dpe_1034

exon [dper_GLEANR_11361:2]; exon [dper_GLEANR_11361:3]; CDS [Dper\GL11218-cds]; CDS [Dper\GL11218-cds]; intron [Dper\GL11218-in]

Name	Class	Family	Strand
MINIME_DN	Unknown	Unknown	+
DNAREP1_DYak	RC	Helitron	+

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GCTGGTGCAGGGCGTACAGGGGGCCCAGCTGCTCATCCCAACGGCGCAAGGTAAGGACTTTTGTCTGGGATTAGTTATAGTTGTCAGTCAGTCAGTCAGTCCGTCTGTCTGTCCGCCTGTCGGTCTATCCATCGGTGTGGCTATCAATATCATAGTTGACTTGATTTGACTCTTGGCGGGACACCAAAGCTTGTAAAGCGATTAGGGAAACTTTCAATTTCCTCTCGTTTGGGCTCCGACATAAGCCGGGAAACATTTACATTGCAAAATATCTAATACATTATCCCCATCCACAGGCATCGCCGTGCAGACAATTCTCACGATTCCCGTGAGTCCGCAGATACCC ************************************************....((((....))))(((((..((..(((.(((..(((((.(((.(((.....))).))).(((((((..((.....))..))).))))..(((((..(((....))).))))))))))(((((((..........(((((...((((((..((((((........)))))).))))))))))).........))))))).................))).)))..))...))))).........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V042 embryo	V057 head	M042 female body
.................................................................................TCTCAGTCAGTCAGTCAGATCGTC.................................................................................................................................................................................................................................................	24	3	10	0.10	1	1	0	0
..............................................CAAGGGGAGGACTTTTGAC.........................................................................................................................................................................................................................................................................................	19	3	19	0.05	1	0	1	0
.........................................................................................................................GATCTATCCATGGGTGGGG..............................................................................................................................................................................................................	19	3	20	0.05	1	0	0	1

CGACCACGTCCCGCATGTCCCCCGGGTCGACGAGTAGGGTTGCCGCGTTCCATTCCTGAAAACAGACCCTAATCAATATCAACAGTCAGTCAGTCAGTCAGGCAGACAGACAGGCGGACAGCCAGATAGGTAGCCACACCGATAGTTATAGTATCAACTGAACTAAACTGAGAACCGCCCTGTGGTTTCGAACATTTCGCTAATCCCTTTGAAAGTTAAAGGAGAGCAAACCCGAGGCTGTATTCGGCCCTTTGTAAATGTAACGTTTTATAGATTATGTAATAGGGGTAGGTGTCCGTAGCGGCACGTCTGTTAAGAGTGCTAAGGGCACTCAGGCGTCTATGGG ************************************************....((((....))))(((((..((..(((.(((..(((((.(((.(((.....))).))).(((((((..((.....))..))).))))..(((((..(((....))).))))))))))(((((((..........(((((...((((((..((((((........)))))).))))))))))).........))))))).................))).)))..))...))))).........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M021 embryo	V042 embryo	V057 head
.................................................................................ACAGTCAGTCAGTGAGGCAGGCAG.................................................................................................................................................................................................................................................	24	2	2	1.00	2	2	0	0
...................................................................................................................................................................................................................................................................................TAGGTATTAGGGGTAGGT.....................................................	18	2	13	0.08	1	0	1	0
....................................................................................................................GACTGCTAGATAGGTCGCC...................................................................................................................................................................................................................	19	3	19	0.05	1	0	0	1

