ID:

dpe_101

Coordinate:

scaffold_13:190682-190742 +

Confidence:

confident

Class:

Testes-restricted

Genomic Locale:

intergenic

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-30.4

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GAGTGATTCCGATTCGTTAGGGGAGAATATATTTCATGGGCTTATATTTTTATTTGTACTCAGACATTTATGTACAATTTGAACGTCATAAATGTTTGCAGCATAAATAGAATTATTAGCCACAAAACCAACCATGAGCTCTCCGTTCCGCGGGTGAAAGT

***********************************.((((((.(((.((((((((((.((((((((((((((.((.........)))))))))))))).)).)))))))))).))).)))).))..***********************************
Read size # Mismatch Hit Count Total Norm Total V111

male body
M042

female body

V050

head

M021

embryo

V057

head

V042

embryo

........................................................................................TAAATGTTTGCAGCATAAATAGA.................................................. 23 0 1 62.00 62 53 4 4 0 1 0
........................................................................................TAAATGTTTGCAGCATAAATAG................................................... 22 0 1 61.00 61 59 0 2 0 0 0
..................................................TATTTGTACTCAGACATTTATG......................................................................................... 22 0 1 29.00 29 1 21 1 6 0 0
..................................................TATTTGTACTCAGACATTTATGT........................................................................................ 23 0 1 3.00 3 0 3 0 0 0 0
........................................................................................TAAATGTTTGCAGCATAAATAGAA................................................. 24 0 1 3.00 3 2 1 0 0 0 0
........................................................................................TAAATGTTTGCAGCATAAATAGT.................................................. 23 1 1 2.00 2 2 0 0 0 0 0
........................................................................................TAAATGTTTGCAGCATAAATA.................................................... 21 0 1 2.00 2 2 0 0 0 0 0
..................................................TATTTGTACTCAGACATTTAT.......................................................................................... 21 0 1 2.00 2 1 1 0 0 0 0
........................................................................................TAAATGTTTGCAGAATAAATAGA.................................................. 23 1 1 1.00 1 1 0 0 0 0 0
........................................................................................TAAATGTTTGCAGCATAAATAGAAAAA.............................................. 27 2 1 1.00 1 1 0 0 0 0 0
..................................................TATTTGTAGTCAGACATTTATG......................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
........................................................................................TAAATGTTTGCAGCATAAATAGAAA................................................ 25 1 1 1.00 1 1 0 0 0 0 0
........................................................................................TAGATGGTTGCAGCATAAATAGA.................................................. 23 2 1 1.00 1 0 0 0 0 0 1
..................................................TATTTGTACTCAGACATTTATGAAA...................................................................................... 25 2 1 1.00 1 1 0 0 0 0 0
........................................................................................TAAATGTTTGCAGGATAAATAGA.................................................. 23 1 1 1.00 1 1 0 0 0 0 0
........................................................................................TAGATGTTTGCAGCATAAATAG................................................... 22 1 1 1.00 1 1 0 0 0 0 0
........................................................................................TAAATGTTTGCAGCATAGATAG................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...................................................ATTTGTACTCAGACATTTATG......................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
........................................................................................TAAATGTTTGCAGCATAAATAGTCC................................................ 25 3 1 1.00 1 0 0 1 0 0 0
........................................................................................TAAATGTTTGCAGCATAAAT..................................................... 20 0 1 1.00 1 1 0 0 0 0 0
........................................................................................TAAATGTCTGCAGCATAAATAGA.................................................. 23 1 1 1.00 1 1 0 0 0 0 0
........................................................................................TAAGTGTTTGCAGCATAAATAGA.................................................. 23 1 1 1.00 1 0 0 0 0 1 0
........................................................................................TAAATGTTTGCAGCATAAATAGATA................................................ 25 2 1 1.00 1 1 0 0 0 0 0
................................................................................................................................CAACAATGAGCTCTCCGG............... 18 2 6 0.17 1 0 0 0 1 0 0
..................................................TATTTTTGCTCGGACATTTAT.......................................................................................... 21 3 13 0.15 2 0 0 0 2 0 0
................................TTAATGGGCTTACTTTTTTA............................................................................................................. 20 3 20 0.05 1 0 0 0 0 1 0

