................................................................CATTCACCCAACACTGACATCGCCGCA............................................................ 27 0 2 0.50 1 1 0 0 0 0
.......................................................................................................................................................................................................................GTGCCACATGTGATCTCCACA............... 21 0 2 0.50 1 1 0 0 0 0
...............................................................................................................................................................TTGATCATTCACCCAACACTGA...................................................................... 22 0 2 0.50 1 1 0 0 0 0
....................................................................................................AAATGGTGTATGCTGCGAATCTG................................................................................................................................ 23 1 2 0.50 1 1 0 0 0 0
...................................................................................................................................................................TCATTCACCCAACACTGACATCGCC............................................................... 25 0 2 0.50 1 1 0 0 0 0
..............................................................................................................................................................ATTGATCAGTCACCCAACACTGAC..................................................................... 24 1 2 0.50 1 1 0 0 0 0
.................................................................................................................................................................................................................GCATCTGTGCCACATGTGATCTCCA................. 25 0 2 0.50 1 1 0 0 0 0
..................................................................................................................................................................................................................CATCTGTGGCACATGTGATCT.................... 21 1 2 0.50 1 1 0 0 0 0
........................................................................................................................................................................CACCCAACACTGACATCGCCGCAT........................................................... 24 0 2 0.50 1 1 0 0 0 0
.................................................................................................................................................................GATCATTCACCCAACACTGACATCGC................................................................ 26 0 2 0.50 1 1 0 0 0 0
...............................................................................................................................................................TTGATCATTCACCCAACACA........................................................................ 20 1 2 0.50 1 1 0 0 0 0
...............................................................................................TGAAATAATGGTGTATGCTGCGAAT................................................................................................................................... 25 0 2 0.50 1 1 0 0 0 0
...............................................................................................................................................................TTGATCATGCACCCAACACTGACATC.................................................................. 26 1 2 0.50 1 1 0 0 0 0
.......................................................................................................................................................TCACTTCATTGATCATTCACCCAACAG......................................................................... 27 1 2 0.50 1 1 0 0 0 0
.....................................................................................................AATGGTGTATGCTGCGAATCTGCA.............................................................................................................................. 24 0 2 0.50 1 1 0 0 0 0
...............................................................................................................................................................................................TCACCAACAGCAGCAGCAGCATCTGTGCC............................... 29 0 2 0.50 1 1 0 0 0 0
...............................................................................................................................................................................................................CAGCATCTGTGCCACATGTGATCT.................... 24 0 2 0.50 1 1 0 0 0 0
.............................................................................................................................................................CATTGATCATTCACCCAACACTGACAA................................................................... 27 1 2 0.50 1 1 0 0 0 0
.............................................................................................................................................................................................................................CATGTGATCTCCACATCCCCATCTGAG... 27 0 2 0.50 1 1 0 0 0 0
.......................................................................................................................................................................TCACCCAACACTGACATCG................................................................. 19 0 2 0.50 1 1 0 0 0 0
...................................................................................................ATAATGGTGTATGCTGCGAATCTGCACC............................................................................................................................ 28 0 2 0.50 1 1 0 0 0 0
....................................................................................................TAATGGTGGATGCTGCGAATCTGCAC............................................................................................................................. 26 1 2 0.50 1 1 0 0 0 0
...........................................................................................................................................................TTCATTGAACATTCACCCAACACTGACA.................................................................... 28 1 2 0.50 1 1 0 0 0 0
.................................................................................................................................................................GATCATTCACCCAACACTGACATCGCCG.............................................................. 28 0 2 0.50 1 1 0 0 0 0
....................................................................................................................................................................CATTCACCCAACACTGACATCGC................................................................ 23 0 2 0.50 1 1 0 0 0 0
...............................................................................................................................................................TTGATCATGCACCCAACACTGAC..................................................................... 23 1 2 0.50 1 1 0 0 0 0
................................................................................................................................................................................................................AGCATCTGTGCCACATGTGATCTCCAC................ 27 0 2 0.50 1 1 0 0 0 0
..............................................................................................................................................................ATCGATCATTCACCCAACACTGACA.................................................................... 25 1 2 0.50 1 1 0 0 0 0
.............................................................................................TTTGAAATGATGGTGTATGCTGCGAAT................................................................................................................................... 27 1 2 0.50 1 1 0 0 0 0
...............................................................................................................................................................TTGATCATTCACCCAACACT........................................................................ 20 0 2 0.50 1 1 0 0 0 0
.......................................................................................................................................................................GCACCCAACACTGACATCGCCGCA............................................................ 24 1 2 0.50 1 1 0 0 0 0
....................................................................................................................................................TCTTCACTGCATTGATCATTCACCC.............................................................................. 25 1 2 0.50 1 1 0 0 0 0
...............................................................................................................................................................................................................................TGTGATCTGCACATCCCCATCTGA.... 24 1 2 0.50 1 1 0 0 0 0
...........................................................................................................................................................TTCATTGAGCATTCACCCAACACTGA...................................................................... 26 1 2 0.50 1 1 0 0 0 0
..............................................................................................................................................................TTTGATCATTCACCCAACACTGACAT................................................................... 26 1 2 0.50 1 1 0 0 0 0
............................................................................................................................................................................................................................ACATGTGATCTCCACATCCCCATC....... 24 0 2 0.50 1 1 0 0 0 0
................................................................................................................................................................TGATCATTCACCCAACACTGACATCGCC............................................................... 28 0 2 0.50 1 1 0 0 0 0
................................................................................................................................................................TGATCATTTACCCAACACTGACATCG................................................................. 26 1 2 0.50 1 1 0 0 0 0
.................................................................................................................................................................................................................................TGATCTCCACATCCCCATCTGAGA.. 24 0 2 0.50 1 1 0 0 0 0
..............................................................................................................................................................ATTGATCAGTCACCCAACACTGACATCGC................................................................ 29 1 2 0.50 1 1 0 0 0 0
...............................................................................................................................................................................................TCACCAACAGCAGCAGCAGCAT...................................... 22 0 3 0.33 1 1 0 0 0 0
..............................................................................................................................................................................................CTCACCAACAGCAGCAGCAGCATCTG................................... 26 1 3 0.33 1 1 0 0 0 0
........................................................................................................................................................................................CGCCGCATCACCAACAGCAGCAGCAGT........................................ 27 1 3 0.33 1 1 0 0 0 0
................................................AGCGACAGATTGGAGTCCTTGG..................................................................................................................................................................................... 22 0 3 0.33 1 0 0 1 0 0
...........................................TAAGTAGCGACGGATTGGAGTCCT........................................................................................................................................................................................ 24 1 3 0.33 1 0 0 0 1 0
...................................................................................................................................................................................GACATCGCCGCATCACCAACAGCA................................................ 24 0 3 0.33 1 1 0 0 0 0
...........................................................................................................................................................................................CGCATCACCAACAGCAGCAGCAGCA....................................... 25 0 3 0.33 1 1 0 0 0 0
............................................................................................................................................................................................GCATCACCAACAGCAGCAGCAGCATC..................................... 26 0 3 0.33 1 1 0 0 0 0
.........................................AATAAGTAGCGACAGATTGGA............................................................................................................................................................................................. 21 0 3 0.33 1 1 0 0 0 0
...................................CCATAAAATAAGTAGCGACAGATTG............................................................................................................................................................................................... 25 0 3 0.33 1 0 0 0 1 0
............................TGATAGCCGATAAAATAAGTACCGA...................................................................................................................................................................................................... 25 2 3 0.33 1 1 0 0 0 0