Species	Coordinate	ID	Alignment
droPer2	scaffold_2:2427593-2427938 +	dpe_1034	GCTGGTGCAGGGCGTACAGGGGGCCCAGCTGCTCATCCCAACGGCGCAAGGTAAGGACT------------------------------------------------------------------------TT-TGTCTGGGATTA-GTTATAGT------------------------------------------------------TGTCAGTCAGTCAGTCAGTCCGTCTGTCTGTCCGCCTGTCGGTCTA-------------------------------TCCA--------TC-------------------------GGTG-----T-------GGCTATCAATATCATAGTTGACTTGATTTGACTCT-TG-----------------G-------------------------------------------------------------------------CGGGACA--------CCAAAGCTTG---TAAAGCGATTAGGGAAACTTTCAATTTCCTCTC-----------------------GTTTGG------------------------------------------G--------------------------------------CTCCGACATAAG-----CCGGGAAACATTTACATTGCAAAATATCTAATACATTATCCCCATCCAC--------------------AGGCATCGCCGTGCAGACAATTCTCACGATTCCCGTGAGTCCGCA-GATACCC
dp5	3:2255023-2255368 +		GCTGGTGCAGGGCGTACAGGGGGCCCAGCTGCTCATCCCAACGGCGCAAGGTAAGGACT------------------------------------------------------------------------TT-TGTCTGGGATTT-GTTATAGT------------------------------------------------------TGTCAGTCAGTCAGTCAGTCCGTCTGTCTGTCCGCCTGTCGTTCTA-------------------------------TCCA--------TC-------------------------GGTG-----T-------GGCTATCAATATCATAGTTGACTTGATTTGACTCT-TG-----------------G-------------------------------------------------------------------------CGGGACA--------CCAAAGCTTG---TAAAGCGATTAGGGAAACTTTCAATTTCCTCTC-----------------------GTTTGG------------------------------------------G--------------------------------------CTCCGACATAAG-----CCGGGAAACATTTACATTGCACAATATCTAATACATTATCCCCATCCAC--------------------AGGCATCGCCGTGCAGACCATTCTCACGATTCCCGTGAGTCCGCA-GATACCC
droWil2	scf2_1100000004514:710343-710801 +		ACTGGTTCAGGGTGTACAAGGTGCCCAGCTGCTCATACCCACAGCCCAAGGTAAGGC--------------------------------------------------------------------------------CAGGGATTA-ACTTTAGT------------------------------------------------------TGTG---------------------------------------------------------------------------------------CATGCATATATAGAGTTAGAGGGCG--GACTGGATGGATGGGGTATATCAATAACATAGTTGACTTGACTTGACTTT-GA-----------------GCAGCAAAAAGAATCCTAGTGAAATTTTCC-G-GGACGT------AT------CG-------------------CGG-GTA--------TTAAAGC------TAAAGCGATTAGGTAAACTTTCAATTTCCTCTTCCTCCATTTCTTTGGCCATTCTCGCGTTGACGGTTTGGGAAATGGGCTGGAATAGAAAATCACCAAAATAAGGAAAACTAAAAATGTTCAATCATGCTTGTTGAAAAAGGGTTTTACATAAGGATGCCCAGTAAA-------------------------------CTCCATTGACTTTTGTATTTCATTTCTTTTAGGCATTGCCGTTCAGACCATTTTGACGATTCCTGTGAGTCCGCA-GATACCG
droVir3	scaffold_12928:1067478-1067771 +		GCAGCCGTATGAGAATCAGGAGGTATTGCTGTCGGCGCCAA------ATGATGAGCGTGC-ACAGTATCTGCAGACAAGTCACCTGTCCGAGCAGCCCGAGGAGCTTAACG-----------------AGTCC-AACTGGGAGACAGATGGACTGTTCCCGCCGCCGGGACTGTCACGTCTGGTGCTCGGCCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGGAGCTGG---TAGAGCAACAA---------------------C-----------------------GTCTGG------------------------------------------T--------------------CACCGGCACCGAACA------------------------------GCCGCCCAGTCGTGTGGCCAATGCGCTGCACATGGCG----------------------------GAGCGTCAGGCCGATGGTGAGGACACCTCCGAGG--GTG-AGCAGCC
droMoj3	scaffold_6473:2324965-2325172 +		GTCAGTCGG--TCAGTCAG----------------------------------------T-C------------------------------------------AGTCAGT-----------------CAGTC-AG------------------TC------------------------------------AGTCAGT---------------------------------------------CAGTCAGTCAGTCAGTCATTGAATGGGCTTCTTGTT---GTTGTT-----------TATGCATTTGTAGCGCCAGCAAACG--CAACAGTA-----------GCCA-----GTCGCAGCCTCCAGCTGCCTCT-TGTCCTGGCCTCGTCCTAGCCA--------CGA-CAC-----------G-T-ACTT---------------------------------------------------------------------------------------CATTCTCTCTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA--------------------------------TGATGCAAAAGATTACCA
droGri2	scaffold_15245:2620689-2620911 +		GCTGGTGCAGGGCGTCCAGGGTGCCCAGCTACTCATACCCACAGCGCAAGGTGGGTGCAA-A------------------------------------------ACAAATAACTACACATGCATGTTGTGTGC-TGTGTGGGATTA-GTTTTAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCC-----T-------GGGTATCAATAACATAGTTGACTTCACTTGACTCT-GG------------------CC--------CGG-GCC-----------G-C----AGCC--AAAGT------CG-------------------TTGGTTA--------TTAAAGCCAATGCTAAAGCGATTAGTGT-GCTCTCAATTTCCTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_13266:1720046-1720257 -		