ID:

dpe_105

 Coordinate:

scaffold_10:643338-643395 +

 Confidence:

Known Ortholog

 Class:

Mirtron

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.0 -16.2 -16.2

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CTGCCACAGCGACAGAAGCAGAAGTTTATAAAACCAGAAACAAATTTTGTGTAAATGTGATAATTGTTTGTAAGTTTGCCCTTATAATCAATCTTATTACGTTTATAGTATAATGAGCTGGTCTAGCTCATCGTCGCCTGCCGGTGCCTCTGATTCTC

**************************************************((((((((((((((((.(((((((......))))))).))))..))))))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042

female body

 V050

head

 V057

head

 V111

male body		 V042

embryo

 M021

embryo
....................................................................................TAATCAATCTTATTACGTTTATAG.................................................. 24 0 1 62.00 62 23 17 8 6 8 0
....................................................................................TAATCAATCTTATTACGTTTAT.................................................... 22 0 1 31.00 31 9 10 10 1 1 0
....................................................................................TAATCAATCTTATTACGTTTATAGT................................................. 25 0 1 19.00 19 5 5 6 0 0 3
....................................................................................TAATCAATCTTATTACGTTTATA................................................... 23 0 1 16.00 16 7 4 4 0 1 0
..................................................GTAAATGTGATAATTGTTTGT....................................................................................... 21 0 1 12.00 12 0 5 1 6 0 0
.....................................................................................AATCAATCTTATTACGTTTATAG.................................................. 23 0 1 6.00 6 5 1 0 0 0 0
....................................................................................TAATCAATCTTATTACGTTTATAT.................................................. 24 1 1 4.00 4 1 0 3 0 0 0
....................................................................................TAATCAATCTTATTACGTTTA..................................................... 21 0 1 3.00 3 1 0 2 0 0 0
....................................................................................TAATCAATCTTATTACGTTTATAGA................................................. 25 1 1 3.00 3 2 1 0 0 0 0
..................................................GTAAATGTGATAATTGTTTGTA...................................................................................... 22 0 1 3.00 3 1 1 1 0 0 0
....................................................................................TAATCAATCTTATTACGTTT...................................................... 20 0 1 2.00 2 0 1 0 0 1 0
....................................................................................TAATCAATGTTATTACGTTTAT.................................................... 22 1 1 2.00 2 2 0 0 0 0 0
....................................................................................TAATCAATCTTATTACGTTTGTAG.................................................. 24 1 1 1.00 1 0 0 0 1 0 0
....................................................................................TAATACATCTTATTACGTTTAT.................................................... 22 2 1 1.00 1 0 1 0 0 0 0
....................................................................................TACTCGATTTTATTACGTTTATAGT................................................. 25 3 1 1.00 1 0 0 1 0 0 0
....................................................................................TAATCAATCTTATTCCGTTTAT.................................................... 22 1 1 1.00 1 0 0 1 0 0 0
..................................................GTAAATGTCATAATTGTTTGTAAGTT.................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................AATCCATCTTATTACGTTTATAG.................................................. 23 1 1 1.00 1 0 1 0 0 0 0
....................................................................................TAATCAATGTTATTACGTTTATAA.................................................. 24 2 1 1.00 1 1 0 0 0 0 0
....................................................................................TAATCAATCTTATTACGATTAT.................................................... 22 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................................................CTAGCTCATCGTCGCCTGCCGGTGCC.......... 26 0 1 1.00 1 0 0 0 0 0 1
....................................................................................TAATCAGTCTTATTACGTTTATA................................................... 23 1 1 1.00 1 0 0 1 0 0 0
....................................................................................TAATCAATCTTATTACTTTT...................................................... 20 1 1 1.00 1 0 0 1 0 0 0
....................................................................................TAATAAATCTTATTACGTTT...................................................... 20 1 1 1.00 1 0 0 1 0 0 0
..................................................GTAAATGTGATAATTGTTTGTAAGT................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
....................................................................................TAATCAATCTTATTACGTTTATCGT................................................. 25 1 1 1.00 1 0 0 0 0 0 1
....................................................................................TAATCGATCTTATTCCGTTTAT.................................................... 22 2 1 1.00 1 0 0 1 0 0 0
....................................................................................TAATCAATCTTATTACGTTCATAGT................................................. 25 1 1 1.00 1 0 0 0 0 0 1
....................................................................................TAATCAATCTTATTACGTTTATAA.................................................. 24 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................AATCAATCTTATTACGTTTATAGT................................................. 24 0 1 1.00 1 0 0 1 0 0 0
.................................................................................................TACGTTTATAGTATAATGAGC........................................ 21 0 1 1.00 1 0 0 0 0 1 0
....................................................................................TAATCAATATTATTACGTTTATAG.................................................. 24 1 1 1.00 1 1 0 0 0 0 0
....................................................................................TAATCAATATTATTACGTCTAT.................................................... 22 2 1 1.00 1 0 1 0 0 0 0
......................................................................................ATCAATCTTATTACGTTTAT.................................................... 20 0 1 1.00 1 1 0 0 0 0 0
..................................................GTAAATGTGATAATTGTGTGT....................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0
........................................................................................CAATCTTATTACGTTTATAGT................................................. 21 0 1 1.00 1 1 0 0 0 0 0
....................................................................................TAATCAATCTTATTACGTTTATAGTAA............................................... 27 1 1 1.00 1 1 0 0 0 0 0
....................................................................................TCATCCATCTTATTACGTTTATAG.................................................. 24 2 1 1.00 1 0 1 0 0 0 0
....................................................................................TAATCAAGCTTACTACGTTTATAC.................................................. 24 3 2 0.50 1 0 0 1 0 0 0
....................................................................GGTAATTTTACCCTTATAATC..................................................................... 21 3 5 0.20 1 1 0 0 0 0 0

