ID:

dpe-mir-6-3

 Coordinate:

scaffold_2:8906643-8906725 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-33.4 -32.9 -32.8

Flybase annnotation

utr3 [utr3_minus_3614]; pre_miRNA [Dper\mir-6-3-RM]; miRNA [Dper\miR-6-3-RA]

No Repeatable elements found

mature

  1. dpe-mir-6-1  scaffold_2:8906544-8906565 +
  2. dpe-mir-6-3  scaffold_2:8906700-8906721 +
  3. dpe-mir-6-2  scaffold_2:8906841-8906862 +
star

Sense Strand Reads

ATCGCGTTGTGCAGTGCTTCCAGTTACTCACAAATCCCCGTGCCGTGTCCCCAACCGCAGGGAACCGCTGCTGCTGATATATTATCCACCCATCTTTGACATTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAGTCCAACGATTTGTCATCTCCGCCGCCGCGCATTCACCAA

*******************************************((((....((((((.(((((((.(((((((.(((((((........................)))))))))))))).))))))).))))))))))......*************************************** 		Read size # Mismatch Hit Count Total Norm Total M021

embryo

 M042

female body

 V042

embryo

 V111

male body		 V057

head
...........................................................................................................TATCACAGTGGCTGTTCTTTTT...................................................... 22 0 3 146.00 438 9 413 0 15 1
...........................................................................................................TATCACAGTGGCTGGTCTTTTT...................................................... 22 1 3 135.67 407 406 0 0 1 0
...........................................................................................................TATCACAGTGGCTGGTTTTTTT...................................................... 22 2 3 98.00 294 294 0 0 0 0
...........................................................................................................TATCACAGTGGCTGGTCTTTT....................................................... 21 1 3 83.67 251 248 0 2 1 0
...........................................................................................................TATCACAGTGGCTGGTTTTTT....................................................... 21 2 3 25.67 77 77 0 0 0 0
...........................................................................................................TATCACAGTGGCTGTTCTTTT....................................................... 21 0 3 25.00 75 8 62 0 5 0
...........................................................................................................TATCACAGTGGCTGGTCTTT........................................................ 20 1 3 16.67 50 49 0 0 1 0
............................................................................................................ATCACAGTGGCTGTTCTTTTT...................................................... 21 0 3 14.67 44 0 44 0 0 0
..........................................................AGGGAACCGCTGCTGCTGATAT....................................................................................................... 22 0 1 12.00 12 10 0 2 0 0
..........................................................AGGGAACCGCTGCTGCTGATATA...................................................................................................... 23 0 1 8.00 8 4 0 4 0 0
...........................................................................................................TATCACAGTGGCTGGTGTTTTT...................................................... 22 2 4 8.00 32 32 0 0 0 0
...........................................................................................................TATCACAGTGGCTGTTCTTTTTG..................................................... 23 0 2 5.00 10 0 7 0 3 0
...........................................................................................................TATCACAGTGGCTGTTCTTT........................................................ 20 0 3 5.00 15 6 8 0 1 0
...........................................................................................................TATCACAGGGGCTGTTCTTTTT...................................................... 22 1 3 4.67 14 0 14 0 0 0
...........................................................................................................TATCACATTGGCTGGTCTTTTT...................................................... 22 2 3 3.67 11 11 0 0 0 0
...........................................................................................................TATCACAGTGGCTGGGTTTTTT...................................................... 22 3 4 3.50 14 12 0 1 0 1
..........................................................AGGGAACTGTTGCTGCTGATATA...................................................................................................... 23 2 2 3.50 7 7 0 0 0 0
............................................................................................................ATCACAGTGGCTGTTCTTTT....................................................... 20 0 3 3.00 9 0 9 0 0 0
...........................................................................................................TATCACAGAGGCTGTTCTTTTT...................................................... 22 1 3 2.67 8 0 8 0 0 0
...........................................................................................................TATCACAGTGGCTGGTTTTT........................................................ 20 2 3 2.67 8 8 0 0 0 0
...........................................................................................................TATCACAGTGGCTGGGCTTTTT...................................................... 22 2 3 2.67 8 8 0 0 0 0
...........................................................................................................TATCACAGTGACTGTTCTTTTT...................................................... 22 1 3 2.67 8 2 0 5 0 1
...........................................................................................................TATCACAGTGGCTTTTCTTTTTG..................................................... 23 1 2 2.00 4 4 0 0 0 0
...........................................................................................................TATCACAGTGGCTGGTCTT......................................................... 19 1 3 1.67 5 4 0 1 0 0
...........................................................................................................TATCACAGTGGCTGTTTTTTTT...................................................... 22 1 3 1.67 5 3 0 0 2 0
...........................................................................................................TATCACAGTGGCTGGTGTTTT....................................................... 21 2 4 1.50 6 4 0 1 0 1
...........................................................................................................TATCACAGCGGCTGTTCTTTTT...................................................... 22 1 3 1.33 4 0 4 0 0 0
...........................................................................................................TATCACAGTAGCTGTTCTTTTT...................................................... 22 1 3 1.33 4 0 0 4 0 0
..........................................................AGGGAACCGCTGTTGATGGTATA...................................................................................................... 23 3 1 1.00 1 0 0 1 0 0
...........................................................................................................TATCACAGTTGCTGTTCTTTTT...................................................... 22 1 3 1.00 3 0 2 1 0 0
...........................................................................................................TATCACAGTGGCTGGTCT.......................................................... 18 1 3 1.00 3 3 0 0 0 0
..........................................................AGGGAACCGCTGCTGCTGATATAA..................................................................................................... 24 1 1 1.00 1 1 0 0 0 0
............................................................................................................ATCACAGTGGCTGTTCTTTTTG..................................................... 22 0 2 1.00 2 0 2 0 0 0
...........................................................................................................TATCACAGTGGCTGGGCTTTTTGTTT.................................................. 26 3 1 1.00 1 0 0 1 0 0
..........................................................AGGGAACCGCTGCTGCTGATA........................................................................................................ 21 0 1 1.00 1 0 0 1 0 0
...........................................................................................................TATCACAGCGGCTGTTCTTTT....................................................... 21 1 3 1.00 3 0 3 0 0 0
...........................................................................................................TATCACAGGGGCTGTTCTTTT....................................................... 21 1 3 1.00 3 0 3 0 0 0
...........................................................................................................GATCACAGTGGCTGTTCTTTTT...................................................... 22 1 3 1.00 3 0 3 0 0 0
...........................................................................................................TATCACATTGGCTGTTCTTTTT...................................................... 22 1 3 1.00 3 2 1 0 0 0
...........................................................................................................TATCACAGTGGCTGTTCTT......................................................... 19 0 3 1.00 3 0 3 0 0 0
...........................................................................................................TATCACAGTGCCTGTTCTTTTT...................................................... 22 1 3 0.67 2 0 0 2 0 0
..........................................................................................................ATATCACAGTGGCTGGTCTTTT....................................................... 22 1 3 0.67 2 2 0 0 0 0
...........................................................................................................TATCACAGTGGCCGTTCTTTTT...................................................... 22 1 3 0.67 2 2 0 0 0 0
...........................................................................................................TATCACAGTAGCTGTTCTTTT....................................................... 21 1 3 0.67 2 0 0 1 0 1
...........................................................................................................TATCACAGTGGCTGGTCTTTTTC..................................................... 23 2 3 0.67 2 2 0 0 0 0
.............................................................................................................TCACAGTGGCTGTTCTTTTT...................................................... 20 0 3 0.67 2 0 2 0 0 0
...........................................................................................................TATCACAGTGGCTGGTATTTTT...................................................... 22 2 3 0.67 2 2 0 0 0 0
...........................................................................................................TATCACAGTGGCTGGTCTTTTTG..................................................... 23 1 2 0.50 1 1 0 0 0 0
.............................................................................................................TCACAGTGGCTGTTCTTTTTGA.................................................... 22 1 2 0.50 1 0 1 0 0 0
..........................................................................................................CTATCACAGTGGCTGGTCTT......................................................... 20 2 4 0.50 2 2 0 0 0 0
...........................................................................................................TATCACAGTGGCTAATCTTTTT...................................................... 22 2 4 0.50 2 0 0 2 0 0
............................................................................................................ATCACAGTGGCTGGTCTTTTTG..................................................... 22 1 2 0.50 1 1 0 0 0 0
...........................................................................................................TATCACAGTGGCTGGTCGTTTT...................................................... 22 2 3 0.33 1 0 0 1 0 0
