ID:

dpe_1001

 Coordinate:

scaffold_2:1749075-1749356 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-33.1 -33.0 -33.0

Flybase annnotation

CDS [Dper\GL10936-cds]; exon [dper_GLEANR_11059:1]; exon [dper_GLEANR_11059:2]; CDS [Dper\GL10936-cds]; intron [Dper\GL10936-in]

No Repeatable elements found

mature
  1. scaffold_434:8338-8363 -
  2. scaffold_2:1305964-1305989 -
  3. dpe_1001  scaffold_2:1749314-1749339 -
  4. scaffold_2:4356929-4356954 -
  5. scaffold_2:6294598-6294623 -
  6. scaffold_6:2686904-2686929 -
  7. scaffold_3:316832-316857 -
  8. scaffold_4:7032350-7032375 -
  9. scaffold_5:2936172-2936197 -
  10. scaffold_7:1843299-1843324 -
  11. scaffold_8:319534-319559 -
  12. scaffold_9:2889636-2889661 -
  13. scaffold_13:285136-285161 -
  14. scaffold_13:730877-730902 -
  15. scaffold_61:100674-100699 -
  16. scaffold_31:661204-661229 -
  17. scaffold_146:5601-5626 -
  18. scaffold_633:3068-3093 -
  19. scaffold_3864:2302-2327 -
  20. dpe_2448  scaffold_5489:662-687 -
  21. scaffold_157:35495-35520 +
  22. scaffold_2:1751213-1751238 +
  23. scaffold_6:4737306-4737331 +
  24. scaffold_78:49876-49901 +
  25. scaffold_7:1768801-1768826 +
  26. scaffold_13:286980-287005 +
  27. scaffold_13:1844088-1844113 +
  28. scaffold_17:1401982-1402007 +
  29. scaffold_16:139943-139968 +
  30. scaffold_66:272599-272624 +
  31. scaffold_26:185487-185512 +
  32. scaffold_211:31438-31463 +
  33. scaffold_122:28398-28423 +
  34. scaffold_122:33135-33160 +
  35. scaffold_531:46816-46841 +
  36. scaffold_146:7489-7514 +
  37. scaffold_199:12084-12109 +
  38. scaffold_3618:2204-2229 +
  39. scaffold_1125:4474-4499 +
  40. scaffold_5613:1161-1186 +
star
  1. dpe_1001  scaffold_2:1749167-1749186 -
  2. scaffold_2:1958590-1958609 +

Sense Strand Reads

-------------------###############################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTGCGCTCTATCTCTCATGATGACGTCACTCTGGGGTACGGATAGCGCAAGTCGGTGTGTGACAATTTCGTTGTATGAACTGGCACATCTATATACTGTATGGTTAGTGGTACAATACAATGCGGGTACTTGAAAGCACTCGTACTGATAAGGTTTCAAAAAAATGTACATATATGAGTTTAAGAAGCTTTGGTTTGGCAATAAAAGTCAAGGATTTGTTCATGTAAAATGATGTCGGCCATTTGCTCAAACTGGTTTACAGGGTCGTTCTACAGCGGCAGTCCGAAAAGTGCAATAATATGTTTCTTCTAAACATTCTATTTTATTTTTAGCCATCAATATCTACAAGCCAACGGATGCCACGACAAATCCTTCTCTTATT
*******************************************************************..(((((((..((((((.(((.((.....)).))))))))).)))))))....(((((((.((....)).)))))))((((((..((((..............((((((((..((((...(((((((((........))))))))).))))))))))))))))..))))))..********************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M021
embryo
 V111
male body		 M042
female body
 V057
head
 V050
head
 V042
embryo
...................................................................TCGTTGTATGAACTGGCACATCTATA................................................................................................................................................................................................................................................................................................. 26 0 20 7.25 145 145 0 0 0 0 0
............................................................................................ATACTGTATGGTTAGTGGTACA............................................................................................................................................................................................................................................................................ 22 0 6 3.17 19 0 13 0 5 1 0
............................................................................................ATACTGTATGGTTAGTGGTAC............................................................................................................................................................................................................................................................................. 21 0 16 1.06 17 0 17 0 0 0 0
................................................................ATTTCGTTGTATGAACTGGCAC........................................................................................................................................................................................................................................................................................................ 22 0 2 1.00 2 2 0 0 0 0 0
............................................................................................................................................................................................................................CATGTAAAATGATGTCGGCC.............................................................................................................................................. 20 0 2 1.00 2 2 0 0 0 0 0
.................................................................................................................................................TGATAAGGTTTCATAAACATCT....................................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 0 0 1 0
............................................................................................................................................................................................................................................................................................................................................................GCCAACGGATGCCACGAC................ 18 0 2 1.00 2 2 0 0 0 0 0
....................................................................CGTTGTATGAACTGGCACATCTA................................................................................................................................................................................................................................................................................................... 23 0 20 0.75 15 0 0 15 0 0 0
......................................................................................................................................................................................................................................................................................................................................................CTACAAGCCAACGGCTGCCCCGACA............... 25 2 2 0.50 1 0 0 0 0 0 1
.....................................................................................................................................................................................................................................................................................................................................................TCTACAAGCCAACGGATGCC..................... 20 0 2 0.50 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................CCAACGGATGCCACGACAAATCCTTCT...... 27 0 2 0.50 1 0 1 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................................GCCACGACAAATCCTTCTCTTAT. 23 0 2 0.50 1 1 0 0 0 0 0
..................................................................................................................................................................................................................AGGATTTGTTCATGTAAAATG....................................................................................................................................................... 21 0 2 0.50 1 0 1 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................ATCTACAAGCCAACGGATGC...................... 20 0 2 0.50 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................AGCCAACGGATGCCACGAC................ 19 0 2 0.50 1 0 0 0 0 0 1
.........................TCACTCTGGGGTACGGATAG................................................................................................................................................................................................................................................................................................................................................. 20 0 20 0.35 7 0 0 7 0 0 0
...................................................................TCGTTGTATGAACTGGCACATCTATATA............................................................................................................................................................................................................................................................................................... 28 0 20 0.35 7 7 0 0 0 0 0
.................TGATGACGTCACTCTGGGGT......................................................................................................................................................................................................................................................................................................................................................... 20 0 20 0.25 5 0 0 3 2 0 0
...............CATGATGACGTCACTCTGGG........................................................................................................................................................................................................................................................................................................................................................... 20 0 20 0.20 4 2 0 2 0 0 0
.....................................................................GTTGTATGAACTGGCACATCTATA................................................................................................................................................................................................................................................................................................. 24 0 20 0.20 4 0 0 4 0 0 0
...................................................................TCGTTGTAAGAACTGGCACATCTATA................................................................................................................................................................................................................................................................................................. 26 1 20 0.20 4 0 0 4 0 0 0
............................................................................................GTACTGTATGGTTAGTGGTAC............................................................................................................................................................................................................................................................................. 21 1 17 0.18 3 0 3 0 0 0 0
............................................................................................ATACTGTATGGTTAGAGGTACA............................................................................................................................................................................................................................................................................ 22 1 6 0.17 1 0 0 0 1 0 0
