ID:

dpe-mir-6-2

 Coordinate:

scaffold_2:8906789-8906868 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-30.9 -30.4 -30.3

Flybase annnotation

pre_miRNA [Dper\mir-6-2-RM]; utr3 [utr3_minus_3613]; miRNA [Dper\miR-6-2-RA]

No Repeatable elements found

mature

  1. dpe-mir-6-1  scaffold_2:8906544-8906565 +
  2. dpe-mir-6-3  scaffold_2:8906700-8906721 +
  3. dpe-mir-6-2  scaffold_2:8906841-8906862 +
star

Sense Strand Reads

CAACGATTTGTCATCTCCGCCGCCGCGCATTCACCAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTCAAGTTTCGCACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCAACGATCCAGGACTTCAGTTTCGAAATATAAAAAAAAAGT

*******************************************.((((..((((.((((((((((((((((((.((((((((.....((...)).....)))))))))))))))))))))))))).)))).))))....***************************************** 		Read size # Mismatch Hit Count Total Norm Total M021

embryo

 M042

female body

 V042

embryo

 V111

male body		 V057

head
......................................................................................................TATCACAGTGGCTGTTCTTTTT........................................................ 22 0 3 146.00 438 9 413 0 15 1
......................................................................................................TATCACAGTGGCTGGTCTTTTT........................................................ 22 1 3 135.67 407 406 0 0 1 0
......................................................................................................TATCACAGTGGCTGGTTTTTTT........................................................ 22 2 3 98.00 294 294 0 0 0 0
......................................................................................................TATCACAGTGGCTGGTCTTTT......................................................... 21 1 3 83.67 251 248 0 2 1 0
......................................................................................................TATCACAGTGGCTGGTCTTTTTT....................................................... 23 1 1 34.00 34 34 0 0 0 0
......................................................................................................TATCACAGTGGCTGGTTTTTT......................................................... 21 2 3 25.67 77 77 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTT......................................................... 21 0 3 25.00 75 8 62 0 5 0
......................................................................................................TATCACAGTGGCTGGTTTTTTTT....................................................... 23 2 1 25.00 25 25 0 0 0 0
......................................................................................................TATCACAGTGGCTGGTCTTT.......................................................... 20 1 3 16.67 50 49 0 0 1 0
..........................................................AGGGAACGGTTGCTGCTGATGTA................................................................................................... 23 0 1 15.00 15 4 0 11 0 0
.......................................................................................................ATCACAGTGGCTGTTCTTTTT........................................................ 21 0 3 14.67 44 0 44 0 0 0
......................................................................................................TATCACAGTGGCTGGTGTTTTT........................................................ 22 2 4 8.00 32 32 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTT.......................................................... 20 0 3 5.00 15 6 8 0 1 0
......................................................................................................TATCACAGGGGCTGTTCTTTTT........................................................ 22 1 3 4.67 14 0 14 0 0 0
..........................................................AGGGAACGGTTGCTGCTGATG..................................................................................................... 21 0 1 4.00 4 1 0 2 0 1
......................................................................................................TATCACAGTGGCTGTTCTTTTTT....................................................... 23 0 1 4.00 4 2 2 0 0 0
......................................................................................................TATCACATTGGCTGGTCTTTTT........................................................ 22 2 3 3.67 11 11 0 0 0 0
......................................................................................................TATCACAGTGGCTGGGTTTTTT........................................................ 22 3 4 3.50 14 12 0 1 0 1
..........................................................AGGGAACTGTTGCTGCTGATATA................................................................................................... 23 2 2 3.50 7 7 0 0 0 0
..........................................................AGGGAACGGTTGCTCCTGATGTA................................................................................................... 23 1 1 3.00 3 3 0 0 0 0
.......................................................................................................ATCACAGTGGCTGTTCTTTT......................................................... 20 0 3 3.00 9 0 9 0 0 0
......................................................................................................TATCACAGTGGCTGGGTTTTTTT....................................................... 23 3 1 3.00 3 3 0 0 0 0
......................................................................................................TATCACAGTGACTGTTCTTTTT........................................................ 22 1 3 2.67 8 2 0 5 0 1
......................................................................................................TATCACAGTGGCTGGGCTTTTT........................................................ 22 2 3 2.67 8 8 0 0 0 0
......................................................................................................TATCACAGAGGCTGTTCTTTTT........................................................ 22 1 3 2.67 8 0 8 0 0 0
......................................................................................................TATCACAGTGGCTGGTTTTT.......................................................... 20 2 3 2.67 8 8 0 0 0 0
..........................................................AGGGAACGGTTGCTGCTGATGTAA.................................................................................................. 24 1 1 2.00 2 0 0 2 0 0
......................................................................................................TATCACAGTGGCTGGTCTTTTTTT...................................................... 24 2 2 2.00 4 4 0 0 0 0
..........................................................AGTGAACGGTTGCTGCTGATG..................................................................................................... 21 1 1 2.00 2 2 0 0 0 0
......................................................................................................TATCACAGTGGCTGGTCTT........................................................... 19 1 3 1.67 5 4 0 1 0 0
......................................................................................................TATCACAGTGGCTGTTTTTTTT........................................................ 22 1 3 1.67 5 3 0 0 2 0
......................................................................................................TATCACAGTGGCTGGTGTTTT......................................................... 21 2 4 1.50 6 4 0 1 0 1
......................................................................................................TATCACAGTAGCTGTTCTTTTT........................................................ 22 1 3 1.33 4 0 0 4 0 0
......................................................................................................TATCACAGCGGCTGTTCTTTTT........................................................ 22 1 3 1.33 4 0 4 0 0 0
..........................................................AGGGAACGGTTGCTGCTGCTCTA................................................................................................... 23 2 1 1.00 1 0 0 0 0 1
......................................................................................................TATCACAGCGGCTGTTCTTTT......................................................... 21 1 3 1.00 3 0 3 0 0 0
......................................................................................................TATCACAGTTGCTGTTCTTTTT........................................................ 22 1 3 1.00 3 0 2 1 0 0
..........................................................AGGGCACGGGTGCTGCTGGTGTA................................................................................................... 23 3 1 1.00 1 0 0 1 0 0
......................................................................................................TATCACAGTGGCTGGTATTTTTT....................................................... 23 2 1 1.00 1 1 0 0 0 0
......................................................................................................TATCACAGTGGCTGGTCTTTTTTTTT.................................................... 26 2 1 1.00 1 0 0 1 0 0
......................................................................................................TATCACAGTGGCTGGTATTTTTTC...................................................... 24 3 1 1.00 1 0 0 0 0 1
..........................................................AGGGAACGGTTGCTGCTGATGT.................................................................................................... 22 0 1 1.00 1 0 0 1 0 0
......................................................................................................TATCACAGTGGCTGGTGTTTTTT....................................................... 23 2 1 1.00 1 1 0 0 0 0
..........................................................AGGGAACGGTTGCTGCTGATGTAGT................................................................................................. 25 0 1 1.00 1 0 0 1 0 0
..........................................................AGGGAACGGTTGCTGATGATGTA................................................................................................... 23 1 1 1.00 1 0 0 0 1 0
......................................................................................................TATCACAGTGGCTGTTCTT........................................................... 19 0 3 1.00 3 0 3 0 0 0
..........................................................AGGGAACGGAAGCTGCTGGTGTA................................................................................................... 23 3 1 1.00 1 0 0 1 0 0
......................................................................................................GATCACAGTGGCTGTTCTTTTT........................................................ 22 1 3 1.00 3 0 3 0 0 0
..........................................................AGGGACCGGTTGGTGCTGATGTA................................................................................................... 23 2 1 1.00 1 0 0 1 0 0
......................................................................................................TATCACAGTGGCTGTTCTCTTTT....................................................... 23 1 1 1.00 1 0 1 0 0 0
......................................................................................................TATCACAGGGGCTGTTCTTTT......................................................... 21 1 3 1.00 3 0 3 0 0 0
......................................................................................................TATCACAGGGGCTGTTCTTTTTT....................................................... 23 1 1 1.00 1 0 0 1 0 0
......................................................................................................TATCACAGTGGCTGGGCTTTTTT....................................................... 23 2 1 1.00 1 1 0 0 0 0
......................................................................................................TATCACATTGGCTGTTCTTTTT........................................................ 22 1 3 1.00 3 2 1 0 0 0
......................................................................................................TATCACAGTGGCTGGTCT............................................................ 18 1 3 1.00 3 3 0 0 0 0
.......................................................................................................ATCACAGTGGCTGGTCTTTTTT....................................................... 22 1 1 1.00 1 1 0 0 0 0
......................................................................................................TATCACAGTGGCTGGTTTTTTTTT...................................................... 24 3 3 1.00 3 3 0 0 0 0
......................................................................................................TATCACAGTGGCTGGTGTTCTTTGTTT................................................... 27 3 1 1.00 1 0 0 1 0 0
......................................................................................................TATCACAGTGGCCGTTCTTTTT........................................................ 22 1 3 0.67 2 2 0 0 0 0
.....................................................................................................ATATCACAGTGGCTGGTCTTTT......................................................... 22 1 3 0.67 2 2 0 0 0 0
......................................................................................................TATCACAGTGGCTGGGGTTTTTT....................................................... 23 3 3 0.67 2 0 0 2 0 0
......................................................................................................TATCACAGTGGCTGGTCTTTTTC....................................................... 23 2 3 0.67 2 2 0 0 0 0
......................................................................................................TATCACAGTAGCTGTTCTTTT......................................................... 21 1 3 0.67 2 0 0 1 0 1