...........................................................................................................TATCACAGTGGCTTTTCT.......................................................... 18 1 3 0.33 1 1 0 0 0 0
...........................................................................................................TATCACAGTGGCTGTTCTTTTG...................................................... 22 1 3 0.33 1 0 1 0 0 0
...........................................................................................................TACCACAGTGGCTGTTCTTTTT...................................................... 22 1 3 0.33 1 0 1 0 0 0
...........................................................................................................TATCACAGTGGCTGGGCTTT........................................................ 20 2 3 0.33 1 0 0 1 0 0
...........................................................................................................TATCACAGGGGCTGTTCTTTTG...................................................... 22 2 3 0.33 1 0 1 0 0 0
...........................................................................................................TATCACGGTGGCTGTTCTTT........................................................ 20 1 3 0.33 1 0 0 1 0 0
.........................................................................................................GTTATCACAGTGGCTGTTCTTTTT...................................................... 24 2 3 0.33 1 0 1 0 0 0
..............................................................................................................CACAGTGGCTGTTCTTTTT...................................................... 19 0 3 0.33 1 0 1 0 0 0
...........................................................................................................TATCACAGTGGCTGTTCTTTTTA..................................................... 23 1 3 0.33 1 0 1 0 0 0
...........................................................................................................TATCACAGTGGCTGGTATTTT....................................................... 21 2 3 0.33 1 1 0 0 0 0
...........................................................................................................TATCACGGTGGCTGGTCTTTTT...................................................... 22 2 3 0.33 1 0 0 1 0 0
...........................................................................................................TATCACAGTGGCTTTTCTT......................................................... 19 1 3 0.33 1 1 0 0 0 0
...........................................................................................................TATCGCAGTGGCTGGTCTTTTT...................................................... 22 2 3 0.33 1 1 0 0 0 0
...........................................................................................................TATCACAGTGGCTGTTCTTTTA...................................................... 22 1 3 0.33 1 0 1 0 0 0
.............................................................................................................TCACAGTGGCTGTTCTTTT....................................................... 19 0 3 0.33 1 0 1 0 0 0
...........................................................................................................TATCACAGTGGCTGGTAGTTTT...................................................... 22 3 3 0.33 1 0 0 1 0 0
...........................................................................................................TATCACGGTGGCTGTTCTTTT....................................................... 21 1 3 0.33 1 0 0 1 0 0
...........................................................................................................TATCACATTGACTGTTCTTTTT...................................................... 22 2 3 0.33 1 1 0 0 0 0
...........................................................................................................TATCACAGTGGCCGGTCTTTTT...................................................... 22 2 3 0.33 1 0 0 1 0 0
...........................................................................................................TATCACAGTGACTGTTCTTTT....................................................... 21 1 3 0.33 1 1 0 0 0 0
...........................................................................................................TATCACATTGGCTGTTCTTTT....................................................... 21 1 3 0.33 1 1 0 0 0 0
...........................................................................................................TATCACAGCGGCTGTTCTTT........................................................ 20 1 3 0.33 1 0 1 0 0 0
............................................................................................................ATAACAGTGGCTGTTCTTTTT...................................................... 21 1 3 0.33 1 0 1 0 0 0
...........................................................................................................TATCACAGAGGCTGTTCTTTT....................................................... 21 1 3 0.33 1 0 1 0 0 0
..........................................................................................................ATATCACAGTGGCTGTTCTTTT....................................................... 22 0 3 0.33 1 0 1 0 0 0
............................................................................................................ATCACAGTCGCTGTTCTTTTT...................................................... 21 1 3 0.33 1 0 1 0 0 0
...........................................................................................................TATAACAGTGGCTGGCCTTTTT...................................................... 22 3 3 0.33 1 0 0 1 0 0
...........................................................................................................TATCACAGTGGCTGTTCTTC........................................................ 20 1 3 0.33 1 1 0 0 0 0
..........................................................................................................ATATCACAGTGGCTGGTTTTTTT...................................................... 23 2 3 0.33 1 1 0 0 0 0
...........................................................................................................CATCACAGTGGTAGTTCTTTT....................................................... 21 3 3 0.33 1 0 0 0 0 1
...........................................................................................................TATCACAGTCGGTGTTCTGTTT...................................................... 22 3 3 0.33 1 0 0 0 0 1
...........................................................................................................TATCACAGTGCCTGGTCTTT........................................................ 20 2 3 0.33 1 0 0 0 0 1
..........................................................................................................ATATCACAGTGGCTGGTTTTTT....................................................... 22 2 3 0.33 1 1 0 0 0 0
............................................................................................................ATCACAGTGGCTGGTCTTTTT...................................................... 21 1 3 0.33 1 1 0 0 0 0
...........................................................................................................TATCACAGGGGCTGTTCTTT........................................................ 20 1 3 0.33 1 0 1 0 0 0
...........................................................................................................TATCACAGTGTCTGTTCTTGCT...................................................... 22 3 3 0.33 1 0 0 1 0 0
...........................................................................................................TACCACAGTGGCTGGTCTTTTT...................................................... 22 2 3 0.33 1 1 0 0 0 0
...........................................................................................................TATCACAGTGGCCGTTCTTTT....................................................... 21 1 3 0.33 1 1 0 0 0 0
...........................................................................................................TATCACAGTGGCTTTTCTTTTT...................................................... 22 1 3 0.33 1 1 0 0 0 0
...........................................................................................................TATCACAGTGGCTGGTGTTT........................................................ 20 2 4 0.25 1 1 0 0 0 0
...........................................................................................................TATCACAGCGGCTGGTCTTT........................................................ 20 2 4 0.25 1 1 0 0 0 0
...........................................................................................................TATCACATTGGCTGTTTTTTTT...................................................... 22 2 4 0.25 1 1 0 0 0 0
...........................................................................................................TATCACAGTGGCTGGGTTTTT....................................................... 21 3 8 0.25 2 2 0 0 0 0
...........................................................................................................TATCACAGCGGCTGGTCTTTT....................................................... 21 2 4 0.25 1 1 0 0 0 0
...........................................................................................................TATCACAGTGGCTGGGCTGTT....................................................... 21 3 4 0.25 1 0 0 1 0 0
...........................................................................................................TATCACAGTGGCTGAGCTTTTT...................................................... 22 2 4 0.25 1 0 0 0 0 1
...........................................................................................................TATCACAGTGGCTGGGATTTTT...................................................... 22 3 4 0.25 1 0 0 1 0 0
...........................................................................................................TATCACAGTGGCTGGTCCT......................................................... 19 2 5 0.20 1 0 0 1 0 0
...........................................................................................................TATCACAGTGGCTGGTGCTTTT...................................................... 22 3 5 0.20 1 0 0 1 0 0
...........................................................................................................TATCATAGTGGCTGGTTTTTTT...................................................... 22 3 5 0.20 1 1 0 0 0 0
...........................................................................................................TATCACAGTGGCTGGTGTT......................................................... 19 2 6 0.17 1 0 0 1 0 0
..........................................................................................................................................................GGTCATGTCCGCCGCGGCGC......... 20 3 6 0.17 1 0 0 0 0 1
..........................................................................................................ATATCACAGTCTCAGTTCTTT........................................................ 21 3 8 0.13 1 0 0 0 0 1
...........................................................................................................TATCACAGTGGCTGTGCTGTG....................................................... 21 3 8 0.13 1 0 0 0 0 1
...........................................................................................................TAGCACAGTGTGTGTTCTTTTT...................................................... 22 3 8 0.13 1 0 0 0 0 1
...........................................................................................................TAGCACTGTGGTTGTTCTTTTT...................................................... 22 3 9 0.11 1 0 0 0 0 1
...........................................................................................................TATCACAGTGGCTGGTGGTT........................................................ 20 3 13 0.08 1 0 0 1 0 0