............................................................................................ATACTGTATGGTTAGTGGTACAA........................................................................................................................................................................................................................................................................... 23 0 6 0.17 1 0 1 0 0 0 0
............................................................................................GTACTGTATGGTTAGTGGTACA............................................................................................................................................................................................................................................................................ 22 1 6 0.17 1 0 1 0 0 0 0
............................................................................................ATACTGTATGGTTATTGGTACA............................................................................................................................................................................................................................................................................ 22 1 6 0.17 1 0 0 0 1 0 0
......TCTATCTCTCATGATGACGTC................................................................................................................................................................................................................................................................................................................................................................... 21 0 9 0.11 1 0 0 0 1 0 0
........................................................................................CTATATACTGTATGGTTAGTGGTA.............................................................................................................................................................................................................................................................................. 24 0 20 0.10 2 0 0 2 0 0 0
.......................................................................................................................................GCACGCGTACTGATGATGT.................................................................................................................................................................................................................................... 19 3 10 0.10 1 0 1 0 0 0 0
...................ATGACGTCACTCTGGGGTAC....................................................................................................................................................................................................................................................................................................................................................... 20 0 20 0.10 2 0 0 0 0 1 1
.................................................................TTTCGTTGTATGAACTGGCACATC..................................................................................................................................................................................................................................................................................................... 24 0 20 0.10 2 0 0 2 0 0 0
.....................................................................................................................................TAGCACGAGTACTGATAAG...................................................................................................................................................................................................................................... 19 3 10 0.10 1 0 0 0 0 1 0
.......................................................................TGTATGAACTGGCACATCTAT.................................................................................................................................................................................................................................................................................................. 21 0 20 0.10 2 2 0 0 0 0 0
.......................................................................TGTATGAACTGGCACATCTATA................................................................................................................................................................................................................................................................................................. 22 0 20 0.10 2 0 0 2 0 0 0
...........................................................................................TATACTGTATGGTTAGTGGCACAA........................................................................................................................................................................................................................................................................... 24 1 13 0.08 1 0 0 1 0 0 0
...........................................................................................TATACTGTATGGTTAGTGGTAC............................................................................................................................................................................................................................................................................. 22 0 15 0.07 1 0 0 0 0 1 0
..............TCATGATGACGTCACTCTGGGGCA........................................................................................................................................................................................................................................................................................................................................................ 24 1 20 0.05 1 0 0 1 0 0 0
..........................CACTCTGGGGTACGGATAGT................................................................................................................................................................................................................................................................................................................................................ 20 1 20 0.05 1 0 0 1 0 0 0
....................TGACGTCGCTCTGGGGTACG...................................................................................................................................................................................................................................................................................................................................................... 20 1 20 0.05 1 0 0 0 1 0 0
...................................................................TCGTTGTATGAACTGGCTCATCTATA................................................................................................................................................................................................................................................................................................. 26 1 20 0.05 1 1 0 0 0 0 0
..........ACGCGCATGATGACGTCACT................................................................................................................................................................................................................................................................................................................................................................ 20 3 20 0.05 1 0 0 0 0 0 1
..........................................................................................ATATACTGTATGGTTAGTGGTA.............................................................................................................................................................................................................................................................................. 22 0 20 0.05 1 0 0 0 0 1 0
.............................TCTGGGGGACGGATAGCGCAAG........................................................................................................................................................................................................................................................................................................................................... 22 1 20 0.05 1 0 0 1 0 0 0
....................TGACGTCGCTCTGGGGTGCG...................................................................................................................................................................................................................................................................................................................................................... 20 2 20 0.05 1 0 1 0 0 0 0
....................TGACGTCGCTCTGGGGTACGT..................................................................................................................................................................................................................................................................................................................................................... 21 2 20 0.05 1 0 1 0 0 0 0
...................................GTACGGATGGCGCCGGTCGG....................................................................................................................................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 1 0 0
..............TCATGATGACGTCACTCTGGGGTA........................................................................................................................................................................................................................................................................................................................................................ 24 0 20 0.05 1 0 1 0 0 0 0
........................................................................................CTATATACTGTATGGTTAGT.................................................................................................................................................................................................................................................................................. 20 0 20 0.05 1 0 0 0 0 0 1
...........................................................................TGAACTGGCACATCTATATAC.............................................................................................................................................................................................................................................................................................. 21 0 20 0.05 1 1 0 0 0 0 0