GCTGGTGCAGGGCGTTCAGGGCGCCCAGCTGCTCATACCCACGGCCCAAGGTGAGTGGG----------------------------------------------------------------------GTGC-GGTTGGGGGTTTGATTTTAGTT------------------------------------TCCCGGG---------------------------------------------------------------------------------------------------AC-------------------------TGTA-----T-------GGGTATCAATAACATAGTTGACTTGGTTTGACTTTTTG-----------------GCG--------GAT-TTC-----------G-T-GGACGGA--GGAGT------CG-------------------CGGGGCC--------TTAAAGCTTA---TAAAGCGATTAGGTAAACTTTCAATTTCCTCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000396730:2713896-2714106 -		GCTGGTGCAGGGCGTTCAGGGTGCCCAGCTGCTCATACCCACGGCCCAAGGTGAGTGGGT-G----------------------------------------------------------------------C-GGTTGGGGGTTTGATTTTAGTT------------------------------------TCCCGGG---------------------------------------------------------------------------------------------------TC-------------------------TGTA-----T-------GGGTATCAATAACATAGTTGACTTGGTTTGACTTTTTG-----------------GCG--------GAT-TTC-----------G-T-GGACGAA--GGAGT------CG-------------------CGGGGCC--------TTAAAGCTTA---TAAAGCGATTAGGTAAACTTTCAATTTCCTCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000302277:127720-127906 +		GCTGGTGCAGGGCGTCCAGGGGGCCCAGCTGCTCATACCCACGGCCCAAGGTGAGTG---------------------------------------------------ATG-----------------GATAT-AG------------------T------------------------------------------------------TG-----------------------------------------------------------------------------------------------------------------------------------GGGTATCAATAACATAGTTGACTTGGCTTGACTTT-TA-----------------GCG--------AGT-CCT-----------GACAGACTAGC--GGAGT------CG-------------------CGGGGCA--------TTAGAGCCCA---TAAAGCGATTAGGGTAACTTCCAATTTCCTCTC-----------------------TTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000453851:2058196-2058401 -		ACTGGTGCAGGGGGTGCAGGGCGCCCAGCTGCTCATCCCCACGGCCCAAGGTGAGTGTGC-C------------------------------------------CCACGAG-----------------GGTTCAAG------------------TT------------------------------------GCATGGT------TAGTTG--------------------------------------------------------------------------------------------------------------------GA-----G-------GAGTATCGATAGCACAGTTGACTTGGCTTGACTTC-CA-----------------GCG--------CGTCCTT-----------G-T-GGTCGGT--GAAGT------AG-------------------CGGGGCA--------TGAAAGCCCA---TAAAGCGATTAGGCAAACTTTCAATTTCCTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000491240:1104148-1104398 +		GCTGGTGCAGGGCGTCCAGGGTGCCCAGCTACTCATACCCACGGCCCAAGGTGAGTGGG-----------------------------------------------------------------------TTT-AG------------------TT------------------------------------TTACGGG------TTGT-----------------------------------------------------------------CGTCTGGGTT------C--------T-------------------------CGTC-----T-------GGGTATCAATAACATAGTTGACTTGGTTTGACTTT-CG-----------------GCG--------CAT-CTC-----------G-T-GGTTGGC--GGGGT------CG-------------------CGGGGCATTA------TAAAGCTCA---TAAAGCGATTAGGGAAACTTTCAATTTCCTCCC---------------------TTTAGTGA------------------------------------------GGAGGG------------------------GAAAAAAGGATTTAACGTAAT-----CCTGGAAA------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000758106:1682-1898 +		GCTGGTGCAGGGCGTCCAGGGCGCCCAGCTGCTCATCCCCACGGCCCAAGGTGAGTGTGT-----------------------------------------------------------------------TT-AGTTTGGCGTTGGGTCTTCGT---------------------------------------------------------C------------------------------------------------------CTG--------CT---CCCTCCAC-------TG-------------------------CGTC-----T-------GGGTATCAATAGCATAGTTGACTTGGCTTGACTTC-CA-----------------GCG--------CAT-CTC-----------G-T-GGTTGGC--GGAGT------CA-------------------CGGG-CATTG------TAAAGCTCA---TAAAGCGATTAGGGAAACTTTCAATTTCCTCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000302291:2146023-2146249 +		GCTGGTGCAGGGCGTCCAGGGAGCCCAGCTGCTCATACCCACGGCCCAAGGTGAGTGTG---------------------------------------------CTCCGAG-----------------GGTCT-AG------------------TT------------------------------------CCGTGGG------TAGTTGTC------------------------------------------------------CTTTGTCCGTCTG----------C-------AG-------------------------TGTC-----C-------TGGTATCAATAACATAGTTGACTTGGTTTGACTTT-----------------------------------CTC-----------G-T-GGCTGCC--GGAGTGCCGGGCA-------------------CGGGGCA-TGGGGCACGAAAGCTCG---TAAAGCGATTAGGGAAACTTTCAATTTCCACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000415627:156440-156656 +		