...........................................................................................................................................................................................CGCATCACCAACAGCAGCAGCAGC........................................ 24 0 3 0.33 1 1 0 0 0 0
......................................TAAAATAAGTAGCGACAGATTGGAGTCGA........................................................................................................................................................................................ 29 2 3 0.33 1 1 0 0 0 0
............................TGATAGCCCATAAAATAAGTAGCGAC..................................................................................................................................................................................................... 26 0 3 0.33 1 1 0 0 0 0
............................................................................................................................................................................................GCATCACCAACAGCAGCAGCAGCATCTG................................... 28 0 3 0.33 1 1 0 0 0 0
....................................................................................................................................................................................ACATCGCCGCATCACCAACAGCAGCA............................................. 26 0 3 0.33 1 1 0 0 0 0
.......................................................................................................................................................................................TCGCCGCATCACCAACAGCAGCAGCAA......................................... 27 1 3 0.33 1 1 0 0 0 0
...............................................................................................................................................................................................TCACCAACAGCAGCAGCAGCATCT.................................... 24 0 3 0.33 1 1 0 0 0 0
..................................................................................................................................................................................TGACATCGCCGCATCACCAACAGCAG............................................... 26 0 3 0.33 1 1 0 0 0 0
......................................TAAAATAAGTAGCGACAGATTAGAG............................................................................................................................................................................................ 25 1 3 0.33 1 1 0 0 0 0
............................................................................................................................................................................CAACACTGACATCGCCGCATC.......................................................... 21 0 3 0.33 1 1 0 0 0 0
.........................................................TTGGAGTCCTTGGGCACAGCCCTT.......................................................................................................................................................................... 24 0 3 0.33 1 0 0 1 0 0
.......................................................GATTGGAGTCCTTGGGCACAGCCCTT.......................................................................................................................................................................... 26 0 3 0.33 1 1 0 0 0 0
..................................................................................................................................................................................TGACATCGCCGCATCACCAA..................................................... 20 0 3 0.33 1 1 0 0 0 0
......................................TAAAATAAGTAGCGACAGATTGGAA............................................................................................................................................................................................ 25 1 3 0.33 1 1 0 0 0 0
.......................................................................................................................................................................................TCGCCGCAGCACCAACAGCAGCAGCAG......................................... 27 1 3 0.33 1 1 0 0 0 0
..................................................................................................................................................................................TGACATCGCCGCATCACCAACAGC................................................. 24 0 3 0.33 1 1 0 0 0 0
.......................................AAAATAAGTAGCGACAGATTGGA............................................................................................................................................................................................. 23 0 3 0.33 1 1 0 0 0 0
...........................................TAAGTAGCGACAGATTGGAGTCCTTGG..................................................................................................................................................................................... 27 0 3 0.33 1 1 0 0 0 0
...............................................................................................................................................................................................TCACCAACCGCAGCAGCAGCATC..................................... 23 1 3 0.33 1 1 0 0 0 0
......................................TAAAATAAGTAGCGACAGATTGGAGT........................................................................................................................................................................................... 26 0 3 0.33 1 1 0 0 0 0
...............................................TAGCGACAGATTGGAGTCC......................................................................................................................................................................................... 19 0 3 0.33 1 1 0 0 0 0
..........................................ATAAGTAGCGACAGATTGGAG............................................................................................................................................................................................ 21 0 3 0.33 1 0 0 0 1 0
..................................................................................................................................................TGTCTTCACTTCATTGATCATT................................................................................... 22 0 3 0.33 1 1 0 0 0 0
.......................................................................................................................................................................................TCGCCGCATCACCAACAGCAGCAGCAGT........................................ 28 1 3 0.33 1 1 0 0 0 0
............................TGATAGCCCATAAAATAAGTAGCG....................................................................................................................................................................................................... 24 0 3 0.33 1 1 0 0 0 0
...........................................TAAGTAGCGACAGATTGTAGTC.......................................................................................................................................................................................... 22 1 3 0.33 1 0 0 1 0 0
..........................................................................................................TGTATGCTGCGAATCTGCACCCACAA....................................................................................................................... 26 0 4 0.25 1 1 0 0 0 0
..........................................................................................................TGTATGCTGCGAATCTGCACC............................................................................................................................ 21 0 4 0.25 1 1 0 0 0 0
..........................................................................................................TGTATGCTGCGAATCTGCACT............................................................................................................................ 21 1 4 0.25 1 0 1 0 0 0
.........................................AATAAGGATTGACAGATTGG.............................................................................................................................................................................................. 20 3 13 0.15 2 0 2 0 0 0
................................................................................................................................................................................................CACCAACAGCAGCAGCAGCAT...................................... 21 0 8 0.13 1 0 0 1 0 0
..............................................................................................................................................................................................ATCACCAACAGCAGCAGCAG......................................... 20 0 9 0.11 1 1 0 0 0 0
..........................................ATGAGTAGCGAAAGATAGG.............................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 1

Anti-sense strand reads

GCGATAAAATCGTTAAGTTTCCTAAGAAACTATCGGGTATTTTATTCATCGCTGTCTAACCTCAGGAACCCGTGTCGGGAACCCGGTTTGTAAAAACTTTATTACCACATACGACGCTTAGACGTGGGTGTTCTCCTCATTAGAAAACAGAAGTGAAGTAACTAGTAAGTGGGTTGTGACTGTAGCGGCGTAGTGGTTGTCGTCGTCGTCGTAGACACGGTGTACACTAGAGGTGTAGGGGTAGACTCTAC
********************************************************************...((((((.((....((((............(((((.(((....))))))))............))))...))))))...))**************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V111
male body		 M042
female body
 V042
embryo
 M021
embryo
 V057
head
.................................................................................................................................................................................................................CGTAGACACGGTGTACACTAGAGGTGT............... 27 0 2 4.50 9 4 5 0 0 0
...............................................................................................................................................................................................................GTCGTAGACACGGTGTACACT....................... 21 0 2 2.50 5 3 1 1 0 0
..................................................................................................................................................................................................................GTAGACACGGTGTACACTAGAGGTGT............... 26 0 2 1.50 3 2 1 0 0 0
.........................................................................................................................................................................TGGGTTGTGACTGTAGCG................................................................ 18 0 2 1.50 3 3 0 0 0 0
...............................................................................................................................................................................GTGACTGTAGCGGCGTAGTGGTTGT................................................... 25 0 3 1.00 3 3 0 0 0 0
.....................................................................................................................................................................................................................GACACGGTGTACACTAGAGGT................. 21 0 2 1.00 2 0 2 0 0 0
.....................................................................................................................................TCCTCATCAGAATCCAGAAGT................................................................................................. 21 3 1 1.00 1 0 0 0 1 0
.............TAAGTTTCCTAAGAAACTATCGGGT..................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0
.................................................................................................................................................................................................................CGTAGACACGGTGTACACTAGAGGT................. 25 0 2 1.00 2 2 0 0 0 0
...............................................................................................................................................AAAACAGAAGTGAAGTAACTAGTAAG.................................................................................. 26 0 3 1.00 3 2 1 0 0 0
............................................................................................................................TGGGTGTTCTCCTCATTAGA........................................................................................................... 20 0 1 1.00 1 0 0 1 0 0
..................................................................................................................................................ACAGAAGTGAAGTAACTAGTAAG.................................................................................. 23 0 3 1.00 3 0 3 0 0 0
..................TTCCTAAGAAACTATCGGGTATTTTAT.............................................................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0
...............................................................................................................................................................................GTGACTGTAGCGGCGTAGTGGTT..................................................... 23 0 3 0.67 2 2 0 0 0 0
....................................................................................................................................................................................TGTAGCGGCGTAGTGGTTGT................................................... 20 0 3 0.67 2 2 0 0 0 0
...................................................................................................................................................CAGAAGTGAAGTAACTAGTAAG.................................................................................. 22 0 3 0.67 2 0 2 0 0 0
.............................................................................................................................................................................TTGTGACTGTAGCGGCGTAGTGGT...................................................... 24 0 3 0.67 2 2 0 0 0 0