..................................................................TTCGTTGTTTGAACTGGCACA....................................................................................................................................................................................................................................................................................................... 21 1 20 0.05 1 0 0 1 0 0 0
...............CATGATGAAGTCACTCTGGG........................................................................................................................................................................................................................................................................................................................................................... 20 1 20 0.05 1 0 0 1 0 0 0
..................................................................TTCGTTGTATGAACTGGCAC........................................................................................................................................................................................................................................................................................................ 20 0 20 0.05 1 0 0 1 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................................AGACAAGACCTTCTCTTATT 20 3 20 0.05 1 0 0 0 0 0 1
......................................................................TTGTATGAGCTGGCACATCTATA................................................................................................................................................................................................................................................................................................. 23 1 20 0.05 1 0 0 1 0 0 0
.......................................................................TGTATGAACTGGCACATCTATAT................................................................................................................................................................................................................................................................................................ 23 0 20 0.05 1 0 0 1 0 0 0
....................TGGCGTCACTCTGGGGTGCG...................................................................................................................................................................................................................................................................................................................................................... 20 2 20 0.05 1 0 0 0 1 0 0
...........................................................................................TATACTGTATGGTTAGTGGTA.............................................................................................................................................................................................................................................................................. 21 0 20 0.05 1 0 0 0 0 0 1
....................TGGCGTCACTCTGGGGTACG...................................................................................................................................................................................................................................................................................................................................................... 20 1 20 0.05 1 0 0 1 0 0 0
..............................................................................ACTGGCACATCTATATACTGT........................................................................................................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 1
.............CTCATGATGACGTCACTCTGGGGTAC....................................................................................................................................................................................................................................................................................................................................................... 26 0 20 0.05 1 0 0 1 0 0 0

Anti-sense strand reads

GACGCGAGATAGAGAGTACTACTGCAGTGAGACCCCATGCCTATCGCGTTCAGCCACACACTGTTAAAGCAACATACTTGACCGTGTAGATATATGACATACCAATCACCATGTTATGTTACGCCCATGAACTTTCGTGAGCATGACTATTCCAAAGTTTTTTTACATGTATATACTCAAATTCTTCGAAACCAAACCGTTATTTTCAGTTCCTAAACAAGTACATTTTACTACAGCCGGTAAACGAGTTTGACCAAATGTCCCAGCAAGATGTCGCCGTCAGGCTTTTCACGTTATTATACAAAGAAGATTTGTAAGATAAAATAAAAATCGGTAGTTATAGATGTTCGGTTGCCTACGGTGCTGTTTAGGAAGAGAATAA
**********************************************************************************************************************************************..(((((((..((((((.(((.((.....)).))))))))).)))))))....(((((((.((....)).)))))))((((((..((((..............((((((((..((((...(((((((((........))))))))).))))))))))))))))..))))))..******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V111
male body		 V057
head
 V050
head
....................................................GCCACACACTGTTAAAGCAACATAC................................................................................................................................................................................................................................................................................................................. 25 0 2 0.50 1 1 0 0 0
.....................................................CCACACACTGTTAAAGCAACATAC................................................................................................................................................................................................................................................................................................................. 24 0 2 0.50 1 1 0 0 0
...............................................................................................................................................................................................................................................................................TGTCGCCGTCAGGCTTTTCA........................................................................................... 20 0 2 0.50 1 0 1 0 0
.................................................TCAGCCACACACTGTTATAGCAACAT................................................................................................................................................................................................................................................................................................................... 26 1 2 0.50 1 1 0 0 0
..................................................................................................................................................................................................................................................................................CGCCGTCAGGCTTTTCACGTT....................................................................................... 21 0 2 0.50 1 0 0 1 0
...................................................................AGCAACATACTTGACCGTGTAGATAT................................................................................................................................................................................................................................................................................................. 26 0 20 0.35 7 7 0 0 0
......AGGTAGAGAGTACTACTGCA.................................................................................................................................................................................................................................................................................................................................................................... 20 1 9 0.11 1 0 1 0 0
...............GTACTACTGCAGTGAGACCC........................................................................................................................................................................................................................................................................................................................................................... 20 0 20 0.10 2 1 1 0 0
...........GAGAGTACTACTGCAGTGAGACCCCAT........................................................................................................................................................................................................................................................................................................................................................ 27 0 20 0.10 2 2 0 0 0
..................................................................................................................................................................................................................................................AACCAGTTGGACCGAATGT......................................................................................................................... 19 3 10 0.10 1 0 0 0 1
.....................CTGCAGTGAGACCCCATGCCTATCGCGT............................................................................................................................................................................................................................................................................................................................................. 28 0 20 0.10 2 2 0 0 0
.....................................................................................................................................................................................................................................................................................CGTCCGGCCCTTCACGTTA...................................................................................... 19 3 20 0.10 2 2 0 0 0
......................TGCAGTGAGACCCCATGCCTATCGCGT............................................................................................................................................................................................................................................................................................................................................. 27 0 20 0.10 2 2 0 0 0
...........GAGAGTACTACTGCAGGGAGACCC........................................................................................................................................................................................................................................................................................................................................................... 24 1 20 0.05 1 1 0 0 0
.......................GCAGTGAGACCCCATGCCTAT.................................................................................................................................................................................................................................................................................................................................................. 21 0 20 0.05 1 1 0 0 0