Anti-sense strand reads

TAGCGCAACACGTCACGAAGGTCAATGAGTGTTTAGGGGCACGGCACAGGGGTTGGCGTCCCTTGGCGACGACGACTATATAATAGGTGGGTAGAAACTGTAAAGATATAGTGTCACCGACAAGAAAAACCAACGTGCCGGTTCAGGTTGCTAAACAGTAGAGGCGGCGGCGCGTAAGTGGTT

***************************************((((....((((((.(((((((.(((((((.(((((((........................)))))))))))))).))))))).))))))))))......******************************************* 		Read size # Mismatch Hit Count Total Norm Total M042

female body

 V057

head
.....................................................................................................................................................GCTAAACAGTAGAGGCGGAGGT............ 22 2 1 1.00 1 1 0
.................................................................................................................................CCAACGTGCCGGCTCAAG.................................... 18 2 4 0.25 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droPer2 scaffold_2:8906593-8906775 + dpe-mir-6-3 Known_mirbase ATCGC-------------------------------GTTGTGCAG--TGCTTCCAG-----------------TT----AC---T-CAC---AAATCCCC----GTGCCGTGTCCCCAACCGCAGGGAACCGCTGCTGCTGATATATTATCCACCCATCTTT--GA-------------------CATTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TCCAACGATTTGTCATCTCCGCCGCCGCGCATT------------------------------------CAC-----------CA-------A
dp5 3:12676897-12677079 - dps-mir-6-2 Known_mirbase ATCGC-------------------------------GTTGTGCAG--TGCTTCCAG-----------------TT----AC---T-GAC---AAATCCCC----GTGCCGTGTCCCCAACCGCAGGGAACCGCTGCTGCTGATATATTATCCACCCATCTTT--GA-------------------CATTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TCCAACGATTTGTCATCTCCGCCGCCGCGCATT------CGC-----------------------------------------CA-------A
droWil2 scf2_1100000004514:1651089-1651305 - dwi-mir-6-2 Known_mirbase AACAA--CACATTCAAAATATTAACAAAAATATTATTTAGTGAAG--TGTTTT---------------------------------------------TT-AA-AGTTTTTGT--TTAACCGCAGGGAACTGTCGCTGCTGATATATA-----TATATTATT--GTTATATATAATTTAAAAATGATTTTCTATATCACAGTGGCTGTTCTTTTTGGTTTTACGATCATT-TTCAACAACTTTATTTTTAGAT---TTC---TC------TGTT-------------------------TTACCGTTTTCTT--TC-------A
droVir3 scaffold_12875:4112726-4112936 + dvi-mir-6-2 Known_mirbase TTCTTAAAT--TGTGAAAA-----------------TTG--------AATAAAT-----------------ATTT----GC---T-GAC---AAATTTCTTAT-GTGCTATGT--TTAACCGCAGGGAACTGCTGCTGCTGATATACTGTATAG--ATT-AT--AT-------------------CGATTCCATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCAATC-CACAACAATTTGTCAGCCG------AAAGTACT-T-T-TATTATTAACTAACTTGTGCAAT---TTGTTCACTTT------------------
droMoj3 scaffold_6496:20936057-20936263 - dmo-mir-6-2 Known_mirbase AACAT---------GA-----------------------GCACAG--T-----------------------ATTC----GC---A-GAC---ATATATCCAGAGAGATTGCGT--TTAACCGCAGGGAACTGCTGCTGCTGATATACTATAT--GTATT--TGTCA-------------------GTACTCTATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCAAATAGCCAACAATTTGTC---TGTGA---AATAAATCTTGAATAGTGTTATCTTAAGTATGTGAT---TTGTT-----CAGTTT---CA-------A
droGri2 scaffold_15112:2108013-2108209 - dgr-mir-6-2 Known_mirbase TGAGT---------AA-------------------------------TGTTATCAA-----------------CC----GC---TGCAT---AAATTC-ACCA-ATGCTATGT--TTAACCACAGGGAACTGCTGCTGCTGATATACAACCAT-----ATTTA-TA-------------------CACGACTATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCCATT-TGCAACGATTTGTCAGT---GT---TTTA-------TTCTATTTTATTTTACGTGTGTTTTTTTTTG-TTAACTC---------C-------A
droAna3 scaffold_13266:9731916-9732108 + dan-mir-6-2 Known_mirbase ATGTT---C--TGTGA-------------------TTTT--------------T--------------------CGTTATCCGAC-GAC---AAATA-TT----ATTCCGGTG--TTAGCCCCAGGGAACTGTTGCTGCTGATATATTATTCTCCCAAAAAAA-AA-------------------ATCACCTATATCACAGTGGCTGTTCTTTTTGGCTGCACCGACAAG-TTCACCGATTTGTCATTTGTGG---CACGCATT------TGTG-------------------------TCACGTTGGTGGACAGA-------A
droBip1 scf7180000396427:874869-875055 + ATTGT---------GA-------------------TTTT--------------T--------------------CGCCATC---C-GACAG-ATATTATT----ATTCCGGTG--TTAACCCCAGGGAACTGTTGCTGCTGATATATTATACTTTC---------G--------------AACT-ATCTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACCGTCAAG-TTCAACAATTTGTCATCTGTGG---CACGAATT------TGTG--------------GCA--------TCACCTTGGTGGAC-AA-------A
droKik1 scf7180000302679:88760-88940 - CTCAT-------------------------------TTG--------------G-GTTTATATTT-----TCTTA----GT---G-TGA--CATT-TCTT----CTACCGTGG--TTAGCCCCAGGGAACTGCTGCTGCTGATATATTATCAA------------G-------------------AATTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TTCAGCGATTTGTCATCAGCGC---GGCCTCAG------TGTA-------------------------TCATCTCTGTTGG--AA-------A
droFic1 scf7180000454039:847454-847634 - TTTTT---------GT--------------------TTT--------------T-CTTTTC----------GTTCG-TATC---T-GAC---AAACATCC----ATTCCGTTT--TTAACCCTAGGGAACTTCTGCTGCTGATATATTATCGA------------A-------------------AACTCGTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGTTAAG-TCCAGCGATTTGTCATCTGCGG---CACGCATT------CGTG-------------------------TCTCCTCAATGTG--AA-------A
droEle1 scf7180000491201:2013392-2013569 - GCCAA--TA--TT-TG-------------------TTTT--------------C-A---------------TTTT----CC---C-GAC---AAATACCC----ATTCCGTTT--TTAACCACAGGGAACTTCTGCTGCTGATATATTATCAA------------A-------------------AACTTTTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGTCAAG-TCCAGCGATTTGTCATACAGGG---AACGGATT------TGTG-------------------------TCACCTCAATTTG--AA-------A
droRho1 scf7180000780066:74187-74357 + CTAGT-------------------------------TTT--------------A-T---------------TTTT----CC---T-GAC---AAATACCA----AGTCTGTTT--TTAACCACAGGGAACTTCTGCTGCTGATATATTATCGA------------A-------------------AACTTTTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TCCAGCGATTTGTCATCCAGGA---AACGCATT------TGTG-------------------------TCACCTCAATTTG--AA-------A
droBia1 scf7180000302143:3059233-3059398 - CGTTT---------------------------------A--------------G-T---------------TCTC----CC---T-GAC---AAGTATCT----ATTCCGTTC--TCAACCCCAGGGAACTTCTGCTGCTGATATATTAACTA------------A-------------------A---GCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAACGATTTGTCATCTGTGG---CACGCATT------TGTG-------------------------TCACCTCAGTGCG--AA-------A
droTak1 scf7180000415384:84564-84744 + CCAGT---------CG-------------------TTTT--------------A-G---------------TTTA----TC---T-GAC---AAACACCC----ATTCCGTTT--TTAACCCCAGGGAACTTCTGCTGCTGATATATTATTGA------------A-------------------AACTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAACGATTTGTCATCTGTGG---CATGCATT------TGTG-------------------------TCAACTGAATGTG--AAAACTGAAA
droEug1 scf7180000409474:2397355-2397535 + TTCGT-------------------------------TTT--------------G-TTTTTTGTTT-----TA-----TATT---T-GAC---AAACAACC----ATGCCGTTT--TTAACCCCAGGGAACCTCTGCTGTTGATATATAATCAG-----------GA-------------------AACTACTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCATCGATTTGTCATCTGTGG---CATGCATT------TGTG-------------------------TCACCTCAATGTG--AA-------A
dm3 chr2R:15548314-15548497 - dme-mir-6-2 Known_mirbase TCATT--------------------------------------------ATTTAATTTTTTTTTT-----TTTTG----GC---A-CAC---GAATAACC----ATGCCGTTT--TTAACCCAAGGGAACTTCTGCTGCTGATATATTATTGA-----------AA-------------------AACTACTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAACGATTTGTCATTTGTGG---CACGCATT------TGTG-------------------------TCACCTCAGTGCG--AA-------A
droSim2 2r:16195586-16195780 - dsi-mir-6-2 Known_mirbase GCAT----------------------------------TTTACATCATTATTTAATTTAC----TTTTTTTTTTC----GC---A-CAC---GAATAACC----ATGCCGTTT--TTAACCCCAGGGAACTTCTGCTGCTGATATATTATTGA-----------AA-------------------AACTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAACGATTTGTCATTTGTGG---CACGCATT------TGTG-------------------------TCACCTCAGTGCG--AA-------A
droSec2 scaffold_1:13063047-13063238 - dse-mir-6-2 Known_mirbase GCAT----------------------------------TTTACATCATTATTTAATTTAC----TTT---TTTTT----GC---A-CAC---GAATAACC----ATGCCGTTT--TTAACCCCAGGGAACTTCTGCTGCTGATATATTATTGA-----------AA-------------------AACTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAACGATTTGTCATTTGTGG---CACGCATT------TGTG-------------------------TCACCTCAGTGCG--AA-------A
droYak3 2R:13624303-13624475 + dya-mir-6-2 Known_mirbase TTTGT---------TG-------------------CTTT--------------------------------TTTT----GC---T-CAC---AAGTAACC----ATACCGTTT--TTAACCGCAGGGAACCTCTGCTGCTGATATATTATTGA-----------GA-------------------AACTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAACGATTTGTCATTTGTGG---CCCGCATT------TTTG-------------------------TCACCTCAGTGCG--AA-------A
droEre2 scaffold_4845:9748568-9748746 - der-mir-6-2 Known_mirbase ATCAT--TT--TGTTG-------------------CCTT--------------A----------------TTTTG----GT---G-CAC---GAAAACCC----ATACCGTTT--TTAACCCCAGGGAACCTCTGCTGCTGATATATTATTGA------------A-------------------AACTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAGCGATTTGTCATTTGTGG---CACGCATT------TGTG-------------------------TCACCTTGGTGCG--AA-------A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
ATCGC-------------------------------GTTGTGCAG--TGCTTCCAG-----------------TT----AC---T-CAC---AAATCCCC----GTGCCGTGTCCCCAACCGCAGGGAACCGCTGCTGCTGATATATTATCCACCCATCTTT--GA-------------------CATTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TCCAACGATTTGTCATCTCCGCCGCCGCGCATT------------------------------------CAC-----------CA-------ASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................................................223146.00438941300115
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................................................21325.00758620005
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................................................21314.67440440000
...........................................................................................................................AGGGAACCGCTGCTGCTGATAT...................................................................................................................................................................................22112.00121002000
...........................................................................................................................AGGGAACCGCTGCTGCTGATATA..................................................................................................................................................................................2318.008404000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG............................................................................................................2325.0010070003
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................................................2035.0015680001
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................................................2033.009090000
...........................................................................................................................AGGGAACCGCTGCTGCTGATATAA.................................................................................................................................................................................2411.001100000
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTG............................................................................................................2221.002020000
...........................................................................................................................AGGGAACCGCTGCTGCTGATA....................................................................................................................................................................................2111.001001000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................................................1931.003030000
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................................................2030.672020000
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGA...........................................................................................................2220.501010000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG.............................................................................................................2230.331010000
....................................................................................................................................................................................................CACAGTGGCTGTTCTTTTT.............................................................................................................1930.331010000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................................................2330.331010000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................................................2230.331010000
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTT..............................................................................................................1930.331010000
................................................................................................................................................................................................ATATCACAGTGGCTGTTCTTTT..............................................................................................................2230.331010000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTC...............................................................................................................2030.331100000
dp5
ATCGC-------------------------------GTTGTGCAG--TGCTTCCAG-----------------TT----AC---T-GAC---AAATCCCC----GTGCCGTGTCCCCAACCGCAGGGAACCGCTGCTGCTGATATATTATCCACCCATCTTT--GA-------------------CATTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TCCAACGATTTGTCATCTCCGCCGCCGCGCATT------CGC-----------------------------------------CA-------ASizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................................................22338201.331146040681510770178307000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................................................2136091.0018273012371700029205000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC.............................................................................................................2231760.0052800452724000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................................................203403.001209013410741000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG............................................................................................................232249.004980794190000000
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................................................213194.005820505770000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTC..............................................................................................................213169.33508025060000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC............................................................................................................233159.004770124641000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................................................233100.003000222770001000
...........................................................................................................................AGGGAACCGCTGCTGCTGATATA..................................................................................................................................................................................23180.0080054802700000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTC...............................................................................................................20362.00186001842000000
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................................................20340.001200106140000000
................................................................................................................................................................................................ATATCACAGTGGCTGTTCTTTT..............................................................................................................22330.339107840000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................................................19327.6783024590000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGC...........................................................................................................24226.505300530000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................................................22324.677406680000000
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................................................20317.0051032190000000
................................................................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT.............................................................................................................23313.674108330000000
...........................................................................................................................AGGGAACCGCTGCTGCTGATAT...................................................................................................................................................................................22113.001300120100000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC...........................................................................................................24310.673206260000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG.............................................................................................................22310.333109220000000
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTT...............................................................................................................1938.332502230000000
..................................................................................................................................................TTATCCACCCATCTTT--GA-------------------CATTTCT....................................................................................................................................2518.0080050300000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTG..............................................................................................................2138.002401230000000
....................................................................................................................................................................................................CACAGTGGCTGTTCTTTTT.............................................................................................................1937.6723010130000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................................................1837.002108130000000
...........................................................................................................................AGGGAACCGCTGCTGCTGATAC...................................................................................................................................................................................2216.0060060000000
................................................................................................................................................................................................ATATCACAGTGGCTGTTCTTT...............................................................................................................2135.331600160000000
.....................................................................................................................................................................................................ACAGTGGCTGTTCTTTTT.............................................................................................................1835.001503120000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGA...........................................................................................................2424.5090090000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA...........................................................................................................2434.001202100000000
...........................................................................................................................AGGGAACCGCTGCTGCTGATA....................................................................................................................................................................................2114.0040030100000
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTG............................................................................................................2224.0080710000000
...........................................................................................................................AGGGAACCGCTGCTGCTGATATC..................................................................................................................................................................................2313.0030010000020
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC............................................................................................................2333.0090180000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA............................................................................................................2332.0060230001000
...............................................................................................TCCCC----GTGCCGTGTCCCCAACCGC.........................................................................................................................................................................................................2412.0020020000000
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTC.............................................................................................................2132.0060150000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGG...........................................................................................................2412.0020110000000
...........................................................................................................................AGGGAACCGCTGCTGCTGA......................................................................................................................................................................................1912.0020000000020
...........................................................................................................................AGGGAACCGCTGCTGCTGAT.....................................................................................................................................................................................2012.0020000101000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTC................................................................................................................1931.6750050000000
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTT................................................................................................................1831.6750500000000
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTG............................................................................................................2121.5030120000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTCC.............................................................................................................2231.3340040000000
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTC............................................................................................................2231.3340310000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCCC..........................................................................................................2531.3340040000000