.............................................................................................................................................................................TTGTGACTGTAGCGGCGTAGTGGTT..................................................... 25 0 3 0.67 2 2 0 0 0 0
..............................................................................................................................................................................TGTGACTGTAGCGGCGTAGTGGTT..................................................... 24 0 3 0.67 2 1 1 0 0 0
.............................................................................................................................................AGAAAACAGAAGTGAAGTAACTAGTAA................................................................................... 27 0 3 0.67 2 0 2 0 0 0
.................................................................................................................................................................................GACTGTAGCGGCGTAGTGGTTGT................................................... 23 0 3 0.67 2 2 0 0 0 0
.......................................................................................................................................................................................AGCGGCGTAGTGGTTGTCGTC............................................... 21 0 3 0.67 2 2 0 0 0 0
............................................................................................................................................TAGAAAACAGAAGTGAAGTAACTAGTAA................................................................................... 28 0 3 0.67 2 2 0 0 0 0
................................................................................................................................................................................TGACTGTAGCGGCGTAGTGGTT..................................................... 22 0 3 0.67 2 2 0 0 0 0
................................................................................................................................................................................................................TCGTAGACACGGTGTACACTAGAGGT................. 26 0 2 0.50 1 1 0 0 0 0
....................................................................................................................................................................................................................AGACACGGTGTACACTAGAGGTGT............... 24 0 2 0.50 1 0 1 0 0 0
..................................................................................................................................................ACAGAAGTGAAGTAACTAGTAAGTGGGT............................................................................. 28 0 2 0.50 1 1 0 0 0 0
.........................................................................................................................................................TGAAGTAACTAGTAAGTGGGT............................................................................. 21 0 2 0.50 1 0 1 0 0 0
..............................................................................................................................................................................................................CGTCGTAGACACGGTGTACACTAGAGG.................. 27 0 2 0.50 1 0 1 0 0 0
.............................................................................................................................................................................................................TCGTCGTAGACACGGTGTAC.......................... 20 0 2 0.50 1 1 0 0 0 0
.............................................................................................................................................................................................................................GTACACTAGAGGTGTAGGGGTAGACT.... 26 0 2 0.50 1 1 0 0 0 0
.................................................................................................................................................................................................................................ACTAGAGGTGTAGGGGTAGAC..... 21 0 2 0.50 1 1 0 0 0 0
..............................................................................................................................................................................................................CGTCGTAGACACGGTGTACACTAGAGGT................. 28 0 2 0.50 1 0 1 0 0 0
...............................................................................................................................................................................................................GTCGTAGACACGGTGTACACTAGAGGT................. 27 0 2 0.50 1 1 0 0 0 0
..................................................................................................................................................................................................................GTAGACACGGTGTACACTAGAGGTG................ 25 0 2 0.50 1 0 1 0 0 0
...............................................................................................................................................................................................................GTCGTAGACACGGTGTACACTAGAGG.................. 26 0 2 0.50 1 1 0 0 0 0
...........................................................................................................................................................................................................CGTCGTCGTAGACACGGTGT............................ 20 0 2 0.50 1 0 1 0 0 0
.........................................................................................................................................................................TGGGTTGTGACTGTAGCGGC.............................................................. 20 0 2 0.50 1 1 0 0 0 0
...................................................................................................................................................................................................................TAGACACGGTGTACACTAGAGGTGT............... 25 0 2 0.50 1 0 1 0 0 0
.............................................................................................................................................................................................................TCGTCGTAGACACGGTGTACAC........................ 22 0 2 0.50 1 0 1 0 0 0
....................................................................................................................................................................................................................AGACACGGTGTACACTAGAGGTG................ 23 0 2 0.50 1 0 1 0 0 0
................................................................................ACCCGGTTTGTAAAAACTTTA...................................................................................................................................................... 21 0 2 0.50 1 0 1 0 0 0
..................................................................................................................................................................TAGTAAGTGGGTTGTGACT...................................................................... 19 0 2 0.50 1 1 0 0 0 0
.................................................................................................................................................................................................................CGTAGACACGGTGTACACTAGAGG.................. 24 0 2 0.50 1 1 0 0 0 0
...........................................................................................................................................................................GGTTGTGACTGTAGCGGCG............................................................. 19 0 3 0.33 1 1 0 0 0 0
...................................................................................................................................................................................CTGTAGCGGCGTAGTGGTT..................................................... 19 0 3 0.33 1 0 0 1 0 0
..................................................................................................................................................ACAGAAGTGAAGTAACTAGTAA................................................................................... 22 0 3 0.33 1 0 1 0 0 0
...........................................................................................................................................................................GGTTGTGACTGTAGCGGCGTAG.......................................................... 22 0 3 0.33 1 1 0 0 0 0
.......................................................CTAACCTCAGGAACCCGGGTCGGGAA.......................................................................................................................................................................... 26 1 3 0.33 1 0 1 0 0 0
..............................................................................................................................................GAAAACAGAAGTGAAGTAA.......................................................................................... 19 0 3 0.33 1 0 0 0 1 0
..............................................................................................................................................GAAAACAGAAGTGAAGTAACTAGTAA................................................................................... 26 0 3 0.33 1 1 0 0 0 0
............................................................................................................................................................................CTTGTGACTGTAGCGGCGTAGTGGTT..................................................... 26 1 3 0.33 1 1 0 0 0 0
................................................................................................................................................................................TGACTGTAGCGGCGTAGTGGTTGT................................................... 24 0 3 0.33 1 1 0 0 0 0
.....................................................................................................................................................................................CTAGCGGCGTAGTGGTTGT................................................... 19 1 3 0.33 1 1 0 0 0 0
..............................................................................................................................................................................TGTGACTGTAGCGGCGTAGTGGTTGTC.................................................. 27 0 3 0.33 1 0 1 0 0 0
.....................................................GTCTAACCTCAGGAACCCGTGT................................................................................................................................................................................ 22 0 3 0.33 1 0 1 0 0 0
..............................................................................................................................................................................TGTGACTGTAGCGGCGTAGTG........................................................ 21 0 3 0.33 1 1 0 0 0 0
.................................................................................................................................................AACAGAAGTGAAGTAACTAGTAAG.................................................................................. 24 0 3 0.33 1 0 1 0 0 0
...........................................................................................................................................................................GGTTGTGACTGTAGCGGCGT............................................................ 20 0 3 0.33 1 1 0 0 0 0
..................................................................................................................................................................................AATGTAGCGGCGTAGTGGTTGT................................................... 22 1 3 0.33 1 1 0 0 0 0
...........................................................................................................................................................................GGTTGTGACTGTAGCGGCGTAGT......................................................... 23 0 3 0.33 1 1 0 0 0 0
.............................................................................................................................................AGAAAACAGAAGTGAAGTAACTAGTAAG.................................................................................. 28 0 3 0.33 1 1 0 0 0 0
.......................................................................................................................................................................................................................CTCGGTGTACACTTGATGTGT............... 21 3 3 0.33 1 0 0 0 0 1
........................................................TAACCTCAGGAACCCGTCTCGGGAAC......................................................................................................................................................................... 26 1 3 0.33 1 0 1 0 0 0
...............................................................................................................................................................................ATGACTGTAGCGGCGTAGTGGTTGT................................................... 25 1 3 0.33 1 0 1 0 0 0
..............................................................................................................................................................................CTTGACTGTAGCGGCGTAGTGGTTGT................................................... 26 2 3 0.33 1 1 0 0 0 0
................................................................................................................................................................................TGACTGTAGCGGCGTAGTGGTTGTC.................................................. 25 0 3 0.33 1 0 1 0 0 0