......................................................................................................TATCACAGTGCCTGTTCTTTTT........................................................ 22 1 3 0.67 2 0 0 2 0 0
......................................................................................................TATCACAGTGGCTGGTATTTTT........................................................ 22 2 3 0.67 2 2 0 0 0 0
........................................................................................................TCACAGTGGCTGTTCTTTTT........................................................ 20 0 3 0.67 2 0 2 0 0 0
.....................................................................................................CTATCACAGTGGCTGGTCTT........................................................... 20 2 4 0.50 2 2 0 0 0 0
......................................................................................................TATCACAGTGGCTAATCTTTTT........................................................ 22 2 4 0.50 2 0 0 2 0 0
......................................................................................................TATCACAGTGGCTGGTGTTTTTTT...................................................... 24 3 2 0.50 1 0 0 1 0 0
......................................................................................................TATCACAGTGGCTGGTCGTTTTTT...................................................... 24 3 2 0.50 1 0 0 1 0 0
....................................................AAAAGATGGTAACGGTTGC............................................................................................................. 19 2 2 0.50 1 0 1 0 0 0
......................................................................................................TATCACAGTGGCTGGATTTTTTT....................................................... 23 3 2 0.50 1 1 0 0 0 0
......................................................................................................TATCACAGTGCCTGGTCTTT.......................................................... 20 2 3 0.33 1 0 0 0 0 1
.......................................................................................................ATCACAGTGGCTGGTCTTTTT........................................................ 21 1 3 0.33 1 1 0 0 0 0
......................................................................................................TACCACAGTGGCTGGTCTTTTT........................................................ 22 2 3 0.33 1 1 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTC.......................................................... 20 1 3 0.33 1 1 0 0 0 0
.........................................................................................................CACAGTGGCTGTTCTTTTT........................................................ 19 0 3 0.33 1 0 1 0 0 0
......................................................................................................TATCACAGTGGCTTTTCT............................................................ 18 1 3 0.33 1 1 0 0 0 0
......................................................................................................TATCACGGTGGCTGTTCTTTT......................................................... 21 1 3 0.33 1 0 0 1 0 0
......................................................................................................TATCACAGTGGCTTTTCTT........................................................... 19 1 3 0.33 1 1 0 0 0 0
......................................................................................................TATCACAGTGGCTGGTCGTTTT........................................................ 22 2 3 0.33 1 0 0 1 0 0
......................................................................................................TATCACAGGGGCTGTTCTTTTG........................................................ 22 2 3 0.33 1 0 1 0 0 0
.....................................................................................................ATATCACAGTGGCTGTTCTTTT......................................................... 22 0 3 0.33 1 0 1 0 0 0
......................................................................................................TATCACAGTGGCTGGGCTTT.......................................................... 20 2 3 0.33 1 0 0 1 0 0
......................................................................................................TATCACAGAGGCTGTTCTTTT......................................................... 21 1 3 0.33 1 0 1 0 0 0
......................................................................................................TATCACATTGACTGTTCTTTTT........................................................ 22 2 3 0.33 1 1 0 0 0 0
......................................................................................................TACCACAGTGGCTGTTCTTTTT........................................................ 22 1 3 0.33 1 0 1 0 0 0
......................................................................................................CATCACAGTGGTAGTTCTTTT......................................................... 21 3 3 0.33 1 0 0 0 0 1
......................................................................................................TATCACAGTGGCCGTTCTTTT......................................................... 21 1 3 0.33 1 1 0 0 0 0
......................................................................................................TATCACGGTGGCTGGTCTTTTT........................................................ 22 2 3 0.33 1 0 0 1 0 0
......................................................................................................TATCACAGTGGCTGGTATTTT......................................................... 21 2 3 0.33 1 1 0 0 0 0
......................................................................................................TATCGCAGTGGCTGGTCTTTTT........................................................ 22 2 3 0.33 1 1 0 0 0 0
......................................................................................................TATCACAGTGGCTGGTAGTTTT........................................................ 22 3 3 0.33 1 0 0 1 0 0
......................................................................................................TATCACAGTGTCTGTTCTTGCT........................................................ 22 3 3 0.33 1 0 0 1 0 0
......................................................................................................TATCACAGTGGCCGGTCTTTTT........................................................ 22 2 3 0.33 1 0 0 1 0 0
......................................................................................................TATCACGGTGGCTGTTCTTT.......................................................... 20 1 3 0.33 1 0 0 1 0 0
......................................................................................................TATCACAGTGACTGTTCTTTT......................................................... 21 1 3 0.33 1 1 0 0 0 0
......................................................................................................TATCACAGTGGCTTTTCTTTTT........................................................ 22 1 3 0.33 1 1 0 0 0 0
.....................................................................................................ATATCACAGTGGCTGGTTTTTTT........................................................ 23 2 3 0.33 1 1 0 0 0 0
........................................................................................................TCACAGTGGCTGTTCTTTT......................................................... 19 0 3 0.33 1 0 1 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTA........................................................ 22 1 3 0.33 1 0 1 0 0 0
......................................................................................................TATCACAGCGGCTGTTCTTT.......................................................... 20 1 3 0.33 1 0 1 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTTA....................................................... 23 1 3 0.33 1 0 1 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTG........................................................ 22 1 3 0.33 1 0 1 0 0 0
.......................................................................................................ATAACAGTGGCTGTTCTTTTT........................................................ 21 1 3 0.33 1 0 1 0 0 0
......................................................................................................TATCACATTGGCTGTTCTTTT......................................................... 21 1 3 0.33 1 1 0 0 0 0
.......................................................................................................ATCACAGTCGCTGTTCTTTTT........................................................ 21 1 3 0.33 1 0 1 0 0 0
.....................................................................................................ATATCACAGTGGCTGGTTTTTT......................................................... 22 2 3 0.33 1 1 0 0 0 0
......................................................................................................TATCACAGGGGCTGTTCTTT.......................................................... 20 1 3 0.33 1 0 1 0 0 0
......................................................................................................TATCACAGTCGGTGTTCTGTTT........................................................ 22 3 3 0.33 1 0 0 0 0 1
....................................................................................................GTTATCACAGTGGCTGTTCTTTTT........................................................ 24 2 3 0.33 1 0 1 0 0 0
......................................................................................................TATAACAGTGGCTGGCCTTTTT........................................................ 22 3 3 0.33 1 0 0 1 0 0
......................................................................................................TATCACAGTGGCTGAGCTTTTT........................................................ 22 2 4 0.25 1 0 0 0 0 1
......................................................................................................TATCACAGTGGCTGGTGTTT.......................................................... 20 2 4 0.25 1 1 0 0 0 0
......................................................................................................TATCACAGTGGCTGGGCTGTT......................................................... 21 3 4 0.25 1 0 0 1 0 0
......................................................................................................TATCACAGCGGCTGGTCTTTT......................................................... 21 2 4 0.25 1 1 0 0 0 0
......................................................................................................TATCACATTGGCTGTTTTTTTT........................................................ 22 2 4 0.25 1 1 0 0 0 0
......................................................................................................TATCACAGTGGCTGGGTTTTT......................................................... 21 3 8 0.25 2 2 0 0 0 0
......................................................................................................TATCACAGTGGCTGGGATTTTT........................................................ 22 3 4 0.25 1 0 0 1 0 0
......................................................................................................TATCACAGCGGCTGGTCTTT.......................................................... 20 2 4 0.25 1 1 0 0 0 0
......................................................................................................TATCACAGTGGCTGGTGCTTTT........................................................ 22 3 5 0.20 1 0 0 1 0 0
......................................................................................................TATCACAGTGGCTGGTCCT........................................................... 19 2 5 0.20 1 0 0 1 0 0
......................................................................................................TATCATAGTGGCTGGTTTTTTT........................................................ 22 3 5 0.20 1 1 0 0 0 0
........GGTCATGTCCGCCGCGGCGC........................................................................................................................................................ 20 3 6 0.17 1 0 0 0 0 1
......................................................................................................TATCACAGTGGCTGGTGTT........................................................... 19 2 6 0.17 1 0 0 1 0 0
.......................................................ACAAGGGATAGGTTGCTGCT......................................................................................................... 20 3 7 0.14 1 0 0 0 0 1
.....................................................................................................ATATCACAGTCTCAGTTCTTT.......................................................... 21 3 8 0.13 1 0 0 0 0 1
......................................................................................................TAGCACAGTGTGTGTTCTTTTT........................................................ 22 3 8 0.13 1 0 0 0 0 1
......................................................................................................TATCACAGTGGCTGTGCTGTG......................................................... 21 3 8 0.13 1 0 0 0 0 1
......................................................................................................TAGCACTGTGGTTGTTCTTTTT........................................................ 22 3 9 0.11 1 0 0 0 0 1
......................................................................................................TATCACAGTGGCTGGTGGTT.......................................................... 20 3 13 0.08 1 0 0 1 0 0
............................................................................................................CATGGCTGGTCTTTTTTGTT.................................................... 20 3 20 0.05 1 0 0 0 0 1