ACTGGTACAGGGCGTCCAGGGCGCCCAGCTGCTCATACCCACGGCCCAAGGTGAGTGGAAAG------------------------------------------CTCCAGG-----------------GGTCT-AG------------------TT------------------------------------CTACGGG------TGGTTGTC------------------------------------------------------CTTTGTCCGTCCG----------G-------AT-------------------------TGTC-----T-------GGGTATCAATAACATAGTTGACTTGGTTTGACTTT-----------------------------------CCC-----------G-T-GGTTGCC--GGAGT------CG-------------------CGGGGCA--------CAAAAGCTCA---TAAAGCGATTAGGAAAACTTTCAATTTCCTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000407691:142449-142663 +		ACTGGTGCAGGGTGTCCAGGGAGCCCAGCTGCTTATACCCACGGCCCAAGGTGAGTGTGT-G------------------------------------------TTATAGG------------------------G------------------TT------------------------------------ATACG----------GTTGTC------------------------------------------------------CCTTGTCCGTCTG----------TTCGTCTGTT-------------------------CGTCC----T-------GGGTATCAATAACATAGTTGACTTGGTTTGACTTT-CA-----------------AAG--------CAT-CTC-----------G-T-GGATGGCTGGGGGT------CA-------------------T-----------------GAGCTCA---TAAAGCGATTAGAGAAACTTTCAATTTCCTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3	chr2R:4276962-4277209 +		GCTGGTGCAGGGCGTCCAGGGTGCCCAGCTGCTCATACCCACGGCCCAAGGTGAGTGTGT-G------------------------------------------CTTCACG-----------------GGCTC-AG------------------TT------------------------------------CCCTGGTTTGTAGTAGTTGT-AG--------------------------------------------TAGTAGTGCCTTGTCTGTCTG----------C--------T-------------------------CGTC-----T-------GGGTATCAATAGCATAGTTGACTTGGCTTGACTTT-CA-----------------GCG--------CAG-CTC-----------G-T-GGTTGGT--GGAGT------CA-------------------CGGGGCA-TA------AAAAGCTCG---TAAAGCGATTAGGGCAACTTTCAATTTCCTCC----------------------TCGCGTGG------------------------------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2	2r:5095454-5095700 +	dsi_28768	GCTGGTGCAGGGCGTCCAGGGCGCCCAGCTGCTCATACCCACAGCCCAAGGTGAGTGTGT-G------------------------------------------CTTCACG-----------------GGCTC-AG------------------TT------------------------------------CTCCGGGTTGTAGTAGTTGTG----------------------------------------------CCGTTGTGTTGTGTCCGTCTG----------C--------T-------------------------CGTC-----T-------GGGTATCAATAGCATAGTTGACTTGGCTTGACTTT-CA-----------------GCG--------CAG-CTC-----------G-T-GTTTGGT--TGAGT------CA-------------------CGGGGCA-TA------AAAAGCTCG---TAAAGCGATTAGGGCAACTTTCAATTTCCTCC----------------------TCGCGTGG------------------------------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_1:1922802-1923040 +		GCTGGTGCAGGGCGTCCAGGGCGCCCAGCTGCTCATACCCACAGCCCAAGGTGAGTGTGT-G------------------------------------------CTTCACG-----------------GGCTC-AG------------------TT------------------------------------CTCCGGGTTGTAGTAGTTGTG------------------------------------------------------CCTTGTCCGTCTG----------C--------T-------------------------CGTC-----T-------GGGTATCAATAGCATAGTTGACTTGGCTTGACTTT-CA-----------------GCG--------CAG-CTC-----------G-T-GGTTGGT--GGAGT------CA-------------------CGGGGCA-TA------AAAAGCTCG---TAAAGCGATTAGGGCAACTTTCAATTTCCTCC----------------------TCGCGTGG------------------------------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	2L:16933448-16933711 +		GCTGGTGCAGGGCGTCCAGGGCGCCCAGCTGCTCATACCCACGGCCCAAGGTGAGTGTGT-GTATGA-------------------------------------CTTTACG-----------------GGCTC-AG------------------TT------------------------------------CTCCGGG------TAGTTGGG------------------------------------------------------CCTTGTCCGTCTG----------CCCGTCTGCT-------------------------CGTC-----T-------GGGTATCAATCGCAAAGTTGACTTGGCTTGACTT--CA-----------------GCG--------CAG-CTC-----------G-T-GGTTGGC--GGAGT------CATAGTCATACCACCATGAGATGGGGCA-TA------AAAAGCTCG---TAAAGCGATTAGGGCAACTTTCAATTTCCTCC----------------------TCGCGTGG------------------------------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4929:18355727-18355958 -		GCTGGTGCAGGGCGTCCAGGGCGCCCAGCTGCTCATACCGACGGCCCAAGGTGAGTGTGT-G------------------------------------------CTGCACG-----------------GGCCA-AG------------------TT------------------------------------CC-CGGG------TAATTGTG------------------------------------------------------CCGTGTCCGTCTG----------C--------T-------------------------CGTC-----T-------GGGTATCAATAGCCAAGTTGACTTGGCTTGACTTC-CA-----------------GCG--------CAG-CTC-----------G-T-GGTTGCT--GGAGT------CA-------------------CGGGGCA-TA------AAAAGCTCG---TAAAGCGATTAGGGCAACTTTCAATTTCCTCC----------------------TCGCGTGG------------------------------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