Anti-sense strand reads

CTCACTAAGGCTAAGCAATCCCCTCTTATATAAAGTACCCGAATATAAAAATAAACATGAGTCTGTAAATACATGTTAAACTTGCAGTATTTACAAACGTCGTATTTATCTTAATAATCGGTGTTTTGGTTGGTACTCGAGAGGCAAGGCGCCCACTTTCA

***********************************.((((((.(((.((((((((((.((((((((((((((.((.........)))))))))))))).)).)))))))))).))).)))).))..***********************************
Read size # Mismatch Hit Count Total Norm Total V057

head

V042

embryo

.................................................................................................................................TTCGTACTCATGAGGCAAGGC........... 21 3 2 0.50 1 1 0
...............................................AAAAAAAAAATGAGTCTGTA.............................................................................................. 20 2 11 0.09 1 0 1
..........................................................................GTTAGACGTGCAGTATTGACAAA................................................................ 23 3 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droPer2 scaffold_13:190632-190792 + dpe_101 confident GAGTGATTCCGATTCGTTAGGGGAGAATATATTTCATGGGCTTATATTTTTATTTGTACTCAGACATTTATGTACAATTTGAACGTCATAAATGTTTGCAGCATAAATAGAATTATTAGCCACAAAACCAACCATGAGCTCTCCGTTCCGCGGGTGAAAGT
dp5 XL_group1e:8374324-8374484 - dps_3415 confident GAGTGATTCCGATTCGTTAGGGCAGAATATATTTCATGGGCTTATATTTGTATTTTTGCTCGGACATTTATGTACAATTTGAACGTCATAAATGTTTGCAGCATAGATAGAATTATTAGCCTCAAAACCAACCATGAGCTCTCCGTTCCGCGGGTGAAAAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
GAGTGATTCCGATTCGTTAGGGGAGAATATATTTCATGGGCTTATATTTTTATTTGTACTCAGACATTTATGTACAATTTGAACGTCATAAATGTTTGCAGCATAAATAGAATTATTAGCCACAAAACCAACCATGAGCTCTCCGTTCCGCGGGTGAAAGTSizeHit CountTotal NormTotalM021

Embryo
M042

Female-body
V042

Embryo
V050

Head
V057

Head
V111

Male-body
........................................................................................TAAATGTTTGCAGCATAAATAGA..................................................23162.00620404153
........................................................................................TAAATGTTTGCAGCATAAATAG...................................................22161.00610002059
..................................................TATTTGTACTCAGACATTTATG.........................................................................................22129.00296210101
..................................................TATTTGTACTCAGACATTTATGT........................................................................................2313.003030000
........................................................................................TAAATGTTTGCAGCATAAATAGAA.................................................2413.003010002
........................................................................................TAAATGTTTGCAGCATAAATAGT..................................................2312.002000002
........................................................................................TAAATGTTTGCAGCATAAATA....................................................2112.002000002
..................................................TATTTGTACTCAGACATTTAT..........................................................................................2112.002010001
........................................................................................TAAATGTTTGCAGCATAAATAGAAA................................................2511.001000001
...................................................ATTTGTACTCAGACATTTATG.........................................................................................2111.001010000
........................................................................................TAAATGTTTGCAGCATAAATAGTCC................................................2511.001000100
........................................................................................TAAATGTTTGCAGCATAAAT.....................................................2011.001000001
........................................................................................TAAATGTTTGCAGCATAAATAGATA................................................2511.001000001
dp5
GAGTGATTCCGATTCGTTAGGGCAGAATATATTTCATGGGCTTATATTTGTATTTTTGCTCGGACATTTATGTACAATTTGAACGTCATAAATGTTTGCAGCATAGATAGAATTATTAGCCTCAAAACCAACCATGAGCTCTCCGTTCCGCGGGTGAAAATSizeHit CountTotal NormTotalM022