Anti-sense strand reads

GTTGCTAAACAGTAGAGGCGGCGGCGCGTAAGTGGTTTAACTTTTAACAAGTTTTTCTTCCCTTGCCAACGACGACTACATCAAGTTCAAAGCGTGTTAAATATAGTGTCACCGACAAGAAAAAACAAACGGTTAGCTAGTTGCTAGGTCCTGAAGTCAAAGCTTTATATTTTTTTTTCA

*****************************************.((((..((((.((((((((((((((((((.((((((((.....((...)).....)))))))))))))))))))))))))).)))).))))....******************************************* 		Read size # Mismatch Hit Count Total Norm Total M042

female body
...GCTAAACAGTAGAGGCGGAGGT........................................................................................................................................................... 22 2 1 1.00 1 1
.........................................................................GACTATCTCAAGTTCAAACC....................................................................................... 20 3 4 0.25 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droPer2 scaffold_2:8906739-8906918 + dpe-mir-6-2 Known_mirbase CAACGATTTGTC----------ATCTCCGCCGC--CGCGCATT--------CACC---------------------------------AAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTC-AAGTTT-CGCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGA--T---CAACGATC----------CAGGAC-------------TTCAGTTTCGAAATATAAAAAAAAAGT
dp5 3:12676755-12676933 - dps-mir-6-3 Known_mirbase CAACGATTTGTC----------ATCTCCGCCGC--CGCGCATTCGC-----------------------------------------CAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTC-AAGTTT-TGCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGA--T---CACCGATC----------CAGGAC-------------TTCAGTTTCGAAATATAAAA-AAAAGT
droWil2 scf2_1100000004514:1650951-1651133 - dwi-mir-6-3 Known_mirbase CAACAACTTTATTTTTAGATTTCTCTGTTT-----TACCGTTTTCTT---TCATTT-----------------------------------------TTTGTTTAAAAAGAAGGGAACGGTTGCTGTTGATGTAGTAT-ACCATTTTGTTTAACAATATATCACAGTGGCTGTTCTTTTTTGTTTAACAATCAA--T---CAACAATATAAAATTTCATA------------------TAAAAT-------TTTAGA-CAAAAA
droVir3 scaffold_12875:4112876-4113048 + dvi-mir-6-3 Known_mirbase CAACAATTTGTCAGCCGAA---------AG-----TA-CTTTTATTA---TTAACTAACTTG--TGCAATTTGTTCACTTT--AATGACGCTCGTCAATTGTTTAAAAGGAAGAGAACGTTCGCTGTTGATGTAGT-C-GACCTT-TGTACTC-TTTATATCACAGTGGCTGTTCTTTTTTGTTTAGCAATTTC--T---CAAC------------------------------------------------------------
droMoj3 scaffold_6496:20935944-20936123 - dmo-mir-6-3 Known_mirbase CAACAATTTGTCTGTGAAATAAATCTTGAA------------TAGTG---TTATCTTAAGTA--TGTGATTTGTTCAGTTTCAAATCGTGGCCGTAAATTGCTTAAAGAGAAGAGAACGTTCGCTGTTGATGTAGTCG-AATTCA-TTTAATC-TTTATATCACAGTGGCTGTTCTTTTTTGTTTAACAATTTT--T---CAACG-----------------------------------------------------------
droGri2 scaffold_5621:3488-3632 + dgr-mir-6-5 Known_mirbase AA-TGAGTAATG--TT------ATCAACCG--CTGCATAAATTCAC--------C---------------------------------A--ATGC--TATGTTTAACC-ACAGGGAACTGCTGCTGCTGATATACAAC-CATATT-TATACACGACTATATCACAGTGGCTGTTCTTTTTGGTT-GC--ATCGCCATTTGCAACG---------------------------------------------------------AT
droAna3 scaffold_13266:9732059-9732251 + dan-mir-6-3 Known_mirbase CACCGATTTGTC----------ATTTGTGG-----CACGCATTTGTG---TCACGTTG-GTGGACA---------------------GAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTCGCTGCTGATGTAGTT-----ATT-CGCATCA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGA--T---CTACGTTCC------TGC--GAACCTGCGTTCCGGATACAATATAGGATAC-----------AA
droBip1 scf7180000396427:875004-875164 + CAACAATTTGTC----------ATCTGTGG-----CACGAATTTGTGGCATCACCTTG-GTGG-AC---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTT-----ATT-CGCCTCA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGA--T---CTACGTTC--TGG---------------------------------------------------
droKik1 scf7180000302679:88616-88807 - CAGCGATTTGTC----------ATCAGCGC-----GGCCTCAGTGTA---TCATCTCT-GTT--GG---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTCTTAAATT-CACACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGA--T---CTACGTTCAGTGGTTACCCAGGAC-------------ACGAAATTGAAAATAT----------A
droFic1 scf7180000454039:847315-847501 - CAGCGATTTGTC----------ATCTGCGG-----CACGCATTCGTG---TCTCCTCA-ATG--TG---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTT-GAAATT-CTCACCA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGA--T---CTGCGTTCAGTGGTTTTCCAGGAC-------------ACGAAATAGAA--------------AA
droEle1 scf7180000491201:2013261-2013439 - CAGCGATTTGTC----------ATACAGGG-----AACGGATTTGTG---TCACCTCA-ATT--TG---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCCGATGATGTAGTTT-GAAATT-CTCACCA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGA--T---CTACGTTCAGAGGTTTT-----------------------------AAAATA------AATAGC
droRho1 scf7180000780066:74310-74499 + CAGCGATTTGTC----------ATCCAGGA-----AACGCATTTGTG---TCACCTCA-ATT--TG---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACCGTTGCTGATGATGTAGTTT-GAAATT-CTCACCA-TTTATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGA--T---CTACGTTCAGTGGTTTTTCAGGAC-------------ACGAAATTGAAAAT-----------AT
droBia1 scf7180000302143:3059126-3059280 - CAACGATTTGTC----------ATCTGTGG-----CACGCATTTGTG---TCACCTCA-GTG--CG---------------------AAAATTGAAAATTGTCCAAAAAGAAGGGAACGGTTGCTGGTGATGTAGTTC-GAAACT-CTCACAG-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGA--T---CTACG-----------------------------------------------------------
droTak1 scf7180000415384:84690-84883 + CAACGATTTGTC----------ATCTGTGG-----CATGCATTTGTG---TCAACTGA-ATG--TGAAAACT--------------GAAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTAC-GAAACT-CTCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGA--T---CTACGTTTGCTGATTTTCCAGGAC-------------ATGAAATAGAA--------------AT
droEug1 scf7180000409474:2397488-2397677 + CATCGATTTGTC----------ATCTGTGG-----CATGCATTTGTG---TCACCTCA-ATG--TG---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACCGTTGCTGATGGTGTAGTTC-AAAATT-CTCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGA--T---CTACGTTCAATGGTTTACCAGGAC-------------ATGAAATTGAAAAC-----------AT
dm3 chr2R:15548175-15548361 - dme-mir-6-3 Known_mirbase CAACGATTTGTC----------ATTTGTGG-----CACGCATTTGTG---TCACCTCA-GTG--CG---------------------AAAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTT-GAAACT-CTCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGA--T---CTACGTTCAGTGGTTTGCCAGGAC-------------ATGAAACAGAA--------------AT
droSim2 2r:16195447-16195633 - dsi-mir-6-3 Known_mirbase CAACGATTTGTC----------ATTTGTGG-----CACGCATTTGTG---TCACCTCA-GTG--CG---------------------AAAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAAACT-CTCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGA--T---CTACGTTCAGTGGTTTGCCAGGAC-------------ATGAAACAGAA--------------AT
droSec2 scaffold_1:13062908-13063094 - dse-mir-6-3 Known_mirbase CAACGATTTGTC----------ATTTGTGG-----CACGCATTTGTG---TCACCTCA-GTG--CG---------------------AAAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAAACT-CTCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGA--T---CTACGTTCAGTGGTTTGCCAGGAC-------------ATGAAACAGAA--------------AT
droYak3 2R:13624428-13624614 + dya-mir-6-3 Known_mirbase CAACGATTTGTC----------ATTTGTGG-----CCCGCATTTTTG---TCACCTCA-GTG--CG---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAAACT-CTCTCAA-TTTATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGA--T---CTACATTCAGTGGTGTGCCAGGAC-------------ATGAAATAGAA--------------AT
droEre2 scaffold_4845:9748429-9748615 - der-mir-6-3 Known_mirbase CAGCGATTTGTC----------ATTTGTGG-----CACGCATTTGTG---TCACCTTG-GTG--CG---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTGGCTGATGATGTAGTTC-GAAACT-CTCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGA--T---CTGCGTTCAGTGGTTTGCCAGTAC-------------ATGAAATAGAA--------------AT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
CAACGATTTGTC----------ATCTCCGCCGC--CGCGCATT--------CACC---------------------------------AAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTC-AAGTTT-CGCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGA--T---CAACGATC----------CAGGAC-------------TTCAGTTTCGAAATATAAAAAAAAAGTSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTT....................................................................................223146.00438941300115
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTT.....................................................................................21325.00758620005
...............................................................................................................AGGGAACGGTTGCTGCTGATGTA..................................................................................................................................23115.00154011000
...............................................................................................................................................................ATCACAGTGGCTGTTCTTTTT....................................................................................21314.67440440000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTT......................................................................................2035.0015680001
...............................................................................................................AGGGAACGGTTGCTGCTGATG....................................................................................................................................2114.004102010
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT...................................................................................2314.004220000
...............................................................................................................................................................ATCACAGTGGCTGTTCTTTT.....................................................................................2033.009090000
...............................................................................................................AGGGAACGGTTGCTGCTGATGTAA.................................................................................................................................2412.002002000
...............................................................................................................AGGGAACGGTTGCTGCTGATGT...................................................................................................................................2211.001001000
...............................................................................................................AGGGAACGGTTGCTGCTGATGTAGT................................................................................................................................2511.001001000
..............................................................................................................................................................TATCACAGTGGCTGTTCTT.......................................................................................1931.003030000
................................................................................................................................................................TCACAGTGGCTGTTCTTTTT....................................................................................2030.672020000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTC......................................................................................2030.331100000
.................................................................................................................................................................CACAGTGGCTGTTCTTTTT....................................................................................1930.331010000
.............................................................................................................................................................ATATCACAGTGGCTGTTCTTTT.....................................................................................2230.331010000
................................................................................................................................................................TCACAGTGGCTGTTCTTTT.....................................................................................1930.331010000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTA....................................................................................2230.331010000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA...................................................................................2330.331010000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTG....................................................................................2230.331010000
dp5
CAACGATTTGTC----------ATCTCCGCCGC--CGCGCATTCGC-----------------------------------------CAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTC-AAGTTT-TGCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGA--T---CACCGATC----------CAGGAC-------------TTCAGTTTCGAAATATAAAA-AAAAGTSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTT....................................................................................22338201.331146040681510770178307000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTT.....................................................................................2136091.0018273012371700029205000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT...................................................................................2314325.00432505542662002000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTC....................................................................................2231760.0052800452724000000
...............................................................................................................AGGGAACGGTTGCTGCTGATGTA..................................................................................................................................231431.00431015280013500001
..............................................................................................................................................................TATCACAGTGGCTGTTCTTT......................................................................................203403.001209013410741000000
...............................................................................................................................................................ATCACAGTGGCTGTTCTTTTT....................................................................................213194.005820505770000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTC.....................................................................................213169.33508025060000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC...................................................................................233159.004770124641000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA...................................................................................233100.003000222770001000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTC......................................................................................20362.00186001842000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT..................................................................................24257.50115021121000000
...............................................................................................................................................................ATCACAGTGGCTGTTCTTTT.....................................................................................20340.001200106140000000
.............................................................................................................................................................ATATCACAGTGGCTGTTCTTTT.....................................................................................22330.339107840000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTT.......................................................................................19327.6783024590000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTA....................................................................................22324.677406680000000
...............................................................................................................AGGGAACGGTTGCTGCTGATGT...................................................................................................................................22119.001901120600000
................................................................................................................................................................TCACAGTGGCTGTTCTTTTT....................................................................................20317.0051032190000000
.............................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT....................................................................................23313.674108330000000
...............................................................................................................AGGGAACGGTTGCTGCTGATG....................................................................................................................................21112.00120060600000
...............................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT...................................................................................22112.00120570000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC..................................................................................24310.673206260000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTG....................................................................................22310.333109220000000
...............................................................................................................................................................ATCACAGTGGCTGTTCTTT......................................................................................1938.332502230000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTG.....................................................................................2138.002401230000000
.................................................................................................................................................................CACAGTGGCTGTTCTTTTT....................................................................................1937.6723010130000000
..............................................................................................................................................................TATCACAGTGGCTGTTCT........................................................................................1837.002108130000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC..................................................................................2417.0070070000000
.................................................................................................................................................................CACAGTGGCTGTTCTTTTTTGT.................................................................................2216.0060060000000
.............................................................................................................................................................ATATCACAGTGGCTGTTCTTT......................................................................................2135.331600160000000
..................................................................................................................................................................ACAGTGGCTGTTCTTTTT....................................................................................1835.001503120000000
...............................................................................................................AGGGAACGGTTGCTGCTGATGTAA.................................................................................................................................2414.0040010300000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA..................................................................................2434.001202100000000
...............................................................................................................AGGGAACGGTTGCTGCTGATGTT..................................................................................................................................2314.0040020200000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC...................................................................................2333.0090180000000
...............................................................................................................AGGGAACGGTTGCTGCTGATGTC..................................................................................................................................2313.0030020100000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTGTA................................................................................2612.0020020000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA...................................................................................2332.0060230001000
...............................................................................................................AGGGAACGGTTGCTGCTGATGC...................................................................................................................................2212.0020020000000
...............................................................................................................................................................ATCACAGTGGCTGTTCTTTTC....................................................................................2132.0060150000000
.............................................................................................................................................................ATATCACAGTGGCTGTTCTTTTTT...................................................................................2412.0020020000000
................................................................................................................................................................TCACAGTGGCTGTTCTTTTTTGT.................................................................................2312.0020020000000
...............................................................................................................................................................ATCACAGTGGCTGTTCTT.......................................................................................1831.6750500000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTC.......................................................................................1931.6750050000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTTC.................................................................................2521.5030030000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTCC....................................................................................2231.3340040000000
...............................................................................................................................................................ATCACAGTGGCTGTTCTTTTTC...................................................................................2231.3340310000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCCC.................................................................................2531.3340040000000
droWil2
CAACAACTTTATTTTTAGATTTCTCTGTTT-----TACCGTTTTCTT---TCATTT-----------------------------------------TTTGTTTAAAAAGAAGGGAACGGTTGCTGTTGATGTAGTAT-ACCATTTTGTTTAACAATATATCACAGTGGCTGTTCTTTTTTGTTTAACAATCAA--T---CAACAATATAAAATTTCATA------------------TAAAAT-------TTTAGA-CAAAAASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTT....................................................................................22335155.671054670180701036555