...................................GGTATTTTATTCATCGCTGT.................................................................................................................................................................................................... 20 0 3 0.33 1 0 1 0 0 0
................................................................................................................................................................................CCCCTGTAGCGGCGTAGTGGTTGT................................................... 24 3 4 0.25 1 1 0 0 0 0
...................................................................................................................................................................................CTGTAGCGGCGTAGTGGT...................................................... 18 0 4 0.25 1 0 1 0 0 0
.............................................................................................................................................................................................................................GGACACTAGAGGTGTAATGG.......... 20 3 5 0.20 1 0 0 0 0 1
......................................................................................................................................................................................................................................TGGCGTAGGGGTAGACTCT.. 19 2 6 0.17 1 1 0 0 0 0
...................................................................................................................................................................................CTGTGGCGGCGTAGTGCTT..................................................... 19 2 6 0.17 1 0 0 1 0 0
.............................................................................................................................................................GTAACTCTTCAGTGGGTTGT.......................................................................... 20 3 14 0.07 1 0 0 1 0 0
.........................................................................................................................................................................................................................CGGGGTAGACTAGAGGAGT............... 19 3 16 0.06 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_2:4944102-4944352 - dpe_1062 CGCTATTTTAGCAATTCAAAGGATTCTTTGATAGCCCATAAAATAAGTAGCGACAGATTGGAGTCCTTGGGCACAGCCCTTGGGCCAAACATTTTTGAAATAATGGTGTATGCTGCGAATCTGCACCCACAAGAGGAGTAATCTTTTGTCTTCACTTCATTGATCATTCACCCAACACTGACATCGCCGCATCACCAACAGCAGCAGCAGCATCTGTGCCACATGT-----------------------------------------------GATCTCCACATCCCCATCTGAGATG----------
dp5 3:4747655-4747796 - CGCTATTTTAGCAATTCAAAGGATTCTTTGATAGCCCATAAAATAAGTAGCAACAGATTGGAGTCCTTGGGCACAGCCCTTGGGCCAAACATTTTTGAAATAATGGTGTACGCTGCGAATCTGCACCCACAAGAGGAGCTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491249:1278327-1278396 - G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGTCGCCGCATCAGCAACAGCAGCAGCAACAGCATCACCAGCAAC-----------------------------------------------AGTTGCAGCAGCCACAGC--AGCAG----------
dm3 chr2L:18715012-18715135 - CAGCA--------------------------------------------GCAACAG-------------------------------------------------------------------------------------------------------------------------------CAGCAGCACGACCAACAGCAGCAACAGCAT-------------CAGTCAACCGCAACATCGGCGTCCAGTTCGTGCTCCTCGTCGCGGGACACGCCCACATCCTCGCACGAGGAGGCGGACCATG
droSim2 2l:18270785-18270911 - CAACA--------------------------------------------ACAGCAG-------------------------------------------------------------------------------------------------------------------------------CAGCAGCACGACCAACAGCAGCAGCAGCAGCAC----------CAGTCAACCGCAACATCGGCGTCCAGTTCGTGCTCCTCGTCGCGGGACACGCCCACATCCTCACAGGAGGAGGTGGACCATG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
CGCTATTTTAGCAATTCAAAGGATTCTTTGATAGCCCATAAAATAAGTAGCGACAGATTGGAGTCCTTGGGCACAGCCCTTGGGCCAAACATTTTTGAAATAATGGTGTATGCTGCGAATCTGCACCCACAAGAGGAGTAATCTTTTGTCTTCACTTCATTGATCATTCACCCAACACTGACATCGCCGCATCACCAACAGCAGCAGCAGCATCTGTGCCACATGT-----------------------------------------------GATCTCCACATCCCCATCTGAGATG----------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................................TTGATCATTCACCCAACACTGACA.............................................................................................................................24297.5019501950000
...............................................................................................................................................................TTGATCATTCACCCAACACTGACAT............................................................................................................................25255.5011101083000
...............................................................................................................................................................TTGATCATTCACCCAACACTGACATCGC.........................................................................................................................28248.00960951000
..............................................................................................................................................................ATTGATCATTCACCCAACACTGACA.............................................................................................................................25236.50730730000
...............................................................................................................................................................TTGATCATTCACCCAACACTGACATC...........................................................................................................................26217.50350341000
................................................................................................................................................................TGATCATTCACCCAACACTGACATCGC.........................................................................................................................27210.00200200000
..............................................................................................................................................................ATTGATCATTCACCCAACACTGACAT............................................................................................................................2628.50170170000
................................................................................................................................................................TGATCATTCACCCAACACTGACA.............................................................................................................................2328.50170170000
...............................................................................................................................................................TTGATCATTCACCCAACACTGACATCG..........................................................................................................................2728.50170170000
......................................TAAAATAAGTAGCGACAGATTGGAG.....................................................................................................................................................................................................................................................2538.33250221002
...............................................................................................................................................................................................................................TGT-----------------------------------------------GATCTCCACATCCCCATCTGAGA............2627.00140140000
....................................................................................................TAATGGTGTATGCTGCGAATCTGC........................................................................................................................................................................................2427.00140131000
....................................................................................................TAATGGTGTATGCTGCGAATCTGCAC......................................................................................................................................................................................2626.00120120000
.......................................................................................................................................................TCACTTCATTGATCATTCACCCAACAC..................................................................................................................................2725.00100100000
.............................................................................................................................................................CATTGATCATTCACCCAACACTGACA.............................................................................................................................2625.00100100000
...........................................................................................................................................................TTCATTGATCATTCACCCAACACTGACA.............................................................................................................................2824.509090000
...........................................TAAGTAGCGACAGATTGGAGTCCT.................................................................................................................................................................................................................................................2433.6711041006
.............................................................................................TTTGAAATAATGGTGTATGCTGCGAAT............................................................................................................................................................................................2723.507070000
.......................................................................................................................TCTGCACCCACAAGAGGAGTAATCTTT..................................................................................................................................................................2713.003300000
.............................................................................................TTTGAAATAATGGTGTATGCTGCGAATC...........................................................................................................................................................................................2823.006060000
....................................................................................................TAATGGTGTATGCTGCGAATCTGCA.......................................................................................................................................................................................2523.006060000
...............................................................................................................................................................TTGATCATTCACCCAACACTGAC..............................................................................................................................2323.006060000
................................................................................................................................................................TGATCATTCACCCAACACTGACAT............................................................................................................................2423.006060000
...............................................................................................................................................................................................TCACCAACAGCAGCAGCAGCATCTG............................................................................................2532.678080000
....................................................................................................TAATGGTGTATGCTGCGAATCTG.........................................................................................................................................................................................2322.505050000
..............................................................................................................................................................ATTGATCATTCACCCAACACTGACATC...........................................................................................................................2722.505050000
......................................................................................................................................................................................................................TGTGCCACATGT-----------------------------------------------GATCTCCACATCC......................2522.505050000
...............................................................................................................................................................TTGATCATTCACCCAACACTGACG.............................................................................................................................2422.505050000
.......................................................................................................................................................TCACTTCATTGATCATTCACCCAACACTG................................................................................................................................2922.004400000
......................................................................................................................................................................................................................TGTGCCACATGT-----------------------------------------------GATCTCCACATCCC.....................2622.004040000
.............................................................................................TTTGAAATAATGGTGTATGCTGCGAA.............................................................................................................................................................................................2622.004040000