...........GAGAGTACTACTGCAGTGAGACCCC.......................................................................................................................................................................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0
.........................AGTGAGACCCCATGCCTATCGCGT............................................................................................................................................................................................................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0
..........AGAGAGTACTACTGCAGTGAGACCCCAT........................................................................................................................................................................................................................................................................................................................................................ 28 0 20 0.05 1 1 0 0 0
.......................GCAGTGAGACCCCATGCCTATCGCGT............................................................................................................................................................................................................................................................................................................................................. 26 0 20 0.05 1 1 0 0 0
.................ACTACTGCAGTGAGACCCCATGCCTAT.................................................................................................................................................................................................................................................................................................................................................. 27 0 20 0.05 1 1 0 0 0
....................ACTGCAGTGAGACCCCATGCCTAT.................................................................................................................................................................................................................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0
...................................................................AGCAACATGCTTGACCGTGTAGATAT................................................................................................................................................................................................................................................................................................. 26 1 20 0.05 1 1 0 0 0
...............GTACTACTGCAGTGAGACCCCAT........................................................................................................................................................................................................................................................................................................................................................ 23 0 20 0.05 1 1 0 0 0
.......................GCAGTGAGACCCCATGCCTA................................................................................................................................................................................................................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0
..............................................................................TGACCGTGTAGATATATGAC............................................................................................................................................................................................................................................................................................ 20 0 20 0.05 1 1 0 0 0
........................................................................CATACTTGACCGTGTAGATATATGACAT.......................................................................................................................................................................................................................................................................................... 28 0 20 0.05 1 1 0 0 0
...........GAGAGTACTACTGCAGTGAG............................................................................................................................................................................................................................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0
........................................CTATCGCGTTCAGCCACACACT................................................................................................................................................................................................................................................................................................................................ 22 0 20 0.05 1 1 0 0 0
...........GAGAGTACTACTGCAGTGAGA.............................................................................................................................................................................................................................................................................................................................................................. 21 0 20 0.05 1 1 0 0 0
...........GAGAGTACTACTGCAGTGAGACCCCATG....................................................................................................................................................................................................................................................................................................................................................... 28 0 20 0.05 1 1 0 0 0
..................CTACTGCAGTGAGACCCCGT........................................................................................................................................................................................................................................................................................................................................................ 20 1 20 0.05 1 0 0 1 0
......................TGCAGTGAGACCCCATGCCTGTCGCGT............................................................................................................................................................................................................................................................................................................................................. 27 1 20 0.05 1 1 0 0 0
......................................................................................TAGATATATGACATACCAAT.................................................................................................................................................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_2:1749025-1749406 - dpe_1001 CTGCGCTCTATCTCTCATGATGACGTCACTCTGGGGTACGGATAGCGCAAGTCGGTGTGTGACAATTTCGTTGTATGAACTGGCACATCTATATACTGTATGGTTAGTGGTACAATACAATGCGGGTACTTGAAAGCACTCG------TACTGATAAGGTTTCA-----AAAAAATGTACATATATGAGTTTAAGAAGCTTTGGTTTGGCAATAAAAGTCAAGGATTTGTTCATGTAAAATGA-TGTCGGCCATTTGCTCAAACTGGTTTACAGGGTCGTTCTACAGCGGCAGTCCGAAAAGTGCAATAATATGTTTCTTCTAAACATTCTA-----------------------------------------TTTTATTTTTAGCCATCAATATCTACAAGCCAACGGATGCCACGACAAATCCTTCTCTTATT
dp5 3:1768307-1768548 + dps_951 G---------------------------------------------------------------------------------------------------------------------------------------------------TACTGATAAGGTTTCATTTGAAAAAAATGT----ATATGTGTTTAAGAGGCTTTGGTTTGGCAATAAAAATCAAGGATTTGTTCATGTAAAATGA-TGTCGGCCAGTTGCTCAAACTGGTTTACAGGGTCGTTCTACAGCGGCAGTCCGAAAAGTGCAATAATATGTTTCTTCTAAACATTCTA-----------------------------------------TTTTATTTTTAGCCATCAATATCTACAAGCCAACGGATGCCACGACAAATCCTTCTCTTATT
droWil2 scf2_1100000004514:1154023-1154079 - T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAGCGATTAACGTCTACAAGCCCACCGATGCCACGACCAATCCATCGCTTATC
droVir3 scaffold_12875:11929394-11929485 + AG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGAAGGATCTGTGTCTTCT-AATGCT------------------------------------------GTTTTTAATTTTAGCCATAAATGTCTATAAGCCTACCGATGCCACGACTAACCCATCCCTTATC
droMoj3 scaffold_6496:14931668-14931762 - AATATGTCTTGCAAC-------------------------------------------------------------------------------------------------------------------------------TTGCTT--------------------------------------------------------------------------------------TAAA-------------------------------------------------------------------------------------AATGCA------------------------------------------TTTCTTTATTTTAGCCATAAACATATACAAGCCTACTGATGCCACGACTAATCCATCGCTTATT
droGri2 scaffold_15245:11775535-11775616 + AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTAT-----------TATTAACATG------------------------------------------TTTTCTTTTTTTAGCGATAAATATCTACAAACCTACCGATGCAACGACTAATCCGTCGCTCATT
droAna3 scaffold_13266:5693202-5693357 + TG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAATGAAAGTCGATCGTTGGCCTCGACTGGTT----------------------------------------------TTTTTCCACCCGCCCCATTTTGTCATTGCAATTATTGAGCTTTTCAATTAAAGTGATTGTTTTATTGCAGCCATCAACATATACAAGCCCACAGATGCCACCACAAACCCTTCCCTTATC
droBip1 scf7180000396372:307486-307557 + TA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTTA------------------------------------------TTGTTTTATTGCAGCCATCAACATATACAAGCCCACAGATGCCACCACAAACCCTTCCCTTATC
droKik1 scf7180000302355:410484-410545 + T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCTTAAGCTATCAACATTTACAAGCCTACCGATGCCACGACCAATCCTTCTCTTATT
droFic1 scf7180000453858:1564678-1564751 + TC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-------------------AACAGT------------------------------------------GTTTTTACTTTCAGCTATTAACATCTACAAGCCCACAGATGCCACCACGAATCCCTCTCTTATT
droEle1 scf7180000491214:5256675-5256736 - T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTACTTTCAGCTATTAACATCTACAAGCCCACAGATGCCACGACCAATCCCTCTCTCATT
droRho1 scf7180000766026:4480-4552 + CTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTTT------------------------------------------ATTTTTGATTTCAGCTATTAACATCTACAAGCCCACAGATGCCACGACCAATCCCTCTCTTATT
droBia1 scf7180000302143:353639-353700 + T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTACTTACAGCCATCAACATCTACAAGCCCACAGATGCCACGACCAATCCGTCTCTCATC
droTak1 scf7180000415878:951406-951465 + ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATTCCAGCCATCAACATTTACAAGCCCACAGATGCCACCACCAATCCCTCGCTCATC
droEug1 scf7180000409464:200894-200960 + TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---A-----------------------------------------------------------------TTTCACTTTCAGCCATCAACATATATAAGCCCACAGATGCGACGACTAATCCCTCTCTTATT
dm3 chr2R:19828560-19828629 + AC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTACA-----------------------------------------------------------------CATTGCTTCCAGCCATCAACATCTATAAGCCCACGGATGCCACCACTAATCCCTCCCTCATC