Male-body
M040

Female-body
M059

Embryo
M062

Head
V043

Embryo
V051

Head
V112

Male-body
SRR902010

Ovary
SRR902011

Testis
SRR902012

CNS imaginal disc
..................................................TATTTTTGCTCGGACATTTATG.........................................................................................226422.672536835216182192022234
..................................................TATTTTTGCTCGGACATTTAT..........................................................................................216204.8312298100131822899502
........................................................................................TAAATGTTTGCAGCATAGATAGA..................................................23289.5017902631542501114
........................................................................................TAAATGTTTGCAGCATAGATAG...................................................22249.50990170118120600
..................................................TATTTTTGCTCGGACATTTATC.........................................................................................22636.172179100024401610
..................................................TATTTTTGCTCGGACATTTATGT........................................................................................23627.00162120092631831
..................................................TATTTTTGCTCGGACATTTATGA........................................................................................23621.67130610001322880
..................................................TATTTTTGCTCGGACATTTA...........................................................................................20620.67124010000801150
..................................................TATTTTTGCTCGGACATTTATT.........................................................................................22618.33110200001100970
..................................................TATTTTTGCTCGGACATTTAA..........................................................................................21613.508110000140750
........................................................................................TAAATGTTTGCAGCATAGATA....................................................21211.002200000130180
..................................................TATTTTTGCTCGGACATTTATCC........................................................................................23610.336230000070520
..................................................TATTTTTGCTCGGACATTT............................................................................................1969.175512010200490
..................................................TATTTTTGCTCGGACATTTATGTA.......................................................................................2468.174900000040450
...............................TTTCATGGGCTTATATTTG...............................................................................................................1967.674601000100440
...................................................ATTTTTGCTCGGACATTTATG.........................................................................................2167.174305000020360
..................................................TATTTTTGCTCGGACATTTATGTACAATT..................................................................................2964.832900000090200
..................................................TATTTTTGCTCGGACATTTATGTC.......................................................................................2464.502730000060180
..................................................TATTTTTGCTCGGACATTTATA.........................................................................................2264.172500000020230
..................................................TATTTTTGCTCGGACATTTATCCC.......................................................................................2464.002440000010190
..................................................TATTTTTGCTCGGACATTTATGTAC......................................................................................2563.832300000000230
...................................................ATTTTTGCTCGGACATTTATGT........................................................................................2263.67220500409040
..................................................TATTTTTGCTCGGACATTTATCA........................................................................................2363.502100000020190
..................................................TATTTTTGCTCGGACATTTT...........................................................................................2063.502100000010200
..................................................TATTTTTGCTCGGACATTTAAA.........................................................................................2263.332000000010190
........................................................................................TAAATGTTTGCAGCATAGATAGAA.................................................2423.0060000000060
..................................................TATTTTTGCTCGGACATTTATGTACAA....................................................................................2762.671600000010150
..................................................TATTTTTGCTCGGACATTTATGTACAAT...................................................................................2862.501500000000150
...............................................................................TGAACGTCATAAATGTTTGCAGCATAG.......................................................2722.5050000000050
........................................................................................TAAATGTTTGCAGCATAGATAA...................................................2222.5050000001040
..................................................TATTTTTGCTCGGACATTTATGTACA.....................................................................................2662.171300000000130
..................................................TATTTTTGCTCGGACATTTATTA........................................................................................2361.671000000000100
...................................................ATTTTTGCTCGGACATTTAT..........................................................................................2061.67100100002070
..................................................TATTTTTGCTCGGACATTTATAA........................................................................................2361.671000000000100
........................................................................................TAAATGTTTGCAGCATAGATC....................................................2121.5030000001020
..................................................TATTTTTGCTCGGACATTTATGTT.......................................................................................2461.5091000004400
........................................................................................TAAATGTTTGCAGCATAGAT.....................................................2021.5030100000020
................................TTCATGGGCTTATATTTG...............................................................................................................1861.3380000000170