...................................................................................................................................................................TCATTCACCCAACACTGACATCGCCG.......................................................................................................................2622.004220000
............................................................................................................................................................TCATTGATCATTCACCCAACACTGACA.............................................................................................................................2722.004040000
.............................................................................................................................................................CATTGATCATTCACCCAACACTGACAT............................................................................................................................2722.004310000
............................TGATAGCCCATAAAATAAGTAGCGA...............................................................................................................................................................................................................................................................2531.675050000
..........................................ATAAGTAGCGACAGATTGGAGTC...................................................................................................................................................................................................................................................2331.675500000
...........................................................................................................................................................TTCATTGATCATTCACCCAACACTG................................................................................................................................2521.503030000
..............................................................................................................................................................ATTGATCATTCACCCAACACTGACATCGC.........................................................................................................................2921.503030000
...................................................................................................................................................................TCATTCACCCAACACTGACATCGCCGCAT....................................................................................................................2921.503300000
.............................................................................................................................................................................................................................CATGT-----------------------------------------------GATCTCCACATCCCCATCTG...............2521.503030000
...............................................................................................................................................................TTGATCATTCACCCAACACTGACATCGCC........................................................................................................................2921.503030000
...........................................TAAGTAGCGACAGATTGGAGTC...................................................................................................................................................................................................................................................2231.334210001
....................................................................................................TAATGGTGTATGCTGCGAATCT..........................................................................................................................................................................................2221.002011000
........................................................................................................................................................CACTTCATTGATCATTCACCCAACAC..................................................................................................................................2621.002020000
..........................................ATAAGTAGCGACAGATTGGAGT....................................................................................................................................................................................................................................................2231.003300000
.............................................................................................TTTGAAATAATGGTGTATGCTGC................................................................................................................................................................................................2321.002011000
...............................................................................................................................................................................................TCACCAACAGCAGCAGCAGCATCTGT...........................................................................................2621.002020000
...........................................................................................................................................................................................................................CACATGT-----------------------------------------------GATCTCCACATCCCCATCTG...............2721.002020000
......................................................................................................................................................................TTCACCCAACACTGACATCGCCGCA.....................................................................................................................2521.002020000
...........................................TAAGTAGCGACAGATTGGAGT....................................................................................................................................................................................................................................................2131.003010002
...............................................................................................................................................................................................TCACCAACAGCAGCAGCAGCATCTGTGC.........................................................................................2821.002020000
...........................................................................................................................................................................................................................CACATGT-----------------------------------------------GATCTCCACATCCCCATC.................2521.002020000
...........................................TAAGTAGCGACAGATTGGAG.....................................................................................................................................................................................................................................................2031.003000003
....................................................................................................................................................................................................................TCTGTGCCACATGT-----------------------------------------------GATCTCCACA.........................2421.002110000
...............TCAAAGGATTCTTTGATAGCCCATAAAA.........................................................................................................................................................................................................................................................................2811.001010000
................................................................................................................................................................TGATCATTCACCCAACACTGACATCG..........................................................................................................................2621.002020000
......................................................................................................................................................................TTCACCCAACACTGACATCGCC........................................................................................................................2221.002200000
.....................................................................................................................AATCTGCACCCACAAGAGGAGT.........................................................................................................................................................................2211.001010000
................................................................................................................................................................TGATCATTCACCCAACACTGACATC...........................................................................................................................2521.002020000
.............................................................................................................................................................................................CATCACCAACAGCAGCAGCAGCATC..............................................................................................2531.003030000
...............................................................................................................................................................................................................................TGT-----------------------------------------------GATCTCCACATCCCCATCTG...............2321.002020000
......................................................................................................................................................................TTCACCCAACACTGACATCGCCGCAT....................................................................................................................2621.002110000
...............................................................................................................................................................................................TCACCAACAGCAGCAGCAGCATC..............................................................................................2331.003030000
...TATTTTAGCAATTCAAAGGATTCTT........................................................................................................................................................................................................................................................................................2511.001100000
.......................................................................................................................................................................TCACCCAACACTGACATCGCCGCATC...................................................................................................................2621.002200000
...............................................................................................................................................................TTGATCATTCACCCAACACTGACATCA..........................................................................................................................2721.002020000
..................................................................................................................................................................ATCATTCACCCAACACTGACA.............................................................................................................................2121.002020000
.......................................................................................................................................................................TCACCCAACACTGACATCGCCGCAT....................................................................................................................2521.002200000
...................................................................................................................................................................TCATTCACCCAACACTGACATCGCCGCA.....................................................................................................................2821.002020000
........................................................................................................................................................................................................................TGCCACATGT-----------------------------------------------GATCTCCACATCCCC....................2521.002020000
...............................................................................................................................................................................................TCACCAACAGCAGCAGCAGCATCTGTG..........................................................................................2721.002020000
...........................................TAAGTAGCGACAGATTGGAGTCCTT................................................................................................................................................................................................................................................2531.003020001
......................................TAAAATAAGTAGCGACAGATTGGA......................................................................................................................................................................................................................................................2431.003030000
..............................................................................................................................................................ATTGATCATTCACCCAACACTGACATCG..........................................................................................................................2821.002020000