................................................................................................................................................................................................ATATCACAGTGGCTGTTCTTTC..............................................................................................................2231.0030030000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTA..............................................................................................................2131.0030030000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGGGAA........................................................................................................2711.0010100000000
..............................................................................................ATCCCC----GTGCCGTGTCCCCAACCGC.........................................................................................................................................................................................................2511.0010010000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGGC..........................................................................................................2511.0010010000000
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGC...........................................................................................................2221.0020020000000
..................................................................................................................................................TTATCCACCCATCTTT--GA-------------------CATTTCTA...................................................................................................................................2611.0010000100000
...........................................................................................................................AGGGAACCGCTGCTGCTGATATTC.................................................................................................................................................................................2411.0010000000010
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTAA.............................................................................................................2231.0030020001000
droWil2
AACAA--CACATTCAAAATATTAACAAAAATATTATTTAGTGAAG--TGTTTT---------------------------------------------TT-AA-AGTTTTTGT--TTAACCGCAGGGAACTGTCGCTGCTGATATATA-----TATATTATT--GTTATATATAATTTAAAAATGATTTTCTATATCACAGTGGCTGTTCTTTTTGGTTTTACGATCATT-TTCAACAACTTTATTTTTAGAT---TTC---TC------TGTT-------------------------TTACCGTTTTCTT--TC-------ASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................................................22335155.671054670180701036555
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................................................2138217.002465103441243042
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................................................2031168.673506059534411
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................................................2331099.333298010032880
...........................................................................................................................AGGGAACTGTCGCTGCTGATATA..................................................................................................................................................................................231333.003330213300
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................................................193320.009600609504
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA...........................................................................................................243217.006510506460
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................................................223189.675690405650
...........................................................................................................................AGGGAACTGTCGCTGCTGATAT...................................................................................................................................................................................221136.001360101350
.................................................................................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................................................183128.333850303820
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG............................................................................................................23283.501670601610
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................................................21370.3321101430680
...........................................................................................................................AGGGAACTGTCGCTGCTGATA....................................................................................................................................................................................21162.0062010610
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAAA..........................................................................................................25346.001380001380
.....................................................................................................................................................................................................ACAGTGGCTGTTCTTTTT.............................................................................................................18345.001350101340
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA............................................................................................................23341.671250001250
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC.............................................................................................................22340.331210101200
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC............................................................................................................23332.3397000970
...........................................................................................................................AGGGAACTGTCGCTGCTGAT.....................................................................................................................................................................................20119.0019000190
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG.............................................................................................................22318.6756000560
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................................................20316.00480310170
...........................................................................................................................AGGGAACTGTCGCTGCTGATATAA.................................................................................................................................................................................24111.0011000110
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................................................20310.33310120190
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTA..............................................................................................................2139.3328010270
................................................................................................................................................................................................ATATCACAGTGGCTGTTCTTTT..............................................................................................................2238.6726000260
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTAAA...........................................................................................................2437.3322000220
.......................................................................................................................................................................................TGATTTTCTATATCACAGTGGC.......................................................................................................................2217.00700070
....................................................................................................................................................................................................CACAGTGGCTGTTCTTTTT.............................................................................................................1936.0018000180
................................................................................................................................................................................................ATATCACAGTGGCTGTTCTTT...............................................................................................................2134.6714000140
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTC..............................................................................................................2134.3313000130
............................................................................................................................GGGAACTGTCGCTGCTGATATA..................................................................................................................................................................................2214.00400040
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC...........................................................................................................2433.6711000110
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGA...........................................................................................................2423.50700070
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTAA.............................................................................................................2243.2513000130
...........................................................................................................................AGGGAACTGTCGCTGCTGATATT..................................................................................................................................................................................2313.00300030
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTT...............................................................................................................1932.67807010
.....................................................................................................................................................................................................ACAGTGGCTGTTCTTTTTA............................................................................................................1932.67800080
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTG............................................................................................................2222.50500050
...........................................................................................................................AGGGAACTGTCGCTGCTGATATAT.................................................................................................................................................................................2412.00200020
...........................................................................................................................AGGGAACTGTCGCTGCTGATATC..................................................................................................................................................................................2312.00200020
......................................................................................................A-AGTTTTTGT--TTAACCGC.........................................................................................................................................................................................................1812.00200020
...............................................................................................................................AACTGTCGCTGCTGATATA..................................................................................................................................................................................1912.00200020
...........................................................................................................................AGGGAACTGTCGCTGCTGA......................................................................................................................................................................................1912.00200020
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTT..............................................................................................................1932.00600060
....................................................................................................................................................................................................CACAGTGGCTGTTCTTTT..............................................................................................................1831.67500050
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTAA...........................................................................................................2231.33400040
................................................................................................................................................................................................ATATCACAGTGGCTGTTCTT................................................................................................................2031.33400040
................................................................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT.............................................................................................................2331.33402020
...........................................................................................................................AGGGAACTGTCGCTGCTGATATG..................................................................................................................................................................................2311.00100010
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTG..............................................................................................................2131.00300030
............................................................................................................................GGGAACTGTCGCTGCTGAT.....................................................................................................................................................................................1911.00100010
......................................................................................................................................................................................ATGATTTTCTATATCACAGTGGT.......................................................................................................................2311.00100010
.......................................................................................................................................................................................TGATTTTCTATATCACAGTGGT.......................................................................................................................2211.00100010
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTG............................................................................................................2121.00200020
............................................................................................................................GGGAACTGTCGCTGCTGATAT...................................................................................................................................................................................2111.00101000
....................................................................................................................................................................................................CACAGTGGCTGTTCTTTTTGGT..........................................................................................................2211.00100010
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAAC..........................................................................................................2531.00300030
............................................................................................................................................................................................TTCTATATCACAGTGGCTGTTCT.................................................................................................................2311.00100010
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTGG...........................................................................................................2311.00100010
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGGT..........................................................................................................2311.00100010
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAC...........................................................................................................2431.00301020
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTGA............................................................................................................2330.67200020
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTC...............................................................................................................2030.67200011
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTA............................................................................................................2130.67200020
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC............................................................................................................2330.67200020
droVir3
TTCTTAAAT--TGTGAAAA-----------------TTG--------AATAAAT-----------------ATTT----GC---T-GAC---AAATTTCTTAT-GTGCTATGT--TTAACCGCAGGGAACTGCTGCTGCTGATATACTGTATAG--ATT-AT--AT-------------------CGATTCCATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCAATC-CACAACAATTTGTCAGCCG------AAAGTACT-T-T-TATTATTAACTAACTTGTGCAAT---TTGTTCACTTT------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................................................22334949.671048490030299170000000000000000000000000000000000001433193312825233385284224634757247948683020205523572021149061432062301156613991044884415060934242427422502272
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................................................2135932.671779800754630000000000000000000000000000000000004141814512435630533860650910478455998076453301979104008216197622010020370688662600610
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC............................................................................................................2333316.00994800132000000000000000000000000000000000000001271159533527618240242077764140150644411018770020102435340001012146562221
...........................................................................................................................AGGGAACTGCTGCTGCTGATATA..................................................................................................................................................................................2311766.00176600025000000011013000000000000000010580227318737200009261810000001000000300000022333100000002197510158101
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC...........................................................................................................243570.00171000045100000000000000000000000000000000000001118204955194976180126759060000392000000625010000715453
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................................................203518.001554006361000000000000000000000000000000000000135111015161836316666384439000199000000273343000000369284137137
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC.............................................................................................................223494.671484000109600000000000000000000000000000000000000041101311918233616281800015100100046900010158906
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG............................................................................................................232359.007180001670000000000000000000000000000000000000011511152472715352218151200039000000151398200000664232819
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................................................233179.3353800164000000000000000000000000000000000000001710221517251013134760002200000014191120000005435251824
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCCC..........................................................................................................253126.6738000027000000000000000000000000000000000000000851212442949532731190009200000000500100110000
...........................................................................................................................AGGGAACTGCTGCTGCTGATAT...................................................................................................................................................................................22192.009200010000000000000000000000000000001112600000641112000001000000000001210000001251033
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................................................19350.33151001180000000000000000000000000000000000000002221356410994010170010001260000006822110
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTC..............................................................................................................21335.3310600098000000000000000000000000000000000000000000000001001000510000000000000000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA...........................................................................................................24329.33880001000000000000000000000000000000000000000013244123102000000000052190000011413334
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC............................................................................................................23328.3385001440000000000000000000000000000000000000100011120362330001300000000000000021100
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................................................22326.0078000140000000000000000000000000000000000000001103120510120000000000421300000067924
..................................................................................................................................................CTGTATAG--ATT-AT--AT-------------------CGATTCCA...................................................................................................................................23126.002600000000000000000000000000000000601514000000000000000000000000000000000000000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................................................18321.0063000500000000000000000000000000000000000000010000142112200020000001013000000102268
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTC...............................................................................................................20317.005100050000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG.............................................................................................................22316.334900080000000000000000000000000000000000000000220220100210006000000013000000210052