droSim2 2r:20329289-20329358 + AC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTACA-----------------------------------------------------------------CATTGCTTTCAGCCATCAACATCTACAAGCCCACGGATGCCACGACCAATCCATCCCTCATC
droSec2 scaffold_9:3112577-3112646 + AC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTACA-----------------------------------------------------------------CATTGCTTCCAGCCATCAACATCTACAAGCCCACGGATGCCACGACCAATCCATCCCTCATC
droYak3 2R:19806008-19806081 + AAATAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTACC-----------------------------------------------------------------TATTGCTTCCAGCCATCAACATCTACAAGCCCACGGATGCCACCACCAATCCCTCCCTCATC
droEre2 scaffold_4845:21201182-21201251 + AC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTACA-----------------------------------------------------------------TATTGCTTCCAGCTATCAACATCTACAAGCCCACGGATGCCACGACCAATCCGTCGCTCATC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
CTGCGCTCTATCTCTCATGATGACGTCACTCTGGGGTACGGATAGCGCAAGTCGGTGTGTGACAATTTCGTTGTATGAACTGGCACATCTATATACTGTATGGTTAGTGGTACAATACAATGCGGGTACTTGAAAGCACTCG------TACTGATAAGGTTTCA-----AAAAAATGTACATATATGAGTTTAAGAAGCTTTGGTTTGGCAATAAAAGTCAAGGATTTGTTCATGTAAAATGA-TGTCGGCCATTTGCTCAAACTGGTTTACAGGGTCGTTCTACAGCGGCAGTCCGAAAAGTGCAATAATATGTTTCTTCTAAACATTCTA-----------------------------------------TTTTATTTTTAGCCATCAATATCTACAAGCCAACGGATGCCACGACAAATCCTTCTCTTATTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................TCGTTGTATGAACTGGCACATCTATA......................................................................................................................................................................................................................................................................................................................................................26207.2514514500000
............................................................................................ATACTGTATGGTTAGTGGTACA.................................................................................................................................................................................................................................................................................................................................2263.17190001513
............................................................................................ATACTGTATGGTTAGTGGTAC..................................................................................................................................................................................................................................................................................................................................21161.06170000017
................................................................ATTTCGTTGTATGAACTGGCAC.............................................................................................................................................................................................................................................................................................................................................................2221.002200000
.......................................................................................................................................................................................................................................CATGTAAAATGA-TGTCGGCC.......................................................................................................................................................................................2021.002200000
.................................................................................................................................................................................................................................................................................................................................................................................................................GCCAACGGATGCCACGAC................1821.002200000
....................................................................CGTTGTATGAACTGGCACATCTA........................................................................................................................................................................................................................................................................................................................................................23200.75150150000
..........................................................................................................................................................................................................................................................................................................................................................................................................TCTACAAGCCAACGGATGCC.....................2020.501100000
..................................................................................................................................................................................................................................................................................................................................................................................................................CCAACGGATGCCACGACAAATCCTTCT......2720.501000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................GCCACGACAAATCCTTCTCTTAT.2320.501100000
.............................................................................................................................................................................................................................AGGATTTGTTCATGTAAAATG.................................................................................................................................................................................................2120.501000001
.........................................................................................................................................................................................................................................................................................................................................................................................................ATCTACAAGCCAACGGATGC......................2020.501100000
................................................................................................................................................................................................................................................................................................................................................................................................................AGCCAACGGATGCCACGAC................1920.501001000
.........................TCACTCTGGGGTACGGATAG......................................................................................................................................................................................................................................................................................................................................................................................................20200.357070000
...................................................................TCGTTGTATGAACTGGCACATCTATATA....................................................................................................................................................................................................................................................................................................................................................28200.357700000
.................TGATGACGTCACTCTGGGGT..............................................................................................................................................................................................................................................................................................................................................................................................................20200.255030020
...............CATGATGACGTCACTCTGGG................................................................................................................................................................................................................................................................................................................................................................................................................20200.204220000
.....................................................................GTTGTATGAACTGGCACATCTATA......................................................................................................................................................................................................................................................................................................................................................24200.204040000
............................................................................................ATACTGTATGGTTAGTGGTACAA................................................................................................................................................................................................................................................................................................................................2360.171000001
......TCTATCTCTCATGATGACGTC........................................................................................................................................................................................................................................................................................................................................................................................................................2190.111000010
........................................................................................CTATATACTGTATGGTTAGTGGTA...................................................................................................................................................................................................................................................................................................................................24200.102020000
...................ATGACGTCACTCTGGGGTAC............................................................................................................................................................................................................................................................................................................................................................................................................20200.102001100