...................................................ATTTTTGCTCGGACATTTATGTACAATT..................................................................................2861.1770000001060
..................................................TATTTTTGCTCGGACATTTATGTTT......................................................................................2561.1771000000060
..................................................TATTTTTGCTCGGACATTTC...........................................................................................2061.1770000002050
.........................................................................................AAATGTTTGCAGCATAGATAGA..................................................2221.0020200000000
........................................................................................TAAATGTTTGCAGCATAGA......................................................1921.0020000000020
........................................................................................TAAATGTTTGCAGCATAGATAGAG.................................................2421.0020000001010
........................................................................................TAAATGTTTGCAGCATAGATAGT..................................................2321.0020101000000
........................................................................................TAAATGTTTGCAGCATAGATCT...................................................2221.0020000000020
..................................................TATTTTTGCTCGGACATTTAAAA........................................................................................2360.8350000000050
..................................................TATTTTTGCTCGGACATTTTC..........................................................................................2160.8350000000050
..................................................TATTTTTGCTCGGACATTTATTC........................................................................................2360.8350000000050
..................................................TATTTTTGCTCGGACATT.............................................................................................1860.8351000001030
..................................................TATTTTTGCTCGGACATTA............................................................................................1960.8350000000050
..................................................TATTTTTGCTCGGACATTTCCC.........................................................................................2280.7560000000060
..................................................TATTTTTGCTCGGACATTTCC..........................................................................................2160.6741000000030
..................................................TATTTTTGCTCGGACATTTATCG........................................................................................2360.6740000000040
.................................................GTATTTTTGCTCGGACATTT............................................................................................2060.6740000000040
...................................................ATTTTTGCTCGGACATTTATGTC.......................................................................................2360.6740000003010
..................................................TATTTTTGCTCGGACAT..............................................................................................1760.5030000000030
...............................................................................TGAACGTCATAAATGTTTGCAGCAT.........................................................2520.5010000000010
...................................................ATTTTTGCTCGGACATTTC...........................................................................................1960.5031000000020
..................................................TATTTTTGCTCGGACATTTATTCC.......................................................................................2460.5030000000300
..................................................TATTTTTGCTCGGACA...............................................................................................1660.5030000000030
......................................................TTTGCTCGGACATTTATG.........................................................................................1860.5030000000030
.................................................................................AACGTCATAAATGTTTGCAGC...........................................................2120.5010100000000
..................................................TATTTTTGCTCGGACATTTATGTGAG.....................................................................................2660.5030000000030
........................................................................................TAAATGTTTGCAGCATAGAA.....................................................2020.5010000000010
..................................................TATTTTTGCTCGGACATTTATGC........................................................................................2360.5030020001000
.......................................................................................ATAAATGTTTGCAGCATAGATAGA..................................................2420.5010000000010
..........................................................................................AATGTTTGCAGCATAGATAG...................................................2020.5010000000010
.......................................................................................ATAAATGTTTGCAGCATAGATAG...................................................2320.5010000000010
..................................................TATTTTTGCTCGGACATTTTG..........................................................................................2160.5030000000030
........................................................................................TAAATGTTTGCAGCATAGATAGAT.................................................2420.5010000001000
..................................................TATTTTTGCTCGGACATTTATCCT.......................................................................................2460.3320000000020
..................................................TATTTTTGCTCGGACATTTATTG........................................................................................2360.3320000000020
..................................................TATTTTTGCTCGGACATTTATGTACC.....................................................................................2660.3320000000020
..................................................TATTTTTGCTCGGACATTC............................................................................................1960.3320000010010
.................................................GTATTTTTGCTCGGACATTTATT.........................................................................................2360.3320000000020
..................................................TATTTTTGCTCGGACATTTATTCT.......................................................................................2460.3320000000020