GCTGGTGCAGGGCGTACAGGGGGCCCAGCTGCTCATCCCAACGGCGCAAGGTAAGGACT------------------------------------------------------------------------TT-TGTCTGGGATTA-GTTATAGT------------------------------------------------------TGTCAGTCAGTCAGTCAGTCCGTCTGTCTGTCCGCCTGTCGGTCTA-------------------------------TCCA--------TC-------------------------GGTG-----T-------GGCTATCAATATCATAGTTGACTTGATTTGACTCT-TG-----------------G-------------------------------------------------------------------------CGGGACA--------CCAAAGCTTG---TAAAGCGATTAGGGAAACTTTCAATTTCCTCTC-----------------------GTTTGG------------------------------------------G--------------------------------------CTCCGACATAAG-----CCGGGAAACATTTACATTGCAAAATATCTAATACATTATCCCCATCCAC--------------------AGGCATCGCCGTGCAGACAATTCTCACGATTCCCGTGAGTCCGCA-GATACCC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

dp5

GCTGGTGCAGGGCGTACAGGGGGCCCAGCTGCTCATCCCAACGGCGCAAGGTAAGGACT------------------------------------------------------------------------TT-TGTCTGGGATTT-GTTATAGT------------------------------------------------------TGTCAGTCAGTCAGTCAGTCCGTCTGTCTGTCCGCCTGTCGTTCTA-------------------------------TCCA--------TC-------------------------GGTG-----T-------GGCTATCAATATCATAGTTGACTTGATTTGACTCT-TG-----------------G-------------------------------------------------------------------------CGGGACA--------CCAAAGCTTG---TAAAGCGATTAGGGAAACTTTCAATTTCCTCTC-----------------------GTTTGG------------------------------------------G--------------------------------------CTCCGACATAAG-----CCGGGAAACATTTACATTGCACAATATCTAATACATTATCCCCATCCAC--------------------AGGCATCGCCGTGCAGACCATTCTCACGATTCCCGTGAGTCCGCA-GATACCC

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droWil2

ACTGGTTCAGGGTGTACAAGGTGCCCAGCTGCTCATACCCACAGCCCAAGGTAAGGC--------------------------------------------------------------------------------CAGGGATTA-ACTTTAGT------------------------------------------------------TGTG---------------------------------------------------------------------------------------CATGCATATATAGAGTTAGAGGGCG--GACTGGATGGATGGGGTATATCAATAACATAGTTGACTTGACTTGACTTT-GA-----------------GCAGCAAAAAGAATCCTAGTGAAATTTTCC-G-GGACGT------AT------CG-------------------CGG-GTA--------TTAAAGC------TAAAGCGATTAGGTAAACTTTCAATTTCCTCTTCCTCCATTTCTTTGGCCATTCTCGCGTTGACGGTTTGGGAAATGGGCTGGAATAGAAAATCACCAAAATAAGGAAAACTAAAAATGTTCAATCATGCTTGTTGAAAAAGGGTTTTACATAAGGATGCCCAGTAAA-------------------------------CTCCATTGACTTTTGTATTTCATTTCTTTTAGGCATTGCCGTTCAGACCATTTTGACGATTCCTGTGAGTCCGCA-GATACCG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCATTTTGACGATTCCTGTGAGTC............	26	1	1.00	1	0	0	1	0	0