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................................................21311.333400321000000000000000000000000000000000000000200001010100000200000000100000020000
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGG...........................................................................................................22111.00110002000000000000000000000000000000000000000001011000001000000000000100000020110
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGC...........................................................................................................2429.501900018000000000000000000000000000000000000000000000000000000000000000100000000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCA...........................................................................................................2439.00270003000000000000000000000000000000000000000221112032020000500000000000000001110
................................................................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT.............................................................................................................2337.67230010000000000000000000000000000000000000010031213121003010100000000100000000100
.....................................................................................................................................................................................................ACAGTGGCTGTTCTTTTT.............................................................................................................1837.00210006000000000000000000000000000000000000000010000010010000010000011400000031010
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGGT..........................................................................................................2317.0070002000000000000000000000000000000000000000000000010000000000000001100000010100
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGA...........................................................................................................2426.50130002000000000000000000000000000000000000000000001000000000000000002400000003010
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTCCC...........................................................................................................2436.00180008000000000000000000000000000000000000000000200011101000100000000000003000000
...........................................................................................................................AGGGAACTGCTGCTGCTGATATAA.................................................................................................................................................................................2416.0060000000000000000000000000000000020000100000000000000000000000000000000000001200
.................................................................................................................................................................................................TATCACAGTGGCTGTTC..................................................................................................................1735.67170000000000000000000000000000000000000000000000000010001000000000002400000030222
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTG............................................................................................................2225.50110006000000000000000000000000000000000000000000010000000000000000000300000010000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA............................................................................................................2335.33160002000000000000000000000000000000000000000001000010010000000000031100000102021
..................................................................................................CTTAT-GTGCTATGT--TTAACCGC.........................................................................................................................................................................................................2215.0050000000000000000000000000000000010010200000100000000000000000000000000000000000
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................................................2035.00150007000000000000000000000000000000000000000010100000000000000000000100000011102
...........................................................................................................................AGGGAACTGCTGCTGCTGATA....................................................................................................................................................................................2115.0050000000000000000000000000000000000010100000000001000000000000000000100000000100
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTAAA...........................................................................................................2434.00120000000000000000000000000000000000000000000000000000000000000000033000000110121
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAC...........................................................................................................2433.67110000000000000000000000000000000000000000000031100012001000200000000000000000000
...........................................................................................................................AGGGAACTGCTGCTGCTGATATACTGTATG...........................................................................................................................................................................3013.0030000000000000000000000000000000000000000000120000000000000000000000000000000000
...........................................................................................................................AGGGAACTGCTGCTGC.........................................................................................................................................................................................1613.0030000000000000000000000000000000000000000000210000000000000000000000000000000000
...........................................................................................................................AGGGAACTGCTGCTGCTGAT.....................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000010010000000000000000000000000100
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................................................2033.0090005000000000000000000000000000000000000000010000000000000100000000000000001001
.................................................................................................TCTTAT-GTGCTATGT--TTAACCGC.........................................................................................................................................................................................................2313.0030000000000000000000000000000000000000200001000000000000000000000000000000000000
................................................................................................TTCTTAT-GTGCTATGT--TTAACCGC.........................................................................................................................................................................................................2413.0030000000000000000000000000000000010011000000000000000000000000000000000000000000
...................................................................................................TTAT-GTGCTATGT--TTAACCGC.........................................................................................................................................................................................................2113.0030000000000000000000000000000000000000200000100000000000000000000000000000000000
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTC............................................................................................................2233.0090008000000000000000000000000000000000000000000000000001000000000000000000000000
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTGG...........................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000010010
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGGC..........................................................................................................2312.0020001000000000000000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................GCAGGGAACTGCTGCTGCTGATA....................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000001001
..........................................................................................................................CAGGGAACTGCTGCTGCTGATATA..................................................................................................................................................................................2412.0020000000000000000000000000000000000000100000000000000000000000000000000000010000
...........................................................................................................................AGGGAACTGCTGCTGCTGA......................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000010000000000000000000000100000000000
....................................................................................................................................................................................................CACAGTGGCTGTTCTTTTT.............................................................................................................1932.0060013000000000000000000000000000000000000000100000000000000000000000000000000001
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTAC............................................................................................................2332.0060001000000000000000000000000000000000000000000100020010000100000000000000000000
...........................................................................................................................AGGGAACTGCTGCTGCTGATATT..................................................................................................................................................................................2312.0020000000000000000000000000000000010000000000001000000000000000000000000000000000
................................................................................................................................................................................................ATATCACAGTGGCTGTTCTTTT..............................................................................................................2231.6750000000000000000000000000000000000000000000000010030000000000000000000000000010
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTACC..........................................................................................................2531.6750000000000000000000000000000000000000000000000000001100000300000000000000000000
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGC...........................................................................................................2221.5030002000000000000000000000000000000000000000000000000001000000000000000000000000
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTG............................................................................................................2121.5030001000000000000000000000000000000000000000000000000000000200000000000000000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTAC.............................................................................................................2231.3340002000000000000000000000000000000000000000000001000000000000000000100000000000
droMoj3
AACAT---------GA-----------------------GCACAG--T-----------------------ATTC----GC---A-GAC---ATATATCCAGAGAGATTGCGT--TTAACCGCAGGGAACTGCTGCTGCTGATATACTATAT--GTATT--TGTCA-------------------GTACTCTATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCAAATAGCCAACAATTTGTC---TGTGA---AATAAATCTTGAATAGTGTTATCTTAAGTATGTGAT---TTGTT-----CAGTTT---CA-------ASizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................................................223175659.67526979301005269462
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................................................21371420.67214262141002142425
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC............................................................................................................2339565.33286966000286900
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................................................2035461.67163853000163802
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC.............................................................................................................2234979.00149371000149360
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTC..............................................................................................................2131153.673461000034610
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC...........................................................................................................243749.332248000022480
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG............................................................................................................232623.501247100012442
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTC...............................................................................................................203612.001836000018360
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................................................213393.671181200011790
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................................................193276.6783001008281
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................................................233230.3369100006910
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGG...........................................................................................................221142.0014200001420
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................................................203132.3339710003960
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTG............................................................................................................22295.5019100001910
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................................................20389.6726900002690
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................................................22389.6726900002690
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTGG...........................................................................................................23186.00860000860
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGGT..........................................................................................................23180.00800000800
...........................................................................................................................AGGGAACTGCTGCTGCTGATATA..................................................................................................................................................................................23175.007501700580
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC............................................................................................................23368.6720600002060
....................................................................................................................................................................................................CACAGTGGCTGTTCTTTTT.............................................................................................................19365.3319600001960
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCCC..........................................................................................................25353.6716100001610
.....................................................................................................................................................................................................ACAGTGGCTGTTCTTTTT.............................................................................................................18347.6714300001430
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTG..............................................................................................................21346.6714000001400
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGG...........................................................................................................24141.00410000410
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGC...........................................................................................................24234.50690000690
................................................................................................................................................................................................ATATCACAGTGGCTGTTCTTT...............................................................................................................21331.33940000940
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTT..............................................................................................................19331.33940000940
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGGC..........................................................................................................23130.00300000300
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG.............................................................................................................22328.67860000860
....................................................................................................................................................................................................CACAGTGGCTGTTCTTTT..............................................................................................................18328.33850000850
.................................................................................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................................................18326.33790000790
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGGTT.........................................................................................................24126.00260000260
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTC............................................................................................................22316.00480000480
...........................................................................................................................AGGGAACTGCTGCTGCTGATAT...................................................................................................................................................................................22115.00150401100
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTC................................................................................................................19314.67440000440
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGGTC.........................................................................................................24112.00120000120
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTT...............................................................................................................19311.00330000330
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTG............................................................................................................21210.50210000210
................................................................................................................................................................................................ATATCACAGTGGCTGTTCTTTT..............................................................................................................22310.00300000300
....................................................................................................................................................................................................CACAGTGGCTGTTCTTTTTC............................................................................................................2039.33280000280
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGC...........................................................................................................2229.00180000180
...........................................................................................................................AGGGAACTGCTGCTGCTGATA....................................................................................................................................................................................2118.008010070
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTC.............................................................................................................2137.33220000220
droGri2
TGAGT---------AA-------------------------------TGTTATCAA-----------------CC----GC---TGCAT---AAATTC-ACCA-ATGCTATGT--TTAACCACAGGGAACTGCTGCTGCTGATATACAACCAT-----ATTTA-TA-------------------CACGACTATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCCATT-TGCAACGATTTGTCAGT---GT---TTTA-------TTCTATTTTATTTTACGTGTGTTTTTTTTTG-TTAACTC---------C-------ASizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................................................2262.5015105
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................................................2161.831129
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................................................2060.33202
droAna3
ATGTT---C--TGTGA-------------------TTTT--------------T--------------------CGTTATCCGAC-GAC---AAATA-TT----ATTCCGGTG--TTAGCCCCAGGGAACTGTTGCTGCTGATATATTATTCTCCCAAAAAAA-AA-------------------ATCACCTATATCACAGTGGCTGTTCTTTTTGGCTGCACCGACAAG-TTCACCGATTTGTCATTTGTGG---CACGCATT------TGTG-------------------------TCACGTTGGTGGACAGA-------ASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................................................22315043.3345130367447520074
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................................................2133049.3391489790392028
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC.............................................................................................................223462.001386013860000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................................................203276.00828267920082
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTC..............................................................................................................21357.6717301720001
...........................................................................................................................AGGGAACTGTTGCTGCTGATATA..................................................................................................................................................................................23143.00430348001
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTC...............................................................................................................20337.0011101110000