..................................................TATTTTTGCTCGGACATTCT...........................................................................................2060.3320000000020
.....................................................TTTTGCTCGGACATTTAT..........................................................................................1860.3320000000020
..................................................TATTTTTGCTCGGACATTTATGAC.......................................................................................2460.3320000000020
....................................................TTTTTGCTCGGACATTTATGTACAATT..................................................................................2760.3320000000020
..................................................TATTTTTGCTCGGACATTTAC..........................................................................................2160.3320000000020
...................................................ATTTTTGCTCGGACATTTATGC........................................................................................2260.3320000000020
..................................................TATTTTTGCTCGGACATTTATGTCT......................................................................................2560.1710000001000
.....................................................TTTTGCTCGGACATTTATG.........................................................................................1960.1710000000010
..................................................TATTTTTGCTCGGACATTTATGTAT......................................................................................2560.1710000000010
......................................................TTTGCTCGGACATTTATGT........................................................................................1960.1710000000010
....................................................TTTTTGCTCGGACATTTAT..........................................................................................1960.1710000001000
..................................................TATTTTTGCTCGGACATTTCG..........................................................................................2160.1710000000010
.............................TATTTCATGGGCTTATATTTG...............................................................................................................2160.1710000000010
..................................................TATTTTTGCTCGGAC................................................................................................1560.1710000000010
..................................................TATTTTTGCTCGGACATTTATGTAG......................................................................................2560.1710000000010
..................................................TATTTTTGCTCGGACATTTATGAG.......................................................................................2460.1710000000010
..................................................TATTTTTGCTCGGACATTTATGTCTT.....................................................................................2660.1710000000010
......................................................TTTGCTCGGACATTTAT..........................................................................................1760.1710000000010
..................................................TATTTTTGCTCGGACATTTAATC........................................................................................2360.1710000000010
.................................................GTATTTTTGCTCGGACATTTATGTA.......................................................................................2560.1710000000010
...................................................ATTTTTGCTCGGACATTTATGAT.......................................................................................2360.1710000000010
...................................................ATTTTTGCTCGGACATTTATGTACAAT...................................................................................2760.1710000000010
...................................................ATTTTTGCTCGGACATTTATT.........................................................................................2160.1710000001000
..................................................TATTTTTGCTCGGACATTG............................................................................................1960.1710000000010
....................................................TTTTTGCTCGGACATTTATG.........................................................................................2060.1710000000010
..............................ATTTCATGGGCTTATATTTG...............................................................................................................2060.1710000000010
...................................................ATTTTTGCTCGGACATTTATGTAA......................................................................................2460.1710001000000
..................................................TATTTTTGCTCGGACATTTATGTAA......................................................................................2560.1710000000010
...................................................ATTTTTGCTCGGACATTTATGA........................................................................................2260.1710000000010
..................................................TATTTTTGCTCGGACATTCC...........................................................................................2060.1710000000010
..................................................TATTTTTGCTCGGACATTTATGTCA......................................................................................2560.1710000000010
...................................................ATTTTTGCTCGGACATTTAA..........................................................................................2060.1710000000010
..................................................TATTTTTGCTCGGACATTTG...........................................................................................2060.1710000000010
.....................................................TTTTGCTCGGACATTTAA..........................................................................................1870.1410100000000
..................................................TATTTTTGCTCGGACATTTATCCG.......................................................................................2470.1410000001000
..................................................TATTTTTGCTCGGACATTTCA..........................................................................................2170.1410000000010
..................................................TATTTTTGCTCGGACATTCCC..........................................................................................2180.1310000000010
..................................................TATTTTTGCTCGGACATTTTCC.........................................................................................2280.1310000000010
..................................................TATTTTTGCTCGGACATTTTAA.........................................................................................2290.1110000000010

Generated: 10/20/2015 at 06:47 PM