...............................................................................................................................................................TTGATCATTCACCCAACACTGACAA............................................................................................................................2521.002020000
.......................................................................................................................................................................................TCGCCGCATCACCAACAGCAGCAG.....................................................................................................2430.672020000
......................................TAAAATAAGTAGCGACAGATTGG.......................................................................................................................................................................................................................................................2330.672020000
..............................................................................................................................................................................................ATCACCAACAGCAGCAGCAGCATCTG............................................................................................2630.672020000
.................................................................................................................................................................................CTGACATCGCCGCATCACCAACAG...........................................................................................................2430.672200000
...........................................................................................................................................................................................CGCATCACCAACAGCAGCAGCAGCATC..............................................................................................2730.672011000
...........................................TAAGTAGCGACAGATTGGAGTCC..................................................................................................................................................................................................................................................2330.672020000
.......................................................................................................................................................................................TCGCCGCATCACCAACAGCAGCAGCAG..................................................................................................2730.672011000
.........................................................TTGGAGTCCTTGGGCACAGCCCT....................................................................................................................................................................................................................................2330.672011000
................................................................................................................................................................................................CACCAACAGCAGCAGCAGCATCTG............................................................................................2450.603030000
..................................................................................................................................................................ATCATTCACCCAACACTGACATCGC.........................................................................................................................2520.501010000
.......................................................................................................................................................................TCACCCAACACTGACATCGCCGCATCACC................................................................................................................2920.501100000
........................................................................................................................................................................................................................TGCCACATGT-----------------------------------------------GATCTCCACATCCCCA...................2620.501010000
...................................................................................................................................................................TCATTCACCCAACACTGACATCGCCGC......................................................................................................................2720.501010000
...............................................................................................................................................................................................................CAGCATCTGTGCCACATGT-----------------------------------------------GATCTCC............................2620.501010000
..........................................................................................................................................................CTTCATTGATCATTCACCCAACAC..................................................................................................................................2420.501010000
.........................................................................................................................................................................................................................GCCACATGT-----------------------------------------------GATCTCCACATCCC.....................2320.501010000
....................................................................................................................................................................................................................TCTGTGCCACATGT-----------------------------------------------GATCTCCACATC.......................2620.501010000
...............................................................................................................................................................TTGATCATTCACCCAACA...................................................................................................................................1820.501010000
..................................................................................................................................................................................................................................................................................ATCTCCACATCCCCATCTGAG.............2120.501010000
..............................................................................................................................................................ATTGATCATTCACCCAACAC..................................................................................................................................2020.501010000
........................................................................................................................................................................................................................TGCCACATGT-----------------------------------------------GATCTCCACATCC......................2320.501010000
............................................................................................................................................................TCATTGATCATTCACCCAACACTGACAT............................................................................................................................2820.501010000
...................................................................TGGGCACAGCCCTTGGGCCAAACAT........................................................................................................................................................................................................................2520.501010000
..............................................................................................................................................................ATTGATCATTCACCCAACACTGAC..............................................................................................................................2420.501010000
...............................................................................................................................................................................................................................TGT-----------------------------------------------GATCTCCACATCCCCATCTGAG.............2520.501010000
.............................................................................................TTTGAAATAATGGTGTATGCTGCG...............................................................................................................................................................................................2420.501010000
........................................................................................................................................................................................................................TGCCACATGT-----------------------------------------------GATCTCCACA.........................2020.501010000
............................................................................................................................................................TCATTGATCATTCACCCAACACT.................................................................................................................................2320.501010000
...........................................................................................................................................................TTCATTGATCATTCACCCAACAC..................................................................................................................................2320.501010000
.....................................................................................................................................................................................................................CTGTGCCACATGT-----------------------------------------------GATCTCCACA.........................2320.501010000
...............................................................................................................................................................................................................................TGT-----------------------------------------------GATCTCCACATCCCCATCTGAGT............2620.501010000
.................................................................................................................................................................................................................................T-----------------------------------------------GATCTCCACATCCCCATCTGA..............2220.501010000
......................................................................................................................................................................................................................TGTGCCACATGT-----------------------------------------------GATCTCCACATC.......................2420.501010000
...............................................................................................TGAAATAATGGTGTATGCTGCGAATC...........................................................................................................................................................................................2620.501010000
....................................................................................................TAATGGTGTATGCTGCGAATCTGCACCC....................................................................................................................................................................................2820.501010000
...................................................................................................................................................GTCTTCACTTCATTGATCATTCACCC.......................................................................................................................................2620.501010000
.............................................................................................................................................................CATTGATCATTCACCCAACACTGACATC...........................................................................................................................2820.501010000
.................................................................................................................TGCGAATCTGCACCCACAAGAG.............................................................................................................................................................................2220.501010000
.....................................................................................................AATGGTGTATGCTGCGAATCTGCAC......................................................................................................................................................................................2520.501010000
..........................................................................................................................................................................CCCAACACTGACATCGCCGCATCACCA...............................................................................................................2720.501010000
....................................................................................................TAATGGTGTATGCTGCGAATCTGCACCCA...................................................................................................................................................................................2920.501010000
....................................................................................................TAATGGTGTATGCTGCGAATCTGCACC.....................................................................................................................................................................................2720.501010000