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................................................21335.6710740670000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC............................................................................................................23334.6710401040000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................................................23333.671013980000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................................................19317.33528390023
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG............................................................................................................23214.00282240011
...........................................................................................................................AGGGAACTGTTGCTGCTGATAT...................................................................................................................................................................................22112.0012092100
....................................................................................................................................................................................................CACAGTGGCTGTTCTTTTT.............................................................................................................1938.67260260000
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................................................2038.00245190000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................................................1836.00180180000
.....................................................................................................................................................................................................ACAGTGGCTGTTCTTTTT.............................................................................................................1836.00180180000
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................................................2036.00187110000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................................................2235.33160150001
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTG..............................................................................................................2134.33130130000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG.............................................................................................................2233.3310190000
..................................................................................................................................................TTATTCTCCCAAAAAAA-AA-------------------ATCACCTA...................................................................................................................................2713.003030000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA...........................................................................................................2433.009170010
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGT...........................................................................................................2422.505050000
...........................................................................................................................AGGGAACTGTTGCTGCTGAT.....................................................................................................................................................................................2012.002020000
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTT...............................................................................................................1932.006330000
...........................................................................................................................AGGGAACTGTTGCTGCTGATA....................................................................................................................................................................................2112.002020000
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTT..............................................................................................................1931.675050000
................................................................................................................................................................................................ATATCACAGTGGCTGTTCTTTT..............................................................................................................2231.675050000
..................................................................................................................................................TTATTCTCCCAAAAAAA-AA-------------------ATCACCT....................................................................................................................................2611.001010000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTC................................................................................................................1931.003030000
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTC.............................................................................................................2131.003030000
..........................................................................................................................CAGGGAACTGTTGCTGCTGATATA..................................................................................................................................................................................2411.001010000
...........................................................................................................................AGGGAACTGTTGCTGCTGATAC...................................................................................................................................................................................2211.001010000
.............................................................................................AATA-TT----ATTCCGGTG--TTAGCCCC.........................................................................................................................................................................................................2311.001010000
...........................................................................................................................AGGGAACTGTTGCTGCTGATATT..................................................................................................................................................................................2311.001010000
....................................................................................................................................................................................................CACAGTGGCTGTTCTTTT..............................................................................................................1830.672020000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTAC.............................................................................................................2230.672020000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA............................................................................................................2330.672020000
................................................................................................................................................................................................ATATCACAGTGGCTGTTCTTT...............................................................................................................2130.672020000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGA...........................................................................................................2420.501010000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTGA............................................................................................................2330.331010000
droBip1
ATTGT---------GA-------------------TTTT--------------T--------------------CGCCATC---C-GACAG-ATATTATT----ATTCCGGTG--TTAACCCCAGGGAACTGTTGCTGCTGATATATTATACTTTC---------G--------------AACT-ATCTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACCGTCAAG-TTCAACAATTTGTCATCTGTGG---CACGAATT------TGTG--------------GCA--------TCACCTTGGTGGAC-AA-------ASizeHit CountTotal NormTotal
No Reads
droKik1
CTCAT-------------------------------TTG--------------G-GTTTATATTT-----TCTTA----GT---G-TGA--CATT-TCTT----CTACCGTGG--TTAGCCCCAGGGAACTGCTGCTGCTGATATATTATCAA------------G-------------------AATTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TTCAGCGATTTGTCATCAGCGC---GGCCTCAG------TGTA-------------------------TCATCTCTGTTGG--AA-------ASizeHit CountTotal NormTotal
No Reads
droFic1
TTTTT---------GT--------------------TTT--------------T-CTTTTC----------GTTCG-TATC---T-GAC---AAACATCC----ATTCCGTTT--TTAACCCTAGGGAACTTCTGCTGCTGATATATTATCGA------------A-------------------AACTCGTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGTTAAG-TCCAGCGATTTGTCATCTGCGG---CACGCATT------CGTG-------------------------TCTCCTCAATGTG--AA-------ASizeHit CountTotal NormTotal
No Reads
droEle1
GCCAA--TA--TT-TG-------------------TTTT--------------C-A---------------TTTT----CC---C-GAC---AAATACCC----ATTCCGTTT--TTAACCACAGGGAACTTCTGCTGCTGATATATTATCAA------------A-------------------AACTTTTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGTCAAG-TCCAGCGATTTGTCATACAGGG---AACGGATT------TGTG-------------------------TCACCTCAATTTG--AA-------ASizeHit CountTotal NormTotal
No Reads
droRho1
CTAGT-------------------------------TTT--------------A-T---------------TTTT----CC---T-GAC---AAATACCA----AGTCTGTTT--TTAACCACAGGGAACTTCTGCTGCTGATATATTATCGA------------A-------------------AACTTTTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TCCAGCGATTTGTCATCCAGGA---AACGCATT------TGTG-------------------------TCACCTCAATTTG--AA-------ASizeHit CountTotal NormTotal
No Reads
droBia1
CGTTT---------------------------------A--------------G-T---------------TCTC----CC---T-GAC---AAGTATCT----ATTCCGTTC--TCAACCCCAGGGAACTTCTGCTGCTGATATATTAACTA------------A-------------------A---GCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAACGATTTGTCATCTGTGG---CACGCATT------TGTG-------------------------TCACCTCAGTGCG--AA-------ASizeHit CountTotal NormTotal
No Reads
droTak1
CCAGT---------CG-------------------TTTT--------------A-G---------------TTTA----TC---T-GAC---AAACACCC----ATTCCGTTT--TTAACCCCAGGGAACTTCTGCTGCTGATATATTATTGA------------A-------------------AACTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAACGATTTGTCATCTGTGG---CATGCATT------TGTG-------------------------TCAACTGAATGTG--AAAACTGAAASizeHit CountTotal NormTotal
No Reads
droEug1
TTCGT-------------------------------TTT--------------G-TTTTTTGTTT-----TA-----TATT---T-GAC---AAACAACC----ATGCCGTTT--TTAACCCCAGGGAACCTCTGCTGTTGATATATAATCAG-----------GA-------------------AACTACTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCATCGATTTGTCATCTGTGG---CATGCATT------TGTG-------------------------TCACCTCAATGTG--AA-------ASizeHit CountTotal NormTotal
No Reads
dm3
TCATT--------------------------------------------ATTTAATTTTTTTTTT-----TTTTG----GC---A-CAC---GAATAACC----ATGCCGTTT--TTAACCCAAGGGAACTTCTGCTGCTGATATATTATTGA-----------AA-------------------AACTACTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAACGATTTGTCATTTGTGG---CACGCATT------TGTG-------------------------TCACCTCAGTGCG--AA-------ASizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................................................22320801.006240300008135722249235251300000010000000000000000000000000000000000000500000000000000000000000020472170000000000000000000000000110000000000000000000000000000100000000000000000000000010000000000000000000000100000000000000000000000010015459211244212162759343046154161800002000000000000000000000000000000000197080077012300000000637004648179130060059000010003175384212536104243868269366685913240
...........................................................................................................................AGGGAACTTCTGCTGCTGATATA..................................................................................................................................................................................23114804.00148040000001091822520000000000000000000000020000000000000000000000000000000000000000000010003566735100542204010004004000219110014145435579001801213890020001000000200000000001024967614049100010000000000000000000200000100000000001000000000000100000000000000000022001711900040000421100000000000000010000100000010001000000000000000004567000100200000000010000000010000000010010000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................................................2134534.671360400003046283290234340100000000000000000000000000000000000001000020000000000000000000000000015020000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000010000000000000000110033120213534787185631510020300000000000000000000000000000000000000043028028049000000004601738273180020016000000014114203192122726892863001423102157210
...........................................................................................................................AGGGAACTTCTGCTGCTGATAT...................................................................................................................................................................................2212093.002093000000841510000000000000000000000008300000000000000000000000000000000000000000000006158915685150100012000001001200002849000484064000000000000000000000000121477130000000000000000000000000000000000000000000000000000000000000000000000000000015041002000020900000000000000000000000000000000000000000000000005151300000000000000000000000000000000000000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................................................203778.672336000000415183400000000000000000000000000000000000000000000001000000000000000000000000001410000100000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000300000000000000000000000000116410359327647014400000000000000000000000000000000000000117050705000010004796813404002000000031024081110015011117437113172927090
...........................................................................................................................AGGGAACTTCTGCTGCTGAT.....................................................................................................................................................................................201426.0042600000000100000000000000000000000004020000000000000000000000000000000000000000000000000310000000000000000000000000000300000000000000000000000002400000000000000000000000000000000000000000000000000000000000000000000000000000000001000000001100000000000000001000000000000000000000000000000005100000000000000000000000000000000000000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................................................193418.331255000000000000000000000000000000000000000000000000000000001000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000100205110201100080000000000000000000000000000000000000003010310000000003846242015000010000011000100100000002641223295323030
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG............................................................................................................232281.005620000003121360000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004203249014500200000000000000000000000000000000000000010002000000000003298700000000000000001003000030000003690011010
...........................................................................................................................AGGGAACTTCTGCTGCTGATATAT.................................................................................................................................................................................241269.00269000000330000000000000000000000000010000000000000000000000000000000000000000000000732541350000000000000007000011900050015000000000000000000000000014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000071000000000000000000000000000000000010000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC............................................................................................................233152.334570000000901000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003014002000000000000000000000000000000000000000201010000000000112630600000000000000000000000000000000000000000
...........................................................................................................................AGGGAACTTCTGCTGCTGATA....................................................................................................................................................................................211139.00139000000100000000000000000000000000032000000000000000000000000000000000000000000000067955000000000000000000000000040000000000000000000000000000614000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000042500000000000000000000000000000000100000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................................................223125.00375000020241847730000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000140004063004000000000000000000000000000000000000000301040200000000011300000101000000001101000010000101200000010
..........................................................................................................................AAGGGAACTTCTGCTGCTGATATA..................................................................................................................................................................................241117.00117000000140000000000000000000000000000000000000000000000000000000000000000000000000472100240000000000000100000083000100300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000
................................................................................................AACC----ATGCCGTTT--TTAACCCA.........................................................................................................................................................................................................211112.00112000000230000000000000000000000000000000000000000000000000000000000000000000000000314303000000000000000000000860005001000000000000000000000000013000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000015000000000000000000000000000000000000000000
...............................................................................................TAACC----ATGCCGTTT--TTAACCCA.........................................................................................................................................................................................................221103.0010300000000000000000000000000000000000000000000000000000000000000000000000000000000016180325000000000000000000000200001090000000000000000000000000212300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000
............................................................................................................................GGGAACTTCTGCTGCTGATATA..................................................................................................................................................................................22184.0084000000240000000000000000000000000000000000000000000000000000000000000000000000000271100220000000000000001000005000000000100000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................................................23371.0021300000012894000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000251133034410008000000000000000000000000000000000000000100101001300000000016200000300000000000000000000000001170000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC.............................................................................................................22370.332110000001459311310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000130500010000000000000000000000000000000000000001000000000000000571400000000000000000000000000000000110000000
...........................................................................................................................AGGGAACTTCTGCTGCTGATATAA.................................................................................................................................................................................24153.00530000000000000000000000000000000000100000000000000000000000000000000000000000000005502400000000000000000000000000007000000000000000000000000014030000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000
.................................................................................................ACC----ATGCCGTTT--TTAACCCA.........................................................................................................................................................................................................20151.00510000000000000000000000000000000000000000000000000000000000000000000000000000000002700090000010000000000000003000200300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................................................18350.33151000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200200000000000000000000000000000000000000010000010000000001112310000000000000000000000000000011240000000
.....................................................................................................................................................................................................ACAGTGGCTGTTCTTTTT.............................................................................................................18347.67143000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003010150800000000000000000000000000000000000000000000000101000000000971400000000000000000000000000000000110000000
..............................................................................................ATAACC----ATGCCGTTT--TTAACCCA.........................................................................................................................................................................................................23147.00470000001000000000000000000000000000000000000000000000000000000000000000000000000002543060000000000000000000004000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000
..........................................................................................................................AAGGGAACTTCTGCTGCTGATAT...................................................................................................................................................................................23139.00390000000010000000000000000000000000000000000000000000000000000000000000000000000008804500000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
...........................................................................................................................AGGGAACTTCTGCTGCTGATATC..................................................................................................................................................................................23138.00380000000000000000000000000000000000000000000000000000000000000000000000000000000002200000000000000000000000010000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032000000000000000000000000000000000000000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA...........................................................................................................24335.00105000010101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000002211310202003000000000000000000000000000000000000000809012040000000001000000301000000000000010000000000000000000