droVir3

GCAGCCGTATGAGAATCAGGAGGTATTGCTGTCGGCGCCAA------ATGATGAGCGTGC-ACAGTATCTGCAGACAAGTCACCTGTCCGAGCAGCCCGAGGAGCTTAACG-----------------AGTCC-AACTGGGAGACAGATGGACTGTTCCCGCCGCCGGGACTGTCACGTCTGGTGCTCGGCCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGGAGCTGG---TAGAGCAACAA---------------------C-----------------------GTCTGG------------------------------------------T--------------------CACCGGCACCGAACA------------------------------GCCGCCCAGTCGTGTGGCCAATGCGCTGCACATGGCG----------------------------GAGCGTCAGGCCGATGGTGAGGACACCTCCGAGG--GTG-AGCAGCC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGCGCTGCACATGGC............................................................................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................C-AACTGGGAGACAGATGGACTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................AGATGGACTGTTCCCGCCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCCAGTCGTGTGGCCAATGCGCTGC...................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA------------------------------GCCGCCCAGTCGTGTGGC..............................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................CACCTGTCCGAGCAGCCCGAGGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................GATGAGCGTGC-ACAGTATCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TGGTGCTCGGCCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGGAGCTG..............................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACCTCCGAGG--GTG-AGCAGCC	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........GAGAATCAGGAGGTATTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................C-AACTGGGAGACAGATGGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................GTCCGAGCAGCCCGAGGAGCTTAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........GAGAATCAGGAGGTATTGCTGTCGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................GCCAA------ATGATGAGCGTGC-ACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.................................................GATGAGCGTGC-ACAGTATCTGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCCAATGCGCTGCACATGGCG----------------------------GAGC...........................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................GTCGGCGCCAA------ATGATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTCGTGTGGCCAATGCGCTGC...................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................GTCC-AACTGGGAGACAGATGGACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCAACAA---------------------C-----------------------GTCTGG------------------------------------------T--------------------CACCG........................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................GGGAGACAGATGGACTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTCGTGTGGCCAATGCGCT.....................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..AGCCGTATGAGAATCAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---------------------C-----------------------GTCTGG------------------------------------------T--------------------CACCGGCACCGAAC...............................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................GTGC-ACAGTATCTGCAGACAAGTCACCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA------------------------------GCCGCCCAGTCGTGTGGCC.............................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................GATGGACTGTTCCCGCCGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................AGGTATTGCTGTCGGCGCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................GC-ACAGTATCTGCAGACAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................ACAAGTCACCTGTCCGAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................CGTCTGGTGCTCGGCCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGGAGCT...............................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................GTCGGCGCCAA------ATGATGAGCGTGC-AC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................TGTCCGAGCAGCCCGAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA------------------------------GCCGCCCAGTCGTGT.................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----------------------------GAGCGTCAGGCCGATGGTGAGG.........................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........GAGAATCAGGAGGTATTGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....CGTATGAGAATCAGGAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGG---TAGAGCAACAA---------------------C-----------------------GTCG..............................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................AGACAAGTCACCTGTCCGAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................CGTCTGGTGCTCGGCCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGGAGCTG..............................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............ATCAGGAGGTATTGCTGTCGGCGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............TCAGGAGGTATTGCTGTCGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................C-AACTGGGAGACAGATGGACTGTTCCCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................TAACG-----------------AGTCC-AACTGGGAGACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAA---------------------C-----------------------GTCTGG------------------------------------------T--------------------CACCGG.......................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GTATTGCTGTCGGCGCCAA------AT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................AG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGGAGCTGG---TAGAGC....................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................C-AACTGGGAGACAGATGGACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................G-----------------AGTCC-AACTGGGAGACAGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................GCCCGAGGAGCTTAACG-----------------AGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................C-AACTGGGAGACAGATGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......GTATGAGAATCAGGAGGTATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------GCCGCCCAGTCGTGTGGC..............................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GTCAGTCGG--TCAGTCAG----------------------------------------T-C------------------------------------------AGTCAGT-----------------CAGTC-AG------------------TC------------------------------------AGTCAGT---------------------------------------------CAGTCAGTCAGTCAGTCATTGAATGGGCTTCTTGTT---GTTGTT-----------TATGCATTTGTAGCGCCAGCAAACG--CAACAGTA-----------GCCA-----GTCGCAGCCTCCAGCTGCCTCT-TGTCCTGGCCTCGTCCTAGCCA--------CGA-CAC-----------G-T-ACTT---------------------------------------------------------------------------------------CATTCTCTCTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA--------------------------------TGATGCAAAAGATTACCA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.............................................................................................................GT-----------------CAGTC-AG------------------TC------------------------------------AGTCAGT---------------------------------------------CAGTCAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	1
..............GTCAG----------------------------------------T-C------------------------------------------AGTCAGT-----------------CAGTC-A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
..................G----------------------------------------T-C------------------------------------------AGTCAGT-----------------CAGTC-AG------------------TC------------------------------------AGTCAGT---------------------------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	1
................................................................................................................................CAGTC-AG------------------TC------------------------------------AGTCAGT---------------------------------------------CAGTCAGTCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	1
...........................................................................................................................................................C------------------------------------AGTCAGT---------------------------------------------CAGTCAGTCAGTCAGTCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	1
..............GTCAG----------------------------------------T-C------------------------------------------AGTCAGT-----------------CAGTC-AG------------------TC------------------------------------AGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	1
..................................................................................................................................GTC-AG------------------TC------------------------------------AGTCAGT---------------------------------------------CAGTCAGTCAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	1
....................................................................................................................................C-AG------------------TC------------------------------------AGTCAGT---------------------------------------------CAGTCAGTCAGTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	1
.........................................................................................................GTCAGT-----------------CAGTC-AG------------------TC------------------------------------AGTCAGT---------------------------------------------CAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	1
..................G----------------------------------------T-C------------------------------------------AGTCAGT-----------------CAGTC-AG------------------T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0
...........................................................................................................CAGT-----------------CAGTC-AG------------------TC------------------------------------AGTCAGT---------------------------------------------CAGTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	1
.......................................................................................................................................G------------------TC------------------------------------AGTCAGT---------------------------------------------CAGTCAGTCAGTCAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	1
.............AGTCAG----------------------------------------T-C------------------------------------------AGTCAGT-----------------CAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0

droGri2

GCTGGTGCAGGGCGTCCAGGGTGCCCAGCTACTCATACCCACAGCGCAAGGTGGGTGCAA-A------------------------------------------ACAAATAACTACACATGCATGTTGTGTGC-TGTGTGGGATTA-GTTTTAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCC-----T-------GGGTATCAATAACATAGTTGACTTCACTTGACTCT-GG------------------CC--------CGG-GCC-----------G-C----AGCC--AAAGT------CG-------------------TTGGTTA--------TTAAAGCCAATGCTAAAGCGATTAGTGT-GCTCTCAATTTCCTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droAna3

GCTGGTGCAGGGCGTTCAGGGCGCCCAGCTGCTCATACCCACGGCCCAAGGTGAGTGGG----------------------------------------------------------------------GTGC-GGTTGGGGGTTTGATTTTAGTT------------------------------------TCCCGGG---------------------------------------------------------------------------------------------------AC-------------------------TGTA-----T-------GGGTATCAATAACATAGTTGACTTGGTTTGACTTTTTG-----------------GCG--------GAT-TTC-----------G-T-GGACGGA--GGAGT------CG-------------------CGGGGCC--------TTAAAGCTTA---TAAAGCGATTAGGTAAACTTTCAATTTCCTCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..................................................GTGAGTGGG----------------------------------------------------------------------GTGC-GGTTGGGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.................................................GGTGAGTGGG----------------------------------------------------------------------GTGC-GGTTGGGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1