Anti-sense strand reads

GACGGTGTCGCTGTCTTCGTCTTCAAATATTTTGGTCTTTGTTTAAAACACATTTACACTATTAACAAACATTCAAACGGGAATATTAGTTAGAATAATGCAAATATCATATTACTCGACCAGATCGAGTAGCAGCGGACGGCCACGGAGACTAAGAG

**************************************************((((((((((((((((.(((((((......))))))).))))..))))))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droPer2 scaffold_10:643288-643446 + dpe_105 confident CTGCCACAGCGACAGAAGCAGAAGTTTATAAAACCAGAAACAAATTTTGTGTAAATGTGATAATTGTTTGTAAGTTTGCCCTTATAATCAATCTTATTACGTTTATAGTATAATGAGCTGGTCTAGCTCATCGTCGCCTGCCGGTGCCTCTGATTCTCA
dp5 4_group4:1639545-1639703 + dps-mir-2564 Known_mirbase CTGCCAGAGCGACAGAAGCAGAAGTTTATAAAACCAGAAACAAATTTTGTGTAAATGTGATAATTGTTTGTAAGTTTGCCCTTATAATCAATCTTATTACGTTTATAGTATAATGAGCTGGTCTAGCTCATCGTCGCCTGCCGTTGCCTCTGATTCTCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
CTGCCACAGCGACAGAAGCAGAAGTTTATAAAACCAGAAACAAATTTTGTGTAAATGTGATAATTGTTTGTAAGTTTGCCCTTATAATCAATCTTATTACGTTTATAGTATAATGAGCTGGTCTAGCTCATCGTCGCCTGCCGGTGCCTCTGATTCTCASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
....................................................................................TAATCAATCTTATTACGTTTATAG...................................................24162.006202381786
....................................................................................TAATCAATCTTATTACGTTTAT.....................................................22131.003109110101
....................................................................................TAATCAATCTTATTACGTTTATAGT..................................................25119.0019350560
....................................................................................TAATCAATCTTATTACGTTTATA....................................................23116.0016071440
..................................................GTAAATGTGATAATTGTTTGT........................................................................................21112.0012000516
.....................................................................................AATCAATCTTATTACGTTTATAG...................................................2316.006050100
....................................................................................TAATCAATCTTATTACGTTTATAT...................................................2414.004010030
....................................................................................TAATCAATCTTATTACGTTTA......................................................2113.003010020
....................................................................................TAATCAATCTTATTACGTTTATAGA..................................................2513.003020100
..................................................GTAAATGTGATAATTGTTTGTA.......................................................................................2213.003010110
....................................................................................TAATCAATCTTATTACGTTT.......................................................2012.002001100
..........................................................................................................................CTAGCTCATCGTCGCCTGCCGGTGCC...........2611.001100000
..................................................GTAAATGTGATAATTGTTTGTAAGT....................................................................................2511.001010000
....................................................................................TAATCAATCTTATTACGTTTATAA...................................................2411.001010000
.....................................................................................AATCAATCTTATTACGTTTATAGT..................................................2411.001000010
.................................................................................................TACGTTTATAGTATAATGAGC.........................................2111.001001000
......................................................................................ATCAATCTTATTACGTTTAT.....................................................2011.001010000
........................................................................................CAATCTTATTACGTTTATAGT..................................................2111.001010000
....................................................................................TAATCAATCTTATTACGTTTATAGTAA................................................2711.001010000
dp5
CTGCCAGAGCGACAGAAGCAGAAGTTTATAAAACCAGAAACAAATTTTGTGTAAATGTGATAATTGTTTGTAAGTTTGCCCTTATAATCAATCTTATTACGTTTATAGTATAATGAGCTGGTCTAGCTCATCGTCGCCTGCCGTTGCCTCTGATTCTCASizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
....................................................................................TAATCAATCTTATTACGTTTATAG...................................................241245.0024509548104410811811
....................................................................................TAATCAATCTTATTACGTTTATAGT..................................................251119.00119033489553655
....................................................................................TAATCAATCTTATTACGTTTAT.....................................................22136.003602032351020
....................................................................................TAATCAATCTTATTACGTTTATA....................................................23124.002401202333001
....................................................................................TAATCAATCTTATTACGTTTATAGC..................................................25116.001600132100000
.....................................................................................AATCAATCTTATTACGTTTATAG...................................................23113.001301020100000
....................................................................................TAATCAATCTTATTACGTTTATAGA..................................................25112.00120141200400