....................................................................................................TAATGGTGTATGCTGCGAATCTA.........................................................................................................................................................................................2320.501010000
........................................................................................................................................................................................................................TGCCACATGT-----------------------------------------------GATCTCCACATCCCCATC.................2820.501010000
....................................................................................................................................................................................................................TCTGTGCCACATGT-----------------------------------------------GATCTCCACATCC......................2720.501010000
....................................................................................................TAATGGTGTATGCTGCGAAA............................................................................................................................................................................................2020.501010000
.......................................................................................................................................................................TCACCCAACACTGACATCGCCGCA.....................................................................................................................2420.501010000
.....................................................................................................................................................................................................ACAGCAGCAGCAGCATCTGTGCC........................................................................................2320.501010000
............................................................................................TTTTGAAATAATGGTGTATGCTGC................................................................................................................................................................................................2420.501001000
....................................................................................................TAATGGTGTATGCTGCGAATCTGCACA.....................................................................................................................................................................................2720.501010000
............................................................................................TTTTGAAATAATGGTGTATGCTGCGAAT............................................................................................................................................................................................2820.501010000
........................................................................................................................................................................................................................TGCCACATGT-----------------------------------------------GATCTCCACATCCCCATCT................2920.501010000
......................................................................................................................................................................................................................TGTGCCACATGT-----------------------------------------------GATCTCCACATCCCCA...................2820.501010000
........................................................................................................................................................................................................................TGCCACATGT-----------------------------------------------GATCTCCACATCCC.....................2420.501010000
.........................................................................................................................................................................................................................GCCACATGT-----------------------------------------------GATCTCCACATCCCCATC.................2720.501010000
....................................................................................................................................................................CATTCACCCAACACTGACATCGCCGCA.....................................................................................................................2720.501010000
.......................................................................................................................................................................................................................GTGCCACATGT-----------------------------------------------GATCTCCACA.........................2120.501010000
...............................................................................................................................................................TTGATCATTCACCCAACACTGA...............................................................................................................................2220.501010000
...................................................................................................................................................................TCATTCACCCAACACTGACATCGCC........................................................................................................................2520.501010000
.................................................................................................................................................................................................................GCATCTGTGCCACATGT-----------------------------------------------GATCTCCA...........................2520.501010000
........................................................................................................................................................................CACCCAACACTGACATCGCCGCAT....................................................................................................................2420.501010000
.................................................................................................................................................................GATCATTCACCCAACACTGACATCGC.........................................................................................................................2620.501010000
...............................................................................................................................................................TTGATCATTCACCCAACACA.................................................................................................................................2020.501010000
...............................................................................................TGAAATAATGGTGTATGCTGCGAAT............................................................................................................................................................................................2520.501010000
.......................................................................................................................................................TCACTTCATTGATCATTCACCCAACAG..................................................................................................................................2720.501010000
.....................................................................................................AATGGTGTATGCTGCGAATCTGCA.......................................................................................................................................................................................2420.501010000
...............................................................................................................................................................................................TCACCAACAGCAGCAGCAGCATCTGTGCC........................................................................................2920.501010000
...............................................................................................................................................................................................................CAGCATCTGTGCCACATGT-----------------------------------------------GATCT..............................2420.501010000
.............................................................................................................................................................CATTGATCATTCACCCAACACTGACAA............................................................................................................................2720.501010000
.............................................................................................................................................................................................................................CATGT-----------------------------------------------GATCTCCACATCCCCATCTGAG.............2720.501010000
.......................................................................................................................................................................TCACCCAACACTGACATCG..........................................................................................................................1920.501010000
...................................................................................................ATAATGGTGTATGCTGCGAATCTGCACC.....................................................................................................................................................................................2820.501010000
.................................................................................................................................................................GATCATTCACCCAACACTGACATCGCCG.......................................................................................................................2820.501010000
....................................................................................................................................................................CATTCACCCAACACTGACATCGC.........................................................................................................................2320.501010000
................................................................................................................................................................................................................AGCATCTGTGCCACATGT-----------------------------------------------GATCTCCAC..........................2720.501010000
...............................................................................................................................................................TTGATCATTCACCCAACACT.................................................................................................................................2020.501010000
............................................................................................................................................................................................................................ACATGT-----------------------------------------------GATCTCCACATCCCCATC.................2420.501010000
................................................................................................................................................................TGATCATTCACCCAACACTGACATCGCC........................................................................................................................2820.501010000
.................................................................................................................................................................................................................................T-----------------------------------------------GATCTCCACATCCCCATCTGAGA............2420.501010000
...............................................................................................................................................................................................TCACCAACAGCAGCAGCAGCAT...............................................................................................2230.331010000
........................................................................................................................................................................................CGCCGCATCACCAACAGCAGCAGCAGT.................................................................................................2730.331010000
................................................AGCGACAGATTGGAGTCCTTGG..............................................................................................................................................................................................................................................2230.331001000
...................................................................................................................................................................................GACATCGCCGCATCACCAACAGCA.........................................................................................................2430.331010000
...........................................................................................................................................................................................CGCATCACCAACAGCAGCAGCAGCA................................................................................................2530.331010000
............................................................................................................................................................................................GCATCACCAACAGCAGCAGCAGCATC..............................................................................................2630.331010000