...................................................................................................C----ATGCCGTTT--TTAACCCA.........................................................................................................................................................................................................18130.00300000000000000000000000000000000000000000000000000000000000000000000000000000000001100020000000000000000010002000200700000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................................................21329.67890000000310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020004153002000000000000000000000000000000000000000102000000000000057400000000000000000110000000000010010000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG.............................................................................................................22325.007500001082812500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000204000000000000000000000000000000000000000000000100000000000009400000000000000000000000000000000100000000
...........................................................................................................................AGGGAACTTCTGCTGCTGATATATT................................................................................................................................................................................25120.00200000000000000000000000000000000000000000000000000000000000000000000000000000000001000010000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000
...........................................................................................................................AGGGAACTTCTGCTGCTGA......................................................................................................................................................................................19120.00200000000000000000000000000000000000500000000000000000000000000000000000000000000001000000000000010000000000000000000000000000000000000000000012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
...........................................................................................................................AGGGAACTTCTGCTGCTGATATG..................................................................................................................................................................................23119.0019000000011100000000000000000000000000000000000000000000000000000000000000000000000111040000000000000000000010000100500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
............................................................................................................................GGGAACTTCTGCTGCTGATAT...................................................................................................................................................................................21117.00170000000000000000000000000000000000000000000000000000000000000000000000000000000001401020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTA..............................................................................................................21316.6750000010515131000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000004000000000000000000000000000000001000000000
...........................................................................................................................AGGGAACTTCTGCTGCTGATATT..................................................................................................................................................................................23116.0016000000210000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000002000000100000000000000000000000003200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000
..................................................................................................CC----ATGCCGTTT--TTAACCCA.........................................................................................................................................................................................................19115.0015000000000000000000000000000000000000000000000000000000000000000000000000000000000200160000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000010000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTC..............................................................................................................21313.67410000202427000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000015700000000000000000000000000000000000000000
..........................................................................................................................AAGGGAACTTCTGCTGCTGATA....................................................................................................................................................................................22112.0012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000
................................................................................................................................................................................................ATATCACAGTGGCTGTTCTTTT..............................................................................................................22311.673500000001001000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010006000000000000000000000000000000000000000000000000000000000000014100000000000000000000000000000000100000000
droSim2
GCAT----------------------------------TTTACATCATTATTTAATTTAC----TTTTTTTTTTC----GC---A-CAC---GAATAACC----ATGCCGTTT--TTAACCCCAGGGAACTTCTGCTGCTGATATATTATTGA-----------AA-------------------AACTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAACGATTTGTCATTTGTGG---CACGCATT------TGTG-------------------------TCACCTCAGTGCG--AA-------ASizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................................................223816.00244800797972722282537553601315000
...........................................................................................................................AGGGAACTTCTGCTGCTGATATA..................................................................................................................................................................................231289.002890033000701159703700000
...........................................................................................................................AGGGAACTTCTGCTGCTGATAT...................................................................................................................................................................................221186.00186003210110864402100000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................................................213162.6748810811199451247312154104000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG............................................................................................................23266.0013200851024018751000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................................................19361.3318400212713562641000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................................................20350.671520033123571614952001000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................................................23350.671520001009061000000000
...........................................................................................................................AGGGAACTTCTGCTGCTGATA....................................................................................................................................................................................21149.004900150000116110600000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA...........................................................................................................24343.331300000007852000000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................................................18339.001170000610514001000000
........................................................................................................................................................................................................GTGGCTGTTCTTTTT.............................................................................................................15318.67560000000027281000000
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................................................21318.3355000550000000000000
.................................................................................................................................................................................................TATCACAGTGGCTGT....................................................................................................................15315.00450000000012302010000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA............................................................................................................23313.33400000002119000000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTAAA...........................................................................................................24312.67380000002117000000000
...........................................................................................................................AGGGAACTTCTGCTGCTGAT.....................................................................................................................................................................................2018.00800100000320200000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................................................2237.3322000000128101000000
...........................................................................................................................AGGGAACTTCTGCTGCTGATATAA.................................................................................................................................................................................2417.00700100000320100000
.................................................................................................................................................................................................TATCACAGTGGCTGTT...................................................................................................................1632.67800000010052000000
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................................................2032.67800053000000000000
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTG............................................................................................................2222.50500040001000000000
..................................................................................................................................................TTATTGA-----------AA-------------------AACTCCTA...................................................................................................................................1712.00200000000020000000
...........................................................................................................................AGGGAACTTCTGCTGCTGATATAAA................................................................................................................................................................................2512.00200000000200000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTA..............................................................................................................2131.33400000022000000000
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................................................2031.33400030010000000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGA...........................................................................................................2421.00200000011000000000
...........................................................................................................................AGGGAACTTCTGCTGCTGATATAC.................................................................................................................................................................................2411.00100000000010000000
...........................................................................................................................AGGGAACTTCTGCTGCTGATATATTAT..............................................................................................................................................................................2711.00100000000010000000
................................................................................................AACC----ATGCCGTTT--TTAACCCA.........................................................................................................................................................................................................2111.00100000010000000000
...........................................................................................................................AGGGAACTTCTGCTGCTGATAA...................................................................................................................................................................................2211.00100100000000000000
.............................................................................................................................GGAACTTCTGCTGCTGATATA..................................................................................................................................................................................2111.00100000000100000000
........................................................................................................................................................................................................GTGGCTGTTCTTTTTG............................................................................................................1621.00200000000020000000
...........................................................................................................................AGGGAACTTCTGCTGCTGATATAT.................................................................................................................................................................................2411.00100100000000000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGGC..........................................................................................................2511.00100010000000000000
...........................................................................................................................AGGGAACTTCTGCTGCTGA......................................................................................................................................................................................1911.00100100000000000000
...........................................................................................................................AGGGAACTTCTGCTGCTGG......................................................................................................................................................................................1911.00100100000000000000
..........................................................................................................................CAGGGAACTTCTGCTGCTGATAT...................................................................................................................................................................................2311.00100000000000100000
...........................................................................................................................AGGGAACTTCTGCTGCTGATATATT................................................................................................................................................................................2511.00100000000100000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTC...............................................................................................................2030.67200200000000000000
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTA............................................................................................................2230.67200000002000000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTG..............................................................................................................2130.67200020000000000000
.....................................................................................................................................................................................................ACAGTGGCTGTTCTTTTT.............................................................................................................1830.67200010010000000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC.............................................................................................................2230.67200010010000000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTAAA............................................................................................................2340.50200000011000000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGC...........................................................................................................2420.50100100000000000000
droSec2
GCAT----------------------------------TTTACATCATTATTTAATTTAC----TTT---TTTTT----GC---A-CAC---GAATAACC----ATGCCGTTT--TTAACCCCAGGGAACTTCTGCTGCTGATATATTATTGA-----------AA-------------------AACTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAACGATTTGTCATTTGTGG---CACGCATT------TGTG-------------------------TCACCTCAGTGCG--AA-------ASizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................................................22327140.338142117131478922772
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................................................2138065.33241962271023821138
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG............................................................................................................2323579.5071591011697978
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................................................2031417.004251233419035
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................................................193259.677793075719
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................................................233126.33379203689
.....................................................................................................................................................................................................ACAGTGGCTGTTCTTTTT.............................................................................................................183112.00336003342
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................................................21392.0027614701281
...........................................................................................................................AGGGAACTTCTGCTGCTGATATA..................................................................................................................................................................................23172.007220700
...........................................................................................................................AGGGAACTTCTGCTGCTGATAT...................................................................................................................................................................................22171.007120681
.................................................................................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................................................18367.33202101965
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGA...........................................................................................................24254.50109101080
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................................................22332.339720941
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC.............................................................................................................22329.008710851
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTG............................................................................................................22222.5045160290
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................................................20319.6759100481
.....................................................................................................................................................................................................ACAGTGGCTGTTCTTTTTG............................................................................................................19216.503300330
...........................................................................................................................AGGGAACTTCTGCTGCTGATA....................................................................................................................................................................................21116.001600160
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA...........................................................................................................24314.004200411
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................................................20311.3334230110
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC............................................................................................................23311.003310320
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG.............................................................................................................2237.332220200
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGG...........................................................................................................2417.0071060
....................................................................................................................................................................................................CACAGTGGCTGTTCTTTTT.............................................................................................................1936.331920170
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTT..............................................................................................................1935.331620140
...........................................................................................................................AGGGAACTTCTGCTGCTGAT.....................................................................................................................................................................................2015.0050050
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGC...........................................................................................................2425.001000100
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTA..............................................................................................................2134.331300130
................................................................................................AACC----ATGCCGTTT--TTAACCCC.........................................................................................................................................................................................................2114.0040040