..................................................GTAAATGTGATAATTGTTTGTA.......................................................................................2218.0080220130000
..................................................GTAAATGTGATAATTGTTTGT........................................................................................2118.0080301031000
....................................................................................TAATCAATCTTATTACGTTTA......................................................2114.0040200011000
....................................................................................TAATCAATCTTATTACGTTT.......................................................2014.0040400000000
....................................................................................TAATCAATCTTATTACGTTTATAT...................................................2414.0040011200000
..................................................GTAAATGTGATAATTGTTTGTAAGTTTG.................................................................................2813.0030300000000
....................................................................................TAATCAATCTTATTACGTTTATAGTT.................................................2612.0020100100000
.....................................................................................AATCAATCTTATTACGTTTATAGA..................................................2412.0020100000001
........................................................................................CAATCTTATTACGTTTATAGT..................................................2112.0020002000000
....................................................................................TAATCAATCTTATTACGTTTAC.....................................................2212.0020020000000
...................................................TAAATGTGATAATTGTTTGTA.......................................................................................2112.0020100000001
.....................................................................................AATCAATCTTATTACGTTTAT.....................................................2112.0020200000000
..................................................GTAAATGTGATAATTGTTTGC........................................................................................2111.0010010000000
..................................................GTAAATGTGATAATTGTTTGTAA......................................................................................2311.0010000100000
..................................................GTAAATGTGATAATTGTTTGTAAG.....................................................................................2411.0010100000000
.....................................................................................AATCAATCTTATTACGTTTATAGT..................................................2411.0010100000000
....................................................................................TAATCAATCTTATTACGTTTATG....................................................2311.0010010000000
...................................................................................ATAATCAATCTTATTACGTTTAT.....................................................2311.0010000100000
........................................................................................CAATCTTATTACGTTTATAGA..................................................2111.0010000100000
....................................................................................TAATCAATCTTATTACGTTTATAGTAA................................................2711.0010100000000
......................................................................................ATCAATCTTATTACGTTTATAGC..................................................2311.0010010000000
....................................................................................TAATCAATCTTATTACGTTG.......................................................2011.0010000010000
....................................................................................TAATCAATCTTATTACGTTTATT....................................................2311.0010100000000
....................................................................................TAATCAATCTTATTACGTTTATAGTA.................................................2611.0010010000000
....................................................................................TAATCAATCTTATTACGTTTATAGG..................................................2511.0010001000000
...................................................................................ATAATCAATCTTATTACGTTTATAGT..................................................2611.0010100000000
.......................................................................................TCAATCTTATTACGTTTATAG...................................................2111.0010100000000
...................................................TAAATGTGATAATTGTTTGTAA......................................................................................2211.0010100000000
..................................................GTAAATGTGATAATTGTTTGTAAGTT...................................................................................2611.0010100000000
.........................................................................................AATCTTATTACGTTTATA....................................................1811.0010000000010
.....................................................................................AATCAATCTTATTACGTTTATA....................................................2211.0010100000000
....................................................................................TAATCAATCTTATTACGTTTATAA...................................................2411.0010100000000

Generated: 10/20/2015 at 07:04 PM