.................................................................TTTCGTTGTATGAACTGGCACATC..........................................................................................................................................................................................................................................................................................................................................................24200.102020000
.......................................................................TGTATGAACTGGCACATCTAT.......................................................................................................................................................................................................................................................................................................................................................21200.102200000
.......................................................................TGTATGAACTGGCACATCTATA......................................................................................................................................................................................................................................................................................................................................................22200.102020000
...........................................................................................TATACTGTATGGTTAGTGGTAC..................................................................................................................................................................................................................................................................................................................................22150.071000100
..........................CACTCTGGGGTACGGATAGT.....................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
..........................................................................................ATATACTGTATGGTTAGTGGTA...................................................................................................................................................................................................................................................................................................................................22200.051000100
..............TCATGATGACGTCACTCTGGGGTA.............................................................................................................................................................................................................................................................................................................................................................................................................24200.051000001
........................................................................................CTATATACTGTATGGTTAGT.......................................................................................................................................................................................................................................................................................................................................20200.051001000
...........................................................................TGAACTGGCACATCTATATAC...................................................................................................................................................................................................................................................................................................................................................21200.051100000
..................................................................TTCGTTGTATGAACTGGCAC.............................................................................................................................................................................................................................................................................................................................................................20200.051010000
.......................................................................TGTATGAACTGGCACATCTATAT.....................................................................................................................................................................................................................................................................................................................................................23200.051010000
...........................................................................................TATACTGTATGGTTAGTGGTA...................................................................................................................................................................................................................................................................................................................................21200.051001000
..............................................................................ACTGGCACATCTATATACTGT................................................................................................................................................................................................................................................................................................................................................21200.051001000
.............CTCATGATGACGTCACTCTGGGGTAC............................................................................................................................................................................................................................................................................................................................................................................................................26200.051010000
dp5
G---------------------------------------------------------------------------------------------------------------------------------------------------TACTGATAAGGTTTCATTTGAAAAAAATGT----ATATGTGTTTAAGAGGCTTTGGTTTGGCAATAAAAATCAAGGATTTGTTCATGTAAAATGA-TGTCGGCCAGTTGCTCAAACTGGTTTACAGGGTCGTTCTACAGCGGCAGTCCGAAAAGTGCAATAATATGTTTCTTCTAAACATTCTA-----------------------------------------TTTTATTTTTAGCCATCAATATCTACAAGCCAACGGATGCCACGACAAATCCTTCTCTTATTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................................................................................................................................................................................................................................................CAAGCCAACGGATGCCACGACA...............2215.0050300002000
..........................................................................................................................................................................................................................TCAAGGATTTGTTCATGTAAAATG.................................................................................................................................................................................................2421.5030000000300
..................................................................................................................................................................................................................................................................................................................................................................................................CATCAATATCTACAAGCCAACG...........................2211.0010100000000
....................................................................................................................................................................................................................TAAAAATCAAGGATTTGTTCATGT.......................................................................................................................................................................................................2421.0020000000200
.............................................................................................................................................................................................................................................AAATGA-TGTCGGCCAGTTGC.................................................................................................................................................................................2011.0010000001000
..............................................................................................................................................................................................................TGGCAATAAAAATCAAGGATTTGTTCAT.........................................................................................................................................................................................................2821.0020000000200
...............................................................................................................................................................................................................................................................................................................................................................................................................AAGCCAACGGATGCCACGACAAATCCT.........2711.0010001000000
......................................................................................................................................................................................................................................................................................................................................................................................................AATATCTACAAGCCAACGGATGCC.....................2411.0010010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................AAGCCAACGGATGCCACGACAAATC...........2511.0010001000000