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTC..............................................................................................................2133.671100110
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA............................................................................................................2333.331000100
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTGG...........................................................................................................2313.0030030
....................................................................................................................................................................................................CACAGTGGCTGTTCTTTT..............................................................................................................1832.3371060
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTT...............................................................................................................1932.3375020
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTG..............................................................................................................2132.0062040
..............................................................................................ATAACC----ATGCCGTTT--TTAACCCC.........................................................................................................................................................................................................2312.0020020
................................................................................................................................................................................................ATATCACAGTGGCTGTTCTTTT..............................................................................................................2231.0030030
...........................................................................................................................AGGGAACTTCTGCTGCTGATATATT................................................................................................................................................................................2511.0010010
...........................................................................................................................AGGGAACTTCTGCTGCTGATATAT.................................................................................................................................................................................2411.0010010
....................................................................................................................................................................................................CACAGTGGCTGTTCTTTTTG............................................................................................................2021.0021010
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTA............................................................................................................2231.0030030
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTGGT..........................................................................................................2411.0010010
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTA...............................................................................................................2031.0030030
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTC...............................................................................................................2031.0030021
...........................................................................................................................AGGGAACTTCTGCTGCTGATATAG.................................................................................................................................................................................2411.0010010
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTG............................................................................................................2121.0021010
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTAA.............................................................................................................2230.6720020
droYak3
TTTGT---------TG-------------------CTTT--------------------------------TTTT----GC---T-CAC---AAGTAACC----ATACCGTTT--TTAACCGCAGGGAACCTCTGCTGCTGATATATTATTGA-----------GA-------------------AACTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAACGATTTGTCATTTGTGG---CCCGCATT------TTTG-------------------------TCACCTCAGTGCG--AA-------ASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................................................22388528.672655860234265335500120000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................................................21315870.00476100634753810080000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC.............................................................................................................2232566.67770000770000000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................................................2031006.673020015300310010000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTC..............................................................................................................213276.008280082800000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG............................................................................................................232209.004180241600000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC............................................................................................................233165.004950149400000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTC...............................................................................................................203138.334150041500000000
...........................................................................................................................AGGGAACCTCTGCTGCTGATATA..................................................................................................................................................................................231120.001200077430000000
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................................................21392.002760926700000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................................................23390.332710226900000000
...........................................................................................................................AGGGAACCTCTGCTGCTGATAT...................................................................................................................................................................................22171.00710052180100000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................................................19362.001860218400000000
.....................................................................................................................................................................................................ACAGTGGCTGTTCTTTTT.............................................................................................................18347.001410114000000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................................................22331.3394009400000000
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................................................20322.3367006700000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGC...........................................................................................................24221.5043004300000000
....................................................................................................................................................................................................CACAGTGGCTGTTCTTTTT.............................................................................................................19321.0063016200000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTG..............................................................................................................21316.6750005000000000
...........................................................................................................................AGGGAACCTCTGCTGCTGATA....................................................................................................................................................................................21113.001300940000000
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................................................20312.6738023600000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................................................1837.3322012100000000
...........................................................................................................................AGGGAACCTCTGCTGCTGATAC...................................................................................................................................................................................2217.00700700000000
................................................................................................................................................................................................ATATCACAGTGGCTGTTCTTTT..............................................................................................................2235.6717001700000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG.............................................................................................................2235.6717001700000000
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTC.............................................................................................................2134.6714001400000000
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTG............................................................................................................2224.50900900000000
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGG...........................................................................................................2214.00400400000000
.................................................................................................ACC----ATACCGTTT--TTAACCGC.........................................................................................................................................................................................................2014.00400310000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTGC.............................................................................................................2233.00900900000000
....................................................................................................................................................................................................CACAGTGGCTGTTCTTTT..............................................................................................................1832.67800800000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTC................................................................................................................1932.67800800000000
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTT..............................................................................................................1932.33701600000000
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGGTT.........................................................................................................2412.00200200000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTA..............................................................................................................2132.00600600000000
...........................................................................................................................AGGGAACCTCTGCTGCTGAT.....................................................................................................................................................................................2012.00200110000000
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGGT..........................................................................................................2312.00200200000000
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTGG...........................................................................................................2312.00200200000000
..................................................................................................CC----ATACCGTTT--TTAACCGC.........................................................................................................................................................................................................1912.00200200000000
droEre2
ATCAT--TT--TGTTG-------------------CCTT--------------A----------------TTTTG----GT---G-CAC---GAAAACCC----ATACCGTTT--TTAACCCCAGGGAACCTCTGCTGCTGATATATTATTGA------------A-------------------AACTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAGCGATTTGTCATTTGTGG---CACGCATT------TGTG-------------------------TCACCTTGGTGCG--AA-------ASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................................................22310965.6732897490027970056160
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................................................2132527.677583713686301510
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC.............................................................................................................223198.00594958500000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................................................203195.675877550501240
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................................................213131.673953702500000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG............................................................................................................232114.002284518200100
...........................................................................................................................AGGGAACCTCTGCTGCTGATATA..................................................................................................................................................................................23144.00442011013000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTC..............................................................................................................21326.007817700000
...........................................................................................................................AGGGAACCTCTGCTGCTGATAT...................................................................................................................................................................................22125.00257909000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC............................................................................................................23319.005715600000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................................................23318.6756163800020
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................................................20317.3352411100000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTC...............................................................................................................20316.334904801000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................................................19314.3343103001110
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................................................20310.673223900000
...........................................................................................................................AGGGAACCTCTGCTGCTGATA....................................................................................................................................................................................2118.0081205000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGC...........................................................................................................2425.501101100000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................................................2235.331661000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGG...........................................................................................................2413.0033000000
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTG............................................................................................................2222.5052300000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTG..............................................................................................................2132.3374300000
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTT...............................................................................................................1932.0066000000
.................................................................................................CCC----ATACCGTTT--TTAACCCC.........................................................................................................................................................................................................2012.0020200000
....................................................................................................................................................................................................CACAGTGGCTGTTCTTTTT.............................................................................................................1932.0061500000
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGG...........................................................................................................2212.0020200000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGGCA.........................................................................................................2612.0021100000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC...........................................................................................................2431.6750500000
.....................................................................................................................................................................................................ACAGTGGCTGTTCTTTTT.............................................................................................................1831.3340400000
................................................................................................................................................................................................ATATCACAGTGGCTGTTCTTTT..............................................................................................................2231.3341300000
................................................................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT.............................................................................................................2331.3342200000
...........................................................................................................................AGGGAACCTCTGCTGCTGATAC...................................................................................................................................................................................2211.0010100000
.............................................................................................................................GGAACCTCTGCTGCTGATATT..................................................................................................................................................................................2111.0010100000
...........................................................................................................................AGGGAACCTCTGCTGCTGAT.....................................................................................................................................................................................2011.0010001000
............................................................................................................................GGGAACCTCTGCTGCTGATATA..................................................................................................................................................................................2211.0011000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTCC.............................................................................................................2231.0030300000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................................................1831.0032100000
............................................................................................................................GGGAACCTCTGCTGCTGATAT...................................................................................................................................................................................2111.0011000000
..........................................................................................................................CAGGGAACCTCTGCTGCTGATAT...................................................................................................................................................................................2311.0011000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTA..............................................................................................................2131.0030300000
....................................................................................................................................................................................................CACAGTGGCTGTTCTTTT..............................................................................................................1830.6720200000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA...........................................................................................................2430.6722000000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG.............................................................................................................2230.6722000000
...................................................................................................................................................................................................TCACAGTGGCTGTTCTTTT..............................................................................................................1930.6720200000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTACC............................................................................................................2330.6720200000
.................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC............................................................................................................2330.6720200000
..................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTG.............................................................................................................2130.6722000000

Generated: 10/20/2015 at 07:44 PM