.........................................AATAAGTAGCGACAGATTGGA......................................................................................................................................................................................................................................................2130.331010000
...................................CCATAAAATAAGTAGCGACAGATTG........................................................................................................................................................................................................................................................2530.331000001
...........................................................................................................................................................................................CGCATCACCAACAGCAGCAGCAGC.................................................................................................2430.331010000
......................................TAAAATAAGTAGCGACAGATTGGAGTCGA.................................................................................................................................................................................................................................................2930.331010000
............................TGATAGCCCATAAAATAAGTAGCGAC..............................................................................................................................................................................................................................................................2630.331010000
............................................................................................................................................................................................GCATCACCAACAGCAGCAGCAGCATCTG............................................................................................2830.331010000
....................................................................................................................................................................................ACATCGCCGCATCACCAACAGCAGCA......................................................................................................2630.331010000
.......................................................................................................................................................................................TCGCCGCATCACCAACAGCAGCAGCAA..................................................................................................2730.331010000
...............................................................................................................................................................................................TCACCAACAGCAGCAGCAGCATCT.............................................................................................2430.331010000
..................................................................................................................................................................................TGACATCGCCGCATCACCAACAGCAG........................................................................................................2630.331010000
............................................................................................................................................................................CAACACTGACATCGCCGCATC...................................................................................................................2130.331010000
.........................................................TTGGAGTCCTTGGGCACAGCCCTT...................................................................................................................................................................................................................................2430.331001000
.......................................................GATTGGAGTCCTTGGGCACAGCCCTT...................................................................................................................................................................................................................................2630.331010000
..................................................................................................................................................................................TGACATCGCCGCATCACCAA..............................................................................................................2030.331010000
......................................TAAAATAAGTAGCGACAGATTGGAA.....................................................................................................................................................................................................................................................2530.331010000
..................................................................................................................................................................................TGACATCGCCGCATCACCAACAGC..........................................................................................................2430.331010000
.......................................AAAATAAGTAGCGACAGATTGGA......................................................................................................................................................................................................................................................2330.331010000
...........................................TAAGTAGCGACAGATTGGAGTCCTTGG..............................................................................................................................................................................................................................................2730.331010000
......................................TAAAATAAGTAGCGACAGATTGGAGT....................................................................................................................................................................................................................................................2630.331010000
...............................................TAGCGACAGATTGGAGTCC..................................................................................................................................................................................................................................................1930.331010000
..........................................ATAAGTAGCGACAGATTGGAG.....................................................................................................................................................................................................................................................2130.331000001
..................................................................................................................................................TGTCTTCACTTCATTGATCATT............................................................................................................................................2230.331010000
.......................................................................................................................................................................................TCGCCGCATCACCAACAGCAGCAGCAGT.................................................................................................2830.331010000
............................TGATAGCCCATAAAATAAGTAGCG................................................................................................................................................................................................................................................................2430.331010000
..........................................................................................................TGTATGCTGCGAATCTGCACCCACAA................................................................................................................................................................................2640.251010000
..........................................................................................................TGTATGCTGCGAATCTGCACC.....................................................................................................................................................................................2140.251010000
..........................................................................................................TGTATGCTGCGAATCTGCACT.....................................................................................................................................................................................2140.251100000
................................................................................................................................................................................................CACCAACAGCAGCAGCAGCAT...............................................................................................2180.131001000
..............................................................................................................................................................................................ATCACCAACAGCAGCAGCAG..................................................................................................2090.111010000
dp5
CGCTATTTTAGCAATTCAAAGGATTCTTTGATAGCCCATAAAATAAGTAGCAACAGATTGGAGTCCTTGGGCACAGCCCTTGGGCCAAACATTTTTGAAATAATGGTGTACGCTGCGAATCTGCACCCACAAGAGGAGCTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................AATCTGCACCCACAAGAGGAG..........................................................................................................................................................................2111.0010100000000
.......................................................................................................TGGTGTACGCTGCGAATCTGCACCCACA.................................................................................................................................................................................2811.0010100000000
................................................AGCAACAGATTGGAGTCCTTG...............................................................................................................................................................................................................................................2111.0010100000000
............................................................................................................TACGCTGCGAATCTGCACCCACAAG...............................................................................................................................................................................2511.0010100000000
...........................................TAAGTAGCAACAGATTGGAGTCC..................................................................................................................................................................................................................................................2311.0010100000000
.........................................................TTGGAGTCCTTGGGCACAGCCCT....................................................................................................................................................................................................................................2311.0010100000000
droEle1
G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGTCGCCGCATCAGCAACAGCAGCAGCAACAGCATCACCAGCAAC-----------------------------------------------AGTTGCAGCAGCCACAGC--AGCAG----------SizeHit CountTotal NormTotal
No Reads
dm3
CAGCA--------------------------------------------GCAACAG-------------------------------------------------------------------------------------------------------------------------------CAGCAGCACGACCAACAGCAGCAACAGCAT-------------CAGTCAACCGCAACATCGGCGTCCAGTTCGTGCTCCTCGTCGCGGGACACGCCCACATCCTCGCACGAGGAGGCGGACCATGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................................................................T-------------CAGTCAACCGCAACATCGGCGTCCAG........................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TCGCACGAGGAGGCGGAC....1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................CAACAGCAGCAACAGCAT-------------CAG...............................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................CAGCACGACCAACAGCAGC.......................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.......................................................................................................................................................................................................................................................TCCAGTTCGTGCTCCTCGTCGC.......................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................TCCAGTTCGTGCTCCTCGTCGCGG.....................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...CA--------------------------------------------GCAACAG-------------------------------------------------------------------------------------------------------------------------------CAGCAGCAC....................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CAACA--------------------------------------------ACAGCAG-------------------------------------------------------------------------------------------------------------------------------CAGCAGCACGACCAACAGCAGCAGCAGCAGCAC----------CAGTCAACCGCAACATCGGCGTCCAGTTCGTGCTCCTCGTCGCGGGACACGCCCACATCCTCACAGGAGGAGGTGGACCATGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................AGCAGCAGCAGCAC----------CAGTC.............................................................................1931.00300003000000000000

Generated: 06/08/2015 at 03:45 PM