............................................................................................................................................................................................................................................................................................................................................................................................................TACAAGCCAACGGATGCCACGA.................2211.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................CATCAATATCTACAAGCCAAC............................2111.0010010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................AAGCCAACGGATGCCACGAC................2011.0010000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................CTACAAGCCAACGGATGCCACGACAA..............2611.0010010000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TCTACAAGCCAACGGATGCCACGAC................2511.0010010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................CTACAAGCCAACGGATGCCACGAC................2411.0010000100000
..............................................................................................................................................................................................................................................AATGA-TGTCGGCCAGTTGCTCAAACTG.........................................................................................................................................................................2711.0010000100000
................................................................................................................................................................................................................................................................................................................................................................................................................AGCCAACGGATGCCACGACA...............2011.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................TACAAGCCAACGGATGCCACGAC................2311.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................AAGCCAACGGATGCCACGA.................1911.0010100000000
.............................................................................................................................................................................................................TTGGCAATAAAAATCAAGGATTTGT.............................................................................................................................................................................................................2520.5010000000100
..................................................................................................................................................................................................................................TTGTTCATGTAAAATGA-TGTCGGCC.......................................................................................................................................................................................2520.5010100000000
...................................................................................................................................................................................................................ATAAAAATCAAGGATTTGTT............................................................................................................................................................................................................2020.5010100000000
droWil2
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAGCGATTAACGTCTACAAGCCCACCGATGCCACGACCAATCCATCGCTTATCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................................................................................................................................................................................................AGCGATTAACGTCTACAAGCCC..............................2211.00100100
.....................................................................................................................................................................................................................................................................................................................................................................................................TAACGTCTACAAGCCCACCGA.........................2111.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................................GCCCACCGATGCCACGACC...............1911.00101000
droVir3
AG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGAAGGATCTGTGTCTTCT-AATGCT------------------------------------------GTTTTTAATTTTAGCCATAAATGTCTATAAGCCTACCGATGCCACGACTAACCCATCCCTTATCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................CTATAAGCCTACCGATGCCACGACT...............2511.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCACGACTAACCCATCCCTT...2311.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................TGTCTATAAGCCTACCGATGCCAC...................2411.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................ATAAGCCTACCGATGCCACGACT...............2311.001000100000000000000000000000000000000000000000000000000000000000
droMoj3
AATATGTCTTGCAAC-------------------------------------------------------------------------------------------------------------------------------TTGCTT--------------------------------------------------------------------------------------TAAA-------------------------------------------------------------------------------------AATGCA------------------------------------------TTTCTTTATTTTAGCCATAAACATATACAAGCCTACTGATGCCACGACTAATCCATCGCTTATTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................ATACAAGCCTACTGATGCCACGACTA..............2611.001100000
droGri2
AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTAT-----------TATTAACATG------------------------------------------TTTTCTTTTTTTAGCGATAAATATCTACAAACCTACCGATGCAACGACTAATCCGTCGCTCATTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................AACCTACCGATGCAACGACTAATCCGT........2711.00110
droAna3
TG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAATGAAAGTCGATCGTTGGCCTCGACTGGTT----------------------------------------------TTTTTCCACCCGCCCCATTTTGTCATTGCAATTATTGAGCTTTTCAATTAAAGTGATTGTTTTATTGCAGCCATCAACATATACAAGCCCACAGATGCCACCACAAACCCTTCCCTTATCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................ACAGATGCCACCACAAACCC..........2011.001100000
...........................................................................................................................................................................................................................................................CGTTGGCCTCGACTGGTT----------------------------------------------T.......................................................................................................................1911.001000010
droBip1
TA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTTA------------------------------------------TTGTTTTATTGCAGCCATCAACATATACAAGCCCACAGATGCCACCACAAACCCTTCCCTTATCSizeHit CountTotal NormTotal
No Reads
droKik1
T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCTTAAGCTATCAACATTTACAAGCCTACCGATGCCACGACCAATCCTTCTCTTATTSizeHit CountTotal NormTotal
No Reads
droFic1
TC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-------------------AACAGT------------------------------------------GTTTTTACTTTCAGCTATTAACATCTACAAGCCCACAGATGCCACCACGAATCCCTCTCTTATTSizeHit CountTotal NormTotal
No Reads
droEle1
T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTACTTTCAGCTATTAACATCTACAAGCCCACAGATGCCACGACCAATCCCTCTCTCATTSizeHit CountTotal NormTotal
No Reads
droRho1
CTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTTT------------------------------------------ATTTTTGATTTCAGCTATTAACATCTACAAGCCCACAGATGCCACGACCAATCCCTCTCTTATTSizeHit CountTotal NormTotal
No Reads
droBia1
T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTACTTACAGCCATCAACATCTACAAGCCCACAGATGCCACGACCAATCCGTCTCTCATCSizeHit CountTotal NormTotal
No Reads
droTak1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATTCCAGCCATCAACATTTACAAGCCCACAGATGCCACCACCAATCCCTCGCTCATCSizeHit CountTotal NormTotal
No Reads
droEug1
TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---A-----------------------------------------------------------------TTTCACTTTCAGCCATCAACATATATAAGCCCACAGATGCGACGACTAATCCCTCTCTTATTSizeHit CountTotal NormTotal
No Reads
dm3
AC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTACA-----------------------------------------------------------------CATTGCTTCCAGCCATCAACATCTATAAGCCCACGGATGCCACCACTAATCCCTCCCTCATCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................AAGCCCACGGATGCCACC..................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCACGGATGCCACCA.................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................CATCAACATCTATAAGCCCAC............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................ATCTATAAGCCCACGGATGCCACC..................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................ACATCTATAAGCCCACGGATGCCACC..................2611.0010000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................CATTGCTTCCAGCCATCAACATCTATAAGCCCACG...........................3511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................CAACATCTATAAGCCCACG...........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................ATAAGCCCACGGATGCCA....................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................AAGCCCACGGATGCCACCACT...............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TCTATAAGCCCACGGATGCCACC..................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................ATAAGCCCACGGATGCCACCACTA..............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................CCACGGATGCCACCACTA..............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................AAGCCCACGGATGCCACCA.................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TCTATAAGCCCACGGATGCCAC...................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................TATAAGCCCACGGATGCC.....................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................AGCCATCAACATCTATAAGCCCA.............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCACGGATGCCACCAC................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................ATAAGCCCACGGATGCCACCACTAAT............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCACGGATGCCACCACTA..............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................ATAAGCCCACGGATGCCACC..................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAATCCCTCCCTCATC1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................CCACCACTAATCCCTCCC.....1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTACA-----------------------------------------------------------------CATTGCTTTCAGCCATCAACATCTACAAGCCCACGGATGCCACGACCAATCCATCCCTCATCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................................AACATCTACAAGCCCACGGAT........................2112.00200101000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................ATCTACAAGCCCACGGATGCCACGACC...............2711.00100010000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................CACGGATGCCACGACCAATC...........2011.00101000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................CAACATCTACAAGCCCACGGAT........................2211.00100000000000100000