droBip1

GCTGGTGCAGGGCGTTCAGGGTGCCCAGCTGCTCATACCCACGGCCCAAGGTGAGTGGGT-G----------------------------------------------------------------------C-GGTTGGGGGTTTGATTTTAGTT------------------------------------TCCCGGG---------------------------------------------------------------------------------------------------TC-------------------------TGTA-----T-------GGGTATCAATAACATAGTTGACTTGGTTTGACTTTTTG-----------------GCG--------GAT-TTC-----------G-T-GGACGAA--GGAGT------CG-------------------CGGGGCC--------TTAAAGCTTA---TAAAGCGATTAGGTAAACTTTCAATTTCCTCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCTGGTGCAGGGCGTCCAGGGGGCCCAGCTGCTCATACCCACGGCCCAAGGTGAGTG---------------------------------------------------ATG-----------------GATAT-AG------------------T------------------------------------------------------TG-----------------------------------------------------------------------------------------------------------------------------------GGGTATCAATAACATAGTTGACTTGGCTTGACTTT-TA-----------------GCG--------AGT-CCT-----------GACAGACTAGC--GGAGT------CG-------------------CGGGGCA--------TTAGAGCCCA---TAAAGCGATTAGGGTAACTTCCAATTTCCTCTC-----------------------TTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ACTGGTGCAGGGGGTGCAGGGCGCCCAGCTGCTCATCCCCACGGCCCAAGGTGAGTGTGC-C------------------------------------------CCACGAG-----------------GGTTCAAG------------------TT------------------------------------GCATGGT------TAGTTG--------------------------------------------------------------------------------------------------------------------GA-----G-------GAGTATCGATAGCACAGTTGACTTGGCTTGACTTC-CA-----------------GCG--------CGTCCTT-----------G-T-GGTCGGT--GAAGT------AG-------------------CGGGGCA--------TGAAAGCCCA---TAAAGCGATTAGGCAAACTTTCAATTTCCTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GCTGGTGCAGGGCGTCCAGGGTGCCCAGCTACTCATACCCACGGCCCAAGGTGAGTGGG-----------------------------------------------------------------------TTT-AG------------------TT------------------------------------TTACGGG------TTGT-----------------------------------------------------------------CGTCTGGGTT------C--------T-------------------------CGTC-----T-------GGGTATCAATAACATAGTTGACTTGGTTTGACTTT-CG-----------------GCG--------CAT-CTC-----------G-T-GGTTGGC--GGGGT------CG-------------------CGGGGCATTA------TAAAGCTCA---TAAAGCGATTAGGGAAACTTTCAATTTCCTCCC---------------------TTTAGTGA------------------------------------------GGAGGG------------------------GAAAAAAGGATTTAACGTAAT-----CCTGGAAA------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GCTGGTGCAGGGCGTCCAGGGCGCCCAGCTGCTCATCCCCACGGCCCAAGGTGAGTGTGT-----------------------------------------------------------------------TT-AGTTTGGCGTTGGGTCTTCGT---------------------------------------------------------C------------------------------------------------------CTG--------CT---CCCTCCAC-------TG-------------------------CGTC-----T-------GGGTATCAATAGCATAGTTGACTTGGCTTGACTTC-CA-----------------GCG--------CAT-CTC-----------G-T-GGTTGGC--GGAGT------CA-------------------CGGG-CATTG------TAAAGCTCA---TAAAGCGATTAGGGAAACTTTCAATTTCCTCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCTGGTGCAGGGCGTCCAGGGAGCCCAGCTGCTCATACCCACGGCCCAAGGTGAGTGTG---------------------------------------------CTCCGAG-----------------GGTCT-AG------------------TT------------------------------------CCGTGGG------TAGTTGTC------------------------------------------------------CTTTGTCCGTCTG----------C-------AG-------------------------TGTC-----C-------TGGTATCAATAACATAGTTGACTTGGTTTGACTTT-----------------------------------CTC-----------G-T-GGCTGCC--GGAGTGCCGGGCA-------------------CGGGGCA-TGGGGCACGAAAGCTCG---TAAAGCGATTAGGGAAACTTTCAATTTCCACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ACTGGTACAGGGCGTCCAGGGCGCCCAGCTGCTCATACCCACGGCCCAAGGTGAGTGGAAAG------------------------------------------CTCCAGG-----------------GGTCT-AG------------------TT------------------------------------CTACGGG------TGGTTGTC------------------------------------------------------CTTTGTCCGTCCG----------G-------AT-------------------------TGTC-----T-------GGGTATCAATAACATAGTTGACTTGGTTTGACTTT-----------------------------------CCC-----------G-T-GGTTGCC--GGAGT------CG-------------------CGGGGCA--------CAAAAGCTCA---TAAAGCGATTAGGAAAACTTTCAATTTCCTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ACTGGTGCAGGGTGTCCAGGGAGCCCAGCTGCTTATACCCACGGCCCAAGGTGAGTGTGT-G------------------------------------------TTATAGG------------------------G------------------TT------------------------------------ATACG----------GTTGTC------------------------------------------------------CCTTGTCCGTCTG----------TTCGTCTGTT-------------------------CGTCC----T-------GGGTATCAATAACATAGTTGACTTGGTTTGACTTT-CA-----------------AAG--------CAT-CTC-----------G-T-GGATGGCTGGGGGT------CA-------------------T-----------------GAGCTCA---TAAAGCGATTAGAGAAACTTTCAATTTCCTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