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTT.....................................................................................2138217.002465103441243042
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT...................................................................................2311572.001572026015451
..............................................................................................................................................................TATCACAGTGGCTGTTCTTT......................................................................................2031168.673506059534411
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA...................................................................................2331099.333298010032880
...............................................................................................................AGGGAACGGTTGCTGTTGATGTA..................................................................................................................................231841.008410008410
..............................................................................................................................................................TATCACAGTGGCTGTTCTT.......................................................................................193320.009600609504
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA..................................................................................243217.006510506460
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTA....................................................................................223189.675690405650
..............................................................................................................................................................TATCACAGTGGCTGTTCT........................................................................................183128.333850303820
...............................................................................................................AGGGAACGGTTGCTGTTGATGT...................................................................................................................................22185.0085000850
...............................................................................................................................................................ATCACAGTGGCTGTTCTTTTT....................................................................................21370.3321101430680
...............................................................................................................AGGGAACGGTTGCTGTTGATG....................................................................................................................................21154.0054000540
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAAA.................................................................................25346.001380001380
..................................................................................................................................................................ACAGTGGCTGTTCTTTTT....................................................................................18345.001350101340
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA...................................................................................23341.671250001250
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTC....................................................................................22340.331210101200
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC...................................................................................23332.3397000970
...............................................................................................................AGGGAACGGTTGCTGTTGATGTAA.................................................................................................................................24131.0031000310
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTA..................................................................................24130.0030000300
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTG....................................................................................22318.6756000560
...............................................................................................................................................................ATCACAGTGGCTGTTCTTTT.....................................................................................20316.00480310170
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT..................................................................................24210.5021010200
................................................................................................................................................................TCACAGTGGCTGTTCTTTTT....................................................................................20310.33310120190
.................................................................................................................................................................CACAGTGGCTGTTCTTTTTTGT.................................................................................22110.0010000100
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTA.....................................................................................2139.3328010270
.............................................................................................................................................................ATATCACAGTGGCTGTTCTTTT.....................................................................................2238.6726000260
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTAA.................................................................................2518.00800080
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTAAA..................................................................................2437.3322000220
...............................................................................................................AGGGAACGGTTGCTGTTGA......................................................................................................................................1917.00700070
...............................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT...................................................................................2217.00703040
...............................................................................................................AGGGAACGGTTGCTGTTGATGTAAA................................................................................................................................2516.00600060
.................................................................................................................................................................CACAGTGGCTGTTCTTTTT....................................................................................1936.0018000180
............................................................................................................AGAAGGGAACGGTTGCTGTTGA......................................................................................................................................2215.00500050
.............................................................................................................................................................ATATCACAGTGGCTGTTCTTT......................................................................................2134.6714000140
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTC.....................................................................................2134.3313000130
..............................................................................................................AAGGGAACGGTTGCTGTTGATG....................................................................................................................................2214.00400040
...............................................................................................................AGGGAACGGTTGCTGTTGAT.....................................................................................................................................2014.00400040
..................................................................................................................................................................ACAGTGGCTGTTCTTTTTT...................................................................................1914.00400040
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC..................................................................................2433.6711000110
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTAA....................................................................................2243.2513000130
..............................................................................................................AAGGGAACGGTTGCTGTTGATGTA..................................................................................................................................2413.00300030
................................................................................................................................................................TCACAGTGGCTGTTCTTTTTT...................................................................................2113.00301020
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTG..................................................................................2413.00301020
...............................................................................................................................................................ATCACAGTGGCTGTTCTTT......................................................................................1932.67807010
..................................................................................................................................................................ACAGTGGCTGTTCTTTTTA...................................................................................1932.67800080
............................................................................................................AGAAGGGAACGGTTGCTGTTGAT.....................................................................................................................................2312.00200020
................................................................................................................................................................TCACAGTGGCTGTTCTTTT.....................................................................................1932.00600060
...................................................CATTT-----------------------------------------TTTGTTTAAAAAGA.........................................................................................................................................................1912.00200020
......................................................................................................................................GTAT-ACCATTTTGTTTAACAATA..........................................................................................................2312.00200020
................................................................................................................GGGAACGGTTGCTGTTGATGTA..................................................................................................................................2212.00200020
...............................................................................................................AGGGAACGGTTGCTGTTGATGTG..................................................................................................................................2312.00200020
.................................................................................................................................................................CACAGTGGCTGTTCTTTT.....................................................................................1831.67500050
.............................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT....................................................................................2331.33402020
.............................................................................................................................................................ATATCACAGTGGCTGTTCTT.......................................................................................2031.33400040
................................................................................................................................................................TCACAGTGGCTGTTCTTTTTAA..................................................................................2231.33400040
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTAC.................................................................................2511.00100010
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTGT.................................................................................2511.00100010
...............................................................................................................AGGGAACGGTTGCTGTTGATGTAT.................................................................................................................................2411.00100010
.................................................................................................................................................................CACAGTGGCTGTTCTTTTTTG..................................................................................2111.00100010
...............................................................................................................AGGGAACGGTTGCTGTTGATGTAG.................................................................................................................................2411.00100010
.......................................................................................................................................................AACAATATATCACAGTGGCTGTTCTTTT.....................................................................................2811.00100010
..................................................TCATTT-----------------------------------------TTTGTTTAAAAAGA.........................................................................................................................................................2011.00100010
.................................................................................................................................................................CACAGTGGCTGTTCTTTTTTAA.................................................................................2211.00100010
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC..................................................................................2411.00100010
...............................................................................................................AGGGAACGGTTGCTGTTGATGTT..................................................................................................................................2311.00100010
...............................................................................................................AGGGAACGGTTGCTGTTGATGTGT.................................................................................................................................2411.00100010
...............................................................................................................AGGGAACGGTTGCTGTTGATGC...................................................................................................................................2211.00100010
....................................................................................................................ACGGTTGCTGTTGATGTA..................................................................................................................................1811.00100010
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAAC.................................................................................2531.00300030
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTG.....................................................................................2131.00300030
droVir3
CAACAATTTGTCAGCCGAA---------AG-----TA-CTTTTATTA---TTAACTAACTTG--TGCAATTTGTTCACTTT--AATGACGCTCGTCAATTGTTTAAAAGGAAGAGAACGTTCGCTGTTGATGTAGT-C-GACCTT-TGTACTC-TTTATATCACAGTGGCTGTTCTTTTTTGTTTAGCAATTTC--T---CAAC------------------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTT....................................................................................22334949.671048490030299170000000000000000000000000000000000001433193312825233385284224634757247948683020205523572021149061432062301156613991044884415060934242427422502272
...............................................................................................................AGAGAACGTTCGCTGTTGATGTA..................................................................................................................................23114177.0014177001161000000001212500000000000000010085130602073140069101934372554485419368238212483151470000027027024290220301677245259282338
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTT.....................................................................................2135932.671779800754630000000000000000000000000000000000004141814512435630533860650910478455998076453301979104008216197622010020370688662600610
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT...................................................................................2314063.00406300014990000000000000000000000000000000000000268161105918516791160102701046300025020000042413180000202151591868180
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC...................................................................................2333316.00994800132000000000000000000000000000000000000001271159533527618240242077764140150644411018770020102435340001012146562221
...............................................................................................................AGAGAACGTTCGCTGTTGATG....................................................................................................................................2111078.0010780002800000000020000000000000000002010610000794555949451014779523433280001433601000611551000002722221615
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC..................................................................................243570.00171000045100000000000000000000000000000000000001118204955194976180126759060000392000000625010000715453
..............................................................................................................................................................TATCACAGTGGCTGTTCTTT......................................................................................203518.001554006361000000000000000000000000000000000000135111015161836316666384439000199000000273343000000369284137137
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTC....................................................................................223494.671484000109600000000000000000000000000000000000000041101311918233616281800015100100046900010158906
...............................................................................................................AGAGAACGTTCGCTGTTGATGT...................................................................................................................................221402.004020002400000000212000000000000000000205318180000113219311111212010007400000098570000005119141117
...............................................................................................................AGAGAACGTTCGCTGTTGATGTAA.................................................................................................................................241238.0023800050000000001000000000000000000002034000081612333132502000000000007552000000494181416
..............................................................................................................AAGAGAACGTTCGCTGTTGATGTA..................................................................................................................................241197.00197000200000000010000000000000000001001420000174943310211000100021000003528000000201260
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA...................................................................................233179.3353800164000000000000000000000000000000000000001710221517251013134760002200000014191120000005435251824
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC..................................................................................241130.0013000041000000000000000000000000000000000000000213425611104620002400000012200000001120
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCCC.................................................................................253126.6738000027000000000000000000000000000000000000000851212442949532731190009200000000500100110000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT..................................................................................24268.50137000370000000000000000000000000000000000000004432574946410003000000221600000065625
...............................................................................................................AGAGAACGTTCGCTGTTGATGTAAA-...............................................................................................................................25166.006600010000000000000000000000000000000001000011253202111000000010000012900000062528
...............................................................................................................AGAGAACGTTCGCTGTTGAT.....................................................................................................................................20164.006400000000000000000000000000000000000011000000300051523410001310000020700000024252
...............................................................................................................AGAGAACGTTCGCTGTTGATGTC..................................................................................................................................23158.0058000000000000000000000000000000000000010000318272100110100000120000000000000000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTT.......................................................................................19350.33151001180000000000000000000000000000000000000002221356410994010170010001260000006822110
......................................................................................................................................GT-C-GACCTT-TGTACTC-TTTA..........................................................................................................20145.004500040000000010000000000000000000601431600001110000000000000010000000500000000001
..............................................................................................................AAGAGAACGTTCGCTGTTGATG....................................................................................................................................22142.00420002000000000000000000000000000000100000000750154131320000300000002100000001000
...............................................................................................................AGAGAACGTTCGCTGTTGA......................................................................................................................................19240.5081000000000000010000000000000000000000000000221195342060111000400000001500000041000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTC.....................................................................................21335.3310600098000000000000000000000000000000000000000000000001001000510000000000000000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTCC.................................................................................25132.00320008000000000000000000000000000000000000000001410210212000900000000100000000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA..................................................................................24329.33880001000000000000000000000000000000000000000013244123102000000000052190000011413334
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC...................................................................................23328.3385001440000000000000000000000000000000000000100011120362330001300000000000000021100
..............................................................................................................AAGAGAACGTTCGCTGTTGATGT...................................................................................................................................23127.00270002000000000000000000000000000000001200000320001010100000220000011500000000111
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTA....................................................................................22326.0078000140000000000000000000000000000000000000001103120510120000000000421300000067924
..............................................................................................................................................................TATCACAGTGGCTGTTCT........................................................................................18321.0063000500000000000000000000000000000000000000010000142112200020000001013000000102268
..............................................................................................................................................................TATCACAGTGGCTGTTCTTC......................................................................................20317.005100050000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTG....................................................................................22316.334900080000000000000000000000000000000000000000220220100210006000000013000000210052
...............................................................................................................AGAGAACGTTCGCTGTTGATGTAAA-A-.............................................................................................................................26114.00140000000000000000000000000000000000000000001210000000001000000000001100000023110
...............................................................................................................................................................ATCACAGTGGCTGTTCTTTTT....................................................................................21311.333400321000000000000000000000000000000000000000200001010100000200000000100000020000
...............................................................................................................AGAGAACGTTCGCTGTTGATGC...................................................................................................................................22111.00110007000000001000000000000000000000000000000000000000000000010000010100000000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTA..................................................................................2419.0090000000000000000000000000000000000000000000001000121100000000000011100000000000
...............................................................................................................AGAGAACGTTCGCTGTTGATGTAG.................................................................................................................................2419.0090000000000000100000000000000000000000000000100020100000000000000000210000000010
..............................................................................................................AAGAGAACGTTCGCTGTTGAT.....................................................................................................................................2119.0090000000000000000000000000000000000000000000000110100002000200000000000000000101
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCA..................................................................................2439.00270003000000000000000000000000000000000000000221112032020000500000000000000001110
...............................................................................................................AGAGAACGTTCGCTGTTGATGTT..................................................................................................................................2318.0080000000000000000000000000000000000000000000110000020000000030000000100000000000
...............................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT...................................................................................2218.0080003000000000000000000000000000000000000000010001000000000100000010100000000000
.............................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT....................................................................................2337.67230010000000000000000000000000000000000000010031213121003010100000000100000000100
..................................................................................................................................................................ACAGTGGCTGTTCTTTTT....................................................................................1837.00210006000000000000000000000000000000000000000010000010010000010000011400000031010
...............................................................................................................AGAGAACGTTCGCTGTTGATGTG..................................................................................................................................2317.0070000000000000000000000000000000000000000001320000000000000010000000000000000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTCCC..................................................................................2436.00180008000000000000000000000000000000000000000000200011101000100000000000003000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTG..................................................................................2416.0060001000000000000000000000000000000000000000000002020000000000000000000000001000
..............................................................................................................................................................TATCACAGTGGCTGTTC.........................................................................................1735.67170000000000000000000000000000000000000000000000000010001000000000002400000030222
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA...................................................................................2335.33160002000000000000000000000000000000000000000001000010010000000000031100000102021
............................................................................................................................................................TATATCACAGTGGCTGTTCTTT......................................................................................2225.00100001000000000000000000000000000000000000000110000000100000000000000200000011200
...............................................................................................................AGAGAACGTTCGCTGTTGATGTAT.................................................................................................................................2415.0050000000000000000000000000000000010000000000200000000000000100000000000000010000
..............................................................................................................AAGAGAACGTTCGCTGTTGATGTAA.................................................................................................................................2515.0050000000000000000000000000000000000000000000100000000000000000000000200000001001
................................................................................................................................................................TCACAGTGGCTGTTCTTTTT....................................................................................2035.00150007000000000000000000000000000000000000000010100000000000000000000100000011102
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTCCC................................................................................2624.5090002000000000000000000000000000000000000000100000002000000400000000000000000000
...............................................................................................................AGAGAACGTTCGCTGTTGATC....................................................................................................................................2124.5090001000000000000000000000000000000000000000110010100100000210000000000000000000
.............................................................................................................GAAGAGAACGTTCGCTGTTGATG....................................................................................................................................2314.0040000000000000000000000000000000000000000000100000100010000000000000000000000010
..................................................................................................................GAACGTTCGCTGTTGATGTA..................................................................................................................................2014.0040000000000000000000000000000000000001000000200000000000000000000000000000010000
....................................................................................................................ACGTTCGCTGTTGATGTA..................................................................................................................................1814.0040000000000000000000000000000000000000000000210000000000000000000000100000000000
...............................................................................................................AGAGAACGTTCGCTGTTGATGA...................................................................................................................................2214.0040000000000000000000000000000000000000000000120000000000000010000000000000000000
.................................................................................................................AGAACGTTCGCTGTTGATGTA..................................................................................................................................2114.0040001000000000100000000000000000000001000000000000000000000000000000100000000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTAAA..................................................................................2434.00120000000000000000000000000000000000000000000000000000000000000000033000000110121
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAC..................................................................................2433.67110000000000000000000000000000000000000000000031100012001000200000000000000000000
...............................................................................................................................................................ATCACAGTGGCTGTTCTTTT.....................................................................................2033.0090005000000000000000000000000000000000000000010000000000000100000000000000001001
..........................................................................................CTCGTCAATTGTTTAAAAGGA.........................................................................................................................................................2113.0030000000000000000000000000000000000000000000100000000000000000000000100000001000
droMoj3
CAACAATTTGTCTGTGAAATAAATCTTGAA------------TAGTG---TTATCTTAAGTA--TGTGATTTGTTCAGTTTCAAATCGTGGCCGTAAATTGCTTAAAGAGAAGAGAACGTTCGCTGTTGATGTAGTCG-AATTCA-TTTAATC-TTTATATCACAGTGGCTGTTCTTTTTTGTTTAACAATTTT--T---CAACG-----------------------------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTT....................................................................................223175659.67526979301005269462
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTT.....................................................................................21371420.67214262141002142425
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT...................................................................................23120128.00201280000201271
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC...................................................................................2339565.33286966000286900
..............................................................................................................................................................TATCACAGTGGCTGTTCTTT......................................................................................2035461.67163853000163802
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTC....................................................................................2234979.00149371000149360
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTC.....................................................................................2131153.673461000034610
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC..................................................................................243749.332248000022480
..............................................................................................................................................................TATCACAGTGGCTGTTCTTC......................................................................................203612.001836000018360
...............................................................................................................AGAGAACGTTCGCTGTTGATGT...................................................................................................................................221586.005860204003820
...............................................................................................................AGAGAACGTTCGCTGTTGATGTA..................................................................................................................................231565.005651146004180
...............................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT...................................................................................221463.0046300004630
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC..................................................................................241402.0040200004020
...............................................................................................................................................................ATCACAGTGGCTGTTCTTTTT....................................................................................213393.671181200011790
..............................................................................................................................................................TATCACAGTGGCTGTTCTT.......................................................................................193276.6783001008281
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA...................................................................................233230.3369100006910
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT..................................................................................242181.5036320003610
...............................................................................................................AGAGAACGTTCGCTGTTGATG....................................................................................................................................211171.00171064001070
...............................................................................................................................................................ATCACAGTGGCTGTTCTTTT.....................................................................................203132.3339710003960
...............................................................................................................AGAGAACGTTCGCTGTTGATGC...................................................................................................................................221129.0012900001290
..............................................................................................................AAGAGAACGTTCGCTGTTGATGT...................................................................................................................................231116.0011604500710
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTA....................................................................................22389.6726900002690
................................................................................................................................................................TCACAGTGGCTGTTCTTTTT....................................................................................20389.6726900002690
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTCC.................................................................................25170.00700000700
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC...................................................................................23368.6720600002060
.................................................................................................................................................................CACAGTGGCTGTTCTTTTT....................................................................................19365.3319600001960
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCCC.................................................................................25353.6716100001610
..................................................................................................................................................................ACAGTGGCTGTTCTTTTT....................................................................................18347.6714300001430
..............................................................................................................AAGAGAACGTTCGCTGTTGATG....................................................................................................................................22147.004701900280
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTG.....................................................................................21346.6714000001400
................................................................................................................................................................TCACAGTGGCTGTTCTTTT.....................................................................................19331.33940000940
.............................................................................................................................................................ATATCACAGTGGCTGTTCTTT......................................................................................21331.33940000940
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTG....................................................................................22328.67860000860
.................................................................................................................................................................CACAGTGGCTGTTCTTTT.....................................................................................18328.33850000850
..............................................................................................................................................................TATCACAGTGGCTGTTCT........................................................................................18326.33790000790
...............................................................................................................AGAGAACGTTCGCTGTTGATGTAA.................................................................................................................................24124.00240600180
..............................................................................................................AAGAGAACGTTCGCTGTTGATGC...................................................................................................................................23122.00220000220
...............................................................................................................................................................ATCACAGTGGCTGTTCTTTTTC...................................................................................22316.00480000480
...............................................................................................................AGAGAACGTTCGCTGTTGATGTT..................................................................................................................................23115.0015080070
..............................................................................................................................................................TATCACAGTGGCTGTTCTC.......................................................................................19314.67440000440
................................................................................................................................................................TCACAGTGGCTGTTCTTTTTTG..................................................................................22113.00130000130
.................................................................................................................................................................CACAGTGGCTGTTCTTTTTT...................................................................................20112.00120000120
................................................................................................................................................................TCACAGTGGCTGTTCTTTTTTGT.................................................................................23111.00110000110
...............................................................................................................................................................ATCACAGTGGCTGTTCTTT......................................................................................19311.00330000330
droGri2
AA-TGAGTAATG--TT------ATCAACCG--CTGCATAAATTCAC--------C---------------------------------A--ATGC--TATGTTTAACC-ACAGGGAACTGCTGCTGCTGATATACAAC-CATATT-TATACACGACTATATCACAGTGGCTGTTCTTTTTGGTT-GC--ATCGCCATTTGCAACG---------------------------------------------------------ATSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTT....................................................................................2262.5015105
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTT.....................................................................................2161.831129
..............................................................................................................................................................TATCACAGTGGCTGTTCTTT......................................................................................2060.33202
droAna3
CACCGATTTGTC----------ATTTGTGG-----CACGCATTTGTG---TCACGTTG-GTGGACA---------------------GAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTCGCTGCTGATGTAGTT-----ATT-CGCATCA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGA--T---CTACGTTCC------TGC--GAACCTGCGTTCCGGATACAATATAGGATAC-----------AASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTT....................................................................................22315043.3345130367447520074
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTT.....................................................................................2133049.3391489790392028
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT...................................................................................2312039.002039920300000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTC....................................................................................223462.001386013860000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTT......................................................................................203276.00828267920082
...............................................................................................................AGGGAACGGTCGCTGCTGATGTA..................................................................................................................................23165.006514320001
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTC.....................................................................................21357.6717301720001
..............................................................................................................................................................TATCACAGTGGCTGTTCTTC......................................................................................20337.0011101110000
...............................................................................................................................................................ATCACAGTGGCTGTTCTTTTT....................................................................................21335.6710740670000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC...................................................................................23334.6710401040000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA...................................................................................23333.671013980000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT..................................................................................24132.00320320000
..............................................................................................................................................................TATCACAGTGGCTGTTCTT.......................................................................................19317.33528390023
...............................................................................................................AGGGAACGGTCGCTGCTGATGT...................................................................................................................................22110.0010091000
...............................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT...................................................................................2219.009450000
.................................................................................................................................................................CACAGTGGCTGTTCTTTTT....................................................................................1938.67260260000
................................................................................................................................................................TCACAGTGGCTGTTCTTTTT....................................................................................2038.00245190000
...............................................................................................................AGGGAACGGTCGCTGCTGATGC...................................................................................................................................2217.007070000
..................................................................................................................................................................ACAGTGGCTGTTCTTTTT....................................................................................1836.00180180000
..............................................................................................................................................................TATCACAGTGGCTGTTCT........................................................................................1836.00180180000
...............................................................................................................................................................ATCACAGTGGCTGTTCTTTT.....................................................................................2036.00187110000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTA....................................................................................2235.33160150001
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTG.....................................................................................2134.33130130000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTG....................................................................................2233.3310190000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA..................................................................................2433.009170010
...............................................................................................................................................................ATCACAGTGGCTGTTCTTT......................................................................................1932.006330000
................................................................................................................................................................TCACAGTGGCTGTTCTTTT.....................................................................................1931.675050000
.............................................................................................................................................................ATATCACAGTGGCTGTTCTTTT.....................................................................................2231.675050000
...............................................................................................................AGGGAACGGTCGCTGCTGATGTAA.................................................................................................................................2411.001010000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC..................................................................................2421.002020000
...............................................................................................................AGGGAACGGTCGCTGCTGAT.....................................................................................................................................2011.001010000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTG..................................................................................2411.001010000
..............................................................................................................................................................TATCACAGTGGCTGTTCTC.......................................................................................1931.003030000
.................................................................................................................................................................CACAGTGGCTGTTCTTTTTTT..................................................................................2111.001010000
..................................................................................................................................................................ACAGTGGCTGTTCTTTTTT...................................................................................1911.001010000
...............................................................................................................................................................ATCACAGTGGCTGTTCTTTTC....................................................................................2131.003030000
.................................................................................................................................................................CACAGTGGCTGTTCTTTTTT...................................................................................2011.001010000
droBip1
CAACAATTTGTC----------ATCTGTGG-----CACGAATTTGTGGCATCACCTTG-GTGG-AC---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTT-----ATT-CGCCTCA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGA--T---CTACGTTC--TGG---------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CAGCGATTTGTC----------ATCAGCGC-----GGCCTCAGTGTA---TCATCTCT-GTT--GG---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTCTTAAATT-CACACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGA--T---CTACGTTCAGTGGTTACCCAGGAC-------------ACGAAATTGAAAATAT----------ASizeHit CountTotal NormTotal
No Reads
droFic1
CAGCGATTTGTC----------ATCTGCGG-----CACGCATTCGTG---TCTCCTCA-ATG--TG---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTT-GAAATT-CTCACCA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGA--T---CTGCGTTCAGTGGTTTTCCAGGAC-------------ACGAAATAGAA--------------AASizeHit CountTotal NormTotal
No Reads
droEle1
CAGCGATTTGTC----------ATACAGGG-----AACGGATTTGTG---TCACCTCA-ATT--TG---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCCGATGATGTAGTTT-GAAATT-CTCACCA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGA--T---CTACGTTCAGAGGTTTT-----------------------------AAAATA------AATAGCSizeHit CountTotal NormTotal
No Reads
droRho1
CAGCGATTTGTC----------ATCCAGGA-----AACGCATTTGTG---TCACCTCA-ATT--TG---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACCGTTGCTGATGATGTAGTTT-GAAATT-CTCACCA-TTTATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGA--T---CTACGTTCAGTGGTTTTTCAGGAC-------------ACGAAATTGAAAAT-----------ATSizeHit CountTotal NormTotal
No Reads
droBia1
CAACGATTTGTC----------ATCTGTGG-----CACGCATTTGTG---TCACCTCA-GTG--CG---------------------AAAATTGAAAATTGTCCAAAAAGAAGGGAACGGTTGCTGGTGATGTAGTTC-GAAACT-CTCACAG-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGA--T---CTACG-----------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CAACGATTTGTC----------ATCTGTGG-----CATGCATTTGTG---TCAACTGA-ATG--TGAAAACT--------------GAAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTAC-GAAACT-CTCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGA--T---CTACGTTTGCTGATTTTCCAGGAC-------------ATGAAATAGAA--------------ATSizeHit CountTotal NormTotal
No Reads
droEug1
CATCGATTTGTC----------ATCTGTGG-----CATGCATTTGTG---TCACCTCA-ATG--TG---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACCGTTGCTGATGGTGTAGTTC-AAAATT-CTCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGA--T---CTACGTTCAATGGTTTACCAGGAC-------------ATGAAATTGAAAAC-----------ATSizeHit CountTotal NormTotal
No Reads
dm3
CAACGATTTGTC----------ATTTGTGG-----CACGCATTTGTG---TCACCTCA-GTG--CG---------------------AAAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTT-GAAACT-CTCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGA--T---CTACGTTCAGTGGTTTGCCAGGAC-------------ATGAAACAGAA--------------ATSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
...............................................................................................................AGGGAACGGTTGCTGATGATGTA..................................................................................................................................23138897.00388970000303324285800100000000000000000000034501000000000000000000000000000000000000000000007583125013510238892101100040020582660971910041171150047519810900010002000000000000000002811721412901213020000051000000000000120100000000000000000000400000000000000000000120200000000000100000006832010000000010000340113020000000000000100001100012016730901140001001000002032821126632202101190510100
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTT....................................................................................22320801.006240300008135722249235251300000010000000000000000000000000000000000000500000000000000000000000020472170000000000000000000000000110000000000000000000000000000100000000000000000000000010000000000000000000000100000000000000000000000010015459211244212162759343046154161800002000000000000000000000000000000000197080077012300000000637004648179130060059000010003175384212536104243868269366685913240
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT...................................................................................2316947.00694700005072175351212800000000000000000000000000000000000000000000000100000000000000000000000001020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010021647202570854621801290000000000000000000000000000000000000001010100000000001247961920100002000000000000000010001010100000100
...............................................................................................................AGGGAACGGTTGCTGATGATGT...................................................................................................................................2216352.006352000000233921000000000000000000000000362000000000000000000000000000000000000000000000062261479338000010000000000140000458910040127400100000000000000000000036749517271720000200000000000000000001000000000000000000000000000000000010000000000000000000000000000014600000010000000000000000000000000000000000000000002883800800001000000000005000010000000040000000
...............................................................................................................AGGGAACGGTTGCTGATGATG....................................................................................................................................2114948.004948000000231000000000000000000000000039670000000000000000000000000000000000000000000000871012124500000000000100020000204000800800000000000000000000000031207162293000000000000000000000000000000000000000000000000000100000000000000000000000000000000000003300000000000000000000000000000000000000000001001003101000200000000000000001000000000000010000010
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTT.....................................................................................2134534.671360400003046283290234340100000000000000000000000000000000000001000020000000000000000000000000015020000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000010000000000000000110033120213534787185631510020300000000000000000000000000000000000000043028028049000000004601738273180020016000000014114203192122726892863001423102157210
...............................................................................................................AGGGAACGGTTGCTGATGAT.....................................................................................................................................2013286.003286000000020000000000000000000000000029730000000000000000000000000000000000000000000000320041500000000000000000000060005000000000000000000000000000021186000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000201100100000000000000000000000000000000000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTT......................................................................................203778.672336000000415183400000000000000000000000000000000000000000000001000000000000000000000000001410000100000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000300000000000000000000000000116410359327647014400000000000000000000000000000000000000117050705000010004796813404002000000031024081110015011117437113172927090
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT..................................................................................242585.501171000001011412000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000076132109070500300000000000000000000000000000000000000000000000000000007627500000000000000000000000000000000000000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTT.......................................................................................193418.331255000000000000000000000000000000000000000000000000000000001000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000100205110201100080000000000000000000000000000000000000003010310000000003846242015000010000011000100100000002641223295323030
...............................................................................................................AGGGAACGGTTGCTGATGA......................................................................................................................................191212.002120000000000000000000000000000000000102000000000000000000000000000000000000000000000010100130000000000000000000001000300200000000000000000000000001612000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000049200000000000000000000000000000000000000000
..............................................................................................................AAGGGAACGGTTGCTGATGATGTA..................................................................................................................................241193.001930000003100000000000000000000000000000000000000000000000000000000000000000000000001811260000000000000000000016000200100000000000000000000000011117000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000129000000000000000000000000000000000000000000
................................................................................................................GGGAACGGTTGCTGATGATGTA..................................................................................................................................221167.001670000001400000000000000000000000000100000000000000000000000000000000000000000000005840029000000000000000603007220002008000000000000000000000000054000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013000000000000000000000000000000000000000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC...................................................................................233152.334570000000901000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003014002000000000000000000000000000000000000000201010000000000112630600000000000000000000000000000000000000000
...............................................................................................................AGGGAACGGTTGCTGATGATGTAA.................................................................................................................................241134.0013400000023000000000000000000000000002000000000000000000000000000000000000000000000028510270000000000000000000014800020012000000000000000000000000256000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000017000000000000000000000000000000000000000000
...............................................................................................................AGGGAACGGTTGCTGATGATGTC..................................................................................................................................231127.001270000000000000000000000000000000000000000000000000000000000000000000000000000000003102500000000000000020000040000003000000000000000000000000047420000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000090000000000000000000000000000000000000000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTA....................................................................................223125.00375000020241847730000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000140004063004000000000000000000000000000000000000000301040200000000011300000101000000001101000010000101200000010
...............................................................................................................AGGGAACGGTTGCTGATGATGTAG.................................................................................................................................24196.009600000001000000000000000000000000001000000000000000000000000000000000000000000000019903300000000000000050000300000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000049000000000000000000000000000000000000000000
...............................................................................................................AGGGAACGGTTGCTGATGATGTT..................................................................................................................................23186.0086000000330000000000000000000000000000000000000000000000000000000000000000000000000250150000000000000002000028000100200000000000000000000000001120020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000001000000000000000000000016000000000000000000010000000000000000000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA...................................................................................23371.0021300000012894000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000251133034410008000000000000000000000000000000000000000100101001300000000016200000300000000000000000000000001170000000
...............................................................................................................AGGGAACGGTTGCTGATGATGTG..................................................................................................................................23171.007100000061000000000000000000000000000000000000000000000000000000000000000000000000010301300000000000000010000250000017000000000000000000000000023300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000023000000000000000000000000000000000000000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTC....................................................................................22370.332110000001459311310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000130500010000000000000000000000000000000000000001000000000000000571400000000000000000000000000000000110000000
..............................................................................................................AAGGGAACGGTTGCTGATGATGT...................................................................................................................................23164.006400000000000000000000000000000000000000000000000000000000000000000000000000000000040003000000000000000000000000000000000000000000000000000000601900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032000000000000000000000000000000000000000000
...............................................................................................................AGGGAACGGTTGCTGATGATGTAT.................................................................................................................................24151.005100000013000000000000000000000000002000000000000000000000000000000000000000000000011100300000000000000000000000001003000000000000000000000000143600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000010000000
..............................................................................................................................................................TATCACAGTGGCTGTTCT........................................................................................18350.33151000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200200000000000000000000000000000000000000010000010000000001112310000000000000000000000000000011240000000
..................................................................................................................................................................ACAGTGGCTGTTCTTTTT....................................................................................18347.67143000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003010150800000000000000000000000000000000000000000000000101000000000971400000000000000000000000000000000110000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTG..................................................................................24144.004400000006100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000261100000000000000000000000000000000000000000
...............................................................................................................AGGGAACGGTTGCTGATG.......................................................................................................................................18144.00440000000000000000000000000000000000000000000000000000000000000000000000000000000003000100000000000000000000010000002000000000000000000000000785000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000017000000000000000000000000000000000000000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA..................................................................................24335.00105000010101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000002211310202003000000000000000000000000000000000000000809012040000000001000000301000000000000010000000000000000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTA..................................................................................24133.00330000001450000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000020200000000000000000000000000000000000000000
..............................................................................................................AAGGGAACGGTTGCTGATGATG....................................................................................................................................22130.00300000000000000000000000000000000000800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000
...............................................................................................................................................................ATCACAGTGGCTGTTCTTTTT....................................................................................21329.67890000000310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020004153002000000000000000000000000000000000000000102000000000000057400000000000000000110000000000010010000000
................................................................................................................GGGAACGGTTGCTGATGATGT...................................................................................................................................21127.0027000000000000000000000000000000000010000000000000000000000000000000000000000000000800030000000000000000000000000300500000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000
...............................................................................................................AGGGAACGGTTGCTGATGATGTAAA................................................................................................................................25125.0025000000100000000000000000000000000000000000000000000000000000000000000000000000000100040000000000000000000003100000100000000000000000000000002202000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTG....................................................................................22325.007500001082812500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000204000000000000000000000000000000000000000000000100000000000009400000000000000000000000000000000100000000
...............................................................................................................AGGGAACGGTTGCTGATGATGC...................................................................................................................................22122.0022000000100000000000000000000000000000000000000000000000000000000000000000000000000300010000000000001000000001000000000000000000000000000000000511000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC..................................................................................24121.00210000001022000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000014100000000000000000000000000000000000000000
......................................................................................................................................GTTT-GAAACT-CTCACAA-TTTA..........................................................................................................21121.0021000000000000000000000000000000000010000000000000000000000000000000000000000000000700060000000000000000000004000100000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT...................................................................................22121.0021000000040100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000000000000000000000000000000000000000000000000000000009400000000000000000000000000000000000000000
droSim2
CAACGATTTGTC----------ATTTGTGG-----CACGCATTTGTG---TCACCTCA-GTG--CG---------------------AAAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAAACT-CTCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGA--T---CTACGTTCAGTGGTTTGCCAGGAC-------------ATGAAACAGAA--------------ATSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTT....................................................................................223816.00244800797972722282537553601315000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTT.....................................................................................213162.6748810811199451247312154104000
...............................................................................................................AGGGAACGGTTGCTGATGATGTA..................................................................................................................................231137.00137001710092131307624000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT...................................................................................23196.0096007680244100001000
..............................................................................................................................................................TATCACAGTGGCTGTTCTT.......................................................................................19361.3318400212713562641000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTT......................................................................................20350.671520033123571614952001000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA...................................................................................23350.671520001009061000000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA..................................................................................24343.331300000007852000000000
..............................................................................................................................................................TATCACAGTGGCTGTTCT........................................................................................18339.001170000610514001000000
...............................................................................................................AGGGAACGGTTGCTGATGATG....................................................................................................................................21125.0025003000005301301000
...............................................................................................................AGGGAACGGTTGCTGATGATGT...................................................................................................................................22122.0022001100115101200000
.....................................................................................................................................................................GTGGCTGTTCTTTTT....................................................................................15318.67560000000027281000000
...............................................................................................................................................................ATCACAGTGGCTGTTCTTTTT....................................................................................21318.3355000550000000000000
..............................................................................................................................................................TATCACAGTGGCTGT...........................................................................................15315.00450000000012302010000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA...................................................................................23313.33400000002119000000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTAAA..................................................................................24312.67380000002117000000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTA....................................................................................2237.3322000000128101000000
...............................................................................................................AGGGAACGGTTGCTGATGAT.....................................................................................................................................2014.00400200000100100000
...............................................................................................................AGGGAACGGTTGCTGATGATGTAT.................................................................................................................................2413.00300000000300000000
...............................................................................................................................................................ATCACAGTGGCTGTTCTTTT.....................................................................................2032.67800053000000000000
..............................................................................................................................................................TATCACAGTGGCTGTT..........................................................................................1632.67800000010052000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT..................................................................................2422.50500500000000000000
......................................................................................................................................GTTC-GAAACT-CTCACAA-TTTA..........................................................................................................2112.00200100000010000000
...............................................................................................................AGGGAACGGTTGCTGATGATGTAA.................................................................................................................................2412.00200000000000101000
....................................................ACCTCA-GTG--CG---------------------AAAATTG..........................................................................................................................................................................1812.00200200000000000000
..............................................................................................................AAGGGAACGGTTGCTGATGATGTA..................................................................................................................................2412.00200000000000200000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTAA.................................................................................2521.50300000030000000000
................................................................................................................................................................TCACAGTGGCTGTTCTTTTT....................................................................................2031.33400030010000000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTA.....................................................................................2131.33400000022000000000
......................................................................................................................................GTTC-GAAACT-CTCACAA-TT............................................................................................................1911.00100100000000000000
....................................................................................................................................................................................TGTTTGGCAATCGA--T---CTACG...........................................................2011.00100000000010000000
...............................................................................................................AGGGAACGGTTGCTGATGATGTT..................................................................................................................................2311.00100000000000100000
...............................................................................................................AGGGAACGGTTGCTGATGATGTAGT................................................................................................................................2511.00100000000000100000
..............................................................................................................AAGGGAACGGTTGCTGATGATG....................................................................................................................................2211.00100000000010000000
......................................................................................................................................GTTC-GAAACT-CTCACAA-TTT...........................................................................................................2011.00100100000000000000
...............................................................................................................AGGGAACGGTTGCTGATGG......................................................................................................................................1911.00100100000000000000
..............................................................................................................AAGGGAACGGTTGCTGATGAT.....................................................................................................................................2111.00100000000010000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTA..................................................................................2411.00100000001000000000
............................................................................................................AGAAGGGAACGGTTGCTGATGA......................................................................................................................................2211.00100000000000100000
...................................................................................................................AACGGTTGCTGATGATGTA..................................................................................................................................1911.00100000000000100000
............................................................................................................AGAAGGGAACGGTTGCTGATG.......................................................................................................................................2111.00100000000000100000
...............................................................................................................................................................ATCACAGTGGCTGTTCTTTTTA...................................................................................2230.67200000002000000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTG.....................................................................................2130.67200020000000000000
droSec2
CAACGATTTGTC----------ATTTGTGG-----CACGCATTTGTG---TCACCTCA-GTG--CG---------------------AAAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAAACT-CTCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGA--T---CTACGTTCAGTGGTTTGCCAGGAC-------------ATGAAACAGAA--------------ATSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTT....................................................................................22327140.338142117131478922772
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTT.....................................................................................2138065.33241962271023821138
..............................................................................................................................................................TATCACAGTGGCTGTTCTTT......................................................................................2031417.004251233419035
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT...................................................................................231502.00502614941
...............................................................................................................AGGGAACGGTTGCTGATGATGTA..................................................................................................................................231262.002621422424
..............................................................................................................................................................TATCACAGTGGCTGTTCTT.......................................................................................193259.677793075719
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA...................................................................................233126.33379203689
..................................................................................................................................................................ACAGTGGCTGTTCTTTTT....................................................................................183112.00336003342
...............................................................................................................................................................ATCACAGTGGCTGTTCTTTTT....................................................................................21392.0027614701281
..............................................................................................................................................................TATCACAGTGGCTGTTCT........................................................................................18367.33202101965
...............................................................................................................AGGGAACGGTTGCTGATGATGT...................................................................................................................................22135.003500350
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTA....................................................................................22332.339720941
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTC....................................................................................22329.008710851
................................................................................................................................................................TCACAGTGGCTGTTCTTTTT....................................................................................20319.6759100481
...............................................................................................................AGGGAACGGTTGCTGATGATG....................................................................................................................................21115.001500150
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA..................................................................................24314.004200411
...............................................................................................................................................................ATCACAGTGGCTGTTCTTTT.....................................................................................20311.3334230110
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC...................................................................................23311.003310320
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTG....................................................................................2237.332220200
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT..................................................................................2427.001400140
.................................................................................................................................................................CACAGTGGCTGTTCTTTTT....................................................................................1936.331920170
................................................................................................................................................................TCACAGTGGCTGTTCTTTT.....................................................................................1935.331620140
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTA.....................................................................................2134.331300130
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTG..................................................................................2414.0040040
..............................................................................................................AAGGGAACGGTTGCTGATGATGTA..................................................................................................................................2414.0040040
...............................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT...................................................................................2214.0041030
...............................................................................................................AGGGAACGGTTGCTGATGAT.....................................................................................................................................2014.0040130
...............................................................................................................AGGGAACGGTTGCTGATGATGTAA.................................................................................................................................2414.0040040
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTC.....................................................................................2133.671100110
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA...................................................................................2333.331000100
...............................................................................................................AGGGAACGGTTGCTGATGATGTAG.................................................................................................................................2413.0030030
...............................................................................................................................................................ATCACAGTGGCTGTTCTTT......................................................................................1932.3375020
.................................................................................................................................................................CACAGTGGCTGTTCTTTT.....................................................................................1832.3371060
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTA..................................................................................2412.0020020
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTG.....................................................................................2132.0062040
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC..................................................................................2411.0010010
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTGT.................................................................................2511.0010010
..............................................................................................................AAGGGAACGGTTGCTGATGATG....................................................................................................................................2211.0010010
...........................................................................................................................................................TTATATCACAGTGGCTGTTCT........................................................................................2111.0010010
................................................................................................................................................................TCACAGTGGCTGTTCTTTTTTG..................................................................................2211.0010010
..............................................................................................................................................................TATCACAGTGGCTGTTCTTA......................................................................................2031.0030030
..............................................................................................................................................................TATCACAGTGGCTGTTCTTC......................................................................................2031.0030021
.............................................................................................................................................................ATATCACAGTGGCTGTTCTTTT.....................................................................................2231.0030030
...............................................................................................................AGGGAACGGTTGCTGATGATGTAT.................................................................................................................................2411.0010010
...............................................................................................................................................................ATCACAGTGGCTGTTCTTTTTA...................................................................................2231.0030030
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTAAA..................................................................................2430.6720020
droYak3
CAACGATTTGTC----------ATTTGTGG-----CCCGCATTTTTG---TCACCTCA-GTG--CG---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAAACT-CTCTCAA-TTTATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGA--T---CTACATTCAGTGGTGTGCCAGGAC-------------ATGAAATAGAA--------------ATSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTT....................................................................................22388528.672655860234265335500120000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTT.....................................................................................21315870.00476100634753810080000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT...................................................................................23110507.0010507021050500000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTC....................................................................................2232566.67770000770000000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTT......................................................................................2031006.673020015300310010000
...............................................................................................................AGGGAACGGTTGCTGATGATGTA..................................................................................................................................231878.00878007761020000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTC.....................................................................................213276.008280082800000000
...............................................................................................................AGGGAACGGTTGCTGATGATGT...................................................................................................................................221177.0017701159170000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC...................................................................................233165.004950149400000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTC......................................................................................203138.334150041500000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT..................................................................................242104.502090020900000000
...............................................................................................................................................................ATCACAGTGGCTGTTCTTTTT....................................................................................21392.002760926700000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA...................................................................................23390.332710226900000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTT.......................................................................................19362.001860218400000000
...............................................................................................................AGGGAACGGTTGCTGATGATG....................................................................................................................................21149.0049104080000000
..................................................................................................................................................................ACAGTGGCTGTTCTTTTT....................................................................................18347.001410114000000000
...............................................................................................................AGGGAACGGTTGCTGATGATGC...................................................................................................................................22133.0033003300000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTA....................................................................................22331.3394009400000000
................................................................................................................................................................TCACAGTGGCTGTTCTTTTT....................................................................................20322.3367006700000000
............................................................................................................AGAAGGGAACGGTTGCTGATGAT.....................................................................................................................................23122.0022001920100000
.................................................................................................................................................................CACAGTGGCTGTTCTTTTT....................................................................................19321.0063016200000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTG.....................................................................................21316.6750005000000000
..............................................................................................................AAGGGAACGGTTGCTGATGATGT...................................................................................................................................23115.0015001320000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC..................................................................................24113.0013001300000000
...............................................................................................................................................................ATCACAGTGGCTGTTCTTTT.....................................................................................20312.6738023600000000
...............................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT...................................................................................22112.0012011100000000
.................................................................................................................................................................CACAGTGGCTGTTCTTTTTT...................................................................................2019.00900900000000
............................................................................................................AGAAGGGAACGGTTGCTGATGA......................................................................................................................................2219.00900720000000
............................................................................................................AGAAGGGAACGGTTGCTGATG.......................................................................................................................................2119.00900720000000
...............................................................................................................AGGGAACGGTTGCTGATGA......................................................................................................................................1918.00800710000000
..............................................................................................................................................................TATCACAGTGGCTGTTCT........................................................................................1837.3322012100000000
..................................................................................................................................................................ACAGTGGCTGTTCTTTTTT...................................................................................1917.00700700000000
..............................................................................................................AAGGGAACGGTTGCTGATGATGTA..................................................................................................................................2416.00600420000000
.............................................................................................................................................................ATATCACAGTGGCTGTTCTTTT.....................................................................................2235.6717001700000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTG....................................................................................2235.6717001700000000
...............................................................................................................................................................ATCACAGTGGCTGTTCTTTTC....................................................................................2134.6714001400000000
...............................................................................................................AGGGAACGGTTGCTGATGAT.....................................................................................................................................2014.00400400000000
................................................................................................................................................................TCACAGTGGCTGTTCTTTTTT...................................................................................2114.00400400000000
...............................................................................................................AGGGAACGGTTGCTGATGATGTT..................................................................................................................................2314.00400400000000
............................................................................................................AGAAGGGAACGGTTGCTGATGAC.....................................................................................................................................2313.00300300000000
...............................................................................................................................................................ATCACAGTGGCTGTTCTTTTTTT..................................................................................2323.00600600000000
droEre2
CAGCGATTTGTC----------ATTTGTGG-----CACGCATTTGTG---TCACCTTG-GTG--CG---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTGGCTGATGATGTAGTTC-GAAACT-CTCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGA--T---CTGCGTTCAGTGGTTTGCCAGTAC-------------ATGAAATAGAA--------------ATSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTT....................................................................................22310965.6732897490027970056160
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTT.....................................................................................2132527.677583713686301510
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT...................................................................................2311065.00106535103000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTC....................................................................................223198.00594958500000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTT......................................................................................203195.675877550501240
...............................................................................................................................................................ATCACAGTGGCTGTTCTTTTT....................................................................................213131.673953702500000
...............................................................................................................AGGGAACGGTGGCTGATGATGTA..................................................................................................................................23144.004488028000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTC.....................................................................................21326.007817700000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC...................................................................................23319.005715600000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA...................................................................................23318.6756163800020
...............................................................................................................................................................ATCACAGTGGCTGTTCTTTT.....................................................................................20317.3352411100000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTC......................................................................................20316.334904801000
..............................................................................................................................................................TATCACAGTGGCTGTTCTT.......................................................................................19314.3343103001110
...............................................................................................................AGGGAACGGTGGCTGATGATGT...................................................................................................................................22111.00113503000
................................................................................................................................................................TCACAGTGGCTGTTCTTTTT....................................................................................20310.673223900000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT..................................................................................2429.001801701000
...............................................................................................................AGGGAACGGTGGCTGATGATG....................................................................................................................................2116.0061203000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTA....................................................................................2235.331661000000
...............................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT...................................................................................2215.0054100000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTG..................................................................................2414.0042200000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTG.....................................................................................2132.3374300000
.................................................................................................................................................................CACAGTGGCTGTTCTTTTT....................................................................................1932.0061500000
...............................................................................................................................................................ATCACAGTGGCTGTTCTTT......................................................................................1932.0066000000
...............................................................................................................AGGGAACGGTGGCTGATGATGC...................................................................................................................................2212.0020200000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC..................................................................................2431.6750500000
.............................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT....................................................................................2331.3342200000
.............................................................................................................................................................ATATCACAGTGGCTGTTCTTTT.....................................................................................2231.3341300000
..................................................................................................................................................................ACAGTGGCTGTTCTTTTT....................................................................................1831.3340400000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTCC....................................................................................2231.0030300000
................................................................................................................GGGAACGGTGGCTGATGATGTA..................................................................................................................................2211.0011000000
......................................................................................................................................GTTC-GAAACT-CTCACAA-TTTA..........................................................................................................2111.0011000000
.......................................................................................................................................................AA-TTTATATCACAGTGGCTGTTCTTTTT....................................................................................2811.0010100000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTA.....................................................................................2131.0030300000
...............................................................................................................AGGGAACGGTGGCTGATGATGTAT.................................................................................................................................2411.0010100000
..................................................................................................................GAACGGTGGCTGATGATG....................................................................................................................................1811.0010001000
..............................................................................................................................................................TATCACAGTGGCTGTTCT........................................................................................1831.0032100000
.................................................................................................................................................................CACAGTGGCTGTTCTTTTTTGT.................................................................................2211.0010100000
...............................................................................................................AGGGAACGGTGGCTGATGA......................................................................................................................................1911.0010001000
...............................................................................................................AGGGAACGGTGGCTGATGATGTAG.................................................................................................................................2411.0010001000
................................................................................................................GGGAACGGTGGCTGATGATGT...................................................................................................................................2111.0011000000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC..................................................................................2411.0010100000
................................................................................................................................................................TCACAGTGGCTGTTCTTTTTTGT.................................................................................2311.0010100000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC...................................................................................2330.6720200000
..............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA..................................................................................2430.6722000000
................................................................................................................................................................TCACAGTGGCTGTTCTTTT.....................................................................................1930.6720200000

Generated: 10/20/2015 at 07:44 PM