...............................................................................................................................................................................................................................................................................................................................................................................................AGCCATCAACATCTACAAGCCCACGGA.........................2711.00100000010000000000
droSec2
AC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTACA-----------------------------------------------------------------CATTGCTTCCAGCCATCAACATCTACAAGCCCACGGATGCCACGACCAATCCATCCCTCATCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................CTACAAGCCCACGGATGCCACGACC...............2512.0020020
..................................................................................................................................................................................................................................................................................................................................................................................................CATCAACATCTACAAGCCCACGG..........................2311.0010010
...................................................................................................................................................................................................................................................................................................................................................................................................ATCAACATCTACAAGCCCACGGA.........................2311.0010001
............................................................................................................................................................................................................................................................................................................................................................................................................TACAAGCCCACGGATGCCA....................1911.0011000
...........................................................................................................................................................................................................................................................................................................................................................................................................CTACAAGCCCACGGATGCCACG..................2211.0010100
.......................................................................................................................................................................................................................................................................................................................................................................................................ACATCTACAAGCCCACGGAT........................2011.0011000
.........................................................................................................................................................................................................................................................................................................................................................................................................ATCTACAAGCCCACGGATGCCACGACC...............2711.0011000
...........................................................................................................................................................................................................................................................................................................................................................................................................CTACAAGCCCACGGATGCCAC...................2111.0010100
................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCACGGATGCCACGACC...............2011.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................CAACATCTACAAGCCCACGG..........................2011.0011000
droYak3
AAATAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTACC-----------------------------------------------------------------TATTGCTTCCAGCCATCAACATCTACAAGCCCACGGATGCCACCACCAATCCCTCCCTCATCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................TCAACATCTACAAGCCCACGGA.........................2212.00200200000000
...........................................................................................................................................................................................................................................................................................................................................................................................................CTACAAGCCCACGGATGCCACCACC...............2511.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................ATCTACAAGCCCACGGATGC......................2011.00100100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................CCACGGATGCCACCACCAATCCCTCCCTCA..3011.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................CTACAAGCCCACGGATGCCACC..................2211.00100100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................CAACATCTACAAGCCCACGGATG.......................2311.00100100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................CTACAAGCCCACGGATGC......................1811.00100100000000
droEre2
AC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTACA-----------------------------------------------------------------TATTGCTTCCAGCTATCAACATCTACAAGCCCACGGATGCCACGACCAATCCGTCGCTCATCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................CTACAAGCCCACGGATGCCAC...................2114.0041000030
.........................................................................................................................................................................................................................................................................................................................................................................................................ATCTACAAGCCCACGGATGC......................2012.0020100010
.........................................................................................................................................................................................................................................................................................................................................................................................................ATCTACAAGCCCACGGATGCCAC...................2312.0020000020
........................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCACGACCAATCCGTCGC.....2211.0011000000
...................................................................................................................................................................................................................................................................................................................................................................................................ATCAACATCTACAAGCCCAC............................2011.0010001000
.................................................................................................................................................................................................................................................................................................................................................................................................CTATCAACATCTACAAGCCCACGGA.........................2511.0011000000
........................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCACGACCAATCCGTCGCT....2311.0010000010
........................................................................................................................................................................................................................................................................................................................................................................................................CATCTACAAGCCCACGGATGCCAC...................2411.0010100000
...................................................................................................................................................................................................................................................................................................................................................................................................................CCACGGATGCCACGACCA..............1811.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................TGCCACGACCAATCCGTCG......1911.0010000010
........................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCACGACCAATCCGTCG......2111.0010000100
...........................................................................................................................................................................................................................................................................................................................................................................................................CTACAAGCCCACGGATGCCACGACC...............2511.0010001000
....................................................................................................................................................................................................................................................................................................................................................................................................TCAACATCTACAAGCCCACGGA.........................2211.0010001000
............................................................................................................................................................................................................................................................................................................................................................................................................TACAAGCCCACGGATGCCAC...................2011.0010000100

Generated: 06/08/2015 at 03:39 PM