GCTGGTGCAGGGCGTCCAGGGTGCCCAGCTGCTCATACCCACGGCCCAAGGTGAGTGTGT-G------------------------------------------CTTCACG-----------------GGCTC-AG------------------TT------------------------------------CCCTGGTTTGTAGTAGTTGT-AG--------------------------------------------TAGTAGTGCCTTGTCTGTCTG----------C--------T-------------------------CGTC-----T-------GGGTATCAATAGCATAGTTGACTTGGCTTGACTTT-CA-----------------GCG--------CAG-CTC-----------G-T-GGTTGGT--GGAGT------CA-------------------CGGGGCA-TA------AAAAGCTCG---TAAAGCGATTAGGGCAACTTTCAATTTCCTCC----------------------TCGCGTGG------------------------------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....................TGCCCAGCTGCTCATACCCACGGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......GCAGGGCGTCCAGGGTGCCCAGCTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................CA-----------------GCG--------CAG-CTC-----------G-T-GGTTGG.........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....TGCAGGGCGTCCAGGGTGCCCAGCTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................TT-CA-----------------GCG--------CAG-CTC-----------G-T-GGTTGGT--GG....................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................TTT-CA-----------------GCG--------CAG-CTC-----------G-T-GGTTGG.........................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................................G--------------------------------------------TAGTAGTGCCTTGTCTGTCTG----------C--------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................TT-CA-----------------GCG--------CAG-CTC-----------G-T-GGTTGGT--GGAG..................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................TT-CA-----------------GCG--------CAG-CTC-----------G-T-GGTTGGT--GGA...................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................................................................................................T-AG--------------------------------------------TAGTAGTGCCTTGTCTGTCTG----------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TGGTGCAGGGCGTCCAGGGTGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..TGGTGCAGGGCGTCCAGGGTGCCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droSim2

GCTGGTGCAGGGCGTCCAGGGCGCCCAGCTGCTCATACCCACAGCCCAAGGTGAGTGTGT-G------------------------------------------CTTCACG-----------------GGCTC-AG------------------TT------------------------------------CTCCGGGTTGTAGTAGTTGTG----------------------------------------------CCGTTGTGTTGTGTCCGTCTG----------C--------T-------------------------CGTC-----T-------GGGTATCAATAGCATAGTTGACTTGGCTTGACTTT-CA-----------------GCG--------CAG-CTC-----------G-T-GTTTGGT--TGAGT------CA-------------------CGGGGCA-TA------AAAAGCTCG---TAAAGCGATTAGGGCAACTTTCAATTTCCTCC----------------------TCGCGTGG------------------------------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................GGTATCAATAGCATAGTTGA..................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GCTGGTGCAGGGCGTCCAGGGCGCCCAGCTGCTCATACCCACAGCCCAAGGTGAGTGTGT-G------------------------------------------CTTCACG-----------------GGCTC-AG------------------TT------------------------------------CTCCGGGTTGTAGTAGTTGTG------------------------------------------------------CCTTGTCCGTCTG----------C--------T-------------------------CGTC-----T-------GGGTATCAATAGCATAGTTGACTTGGCTTGACTTT-CA-----------------GCG--------CAG-CTC-----------G-T-GGTTGGT--GGAGT------CA-------------------CGGGGCA-TA------AAAAGCTCG---TAAAGCGATTAGGGCAACTTTCAATTTCCTCC----------------------TCGCGTGG------------------------------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

GCTGGTGCAGGGCGTCCAGGGCGCCCAGCTGCTCATACCCACGGCCCAAGGTGAGTGTGT-GTATGA-------------------------------------CTTTACG-----------------GGCTC-AG------------------TT------------------------------------CTCCGGG------TAGTTGGG------------------------------------------------------CCTTGTCCGTCTG----------CCCGTCTGCT-------------------------CGTC-----T-------GGGTATCAATCGCAAAGTTGACTTGGCTTGACTT--CA-----------------GCG--------CAG-CTC-----------G-T-GGTTGGC--GGAGT------CATAGTCATACCACCATGAGATGGGGCA-TA------AAAAGCTCG---TAAAGCGATTAGGGCAACTTTCAATTTCCTCC----------------------TCGCGTGG------------------------------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

GCTGGTGCAGGGCGTCCAGGGCGCCCAGCTGCTCATACCGACGGCCCAAGGTGAGTGTGT-G------------------------------------------CTGCACG-----------------GGCCA-AG------------------TT------------------------------------CC-CGGG------TAATTGTG------------------------------------------------------CCGTGTCCGTCTG----------C--------T-------------------------CGTC-----T-------GGGTATCAATAGCCAAGTTGACTTGGCTTGACTTC-CA-----------------GCG--------CAG-CTC-----------G-T-GGTTGCT--GGAGT------CA-------------------CGGGGCA-TA------AAAAGCTCG---TAAAGCGATTAGGGCAACTTTCAATTTCCTCC----------------------TCGCGTGG------------------------------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dpe_1034

scaffold_2:2427643-2427888 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads