dpe-mir-274

Antisense to intron [Dper\GL16345-in]; utr5 [utr5_plus_7681]; pre_miRNA [Dper\mir-274-RM]; miRNA [Dper\miR-274-RA]

GCATTCCCCTGGGACCTGGCACCTGGGACCTGGCACCTGGGACCTGGTCCCGTGCTGCAGTTTCATTTTGTGACCGACACTAACGGGTAATGGCTGGCCGCAGGACTACTCGTTTTTGCGATCACAATACTGAAATTGCAGCAACGAGCAGCGAAACTGTGGAATGTGTGCAAAACAGTGTGAAAAGTGATCTA *************************************************.(((((((((((((..((((((.((.((..((((((((....(((....)))...))))))))..)))).))))))...)))))))))))))...**********************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V057 head	V050 head	M042 female body	V111 male body	M021 embryo	V042 embryo
..................................................................TTTGTGACCGACACTAACGGGT..........................................................................................................	22	0	1	103647.00	103647	50639	44995	6610	1373	28	2
..................................................................TTTGTGACCGACACTAACGGGTA.........................................................................................................	23	0	1	17238.00	17238	3965	7636	5560	75	1	1
..................................................................TTTGTGACCGACACTAACGGG...........................................................................................................	21	0	1	3448.00	3448	855	1003	1576	6	8	0
..................................................................TTTGTGACCGACACTAACGGGC..........................................................................................................	22	1	1	2054.00	2054	1336	691	16	8	3	0
..................................................................TTTGTGACCGACACTAACGGGTAA........................................................................................................	24	0	1	1587.00	1587	526	985	68	8	0	0
..................................................................TTTGTGACCGACACTAACGGGA..........................................................................................................	22	1	1	1218.00	1218	674	506	22	16	0	0
...................................................................TTGTGACCGACACTAACGGGT..........................................................................................................	21	0	1	924.00	924	188	173	553	9	0	1
..................................................................TTTGTGACCGACACTAACGGGTAT........................................................................................................	24	1	1	920.00	920	409	422	83	6	0	0
..................................................................TTTGTGACCGACACTAACGG............................................................................................................	20	0	1	707.00	707	220	238	245	4	0	0
..................................................................TTTGTGACCGACACTAACG.............................................................................................................	19	0	1	696.00	696	290	307	99	0	0	0
...................................................................TTGTGACCGACACTAACGGGTA.........................................................................................................	22	0	1	539.00	539	17	31	491	0	0	0
..................................................................TTTGTGACCGACACTAACGGGG..........................................................................................................	22	1	1	462.00	462	321	109	28	3	1	0
..................................................................TTTGTGACCGACACTACCGGGT..........................................................................................................	22	1	1	413.00	413	257	155	0	1	0	0
..................................................................TTTGGGACCGACACTAACGGGT..........................................................................................................	22	1	1	403.00	403	371	31	1	0	0	0
..................................................................TTTGTGACCGACACTAACGGGTT.........................................................................................................	23	1	1	329.00	329	123	152	52	2	0	0
..................................................................TTTGTGACAGACACTAACGGGT..........................................................................................................	22	1	1	273.00	273	115	40	118	0	0	0
..................................................................TTTGTGACGGACACTAACGGGT..........................................................................................................	22	1	1	255.00	255	25	6	224	0	0	0
..................................................................TTTGTCACCGACACTAACGGGT..........................................................................................................	22	1	1	252.00	252	85	163	3	1	0	0
..................................................................TTGGTGACCGACACTAACGGGT..........................................................................................................	22	1	1	245.00	245	220	25	0	0	0	0
..................................................................TTTGTGACCGACACTAACAGGT..........................................................................................................	22	1	1	242.00	242	76	160	4	2	0	0
..................................................................TTTGTGACTGACACTAACGGGT..........................................................................................................	22	1	1	240.00	240	113	74	52	1	0	0
..................................................................TTTGTGACCGACACTAACGCGT..........................................................................................................	22	1	1	214.00	214	135	79	0	0	0	0
..................................................................TTTGAGACCGACACTAACGGGT..........................................................................................................	22	1	1	214.00	214	165	48	1	0	0	0
..................................................................TTTGTGACCGACTCTAACGGGT..........................................................................................................	22	1	1	200.00	200	178	21	0	1	0	0
..................................................................TTTGTGACGGACACTAACGGGTA.........................................................................................................	23	1	1	196.00	196	2	1	193	0	0	0
..................................................................TTTGTGACCGACACTCACGGGT..........................................................................................................	22	1	1	186.00	186	118	68	0	0	0	0
..................................................................TGTGTGACCGACACTAACGGGT..........................................................................................................	22	1	1	179.00	179	156	22	1	0	0	0
..................................................................TTTGTGACCGACGCTAACGGGT..........................................................................................................	22	1	1	177.00	177	112	60	3	2	0	0
..................................................................TTTGTGACCGACACTAACGGCT..........................................................................................................	22	1	1	176.00	176	121	54	1	0	0	0
..................................................................TTTGTGACCGGCACTAACGGGT..........................................................................................................	22	1	1	173.00	173	133	37	3	0	0	0
..................................................................TTTGTGACCGACACTAACGGGCA.........................................................................................................	23	1	1	171.00	171	66	93	11	1	0	0
..................................................................CTTGTGACCGACACTAACGGGT..........................................................................................................	22	1	1	166.00	166	114	46	3	3	0	0
..................................................................TTTGTAACCGACACTAACGGGT..........................................................................................................	22	1	1	166.00	166	34	129	2	1	0	0
..................................................................TTTGTGACCGACAATAACGGGT..........................................................................................................	22	1	1	166.00	166	110	54	0	2	0	0
..................................................................TTTGTGACCGACACTAACGTGT..........................................................................................................	22	1	1	164.00	164	114	47	3	0	0	0
..................................................................TTTGTGACCGACACTAACCGGT..........................................................................................................	22	1	1	160.00	160	105	54	0	1	0	0
..................................................................TTTGCGACCGACACTAACGGGT..........................................................................................................	22	1	1	156.00	156	93	60	1	2	0	0
..................................................................TTTGTGACCGACACTAACGGTT..........................................................................................................	22	1	1	144.00	144	112	31	0	1	0	0
..................................................................TTTGTGGCCGACACTAACGGGT..........................................................................................................	22	1	1	141.00	141	76	64	1	0	0	0
..................................................................TTTGTGACCGCCACTAACGGGT..........................................................................................................	22	1	1	138.00	138	92	45	0	1	0	0
..................................................................TTTGTGACCGACACTAACGGGTC.........................................................................................................	23	1	1	128.00	128	79	43	6	0	0	0
..................................................................TTTGTGACCGACCCTAACGGGT..........................................................................................................	22	1	1	122.00	122	85	37	0	0	0	0
...................................................................TTGTGACCGACACTAACGGG...........................................................................................................	20	0	1	120.00	120	1	0	119	0	0	0
..................................................................TTTGTGACAGACACTAACGGGTA.........................................................................................................	23	1	1	119.00	119	8	7	104	0	0	0
..................................................................TTTGTGACCGACACTAACGAGT..........................................................................................................	22	1	1	117.00	117	32	85	0	0	0	0
............................................................................................................CTCGTTTTTGCGATCACAATACT...............................................................	23	0	1	115.00	115	45	21	48	1	0	0
..................................................................TTTGTGACCGACACTAGCGGGT..........................................................................................................	22	1	1	109.00	109	62	45	2	0	0	0
..................................................................TTTGTGACCGACACTAAAGGGT..........................................................................................................	22	1	1	106.00	106	59	46	1	0	0	0
..................................................................TTTGTGACCGACACTGACGGGT..........................................................................................................	22	1	1	106.00	106	72	32	1	1	0	0
..................................................................TTTGTGACCGACACTAACTGGT..........................................................................................................	22	1	1	105.00	105	64	37	3	1	0	0
..................................................................TTTGTGACCAACACTAACGGGT..........................................................................................................	22	1	1	104.00	104	55	48	0	1	0	0
..................................................................TTTGTGAACGACACTAACGGGT..........................................................................................................	22	1	1	101.00	101	67	33	1	0	0	0
.................................................................CTTTGTGACCGACACTAACGGGT..........................................................................................................	23	1	1	101.00	101	52	39	10	0	0	0
..................................................................TTTGTGACCGACACTAACGGT...........................................................................................................	21	1	1	97.00	97	40	36	21	0	0	0
..................................................................TTTGTTACCGACACTAACGGGT..........................................................................................................	22	1	1	95.00	95	38	46	9	2	0	0
..................................................................TTTGTGACCGTCACTAACGGGT..........................................................................................................	22	1	1	95.00	95	80	15	0	0	0	0
..................................................................TTTGTGACCGACACTAACGGGTAC........................................................................................................	24	1	1	92.00	92	24	29	39	0	0	0
..................................................................TTTGTGACCGACACTAATGGGT..........................................................................................................	22	1	1	90.00	90	58	30	2	0	0	0
..................................................................TTTGTGACCGACACTATCGGGT..........................................................................................................	22	1	1	89.00	89	76	12	1	0	0	0
..................................................................TTTGTGATCGACACTAACGGGT..........................................................................................................	22	1	1	85.00	85	52	31	0	2	0	0
..................................................................TTTGTGACCTACACTAACGGGT..........................................................................................................	22	1	1	85.00	85	56	24	5	0	0	0
..................................................................TTTGTGACTGACACTAACGGGTA.........................................................................................................	23	1	1	83.00	83	9	22	51	1	0	0
..................................................................TTTGTGACCGACACTAACGT............................................................................................................	20	1	1	80.00	80	59	19	1	1	0	0
....................................................................TGTGACCGACACTAACGGGT..........................................................................................................	20	0	1	79.00	79	16	27	36	0	0	0
..................................................................GTTGTGACCGACACTAACGGGT..........................................................................................................	22	1	1	79.00	79	43	15	21	0	0	0
..................................................................TTTGTGACCCACACTAACGGGT..........................................................................................................	22	1	1	78.00	78	58	18	2	0	0	0
..................................................................TTTGTGACCGACACTACCGGGC..........................................................................................................	22	2	1	77.00	77	54	23	0	0	0	0
..................................................................TTTGTGACCGATACTAACGGGT..........................................................................................................	22	1	1	76.00	76	44	28	2	2	0	0
..................................................................TTCGTGACCGACACTAACGGGT..........................................................................................................	22	1	1	76.00	76	48	26	2	0	0	0
..................................................................TTTATGACCGACACTAACGGGT..........................................................................................................	22	1	1	75.00	75	35	38	1	1	0	0
..................................................................TTTGTGACCGACACCAACGGGT..........................................................................................................	22	1	1	75.00	75	40	33	0	2	0	0
..................................................................TTTGTGACCGACATTAACGGGT..........................................................................................................	22	1	1	71.00	71	49	22	0	0	0	0
..................................................................TCTGTGACCGACACTAACGGGT..........................................................................................................	22	1	1	69.00	69	40	29	0	0	0	0
..................................................................TTTGTGACGGACACTAACGGG...........................................................................................................	21	1	1	68.00	68	1	0	67	0	0	0
..................................................................TTGGGGACCGACACTAACGGGT..........................................................................................................	22	2	1	66.00	66	61	5	0	0	0	0
..................................................................TTTGTGACCGACACTAACGGGAA.........................................................................................................	23	1	1	66.00	66	16	27	22	1	0	0
..................................................................TTTGTGACCGACACTAACGGAT..........................................................................................................	22	1	1	64.00	64	23	40	1	0	0	0
..................................................................TTTCTGACCGACACTAACGGGT..........................................................................................................	22	1	1	64.00	64	47	15	2	0	0	0
..................................................................TTTGTGAGCGACACTAACGGGT..........................................................................................................	22	1	1	63.00	63	49	13	0	1	0	0
..................................................................TTTGTGACCGACACTAACGGGTTT........................................................................................................	24	2	1	63.00	63	35	24	4	0	0	0
..................................................................TTTGTGACCGACTCTAACGGGC..........................................................................................................	22	2	1	58.00	58	46	12	0	0	0	0
..................................................................TTTGTGACCGACACGAACGGGT..........................................................................................................	22	1	1	56.00	56	51	4	1	0	0	0
..................................................................TTTGTGACCGACACTAACGCGC..........................................................................................................	22	2	1	55.00	55	28	27	0	0	0	0
..................................................................TTTGTGACCGAAACTAACGGGT..........................................................................................................	22	1	1	51.00	51	32	19	0	0	0	0
..................................................................TTTGTGACCGACACTAACGGGGA.........................................................................................................	23	1	1	50.00	50	14	15	20	1	0	0
..................................................................ATTGTGACCGACACTAACGGGT..........................................................................................................	22	1	1	49.00	49	32	11	6	0	0	0
..................................................................TTTGGGACCGACACTAACGGGTA.........................................................................................................	23	1	1	47.00	47	36	11	0	0	0	0
..................................................................TTAGTGACCGACACTAACGGGT..........................................................................................................	22	1	1	47.00	47	38	9	0	0	0	0
..................................................................TTTGGGACCGACACTAACGGGC..........................................................................................................	22	2	1	43.00	43	38	5	0	0	0	0
..................................................................TTTGTGACCGACACTTACGGGT..........................................................................................................	22	1	1	43.00	43	32	9	2	0	0	0
..................................................................TGGGTGACCGACACTAACGGGT..........................................................................................................	22	2	1	41.00	41	31	10	0	0	0	0
..................................................................TTTGCGACCGACACTAACGGGC..........................................................................................................	22	2	1	41.00	41	32	9	0	0	0	0
..................................................................TTTGTGTCCGACACTAACGGGT..........................................................................................................	22	1	1	41.00	41	21	19	0	1	0	0
..................................................................TTTGTGACCGACACTAAGGGGT..........................................................................................................	22	1	1	40.00	40	30	10	0	0	0	0
..................................................................TTTTTGACCGACACTAACGGGT..........................................................................................................	22	1	1	39.00	39	20	14	4	1	0	0
..................................................................TGTGTGACCGACACTAACGGGC..........................................................................................................	22	2	1	39.00	39	29	10	0	0	0	0
..................................................................TTTGTGACCGACACTACCGGGTA.........................................................................................................	23	1	1	38.00	38	22	16	0	0	0	0
..................................................................TTTGTGACAGACACTAACGGGG..........................................................................................................	22	2	1	37.00	37	27	9	1	0	0	0
..................................................................TTTGTGACCGACACTAACGGTC..........................................................................................................	22	2	1	37.00	37	28	9	0	0	0	0
..................................................................TTGGTGACCGACACTAACGGGC..........................................................................................................	22	2	1	35.00	35	26	9	0	0	0	0
....................................................................TGTGACCGACACTAACGGGTA.........................................................................................................	21	0	1	32.00	32	2	1	29	0	0	0
..................................................................TATGTGACCGACACTAACGGGT..........................................................................................................	22	1	1	32.00	32	21	10	1	0	0	0
..................................................................TTTGTGCCCGACACTAACGGGT..........................................................................................................	22	1	1	32.00	32	25	7	0	0	0	0
..................................................................TTTGTGACAGACACTAACGGG...........................................................................................................	21	1	1	30.00	30	5	2	23	0	0	0
.................................................................CTTTGTGACCGACACTAACGGGTA.........................................................................................................	24	1	1	28.00	28	11	6	11	0	0	0
..................................................................TTTGTGACCGACACTACCGCGT..........................................................................................................	22	2	1	28.00	28	21	7	0	0	0	0
..................................................................TTTGAGACCGACACTAACGGGC..........................................................................................................	22	2	1	28.00	28	23	5	0	0	0	0
..................................................................TTTGTGACCGACACTAACGGGTAAA.......................................................................................................	25	1	1	28.00	28	12	13	2	1	0	0
..................................................................TGTGTGACCGACACTAACGGGTA.........................................................................................................	23	1	1	27.00	27	20	6	1	0	0	0
..................................................................TTTGTGACCGACACTAACCGGC..........................................................................................................	22	2	1	27.00	27	17	10	0	0	0	0
..................................................................TTTGTGACCGACACTAACAGGTA.........................................................................................................	23	1	1	27.00	27	7	20	0	0	0	0
..................................................................TTTGTCACCGACACTAACGGGTA.........................................................................................................	23	1	1	27.00	27	2	22	3	0	0	0
..................................................................TGGGTGACCGACTCTAACGGGT..........................................................................................................	22	3	1	27.00	27	24	3	0	0	0	0
..................................................................TTTGAGACCGACACTAACGGGTA.........................................................................................................	23	1	1	26.00	26	16	9	1	0	0	0
..................................................................TTGGTGACCGACAATAACGGGT..........................................................................................................	22	2	1	26.00	26	23	3	0	0	0	0
..................................................................GTTGTGACCGACACTAACGGGTA.........................................................................................................	23	1	1	25.00	25	4	2	19	0	0	0
..................................................................TTTGTGACCGGCACTAACGGGTA.........................................................................................................	23	1	1	25.00	25	10	14	1	0	0	0
..................................................................TTTGACACCGACACTAACGGGT..........................................................................................................	22	2	1	25.00	25	19	6	0	0	0	0
..................................................................TTTGTGACCGACACTAACGCGTA.........................................................................................................	23	1	1	25.00	25	11	12	2	0	0	0
..................................................................TTTGTGACCGACACTAACAAGT..........................................................................................................	22	2	1	25.00	25	6	19	0	0	0	0
..................................................................TTTGGGACCGGCACTAACGGGT..........................................................................................................	22	2	1	25.00	25	25	0	0	0	0	0
............................................................................................................CTCGTTTTTGCGATCACAATAC................................................................	22	0	1	25.00	25	4	1	20	0	0	0
..................................................................TTTGTGACCGACAGTAACGGGT..........................................................................................................	22	1	1	25.00	25	20	5	0	0	0	0
..................................................................TTTGTGACCGACACTAACGCGA..........................................................................................................	22	2	1	24.00	24	12	12	0	0	0	0
..................................................................TTTGAGACCGACACTAACGGGG..........................................................................................................	22	2	1	24.00	24	16	8	0	0	0	0
...................................................................TTGTGACCGACACTAACGG............................................................................................................	19	0	1	23.00	23	0	2	21	0	0	0
..................................................................TTTGTGACCGCCACTAACGGGC..........................................................................................................	22	2	1	23.00	23	16	7	0	0	0	0
..................................................................TGTGTGACCGACTCTAACGGGT..........................................................................................................	22	2	1	22.00	22	20	2	0	0	0	0
..................................................................TTTGTGACCGACACTAAAGGGC..........................................................................................................	22	2	1	21.00	21	13	8	0	0	0	0
..................................................................TTTGTGACCGAGACTAACGGGT..........................................................................................................	22	1	1	21.00	21	16	4	1	0	0	0
..................................................................TTGGTGACCGACACTAACGGGTA.........................................................................................................	23	1	1	21.00	21	15	6	0	0	0	0
..................................................................TTTGTGACCGACACTCACGGGC..........................................................................................................	22	2	1	21.00	21	15	6	0	0	0	0
..................................................................TGGGTGACCGACACTAACGGGC..........................................................................................................	22	3	1	20.00	20	17	3	0	0	0	0
..................................................................TTTGTGACCGACACTACCGGGA..........................................................................................................	22	2	1	20.00	20	15	5	0	0	0	0
..................................................................TTTGTGACCGACACTAACGGGTG.........................................................................................................	23	1	1	20.00	20	6	14	0	0	0	0
..................................................................TTTGTAACCGACACTAACGGGTA.........................................................................................................	23	1	1	20.00	20	4	16	0	0	0	0
..................................................................TGTGGGACCGACACTAACGGGT..........................................................................................................	22	2	1	20.00	20	17	3	0	0	0	0
..................................................................TTTGTGACCGACCCTAACGGGC..........................................................................................................	22	2	1	20.00	20	11	9	0	0	0	0
..................................................................TTTGTGACCGACGCTAACGGGTA.........................................................................................................	23	1	1	20.00	20	11	8	1	0	0	0
..................................................................CTTGTGACCGACACTAACGGGTA.........................................................................................................	23	1	1	20.00	20	9	9	2	0	0	0
..................................................................TTTGTGACCGACACTAACGGCC..........................................................................................................	22	2	1	20.00	20	15	5	0	0	0	0
..................................................................TTTGTGACCGACACTACCGGG...........................................................................................................	21	1	1	20.00	20	9	11	0	0	0	0
..................................................................TTTGTGACCGACACTAGCGGGTA.........................................................................................................	23	1	1	19.00	19	9	10	0	0	0	0
.............................................................................................................TCGTTTTTGCGATCACAATACT...............................................................	22	0	1	19.00	19	4	3	12	0	0	0
..................................................................TTTGTGACCAACACTAACGGGTA.........................................................................................................	23	1	1	19.00	19	8	8	2	1	0	0
..................................................................TTTGTGACCGACACTAACGTGTA.........................................................................................................	23	1	1	19.00	19	5	13	1	0	0	0
..................................................................TTTGTGACCGACAATAACGGGC..........................................................................................................	22	2	1	19.00	19	13	6	0	0	0	0
..................................................................TTTGTGACCGACACTAACGGGCAT........................................................................................................	24	2	1	19.00	19	11	8	0	0	0	0
..................................................................TTTGTGACCGACACTACCGGGG..........................................................................................................	22	2	1	18.00	18	15	3	0	0	0	0
..................................................................TTTGTGACCGACACTACCGGTT..........................................................................................................	22	2	1	18.00	18	13	5	0	0	0	0
..................................................................TTTGTGACCGGCTCTAACGGGT..........................................................................................................	22	2	1	18.00	18	18	0	0	0	0	0
..................................................................TTTGTGACCGACACTAACGGGTATT.......................................................................................................	25	1	1	18.00	18	7	6	5	0	0	0
..................................................................TTTGTGACCGGCACTAACGGGC..........................................................................................................	22	2	1	18.00	18	15	3	0	0	0	0
..................................................................TTTGTGACCCACACTAACGGGC..........................................................................................................	22	2	1	18.00	18	13	5	0	0	0	0
..................................................................TTTGTGACCGACACTAACGGGCAA........................................................................................................	24	1	1	18.00	18	7	11	0	0	0	0
..................................................................TTTGTGACCGTCACTAACGGGC..........................................................................................................	22	2	1	18.00	18	16	2	0	0	0	0
..................................................................TTTGTGACCGACACTAACGCG...........................................................................................................	21	1	1	18.00	18	9	9	0	0	0	0
..................................................................TGTGTGACCGACACTAACGGGG..........................................................................................................	22	2	1	17.00	17	14	3	0	0	0	0
..................................................................TTTGTGACCGACACTAACGGGCT.........................................................................................................	23	2	1	17.00	17	7	10	0	0	0	0
..................................................................TTTGGGACAGACACTAACGGGT..........................................................................................................	22	2	1	17.00	17	16	1	0	0	0	0
..................................................................TTTCTGACCGACACTAACGGGC..........................................................................................................	22	2	1	17.00	17	14	3	0	0	0	0
..................................................................TTTGTGACAGACACTAACGGGC..........................................................................................................	22	2	1	17.00	17	9	6	2	0	0	0
..................................................................TTTGTGACCGACACTAACGGGTAG........................................................................................................	24	1	1	17.00	17	11	4	2	0	0	0
..................................................................TTTGTTACCGACACTAACGGGTA.........................................................................................................	23	1	1	16.00	16	2	10	4	0	0	0
..................................................................TTTGTGACCGACACTAACGGTA..........................................................................................................	22	2	1	16.00	16	10	3	3	0	0	0
..................................................................TTTGTGACTGACACTAACGGG...........................................................................................................	21	1	1	16.00	16	2	2	12	0	0	0
..................................................................TTTGTCACCCACACTAACGGGT..........................................................................................................	22	2	1	16.00	16	13	3	0	0	0	0
..................................................................TTTGTGACCGACACAAACGGGT..........................................................................................................	22	1	1	16.00	16	10	6	0	0	0	0
..................................................................TTTGTGACCGACACTAACGAGTA.........................................................................................................	23	1	1	16.00	16	1	13	2	0	0	0
..................................................................TTTGTGACCGACACTAACGGTTA.........................................................................................................	23	1	1	16.00	16	6	5	5	0	0	0
..................................................................TTTGTGACCTACACTAACGGGC..........................................................................................................	22	2	1	16.00	16	10	6	0	0	0	0
..................................................................TTTGGGACCGACACTAACGGGG..........................................................................................................	22	2	1	16.00	16	16	0	0	0	0	0
..................................................................TTTGCGACCGACACTAACGGGTA.........................................................................................................	23	1	1	16.00	16	5	8	3	0	0	0
..................................................................TTTTTGACCGACACTAACGGGTA.........................................................................................................	23	1	1	16.00	16	2	6	8	0	0	0
..................................................................TTTGTGACCGACACTAACGGTG..........................................................................................................	22	2	1	16.00	16	14	2	0	0	0	0
..................................................................TTGGTGACCGACTCTAACGGGT..........................................................................................................	22	2	1	16.00	16	12	4	0	0	0	0
..................................................................TTTGTGATCGACACTAACGGGTA.........................................................................................................	23	1	1	15.00	15	3	10	2	0	0	0
..................................................................GTTGTGACCGACACTAACGGGC..........................................................................................................	22	2	1	15.00	15	10	5	0	0	0	0
..................................................................TTTGTGAACGACACTAACGGGC..........................................................................................................	22	2	1	15.00	15	13	2	0	0	0	0
..................................................................TTTGTGGCCGACACTAACGGGTA.........................................................................................................	23	1	1	14.00	14	5	6	3	0	0	0
..................................................................TTTGGGACCGACACGAACGGGT..........................................................................................................	22	2	1	14.00	14	14	0	0	0	0	0
..................................................................TTTGTGACCGACTCTATCGGGT..........................................................................................................	22	2	1	14.00	14	12	2	0	0	0	0
..................................................................TTTGTGACCGCCACTAACGGGG..........................................................................................................	22	2	1	14.00	14	10	4	0	0	0	0
..................................................................TTTGTGACTGACACTAACGGGC..........................................................................................................	22	2	1	14.00	14	12	1	1	0	0	0
..................................................................TTTATGACCGACACTAACGGGTA.........................................................................................................	23	1	1	14.00	14	4	9	1	0	0	0
..................................................................TTTGTGACCGACACGAACGGGC..........................................................................................................	22	2	1	14.00	14	10	4	0	0	0	0
..................................................................TTTGTGACCGACACTGACGGGC..........................................................................................................	22	2	1	14.00	14	13	1	0	0	0	0
..................................................................TTTGTCACCGACACTAACGGGC..........................................................................................................	22	2	1	13.00	13	10	3	0	0	0	0
..................................................................TTTGTGACGGACACTAACGGGC..........................................................................................................	22	2	1	13.00	13	8	1	4	0	0	0
..................................................................TTTGAGACCGACTCTAACGGGT..........................................................................................................	22	2	1	13.00	13	11	2	0	0	0	0
..................................................................TTTGTGACCGACACTACCGTGT..........................................................................................................	22	2	1	13.00	13	8	5	0	0	0	0
..................................................................TTGGTGACCGACACTAACGGGG..........................................................................................................	22	2	1	13.00	13	12	1	0	0	0	0
..................................................................TTTGTGACCGCCACTAACGGGTA.........................................................................................................	23	1	1	13.00	13	6	7	0	0	0	0
.................................................................TTTTGTGACCGACACTAACGGGT..........................................................................................................	23	0	1	13.00	13	4	2	7	0	0	0
..................................................................TTTGTGACCGACAATAACGGGA..........................................................................................................	22	2	1	13.00	13	5	8	0	0	0	0
..................................................................TTTGTGACCGTCACTACCGGGT..........................................................................................................	22	2	1	13.00	13	12	1	0	0	0	0
..................................................................TTTGTGACCGACACTAACGCGG..........................................................................................................	22	2	1	13.00	13	9	4	0	0	0	0
..................................................................TTTGTGACCGACACTGACGGGTA.........................................................................................................	23	1	1	13.00	13	6	6	1	0	0	0
..................................................................TTTGTGACCGACACTAACCGGTA.........................................................................................................	23	1	1	13.00	13	7	6	0	0	0	0
....................................................................TGTGACCGACACTAACGGG...........................................................................................................	19	0	1	13.00	13	0	0	13	0	0	0
..................................................................TTTGGGAACGACACTAACGGGT..........................................................................................................	22	2	1	13.00	13	12	1	0	0	0	0
..................................................................TTTGTGACCGACACTCACGGGTA.........................................................................................................	23	1	1	13.00	13	5	8	0	0	0	0
..................................................................TTTGTGACCGACACTAAAGGGTA.........................................................................................................	23	1	1	13.00	13	6	6	0	1	0	0
..................................................................TTTGTGACCGACACTCACGTGT..........................................................................................................	22	2	1	12.00	12	6	6	0	0	0	0
..................................................................TTTGTGACCGACACTAGCGGGG..........................................................................................................	22	2	1	12.00	12	10	2	0	0	0	0
............................................................................................................CTCGTTTTTGCGATCACAATA.................................................................	21	0	1	12.00	12	3	6	3	0	0	0
..................................................................TTTGGGACCGACACTAACGGGA..........................................................................................................	22	2	1	12.00	12	12	0	0	0	0	0
..................................................................TTTGTGACCGCCACTACCGGGT..........................................................................................................	22	2	1	12.00	12	9	3	0	0	0	0
..................................................................TGGGTGACCGACACTAACGGGG..........................................................................................................	22	3	1	12.00	12	10	2	0	0	0	0
..................................................................TTTGTGACCGACACTAACGGGTCT........................................................................................................	24	2	1	12.00	12	6	6	0	0	0	0
..................................................................TTTGGGACCGACACTAACGGG...........................................................................................................	21	1	1	12.00	12	10	1	1	0	0	0
...................................................................TTGTGACCGACACTAACGGGTAA........................................................................................................	23	0	1	12.00	12	3	8	1	0	0	0
..................................................................TTTGTGACCGACTCTAACGGG...........................................................................................................	21	1	1	12.00	12	9	3	0	0	0	0
..................................................................TTTGTGACCGACACGAACGGGG..........................................................................................................	22	2	1	12.00	12	11	1	0	0	0	0
..................................................................TGTGTGAACGACACTAACGGGT..........................................................................................................	22	2	1	12.00	12	11	1	0	0	0	0
..................................................................TTTGTGACCGTCACTAACGGGTA.........................................................................................................	23	1	1	12.00	12	10	1	1	0	0	0
..................................................................TTGGTGACCGACACTAACGGCT..........................................................................................................	22	2	1	12.00	12	11	1	0	0	0	0
..................................................................TTTGTGACCGACACTAACCGCT..........................................................................................................	22	2	1	12.00	12	7	5	0	0	0	0
..................................................................TTTGTGACCGACACTAAAGGGA..........................................................................................................	22	2	1	11.00	11	1	10	0	0	0	0
..................................................................TTTGAGACCCACACTAACGGGT..........................................................................................................	22	2	1	11.00	11	8	3	0	0	0	0
..................................................................TTTGTGACCGACACTAACCTGT..........................................................................................................	22	2	1	11.00	11	8	3	0	0	0	0
.....................................................................GTGACCGACACTAACGGGT..........................................................................................................	19	0	1	11.00	11	2	2	7	0	0	0
..................................................................TTTGTGACCGACACTTACGGGG..........................................................................................................	22	2	1	11.00	11	9	2	0	0	0	0
..................................................................TTTGTGACCGACCCTAACCGGT..........................................................................................................	22	2	1	11.00	11	7	4	0	0	0	0
..................................................................TTTGTGACCGACTCTAACGGTT..........................................................................................................	22	2	1	11.00	11	9	2	0	0	0	0
..................................................................TTTGGGACCGACACTAACCGGT..........................................................................................................	22	2	1	11.00	11	9	2	0	0	0	0
..................................................................ATTGTGACCGACACTAACGGGTA.........................................................................................................	23	1	1	11.00	11	3	3	5	0	0	0
..................................................................TTTGTGACCGACACTAACGTGC..........................................................................................................	22	2	1	11.00	11	9	2	0	0	0	0
..................................................................TTGGTGACCGACTCTAACGGGC..........................................................................................................	22	3	1	11.00	11	8	3	0	0	0	0
..................................................................TTTGTGACCGACACTAACTGGTA.........................................................................................................	23	1	1	11.00	11	3	8	0	0	0	0
..................................................................TTTGTGACAGACACTAACGGCT..........................................................................................................	22	2	1	11.00	11	8	3	0	0	0	0
..................................................................TTTGCGACCGACTCTAACGGGC..........................................................................................................	22	3	1	11.00	11	6	5	0	0	0	0
..................................................................TGTGTGACAGACACTAACGGGT..........................................................................................................	22	2	1	11.00	11	11	0	0	0	0	0
..................................................................TTTGTGACCGACACTACCGGCT..........................................................................................................	22	2	1	11.00	11	9	2	0	0	0	0
..................................................................TTTGACACCCACACTAACGGGT..........................................................................................................	22	3	1	11.00	11	10	1	0	0	0	0
..................................................................TTTGTGACCTACACTAACGGGTA.........................................................................................................	23	1	1	11.00	11	3	5	3	0	0	0
..................................................................TTTGTGACCGACACCAACGGGTA.........................................................................................................	23	1	1	10.00	10	4	5	1	0	0	0
..................................................................TATGAGACCGACACTAACGGGT..........................................................................................................	22	2	1	10.00	10	10	0	0	0	0	0
..................................................................TTTGTGACCGCCACTAACGGGA..........................................................................................................	22	2	1	10.00	10	7	3	0	0	0	0
..................................................................TTTGTGACCGACCCTCACGGGT..........................................................................................................	22	2	1	10.00	10	6	4	0	0	0	0
..................................................................CTTGTGACCGACACTAACGGGC..........................................................................................................	22	2	1	10.00	10	9	1	0	0	0	0
..................................................................TGGGTGACCGACTCTAACGGG...........................................................................................................	21	3	1	10.00	10	8	2	0	0	0	0
..................................................................TTTGTGACCGACACTAAC..............................................................................................................	18	0	1	10.00	10	5	2	3	0	0	0
..................................................................TGTGAGACCGACACTAACGGGT..........................................................................................................	22	2	1	10.00	10	9	1	0	0	0	0
...................................................................TTGTGACCTACACTAACGGGT..........................................................................................................	21	1	1	10.00	10	0	0	10	0	0	0
..................................................................TTTGTCACCGACACTAACCGGT..........................................................................................................	22	2	1	10.00	10	7	3	0	0	0	0
..................................................................TTTGTGACCGACTCTAACGGGG..........................................................................................................	22	2	1	10.00	10	7	3	0	0	0	0
..................................................................ATTGTGACCGACACTAACGGGC..........................................................................................................	22	2	1	10.00	10	9	1	0	0	0	0
..................................................................TTTGAGACCGACGCTAACGGGT..........................................................................................................	22	2	1	10.00	10	8	2	0	0	0	0
..................................................................TTGGTGACCGTCACTAACGGGT..........................................................................................................	22	2	1	10.00	10	7	3	0	0	0	0
..................................................................TTTGGGACCGACACTAACGGCT..........................................................................................................	22	2	1	10.00	10	9	1	0	0	0	0
..................................................................TTTGTGACCGACACTAACAGG...........................................................................................................	21	1	1	9.00	9	1	5	3	0	0	0
..................................................................TTTGTCACCGACACTAACAGGT..........................................................................................................	22	2	1	9.00	9	7	2	0	0	0	0
..................................................................TTAGTGACCGACACTAACGGGC..........................................................................................................	22	2	1	9.00	9	8	1	0	0	0	0
..................................................................TTTGTGACCGACCCTAACGGGTA.........................................................................................................	23	1	1	9.00	9	4	4	1	0	0	0
..................................................................TTTGTGACCGCCACTCACGGGT..........................................................................................................	22	2	1	9.00	9	6	3	0	0	0	0
..................................................................TTTGTGACCGACTCTCACGGGT..........................................................................................................	22	2	1	9.00	9	8	1	0	0	0	0
..................................................................TTTGAGACCGACACTAACGGGTC.........................................................................................................	23	2	1	9.00	9	9	0	0	0	0	0
..................................................................TTTGTCACCGACACTAACGGG...........................................................................................................	21	1	1	9.00	9	3	6	0	0	0	0
...................................................................TTGTGACCGACACTAACGGGTAT........................................................................................................	23	1	1	9.00	9	3	0	6	0	0	0
..................................................................TTTGTGACCGACACTAACTGG...........................................................................................................	21	1	1	9.00	9	5	3	1	0	0	0
..................................................................TTTCAGACCGACACTAACGGGT..........................................................................................................	22	2	1	9.00	9	6	3	0	0	0	0
..................................................................TTTGTGACCGAAACTAACGGGC..........................................................................................................	22	2	1	9.00	9	7	2	0	0	0	0
..................................................................TTTGTGACCGACCCTACCGGGT..........................................................................................................	22	2	1	9.00	9	6	3	0	0	0	0
..................................................................TTTGAGACCGACACTAACAGGT..........................................................................................................	22	2	1	9.00	9	8	1	0	0	0	0
..................................................................TTTGTGACCGACGCTAACGGGC..........................................................................................................	22	2	1	9.00	9	7	2	0	0	0	0
..................................................................TTTGGGACCGACGCTAACGGGT..........................................................................................................	22	2	1	9.00	9	9	0	0	0	0	0
..................................................................TTTGTGCCCGACACTAACGGGC..........................................................................................................	22	2	1	9.00	9	9	0	0	0	0	0
..................................................................TTTGTGACCGGCACTCACGGGT..........................................................................................................	22	2	1	9.00	9	8	1	0	0	0	0
..................................................................TTTGTGACCGACAATAACGGGG..........................................................................................................	22	2	1	9.00	9	4	5	0	0	0	0
...................................................................TTGTGACCAACACTAACGGGTA.........................................................................................................	22	1	1	9.00	9	0	0	9	0	0	0
..................................................................TTTGTGACCGACACTAACGGGTAAT.......................................................................................................	25	0	1	9.00	9	3	6	0	0	0	0
..................................................................TTTGGGACCGACACTAGCGGGT..........................................................................................................	22	2	1	9.00	9	9	0	0	0	0	0
..................................................................TTTGGCACCGACACTAACGGGT..........................................................................................................	22	2	1	9.00	9	8	1	0	0	0	0
..................................................................TTGGTGACCGGCACTAACGGGT..........................................................................................................	22	2	1	9.00	9	8	1	0	0	0	0
..................................................................TGTGTGACAGACACTAACGGGG..........................................................................................................	22	3	1	9.00	9	9	0	0	0	0	0
....................................................................TTTGACCGACACTAACGGGT..........................................................................................................	20	1	1	8.00	8	1	1	4	2	0	0
..................................................................TTTGTGAGCGACACTAACGGGC..........................................................................................................	22	2	1	8.00	8	6	2	0	0	0	0
..................................................................TTTGTGACGGACGCTAACGGGT..........................................................................................................	22	2	1	8.00	8	2	0	6	0	0	0
..................................................................TTTGTGACCGACACTAACGAG...........................................................................................................	21	1	1	8.00	8	0	8	0	0	0	0
..................................................................TTTGTGACCGACACTAACGGA...........................................................................................................	21	1	1	8.00	8	3	4	1	0	0	0
.................................................................ATTTGTGACCGACACTAACGGGTA.........................................................................................................	24	1	1	8.00	8	2	0	6	0	0	0
..................................................................TTTGTGACCGACACTACCGGGTC.........................................................................................................	23	2	1	8.00	8	3	5	0	0	0	0
..................................................................TTTGTGACCGACACTACAGGGT..........................................................................................................	22	2	1	8.00	8	4	4	0	0	0	0
..................................................................TTTGTGACCGATACTAACGGGTA.........................................................................................................	23	1	1	8.00	8	3	5	0	0	0	0
...................................................................TTGTGACCAACACTAACGGGT..........................................................................................................	21	1	1	8.00	8	0	1	7	0	0	0
...................................................................TTGTGACCGACACTAACGGGG..........................................................................................................	21	1	1	8.00	8	4	3	1	0	0	0
.................................................................TTTTGTGACCGACACTAACGGGTA.........................................................................................................	24	0	1	8.00	8	0	0	8	0	0	0
..................................................................TTTGTGACCGACACTAACGGCTA.........................................................................................................	23	1	1	8.00	8	4	2	2	0	0	0
..................................................................TTTGTGACCGACACTCACGGGG..........................................................................................................	22	2	1	8.00	8	6	2	0	0	0	0
..................................................................TTTGTGACCGACACTACCGGTA..........................................................................................................	22	3	1	8.00	8	4	4	0	0	0	0
...................................................................TTGTGACCGACGCTAACGGGT..........................................................................................................	21	1	1	8.00	8	4	2	2	0	0	0
..................................................................TTTGTGACCGACACTACCGGGTAT........................................................................................................	24	2	1	8.00	8	4	4	0	0	0	0
..................................................................TTTGTGACCGACACTAATGGGC..........................................................................................................	22	2	1	8.00	8	5	3	0	0	0	0
..................................................................GTTGGGACCGACACTAACGGGT..........................................................................................................	22	2	1	8.00	8	7	1	0	0	0	0
..................................................................TTTGTGACCGACACTAACGAAT..........................................................................................................	22	2	1	8.00	8	1	7	0	0	0	0
..................................................................TTGGGGACCGACACTAACGGGC..........................................................................................................	22	3	1	8.00	8	8	0	0	0	0	0
..................................................................TTTGGGACCGACACTAACGGGCA.........................................................................................................	23	2	1	8.00	8	6	1	1	0	0	0
..................................................................TTTGTGACCGACACTCCCGGGT..........................................................................................................	22	2	1	8.00	8	6	2	0	0	0	0
..................................................................TTTGTGACCGACACTAACGGGTTA........................................................................................................	24	1	1	8.00	8	7	1	0	0	0	0
..................................................................TTTGTGACAGACACGAACGGGT..........................................................................................................	22	2	1	8.00	8	8	0	0	0	0	0

CGTAAGGGGACCCTGGACCGTGGACCCTGGACCGTGGACCCTGGACCAGGGCACGACGTCAAAGTAAAACACTGGCTGTGATTGCCCATTACCGACCGGCGTCCTGATGAGCAAAAACGCTAGTGTTATGACTTTAACGTCGTTGCTCGTCGCTTTGACACCTTACACACGTTTTGTCACACTTTTCACTAGAT **********************************************.(((((((((((((..((((((.((.((..((((((((....(((....)))...))))))))..)))).))))))...)))))))))))))...*************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V057 head	M042 female body
..............................................................AGTAAAACACGGGCTGTGATT...............................................................................................................	21	1	1	1.00	1	1	0
..................CGTGGACGCTTGACTGTGG.............................................................................................................................................................	19	3	15	0.07	1	0	1

Species	Coordinate	ID	Type	Alignment
droPer2	scaffold_61:320206-320399 -	dpe-mir-274	Known_mirbase	GCA------TT--------------------------------C--CCCTGGGACCTGGCACCTGGGACCTGGCACCTGGGACCTGGTCCC--------GTGCTGCAGTTTCATTTTGTGACCGACACTAACGGGTAATGGC-TGGCC----------------------G---CAGGA--CTACTCGTTTTTGCGATCACA-ATACTGAAATTGCAGCAACGA-GCAGCGAAACTGTGGAATGTGTGCAAAA-----------------CAGTGTG-AAAAGTGATCTA---
dp5	XR_group6:10040142-10040330 -	dps-mir-274	Known_mirbase	GCA------TT--------------------------------C--CCCTGGGACCTGGG-------ACCTGGCACCTGGAACCTGGTCCC--------GTGCTGCAGTTTCATTTTGTGACCGACACTAACGGGTAATGGC-TGGCC----------------------G---CAGGA--CTACTCGTTTTTGCGATCACA-ATACTGAAATTGCAGCAACGA-GCAGCGAAACTGTGGAATGTGTGTGCA---------------AAACAGTGTG-AAAAGTGATCTA---
droWil2	scf2_1100000004762:2705101-2705283 -	dwi-mir-274	Known_mirbase	TGA------TT--------------------------------ATTTT----------------------------------TAATATCC----------TGTTGCAGTTTCATTTTGTGACCGACACTAACGGGTAGTAAC-GGGTTAACA-A--AGTCG---TT--TTTCTGGCCTT--TTACTCGTTTTTGCGATCACAAATTCTGAAATTGCAGCAAAAGATCAACGTAT-----------ACAACAAACACATAAAATGATAAGACAGAGTAGACAAGTGA---A---
droVir3	scaffold_13049:23860688-23860833 +	dvi-mir-274	Known_mirbase	TTT--------CC-C--------------AGTG------AATC---------------------------------CCAATGTCGCATCCTGT------TTGTTGCAGTTTCGGTTTGTGACCGACACTAACGGGTAGTTGG---GGCACC----------TCGAAT-ACG---CTGTT--TTACTCGTTTTTGCGATCACAAATTCTGAAATTGCAACGAAAA-GCAACAAGA-----------------------------------------------------------
droMoj3	scaffold_6680:18485480-18485614 +	dmo-mir-274	Known_mirbase	--------------------------------------------------------------------------------------ATCCT--------GTGTTGCAGTTTCGGTTTGTGACCGACACTAACGGGTAGTTGA--GGCAT-C----------TCGTAT-TCG---CTGTTTTATACTCGTTTTTGCGATCACAAATTCTGAAATTGCAACGAAAC-GCAACGAAA-----------ATGAAAAG------------------------------TG-CA----T
droGri2	scaffold_15110:13805587-13805748 -	dgr-mir-274	Known_mirbase	AAAGTGAAA--TA---------------------------------------GTGCAAC-------------------GTATACGAGTCCTGT----GCGTGTTGCAGTTTCGGTTTGTGACCGACACTAACGGGTAGTTAAAGGGCATCC----------TCGCATTCTG---CTGGC--TTACTCGTTTTTGCGATCACAAATTCTGAAATTGCAACGAAAA-TCAACAAAACCATAAAA---------------------------------------------------
droAna3	scaffold_13337:5918601-5918728 +	dan-mir-274	Known_mirbase	CCT------TT--------------------------------T--TTTAAAAAACAGAA---------------------------------------ATGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTATTTTACAGGACA--------------------TA---CAGGA--TTACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCAAAAA-ACAGCAAA------------------------------------------------------------
droBip1	scf7180000396371:1256523-1256647 +			TGT------T------------------------------------TT-TGA----------------------------AGACAGA------------ATGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTATTTTACAGGAT--------------------TTA---CAGGA--TTACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCAAAAA-ACAGCAAAA-----------------------------------------------------------
droKik1	scf7180000302391:1192120-1192293 -			GAA-----A--TA--------------------GTAAAAAGTT----------------------------------------CCTATCCTTTTTTAACGTGTTGCTGTTTCGCTTTGTGACCGACACTAACGGGTAATTGTTTGGCCTTCT-T--AGCCG---TT--CCG---CTGGA--TTACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCTAAGA-GCAGCATTCAAGTGGAACTAGTGAACG----------------------------------TA----T
droFic1	scf7180000454113:3056714-3056876 -			ATT---------TGC-CCAGGCTAAAGCCAGTGATCAGGAGTT----------------------------------------CCTATCCT--------GTGTTGTTGTTTCGTTTTGTGACCGACACTAACGGGTAATTGATCGGCCCCCAAA--AGCCG---CCCACCG---CAGGA--TTACTCGTTTTTGCGATCACAAATCCTGAAATTTCAGCAAAGA-GCAGCAA-------------------------------------------------------------
droEle1	scf7180000490993:2151280-2151451 -			GAAAT------CACCTCA-TGGTGCTTCTGGTGATCAAGAGTT---------------------------------------CCGAATCCT--------GTGCTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGATTGGCCC--------------------CG---CAGGA--TTACTCGTTTCTGCGATCACAAATCATGAAATTGCAGCCAAAA-GCAACAAAATCGTGGAACCAGTGAAAA-----------------------------------------
droRho1	scf7180000778919:9014-9150 +			C----------------------------------------------------------------------------------CAAATCCT--------GTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTCGGCT--------------------CCG---CAGGA--TTACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAAA-GCAGCAAAATCGTGGAACCAGTGAAAAA----------------------------------------
droBia1	scf7180000302334:85633-85792 +			CAC-----------C---------------------------T----C-CAA----------------------------ACCCACATCCT--------GTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTCCGGCCCCCAGG--AGCCG---CC--CCT---CAGGA--TTACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCAAAGA-GCAGCAAAGTCCTGGAACCAGTGAAAA-----------------------------------------
droTak1	scf7180000414445:560320-560511 -			ATTCCGAAA--CACCTCAAATGGAAAACAAGTTACCAAGAGTT---------------------------------CCGAATCCGAATCCT--------GTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTCGGCCCCCAAA--AGCCG---CC--CCG---CAGGA--TTACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCAAAGA-GCAGCAAAATCAAGGAACCAGTG---------------------------------------------
droEug1	scf7180000409711:3524210-3524388 +			AT---------CACCTCA-GGGTCCAACTAATTATCAAGAGTT---------------------------------------CCAAATCCT--------GTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTATGGCCTAAA-AGGAGCCG---CT--CAC---CAGGA--TTACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAAA-GCAGCTAAATCAGGGAACTAGTG---------------------------------------------
dm3	chr3L:11649981-11650165 +	dme-mir-274	Known_mirbase	GCA----------TTTTAATTTTAATATTGGT-------AGTT---------------------------------TTGGTGACGAATCCT--------GTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGGCCGC------------------------CAGGA--TTACTCGTTTTTGCGATCACAAATTATGAAATTGCAGCAAAAC-TCAACGAAATTGTGGAACCAGTAAAAA------------------TAG-ATA-GAAAATAATATG---
droSim2	3l:11358245-11358379 +	dsi_305	confident	A----------------------------------------------------------------------------------CAAATCCT--------GTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGGTCAC------------------------CAGGA--TTACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAAC-GCAACAAAGTCGTGGAACTAGTGAAAA-----------------------------------------
droSec2	scaffold_0:3837022-3837169 +	dse-mir-274	Known_mirbase	A----------------------------------------------------------------------------------CAAATCCT--------GTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGATCAC------------------------CAGGA--TTACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAAC-GCAACAAATATATAGAAAATATATAGA----------------------------AAATAATAAGTTT
droYak3	3L:11678591-11678766 +	dya-mir-274	Known_mirbase	AAA--------CA------------------------------C--CTTTAAGTGCAGCTAGTTAGTGTTTGAT-T-TTATGCCGAATCCT--------GTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGGTCGC------------------------CAGGA--TTACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAAC-GCAACAAAGTCGTGAAACCAGTGAATAA----------------------------------------
droEre2	scaffold_4784:11632253-11632434 +	der-mir-274	Known_mirbase	AAA--------CA------------------------------C--CCATAAGTGCAGCTGGTTAGTGCTTGAT-T-TTATGGCCAATCCT--------GTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGGCCGC------------------------CAGGA--TTACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAAC-GCAACGAAGTCGTGAAGCCAGTGAAAAA------------------------------TAATA----T

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

GCA------TT--------------------------------C--CCCTGGGACCTGGCACCTGGGACCTGGCACCTGGGACCTGGTCCC--------GTGCTGCAGTTTCATTTTGTGACCGACACTAACGGGTAATGGC-TGGCC----------------------G---CAGGA--CTACTCGTTTTTGCGATCACA-ATACTGAAATTGCAGCAACGA-GCAGCGAAACTGTGGAATGTGTGCAAAA-----------------CAGTGTG-AAAAGTGATCTA---	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................................................................................................................TTTGTGACCGACACTAACGGGT.............................................................................................................................................................	22	1	103647.00	103647	28	6610	2	44995	50639	1373
..................................................................................................................TTTGTGACCGACACTAACGGGTA............................................................................................................................................................	23	1	17238.00	17238	1	5560	1	7636	3965	75
..................................................................................................................TTTGTGACCGACACTAACGGG..............................................................................................................................................................	21	1	3448.00	3448	8	1576	0	1003	855	6
..................................................................................................................TTTGTGACCGACACTAACGGGC.............................................................................................................................................................	22	1	2054.00	2054	3	16	0	691	1336	8
..................................................................................................................TTTGTGACCGACACTAACGGGTAA...........................................................................................................................................................	24	1	1587.00	1587	0	68	0	985	526	8
..................................................................................................................TTTGTGACCGACACTAACGGGA.............................................................................................................................................................	22	1	1218.00	1218	0	22	0	506	674	16
...................................................................................................................TTGTGACCGACACTAACGGGT.............................................................................................................................................................	21	1	924.00	924	0	553	1	173	188	9
..................................................................................................................TTTGTGACCGACACTAACGGGTAT...........................................................................................................................................................	24	1	920.00	920	0	83	0	422	409	6
..................................................................................................................TTTGTGACCGACACTAACGG...............................................................................................................................................................	20	1	707.00	707	0	245	0	238	220	4
..................................................................................................................TTTGTGACCGACACTAACG................................................................................................................................................................	19	1	696.00	696	0	99	0	307	290	0
...................................................................................................................TTGTGACCGACACTAACGGGTA............................................................................................................................................................	22	1	539.00	539	0	491	0	31	17	0
..................................................................................................................TTTGTGACCGACACTAACGGGG.............................................................................................................................................................	22	1	462.00	462	1	28	0	109	321	3
..................................................................................................................TTTGTGACCGACACTAACGGGTT............................................................................................................................................................	23	1	329.00	329	0	52	0	152	123	2
..................................................................................................................TTTGTGACCGACACTAACGGGTC............................................................................................................................................................	23	1	128.00	128	0	6	0	43	79	0
...................................................................................................................TTGTGACCGACACTAACGGG..............................................................................................................................................................	20	1	120.00	120	0	119	0	0	1	0
........................................................................................................................................................................................CTCGTTTTTGCGATCACA-ATACT.....................................................................................	23	1	115.00	115	0	48	0	21	45	1
..................................................................................................................TTTGTGACCGACACTAACGGT..............................................................................................................................................................	21	1	97.00	97	0	21	0	36	40	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAC...........................................................................................................................................................	24	1	92.00	92	0	39	0	29	24	0
..................................................................................................................TTTGTGACCGACACTAACGT...............................................................................................................................................................	20	1	80.00	80	0	1	0	19	59	1
....................................................................................................................TGTGACCGACACTAACGGGT.............................................................................................................................................................	20	1	79.00	79	0	36	0	27	16	0
..................................................................................................................TTTGTGACCGACACTAACGGGTTT...........................................................................................................................................................	24	1	63.00	63	0	4	0	24	35	0
..................................................................................................................TTTGTGACCGACACTAACGGTC.............................................................................................................................................................	22	1	37.00	37	0	0	0	9	28	0
....................................................................................................................TGTGACCGACACTAACGGGTA............................................................................................................................................................	21	1	32.00	32	0	29	0	1	2	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAAA..........................................................................................................................................................	25	1	28.00	28	0	2	0	13	12	1
........................................................................................................................................................................................CTCGTTTTTGCGATCACA-ATAC......................................................................................	22	1	25.00	25	0	20	0	1	4	0
...................................................................................................................TTGTGACCGACACTAACGG...............................................................................................................................................................	19	1	23.00	23	0	21	0	2	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTG............................................................................................................................................................	23	1	20.00	20	0	0	0	14	6	0
..................................................................................................................TTTGTGACCGACACTAACGGCC.............................................................................................................................................................	22	1	20.00	20	0	0	0	5	15	0
.........................................................................................................................................................................................TCGTTTTTGCGATCACA-ATACT.....................................................................................	22	1	19.00	19	0	12	0	3	4	0
..................................................................................................................TTTGTGACCGACACTAACGGGCT............................................................................................................................................................	23	1	17.00	17	0	0	0	10	7	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAG...........................................................................................................................................................	24	1	17.00	17	0	2	0	4	11	0
..................................................................................................................TTTGTGACCGACACTAACGGTA.............................................................................................................................................................	22	1	16.00	16	0	3	0	3	10	0
..................................................................................................................TTTGTGACCGACACTAACGGTG.............................................................................................................................................................	22	1	16.00	16	0	0	0	2	14	0
.................................................................................................................TTTTGTGACCGACACTAACGGGT.............................................................................................................................................................	23	1	13.00	13	0	7	0	2	4	0
....................................................................................................................TGTGACCGACACTAACGGG..............................................................................................................................................................	19	1	13.00	13	0	13	0	0	0	0
........................................................................................................................................................................................CTCGTTTTTGCGATCACA-ATA.......................................................................................	21	1	12.00	12	0	3	0	6	3	0
..................................................................................................................TTTGTGACCGACACTAACGGGTCT...........................................................................................................................................................	24	1	12.00	12	0	0	0	6	6	0
...................................................................................................................TTGTGACCGACACTAACGGGTAA...........................................................................................................................................................	23	1	12.00	12	0	1	0	8	3	0
.....................................................................................................................GTGACCGACACTAACGGGT.............................................................................................................................................................	19	1	11.00	11	0	7	0	2	2	0
..................................................................................................................TTTGTGACCGACACTAAC.................................................................................................................................................................	18	1	10.00	10	0	3	0	2	5	0
...................................................................................................................TTGTGACCGACACTAACGGGTAT...........................................................................................................................................................	23	1	9.00	9	0	6	0	0	3	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAAT..........................................................................................................................................................	25	1	9.00	9	0	0	0	6	3	0
..................................................................................................................TTTGTGACCGACACTAACGGA..............................................................................................................................................................	21	1	8.00	8	0	1	0	4	3	0
...................................................................................................................TTGTGACCGACACTAACGGGG.............................................................................................................................................................	21	1	8.00	8	0	1	0	3	4	0
.................................................................................................................TTTTGTGACCGACACTAACGGGTA............................................................................................................................................................	24	1	8.00	8	0	8	0	0	0	0

dp5

GCA------TT--------------------------------C--CCCTGGGACCTGGG-------ACCTGGCACCTGGAACCTGGTCCC--------GTGCTGCAGTTTCATTTTGTGACCGACACTAACGGGTAATGGC-TGGCC----------------------G---CAGGA--CTACTCGTTTTTGCGATCACA-ATACTGAAATTGCAGCAACGA-GCAGCGAAACTGTGGAATGTGTGTGCA---------------AAACAGTGTG-AAAAGTGATCTA---	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..................................................................................................................TTTGTGACCGACACTAACGGGT.............................................................................................................................................................	22	1	76186.00	76186	185	21388	2	9338	8	41522	3297	6	440	0
..................................................................................................................TTTGTGACCGACACTAACGGGTA............................................................................................................................................................	23	1	20543.00	20543	22	11860	4	2311	1	5856	130	1	357	1
..................................................................................................................TTTGTGACCGACACTAACGGG..............................................................................................................................................................	21	1	6897.00	6897	17	4686	0	1089	0	937	40	0	128	0
..................................................................................................................TTTGTGACCGACACTAACGGGC.............................................................................................................................................................	22	1	2550.00	2550	8	62	0	1819	0	641	17	0	3	0
...................................................................................................................TTGTGACCGACACTAACGGGT.............................................................................................................................................................	21	1	2399.00	2399	1	1934	0	125	0	299	33	0	7	0
..................................................................................................................TTTGTGACCGACACTAACGG...............................................................................................................................................................	20	1	1665.00	1665	7	927	1	330	0	354	19	0	27	0
...................................................................................................................TTGTGACCGACACTAACGGGTA............................................................................................................................................................	22	1	1176.00	1176	0	1100	0	26	0	44	3	0	3	0
..................................................................................................................TTTGTGACCGACACTAACG................................................................................................................................................................	19	1	1123.00	1123	0	485	0	91	0	542	0	0	5	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAA...........................................................................................................................................................	24	1	860.00	860	0	130	0	14	0	685	15	0	16	0
..................................................................................................................TTTGTGACCGACACTAACGGGA.............................................................................................................................................................	22	1	645.00	645	1	104	0	55	0	462	20	0	3	0
..................................................................................................................TTTGTGACCGACACTAACGGGTT............................................................................................................................................................	23	1	581.00	581	5	171	0	199	0	198	1	0	7	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAT...........................................................................................................................................................	24	1	493.00	493	0	150	0	32	0	268	18	1	24	0
...................................................................................................................TTGTGACCGACACTAACGGG..............................................................................................................................................................	20	1	482.00	482	0	471	0	9	0	2	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGG.............................................................................................................................................................	22	1	233.00	233	0	54	0	8	1	166	1	0	3	0
........................................................................................................................................................................................CTCGTTTTTGCGATCACA-ATACT.....................................................................................	23	1	232.00	232	0	134	0	53	0	42	2	0	1	0
..................................................................................................................TTTGTGACCGACACTAACGGT..............................................................................................................................................................	21	1	165.00	165	0	78	0	48	0	35	4	0	0	0
....................................................................................................................TGTGACCGACACTAACGGGT.............................................................................................................................................................	20	1	142.00	142	1	119	0	8	0	10	3	0	1	0
..................................................................................................................TTTGTGACCGACACTAACGGGTC............................................................................................................................................................	23	1	107.00	107	2	28	0	16	0	57	3	0	1	0
.........................................................................................................................................ATGGC-TGGCC----------------------G---CAGGA--CTA.............................................................................................................	19	1	103.00	103	1	98	0	1	0	1	2	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAC...........................................................................................................................................................	24	1	102.00	102	0	70	0	21	0	8	0	0	3	0
...................................................................................................................TTGTGACCGACACTAACGG...............................................................................................................................................................	19	1	88.00	88	0	81	0	5	0	2	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGT...............................................................................................................................................................	20	1	85.00	85	1	10	0	8	0	57	9	0	0	0
....................................................................................................................TGTGACCGACACTAACGGGTA............................................................................................................................................................	21	1	81.00	81	0	77	0	1	0	3	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTTT...........................................................................................................................................................	24	1	49.00	49	0	18	0	10	0	20	0	0	1	0
........................................................................................................................................................................................CTCGTTTTTGCGATCACA-ATAC......................................................................................	22	1	43.00	43	0	29	0	11	0	3	0	0	0	0
.........................................................................................................................................................................................TCGTTTTTGCGATCACA-ATACT.....................................................................................	22	1	42.00	42	0	32	0	6	0	4	0	0	0	0
.................................................................................................................TTTTGTGACCGACACTAACGGGT.............................................................................................................................................................	23	1	40.00	40	0	29	0	6	0	5	0	0	0	0
...................................................................................................................TTGTGACCGACACTAACG................................................................................................................................................................	18	1	38.00	38	0	38	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAAA..........................................................................................................................................................	25	1	25.00	25	0	4	0	0	0	20	0	0	1	0
........................................................................................................................................................................................CTCGTTTTTGCGATCACA-ATA.......................................................................................	21	1	24.00	24	0	16	0	1	0	7	0	0	0	0
....................................................................................................................TGTGACCGACACTAACGGG..............................................................................................................................................................	19	1	24.00	24	0	23	0	1	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTG............................................................................................................................................................	23	1	23.00	23	1	14	0	1	0	7	0	0	0	0
...................................................................................................................TTGTGACCGACACTAACGGGTT............................................................................................................................................................	22	1	23.00	23	0	17	0	4	0	0	0	0	2	0
...................................................................................................................TTGTGACCGACACTAACGGGC.............................................................................................................................................................	21	1	23.00	23	0	3	0	20	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAG...........................................................................................................................................................	24	1	22.00	22	0	9	0	6	0	7	0	0	0	0
...................................................................................................................TTGTGACCGACACTAACGGGTAA...........................................................................................................................................................	23	1	22.00	22	0	18	0	0	0	4	0	0	0	0
.................................................................................................................TTTTGTGACCGACACTAACGGGTA............................................................................................................................................................	24	1	21.00	21	0	20	0	1	0	0	0	0	0	0
.....................................................................................................................GTGACCGACACTAACGGGT.............................................................................................................................................................	19	1	21.00	21	0	16	0	4	0	1	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGAC.............................................................................................................................................................	22	1	20.00	20	0	0	0	19	0	1	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGA..............................................................................................................................................................	21	1	19.00	19	0	3	0	2	0	14	0	0	0	0
...................................................................................................................TTGTGACCGACACTAACGGGTAT...........................................................................................................................................................	23	1	18.00	18	0	16	0	1	0	1	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGC..............................................................................................................................................................	21	1	17.00	17	0	1	0	10	0	6	0	0	0	0
.........................................................................................................................................ATGGC-TGGCC----------------------G---CAGGA--CT..............................................................................................................	18	1	15.00	15	1	12	0	2	0	0	0	0	0	0
........................................................................................................................................................................................CTCGTTTTTGCGATCACA-ATACC.....................................................................................	23	1	15.00	15	0	1	0	13	0	1	0	0	0	0
...................................................................................................................TTGTGACCGACACTAACGGGA.............................................................................................................................................................	21	1	14.00	14	0	13	0	0	0	1	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAAC.................................................................................................................................................................	18	1	13.00	13	0	6	0	6	0	1	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGTC.............................................................................................................................................................	22	1	11.00	11	0	0	0	3	0	8	0	0	0	0
.....................................................................................................................GTGACCGACACTAACGGGTA............................................................................................................................................................	20	1	11.00	11	0	11	0	0	0	0	0	0	0	0
..........................................................................................................................................TGGC-TGGCC----------------------G---CAGGA--CTA.............................................................................................................	18	1	10.00	10	0	10	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................TCGTTTTTGCGATCACA-ATAC......................................................................................	21	1	9.00	9	0	8	0	1	0	0	0	0	0	0
.....................................................................................................................GTGACCGACACTAACGGG..............................................................................................................................................................	18	1	8.00	8	0	7	0	1	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGTG.............................................................................................................................................................	22	1	8.00	8	0	0	0	0	0	8	0	0	0	0
...................................................................................................................TTGTGACCGACACTAACGGT..............................................................................................................................................................	20	1	7.00	7	0	7	0	0	0	0	0	0	0	0
...................................................................................................................TTGTGACCGACACTAACGGGTAC...........................................................................................................................................................	23	1	7.00	7	0	7	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGCC.............................................................................................................................................................	22	1	7.00	7	0	0	0	1	0	6	0	0	0	0
.................................................................................................................TTTTGTGACCGACACTAACGGG..............................................................................................................................................................	22	1	7.00	7	0	7	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGTA.............................................................................................................................................................	22	1	6.00	6	0	0	0	3	0	3	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGCT............................................................................................................................................................	23	1	6.00	6	0	0	0	0	0	6	0	0	0	0
...................................................................................................................TTGTGACCGACACTAACGGGG.............................................................................................................................................................	21	1	6.00	6	0	4	0	1	0	1	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGCA.............................................................................................................................................................	22	1	5.00	5	0	1	0	0	0	4	0	0	0	0
......................................................................................................................TGACCGACACTAACGGGT.............................................................................................................................................................	18	1	5.00	5	0	3	0	2	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACT................................................................................................................................................................	19	1	5.00	5	0	3	0	0	0	2	0	0	0	0
......................................................................................................................TGACCGACACTAACGGGTA............................................................................................................................................................	19	1	5.00	5	0	4	0	0	0	1	0	0	0	0
.........................................................................................................................................ATGGC-TGGCC----------------------G---CAGGA--CTT.............................................................................................................	19	1	4.00	4	0	3	0	0	0	1	0	0	0	0

droWil2

TGA------TT--------------------------------ATTTT----------------------------------TAATATCC----------TGTTGCAGTTTCATTTTGTGACCGACACTAACGGGTAGTAAC-GGGTTAACA-A--AGTCG---TT--TTTCTGGCCTT--TTACTCGTTTTTGCGATCACAAATTCTGAAATTGCAGCAAAAGATCAACGTAT-----------ACAACAAACACATAAAATGATAAGACAGAGTAGACAAGTGA---A---	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..................................................................................................................TTTGTGACCGACACTAACGGGT.............................................................................................................................................................	22	1	100531.00	100531	28827	4170	1015	229	66290
..................................................................................................................TTTGTGACCGACACTAACGGGTA............................................................................................................................................................	23	1	13118.00	13118	3877	3707	59	69	5406
..................................................................................................................TTTGTGACCGACACTAACGGG..............................................................................................................................................................	21	1	6236.00	6236	3983	1253	15	2	983
..................................................................................................................TTTGTGACCGACACTAACGGGC.............................................................................................................................................................	22	1	3164.00	3164	2448	4	5	0	707
..................................................................................................................TTTGTGACCGACACTAACGG...............................................................................................................................................................	20	1	1727.00	1727	748	134	4	1	840
..................................................................................................................TTTGTGACCGACACTAACGGGG.............................................................................................................................................................	22	1	1556.00	1556	1296	9	1	2	248
..................................................................................................................TTTGTGACCGACACTAACGGGA.............................................................................................................................................................	22	1	1277.00	1277	188	29	12	2	1046
..................................................................................................................TTTGTGACCGACACTAACGGGTAA...........................................................................................................................................................	24	1	673.00	673	35	53	5	2	578
...................................................................................................................TTGTGACCGACACTAACGGGT.............................................................................................................................................................	21	1	591.00	591	28	340	3	1	219
..................................................................................................................TTTGTGACCGACACTAACG................................................................................................................................................................	19	1	551.00	551	156	59	1	0	335
..................................................................................................................TTTGTGACCGACACTAACGGGTAT...........................................................................................................................................................	24	1	384.00	384	70	69	4	6	235
...................................................................................................................TTGTGACCGACACTAACGGGTA............................................................................................................................................................	22	1	366.00	366	2	351	0	0	13
..................................................................................................................TTTGTGACCGACACTAACGGGTC............................................................................................................................................................	23	1	249.00	249	140	36	0	0	73
..................................................................................................................TTTGTGACCGACACTAACGGT..............................................................................................................................................................	21	1	148.00	148	12	3	2	1	130
..................................................................................................................TTTGTGACCGACACTAACGGGTT............................................................................................................................................................	23	1	147.00	147	100	11	3	1	32
...................................................................................................................TTGTGACCGACACTAACGGG..............................................................................................................................................................	20	1	86.00	86	8	77	0	0	1
....................................................................................................................TGTGACCGACACTAACGGGT.............................................................................................................................................................	20	1	80.00	80	2	29	2	0	47
..................................................................................................................TTTGTGACCGACACTAACGGGTAG...........................................................................................................................................................	24	1	74.00	74	42	5	0	0	27
..................................................................................................................TTTGTGACCGACACTAACGGGTAC...........................................................................................................................................................	24	1	44.00	44	13	21	0	0	10
........................................................................................................................................................................................CTCGTTTTTGCGATCACAAATT.......................................................................................	22	1	38.00	38	4	3	0	0	31
..................................................................................................................TTTGTGACCGACACTAACGGA..............................................................................................................................................................	21	1	31.00	31	13	1	0	0	17
........................................................................................................................................................................................CTCGTTTTTGCGATCACAAATTC......................................................................................	23	1	31.00	31	23	4	0	0	4
..................................................................................................................TTTGTGACCGACACTAACGGAC.............................................................................................................................................................	22	1	30.00	30	30	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTG............................................................................................................................................................	23	1	29.00	29	20	2	0	0	7
..................................................................................................................TTTGTGACCGACACTAACGGGTAAA..........................................................................................................................................................	25	1	26.00	26	1	2	0	0	23
........................................................................................................................................................................................CTCGTTTTTGCGATCACAAATTCT.....................................................................................	24	1	20.00	20	12	4	0	0	4
....................................................................................................................TGTGACCGACACTAACGGGTA............................................................................................................................................................	21	1	20.00	20	0	18	0	0	2
..................................................................................................................TTTGTGACCGACACTAACGT...............................................................................................................................................................	20	1	19.00	19	7	0	0	0	12
...................................................................................................................TTGTGACCGACACTAACGG...............................................................................................................................................................	19	1	17.00	17	0	12	0	0	5
..................................................................................................................TTTGTGACCGACACTAAC.................................................................................................................................................................	18	1	16.00	16	15	0	0	0	1
..................................................................................................................TTTGTGACCGACACTAACGGGTTT...........................................................................................................................................................	24	1	14.00	14	1	2	0	0	11
......................................................................................................................TGACCGACACTAACGGGT.............................................................................................................................................................	18	1	13.00	13	4	4	0	0	5
.....................................................................................................................GTGACCGACACTAACGGGT.............................................................................................................................................................	19	1	12.00	12	2	6	0	0	4
..................................................................................................................TTTGTGACCGACACTAACGGGTCA...........................................................................................................................................................	24	1	11.00	11	0	2	0	0	9
...................................................................................................................TTGTGACCGACACTAACGGGTAT...........................................................................................................................................................	23	1	11.00	11	0	9	0	0	2
.................................................................................................................TTTTGTGACCGACACTAACGGGT.............................................................................................................................................................	23	1	11.00	11	0	8	0	0	3
...................................................................................................................TTGTGACCGACACTAACGGGA.............................................................................................................................................................	21	1	10.00	10	0	4	0	0	6
................................................................................................................ATTTTGTGACCGACACTAACGGG..............................................................................................................................................................	23	1	10.00	10	4	6	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTGT...........................................................................................................................................................	24	1	8.00	8	1	0	0	0	7
....................................................................................................................TGTGACCGACACTAACGGG..............................................................................................................................................................	19	1	8.00	8	0	8	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGTA.............................................................................................................................................................	22	1	8.00	8	0	2	0	0	6
...................................................................................................................TTGTGACCGACACTAACG................................................................................................................................................................	18	1	7.00	7	0	6	0	0	1
..................................................................................................................TTTGTGACCGACACTAACGGGTACA..........................................................................................................................................................	25	1	7.00	7	1	1	0	0	5
...................................................................................................................TTGTGACCGACACTAACGGGTAA...........................................................................................................................................................	23	1	6.00	6	0	4	0	0	2
.....................................................................................................................GTGACCGACACTAACGGGTA............................................................................................................................................................	20	1	6.00	6	0	6	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAGT..........................................................................................................................................................	25	1	6.00	6	0	2	1	0	3
..................................................................................................................TTTGTGACCGACACTAACGGGTCT...........................................................................................................................................................	24	1	6.00	6	0	2	0	0	4
................................................................................................................ATTTTGTGACCGACACTAACGGGT.............................................................................................................................................................	24	1	5.00	5	3	1	0	0	1
..................................................................................................................TTTGTGACCGACACTAACGGGTCC...........................................................................................................................................................	24	1	5.00	5	2	0	0	0	3
..................................................................................................................TTTGTGACCGACACTAACGGAA.............................................................................................................................................................	22	1	5.00	5	0	0	0	0	5
.........................................................................................................................................................................................TCGTTTTTGCGATCACAAATT.......................................................................................	21	1	5.00	5	0	2	0	0	3
...................................................................................................................TTGTGACCGACACTAACGGGC.............................................................................................................................................................	21	1	5.00	5	5	0	0	0	0
.....................................................................................................................................................ACA-A--AGTCG---TT--TTTCTGGCCT...................................................................................................................	21	1	5.00	5	5	0	0	0	0
......................................................................................................................................................CA-A--AGTCG---TT--TTTCTGGCC....................................................................................................................	19	1	5.00	5	5	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTATA..........................................................................................................................................................	25	1	4.00	4	2	1	0	0	1
..................................................................................................................TTTGTGACCGACACTAACCC...............................................................................................................................................................	20	1	4.00	4	3	0	0	0	1
..................................................................................................................TTTGTGACCGACACTAACGGC..............................................................................................................................................................	21	1	4.00	4	3	1	0	0	0
...................................................................................................................TTGTGACCGACACTAACGGGTC............................................................................................................................................................	22	1	4.00	4	0	3	0	0	1
......................................................................................................................................................CA-A--AGTCG---TT--TTTCTGGCCT...................................................................................................................	20	1	4.00	4	4	0	0	0	0
................................................................................................................ATTTTGTGACCGACACTAACG................................................................................................................................................................	21	1	3.00	3	1	1	0	0	1
.................................................................................................................TTTTGTGACCGACACTAACGGGTA............................................................................................................................................................	24	1	3.00	3	0	3	0	0	0
.........................................................................................................................................................................................TCGTTTTTGCGATCACAAATTCT.....................................................................................	23	1	3.00	3	0	2	0	0	1
..................................................................................................................TTTGTGACCGACACTAACGTA..............................................................................................................................................................	21	1	3.00	3	0	0	0	0	3
..................................................................................................................TTTGTGACCGACACTAACGGGCC............................................................................................................................................................	23	1	3.00	3	1	0	0	0	2
..................................................................................................................TTTGTGACCGACACTAACGA...............................................................................................................................................................	20	1	3.00	3	0	0	0	0	3
..........................................................................................................................................................................................CGTTTTTGCGATCACAAATTCT.....................................................................................	22	1	3.00	3	1	1	0	0	1
..................................................................................................................TTTGTGACCGACACTAACGGGTATC..........................................................................................................................................................	25	1	3.00	3	0	0	0	0	3

droVir3

TTT--------CC-C--------------AGTG------AATC---------------------------------CCAATGTCGCATCCTGT------TTGTTGCAGTTTCGGTTTGTGACCGACACTAACGGGTAGTTGG---GGCACC----------TCGAAT-ACG---CTGTT--TTACTCGTTTTTGCGATCACAAATTCTGAAATTGCAACGAAAA-GCAACAAGA-----------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
..................................................................................................................TTTGTGACCGACACTAACGGGT.............................................................................................................................................................	22	1	255753.00	255753	1178	10406	18134	8	33	4332	26	4707	63	4616	144	0	0	0	11211	8862	7397	13472	9220	5987	5551	14072	20659	123	250	156	319	289	11949	9595	3795	15985	1	3538	2	0	1	0	42	6153	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	137	0	5	57992	3811	0	215	351	0	0	0	50	69	102	237	417	85	0	0	3	2	1
..................................................................................................................TTTGTGACCGACACTAACGGGTA............................................................................................................................................................	23	1	109911.00	109911	172	1210	16057	3	6	420	1	196	2	129	6	0	0	0	9247	6435	4437	10561	4091	4544	760	6820	13844	26	194	97	203	214	8080	4137	2078	8392	0	310	3	0	0	0	7	750	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	23	1	2	5346	166	0	270	378	0	0	0	18	22	27	92	110	22	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGG..............................................................................................................................................................	21	1	25565.00	25565	200	1377	6456	0	1	104	1	65	4	47	3	0	0	0	1071	885	755	1388	635	485	136	1043	1519	1	33	19	45	27	2164	1742	751	2896	0	101	1	0	0	0	0	146	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	0	1146	53	0	17	105	0	0	0	13	10	13	27	58	10	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAA...........................................................................................................................................................	24	1	14391.00	14391	3	25	230	0	0	23	1	15	0	7	1	0	0	0	1810	939	739	1911	769	992	69	1343	2290	0	6	7	10	8	691	464	203	890	0	33	0	0	0	0	0	71	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	782	11	0	11	36	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAT...........................................................................................................................................................	24	1	14088.00	14088	3	39	193	0	3	66	0	16	0	20	0	0	0	0	1208	1122	851	2018	753	865	162	1087	1953	0	14	5	22	18	655	495	305	1080	0	81	0	0	1	0	2	126	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	796	33	0	28	59	0	0	0	0	0	1	3	4	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGA.............................................................................................................................................................	22	1	3513.00	3513	14	173	161	0	0	83	0	52	2	61	2	0	0	0	74	39	88	102	70	45	48	133	163	1	1	0	0	0	66	100	23	122	0	63	0	0	0	0	0	65	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1671	88	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGC.............................................................................................................................................................	22	1	3189.00	3189	109	1271	32	1	0	21	0	15	0	15	2	0	0	0	30	20	15	30	16	11	37	29	47	0	1	0	0	0	10	6	9	49	0	8	0	0	0	0	0	37	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1346	21	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTT............................................................................................................................................................	23	1	2804.00	2804	9	112	88	0	0	20	0	2	0	4	0	0	0	0	211	167	196	345	156	125	21	276	355	1	3	1	2	4	113	112	51	172	0	7	0	0	0	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	212	3	0	4	7	0	0	0	0	0	0	1	2	1	0	0	0	0	0
...................................................................................................................TTGTGACCGACACTAACGGGT.............................................................................................................................................................	21	1	2270.00	2270	1	16	1698	0	0	12	0	16	0	5	2	0	0	0	33	25	14	28	21	15	15	36	46	0	0	2	3	0	37	23	10	47	0	4	0	0	0	0	0	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	129	9	0	0	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGG...............................................................................................................................................................	20	1	1855.00	1855	37	316	637	1	0	12	0	11	0	14	1	0	0	0	2	3	2	4	6	2	10	3	33	0	2	0	2	2	138	205	50	114	0	8	0	0	0	0	0	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	187	19	0	0	5	0	0	0	0	1	1	0	7	3	0	0	0	0	0
...................................................................................................................TTGTGACCGACACTAACGGGTA............................................................................................................................................................	22	1	1783.00	1783	0	1	1517	0	0	3	0	2	0	0	0	0	0	0	24	17	13	26	12	14	0	16	36	0	1	0	2	0	29	19	6	32	0	2	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGG.............................................................................................................................................................	22	1	1555.00	1555	93	714	43	0	0	6	0	14	0	9	1	0	0	0	24	21	13	18	8	4	7	19	28	1	0	0	0	0	3	1	2	48	0	2	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	420	22	0	3	2	0	0	0	0	1	5	5	5	3	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACG................................................................................................................................................................	19	1	1332.00	1332	1	44	124	0	0	39	0	3	1	4	0	0	0	0	22	37	27	47	27	21	52	29	40	1	0	0	1	2	105	198	43	148	0	32	0	0	0	0	0	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	251	2	0	0	1	0	0	0	2	0	0	0	1	2	0	0	0	0	0
...................................................................................................................TTGTGACCGACACTAACGGG..............................................................................................................................................................	20	1	661.00	661	0	1	621	0	0	0	0	0	0	0	0	0	0	0	2	4	2	4	0	0	0	6	3	0	0	0	0	0	3	3	4	5	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTC............................................................................................................................................................	23	1	644.00	644	12	14	176	0	0	9	0	1	0	0	0	0	0	0	31	31	3	28	13	29	20	37	76	2	1	1	1	3	9	11	4	18	0	4	0	0	0	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	69	2	0	2	0	0	0	0	0	3	3	4	12	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTTT...........................................................................................................................................................	24	1	481.00	481	1	8	15	0	0	12	0	1	0	2	0	0	0	0	35	31	23	84	15	22	6	36	66	0	0	0	1	0	13	12	7	29	0	6	0	0	0	0	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAAA..........................................................................................................................................................	25	1	385.00	385	0	1	4	0	0	0	0	0	0	1	0	0	0	0	50	33	17	50	24	30	0	31	66	0	0	0	1	0	15	10	5	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAC...........................................................................................................................................................	24	1	369.00	369	1	1	54	0	0	1	0	1	0	0	0	0	0	0	27	22	12	54	16	30	2	29	44	0	1	0	3	2	14	6	5	19	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAG...........................................................................................................................................................	24	1	218.00	218	3	10	17	0	0	1	0	0	0	0	0	0	0	0	13	9	10	16	11	8	4	12	35	0	0	0	0	0	14	9	5	12	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................TGTGACCGACACTAACGGGT.............................................................................................................................................................	20	1	195.00	195	0	1	115	0	0	0	0	0	0	3	0	0	0	0	2	3	4	3	4	3	0	8	6	0	0	1	0	0	5	0	1	9	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGT..............................................................................................................................................................	21	1	140.00	140	0	2	15	1	0	1	0	3	0	1	0	0	0	0	4	4	5	5	9	1	2	7	9	0	1	0	0	0	7	2	0	10	0	8	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32	8	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................CTCGTTTTTGCGATCACAAATTCT.....................................................................................	24	1	135.00	135	0	0	29	0	0	0	0	0	0	0	0	0	0	0	32	6	4	10	14	4	0	7	16	0	0	0	2	0	2	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGA..............................................................................................................................................................	21	1	124.00	124	0	31	7	0	0	0	0	0	0	0	0	0	0	0	5	7	2	4	6	3	2	4	9	0	0	0	0	0	2	4	1	7	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................TGTGACCGACACTAACGGGTA............................................................................................................................................................	21	1	110.00	110	0	1	83	0	0	0	0	0	0	0	0	0	0	0	1	0	3	4	1	0	1	3	4	0	0	0	0	0	1	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................CTCGTTTTTGCGATCACAAATTC......................................................................................	23	1	99.00	99	0	5	35	0	0	2	0	0	0	0	0	0	0	0	10	5	5	8	4	2	0	3	8	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	2	0	0	0	0	0	0	3	0	2	0	0	0	0	0
........................................................................................................................................................................................CTCGTTTTTGCGATCACAAATT.......................................................................................	22	1	69.00	69	0	0	10	0	0	0	0	0	0	0	0	0	0	0	5	3	5	13	3	2	0	5	3	0	1	0	0	0	1	2	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	1	0	2	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTG............................................................................................................................................................	23	1	69.00	69	0	13	10	0	0	3	0	1	0	0	0	0	0	0	2	2	2	4	0	2	0	3	5	0	0	0	0	0	2	0	1	4	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTCT...........................................................................................................................................................	24	1	68.00	68	0	0	7	0	0	1	0	1	0	0	0	0	0	0	3	2	1	9	1	9	2	11	4	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTATC..........................................................................................................................................................	25	1	64.00	64	0	0	2	0	0	0	0	0	0	0	0	0	0	0	6	7	2	2	3	6	0	6	16	0	0	0	0	0	2	0	1	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGCC.............................................................................................................................................................	22	1	62.00	62	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................TTGTGACCGACACTAACGG...............................................................................................................................................................	19	1	55.00	55	0	0	53	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAAC.................................................................................................................................................................	18	1	52.00	52	0	1	10	0	0	0	0	0	0	0	0	0	0	0	3	4	3	9	2	3	0	6	3	0	0	0	0	0	1	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................TTGTGACCGACACTAACGGGTAA...........................................................................................................................................................	23	1	49.00	49	0	0	14	0	0	1	0	0	0	0	0	0	0	0	5	2	1	2	3	1	0	5	2	0	1	0	0	0	8	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................TGTGACCGACACTAACGGG..............................................................................................................................................................	19	1	49.00	49	0	0	44	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................GGTTTGTGACCGACACTAACGGG..............................................................................................................................................................	23	1	49.00	49	0	1	42	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGTC.............................................................................................................................................................	22	1	46.00	46	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................TTGTGACCGACACTAACGGGTAT...........................................................................................................................................................	23	1	41.00	41	0	0	25	0	0	0	0	0	0	0	0	0	0	0	1	1	3	1	1	2	0	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGT...............................................................................................................................................................	20	1	38.00	38	1	4	0	0	0	3	0	1	0	3	0	0	0	0	0	0	1	1	0	0	2	0	0	0	0	0	0	0	1	1	0	1	0	6	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGTA.............................................................................................................................................................	22	1	36.00	36	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	1	1	0	0	10	5	3	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................GTGACCGACACTAACGGGT.............................................................................................................................................................	19	1	35.00	35	0	0	23	0	0	0	0	0	0	0	0	0	0	0	0	2	3	0	0	0	0	0	1	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................GTTTGTGACCGACACTAACGGGT.............................................................................................................................................................	23	1	34.00	34	0	0	30	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTTA...........................................................................................................................................................	24	1	34.00	34	0	0	2	0	0	0	0	1	0	0	0	0	0	0	5	2	1	4	0	1	0	2	4	0	0	0	0	0	0	0	2	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGAC.............................................................................................................................................................	22	1	32.00	32	3	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTTC...........................................................................................................................................................	24	1	32.00	32	0	0	8	0	0	0	0	0	0	0	0	0	0	0	2	2	1	1	0	1	0	3	9	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................TTGTGACCGACACTAACGGGA.............................................................................................................................................................	21	1	30.00	30	0	0	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................GTTTGTGACCGACACTAACGGGTA............................................................................................................................................................	24	1	29.00	29	0	0	25	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGC..............................................................................................................................................................	21	1	28.00	28	0	3	1	0	0	0	0	0	1	0	0	0	0	0	0	1	1	0	0	0	2	2	2	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTCA...........................................................................................................................................................	24	1	27.00	27	0	0	3	0	0	0	0	0	0	0	0	0	0	0	3	3	0	3	1	4	1	4	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTATA..........................................................................................................................................................	25	1	27.00	27	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	3	0	6	0	3	0	0	4	0	0	0	0	0	2	0	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGTG.............................................................................................................................................................	22	1	26.00	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGCG.............................................................................................................................................................	22	1	24.00	24	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	3	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................TTGTGACCGACACTAACGGGTC............................................................................................................................................................	22	1	24.00	24	0	0	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGAA.............................................................................................................................................................	22	1	24.00	24	0	2	1	0	0	1	0	1	0	0	0	0	0	0	1	1	0	1	0	0	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................GTGACCGACACTAACGGGTA............................................................................................................................................................	20	1	23.00	23	0	0	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................TCGTTTTTGCGATCACAAATTC......................................................................................	22	1	20.00	20	0	2	12	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTATCC.........................................................................................................................................................	26	1	20.00	20	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	1	1	0	1	4	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................TGACCGACACTAACGGGT.............................................................................................................................................................	18	1	19.00	19	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	2	3	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTGT...........................................................................................................................................................	24	1	18.00	18	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	0	1	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................TTGTGACCGACACTAACG................................................................................................................................................................	18	1	18.00	18	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGCT............................................................................................................................................................	23	1	17.00	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................TCGTTTTTGCGATCACAAATTCT.....................................................................................	23	1	17.00	17	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	1	0	0	0	0	0	2	3	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGCA.............................................................................................................................................................	22	1	16.00	16	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................TCGTTTTTGCGATCACAAATT.......................................................................................	21	1	15.00	15	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	2	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................GTTTGTGACCGACACTAACGGG..............................................................................................................................................................	22	1	15.00	15	0	1	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

--------------------------------------------------------------------------------------ATCCT--------GTGTTGCAGTTTCGGTTTGTGACCGACACTAACGGGTAGTTGA--GGCAT-C----------TCGTAT-TCG---CTGTTTTATACTCGTTTTTGCGATCACAAATTCTGAAATTGCAACGAAAC-GCAACGAAA-----------ATGAAAAG------------------------------TG-CA----T	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..................................................................................................................TTTGTGACCGACACTAACGGGT.............................................................................................................................................................	22	1	148678.00	148678	22084	4	55166	66752	1	4671
..................................................................................................................TTTGTGACCGACACTAACGGGTA............................................................................................................................................................	23	1	22904.00	22904	16301	0	2752	3601	0	250
..................................................................................................................TTTGTGACCGACACTAACGGG..............................................................................................................................................................	21	1	5428.00	5428	3535	0	834	1029	0	30
..................................................................................................................TTTGTGACCGACACTAACGGGA.............................................................................................................................................................	22	1	2633.00	2633	146	0	1010	1411	1	65
...................................................................................................................TTGTGACCGACACTAACGGGT.............................................................................................................................................................	21	1	2619.00	2619	1961	0	283	344	0	31
...................................................................................................................TTGTGACCGACACTAACGGGTA............................................................................................................................................................	22	1	1444.00	1444	1423	0	7	14	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGC.............................................................................................................................................................	22	1	1423.00	1423	42	0	404	966	1	10
..................................................................................................................TTTGTGACCGACACTAACGGGTAT...........................................................................................................................................................	24	1	1275.00	1275	324	0	390	527	0	34
..................................................................................................................TTTGTGACCGACACTAACGGGTAA...........................................................................................................................................................	24	1	1131.00	1131	219	0	382	519	0	11
..................................................................................................................TTTGTGACCGACACTAACGG...............................................................................................................................................................	20	1	869.00	869	386	0	182	289	0	12
..................................................................................................................TTTGTGACCGACACTAACGGGG.............................................................................................................................................................	22	1	580.00	580	37	0	288	249	0	6
..................................................................................................................TTTGTGACCGACACTAACG................................................................................................................................................................	19	1	453.00	453	84	0	178	186	0	5
..................................................................................................................TTTGTGACCGACACTAACGGGTT............................................................................................................................................................	23	1	340.00	340	112	1	107	115	0	5
...................................................................................................................TTGTGACCGACACTAACGGG..............................................................................................................................................................	20	1	337.00	337	333	0	2	2	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTC............................................................................................................................................................	23	1	209.00	209	95	0	53	57	0	4
....................................................................................................................TGTGACCGACACTAACGGGT.............................................................................................................................................................	20	1	156.00	156	110	0	17	28	1	0
..................................................................................................................TTTGTGACCGACACTAACGGT..............................................................................................................................................................	21	1	121.00	121	28	0	37	44	0	12
..................................................................................................................TTTGTGACCGACACTAACGGGTAC...........................................................................................................................................................	24	1	101.00	101	83	0	8	9	0	1
..................................................................................................................TTTGTGACCGACACTAACGGGTTT...........................................................................................................................................................	24	1	79.00	79	17	0	32	28	0	2
....................................................................................................................TGTGACCGACACTAACGGGTA............................................................................................................................................................	21	1	79.00	79	77	0	0	2	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAG...........................................................................................................................................................	24	1	58.00	58	20	0	10	26	0	2
..................................................................................................................TTTGTGACCGACACTAACGT...............................................................................................................................................................	20	1	54.00	54	1	0	19	31	0	3
..................................................................................................................TTTGTGACCGACACTAACGGGTATC..........................................................................................................................................................	25	1	42.00	42	25	0	3	11	0	3
...................................................................................................................TTGTGACCGACACTAACGG...............................................................................................................................................................	19	1	42.00	42	42	0	0	0	0	0
.................................................................................................................GTTTGTGACCGACACTAACGGGT.............................................................................................................................................................	23	1	38.00	38	38	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGA..............................................................................................................................................................	21	1	35.00	35	1	0	16	18	0	0
..................................................................................................................TTTGTGACCGACACTAACGGTC.............................................................................................................................................................	22	1	31.00	31	0	0	4	27	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAAA..........................................................................................................................................................	25	1	31.00	31	5	0	9	17	0	0
...................................................................................................................TTGTGACCGACACTAACGGGTAT...........................................................................................................................................................	23	1	29.00	29	27	0	2	0	0	0
.........................................................................................................................................................................................TCGTTTTTGCGATCACAAATTC......................................................................................	22	1	25.00	25	19	0	1	4	0	1
..................................................................................................................TTTGTGACCGACACTAACGGTA.............................................................................................................................................................	22	1	24.00	24	1	0	7	16	0	0
..................................................................................................................TTTGTGACCGACACTAACGGTG.............................................................................................................................................................	22	1	24.00	24	0	0	7	17	0	0
........................................................................................................................................................................................CTCGTTTTTGCGATCACAAATTCT.....................................................................................	24	1	20.00	20	11	0	4	5	0	0
.....................................................................................................................GTGACCGACACTAACGGGT.............................................................................................................................................................	19	1	19.00	19	15	0	3	1	0	0
.........................................................................................................................................................................................TCGTTTTTGCGATCACAAATT.......................................................................................	21	1	19.00	19	10	0	3	5	0	1
...................................................................................................................TTGTGACCGACACTAACGGGTAA...........................................................................................................................................................	23	1	19.00	19	18	0	0	1	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTCT...........................................................................................................................................................	24	1	18.00	18	2	0	5	10	0	1
.................................................................................................................GTTTGTGACCGACACTAACGGGTA............................................................................................................................................................	24	1	18.00	18	18	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTG............................................................................................................................................................	23	1	18.00	18	11	0	5	2	0	0
...................................................................................................................TTGTGACCGACACTAACGGGTC............................................................................................................................................................	22	1	16.00	16	15	0	1	0	0	0
...................................................................................................................TTGTGACCGACACTAACGGGA.............................................................................................................................................................	21	1	16.00	16	8	0	5	3	0	0
.....................................................................................................................GTGACCGACACTAACGGGTA............................................................................................................................................................	20	1	16.00	16	14	0	2	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGC..............................................................................................................................................................	21	1	15.00	15	3	0	7	5	0	0
..................................................................................................................TTTGTGACCGACACTAACGCTC.............................................................................................................................................................	22	1	13.00	13	0	0	9	4	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTTA...........................................................................................................................................................	24	1	12.00	12	1	0	7	4	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTGT...........................................................................................................................................................	24	1	12.00	12	0	0	8	2	0	2
..................................................................................................................TTTGTGACCGACACTAACGGGCT............................................................................................................................................................	23	1	12.00	12	0	0	7	5	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTCA...........................................................................................................................................................	24	1	12.00	12	1	0	8	3	0	0
...................................................................................................................TTGTGACCGACACTAACGGGTT............................................................................................................................................................	22	1	11.00	11	9	0	2	0	0	0
...................................................................................................................TTGTGACCGACACTAACGGGTAC...........................................................................................................................................................	23	1	11.00	11	10	0	1	0	0	0
...................................................................................................................TTGTGACCGACACTAACGGGC.............................................................................................................................................................	21	1	11.00	11	5	0	1	5	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGGC............................................................................................................................................................	23	1	10.00	10	1	0	6	3	0	0
........................................................................................................................................................................................CTCGTTTTTGCGATCACAAATT.......................................................................................	22	1	10.00	10	7	0	1	2	0	0
........................................................................................................................................................................................CTCGTTTTTGCGATCACAAATTC......................................................................................	23	1	10.00	10	7	0	1	2	0	0
..................................................................................................................TTTGTGACCGACACTAACGGCC.............................................................................................................................................................	22	1	8.00	8	0	0	3	5	0	0

droGri2

AAAGTGAAA--TA---------------------------------------GTGCAAC-------------------GTATACGAGTCCTGT----GCGTGTTGCAGTTTCGGTTTGTGACCGACACTAACGGGTAGTTAAAGGGCATCC----------TCGCATTCTG---CTGGC--TTACTCGTTTTTGCGATCACAAATTCTGAAATTGCAACGAAAA-TCAACAAAACCATAAAA---------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..................................................................................................................TTTGTGACCGACACTAACGGGTA............................................................................................................................................................	23	1	3069.00	3069	2982	87
..................................................................................................................TTTGTGACCGACACTAACGGGT.............................................................................................................................................................	22	1	1292.00	1292	1004	288
..................................................................................................................TTTGTGACCGACACTAACGGG..............................................................................................................................................................	21	1	316.00	316	312	4
...................................................................................................................TTGTGACCGACACTAACGGGTA............................................................................................................................................................	22	1	266.00	266	266	0
...................................................................................................................TTGTGACCGACACTAACGGGT.............................................................................................................................................................	21	1	108.00	108	108	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAT...........................................................................................................................................................	24	1	53.00	53	50	3
...................................................................................................................TTGTGACCGACACTAACGGG..............................................................................................................................................................	20	1	28.00	28	28	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAA...........................................................................................................................................................	24	1	27.00	27	27	0
..................................................................................................................TTTGTGACCGACACTAACGGGTT............................................................................................................................................................	23	1	26.00	26	23	3
....................................................................................................................TGTGACCGACACTAACGGGTA............................................................................................................................................................	21	1	24.00	24	24	0
..................................................................................................................TTTGTGACCGACACTAACGG...............................................................................................................................................................	20	1	21.00	21	20	1
....................................................................................................................TGTGACCGACACTAACGGGT.............................................................................................................................................................	20	1	9.00	9	8	1
..................................................................................................................TTTGTGACCGACACTAACG................................................................................................................................................................	19	1	8.00	8	8	0
.....................................................................................................................GTGACCGACACTAACGGGTA............................................................................................................................................................	20	1	6.00	6	6	0
.................................................................................................................GTTTGTGACCGACACTAACGGGTA............................................................................................................................................................	24	1	5.00	5	5	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAC...........................................................................................................................................................	24	1	4.00	4	4	0
.................................................................................................................GTTTGTGACCGACACTAACGGGT.............................................................................................................................................................	23	1	4.00	4	4	0
..................................................................................................................TTTGTGACCGACACTAACGGGG.............................................................................................................................................................	22	1	4.00	4	4	0
..................................................................................................................TTTGTGACCGACACTAACGGGTTT...........................................................................................................................................................	24	1	3.00	3	3	0
...................................................................................................................TTGTGACCGACACTAACGGGTAT...........................................................................................................................................................	23	1	3.00	3	3	0
...................................................................................................................TTGTGACCGACACTAACGGGTAA...........................................................................................................................................................	23	1	3.00	3	3	0
..................................................................................................................TTTGTGACCGACACTAACGGGA.............................................................................................................................................................	22	1	3.00	3	2	1
..................................................................................................................TTTGTGACCGACACTAACGGGC.............................................................................................................................................................	22	1	3.00	3	1	2
..................................................................................................................TTTGTGACCGACACTAACGGGTG............................................................................................................................................................	23	1	2.00	2	2	0
...................................................................................................................TTGTGACCGACACTAACGG...............................................................................................................................................................	19	1	2.00	2	2	0
..................................................................................................................TTTGTGACCGACACTAACGGGTATA..........................................................................................................................................................	25	1	2.00	2	2	0
.................................................................................................................GTTTGTGACCGACACTAACGGG..............................................................................................................................................................	22	1	2.00	2	2	0
..................................................................................................................TTTGTGACCGACACTAAC.................................................................................................................................................................	18	1	2.00	2	2	0
..................................................................................................................TTTGTGACCGACACTAACGGGTC............................................................................................................................................................	23	1	2.00	2	2	0
........................................................................................................................................................................................CTCGTTTTTGCGATCACAAATTC......................................................................................	23	1	2.00	2	2	0
..................................................................................................................TTTGTGACCGACACTAACGGGTATG..........................................................................................................................................................	25	1	2.00	2	2	0
..........................................................................................................................................................................................CGTTTTTGCGATCACAAATT.......................................................................................	20	1	1.00	1	0	1
......................................................................................................................TGACCGACACTAACGGGT.............................................................................................................................................................	18	1	1.00	1	1	0
..........................................................................................................................................................................................CGTTTTTGCGATCACAAATTCT.....................................................................................	22	1	1.00	1	1	0
..........................................................................................................................................................................................CGTTTTTGCGATCACAAAT........................................................................................	19	1	1.00	1	1	0
.......................................................................................................................GACCGACACTAACGGGTA............................................................................................................................................................	18	1	1.00	1	1	0
..................................................................................................................TTTGTGACCGACACTAACGGGTCA...........................................................................................................................................................	24	1	1.00	1	1	0
.....................................................................................................................GTGACCGACACTAACGGGTAT...........................................................................................................................................................	21	1	1.00	1	1	0
..................................................................................................................TTTGTGACCGACACTAACGGGTCT...........................................................................................................................................................	24	1	1.00	1	0	1
..................................................................................................................TTTGTGACCGACACTAACGGGTAACG.........................................................................................................................................................	26	1	1.00	1	1	0
..................................................................................................................TTTGTGACCGACACTAACGGGTCTG..........................................................................................................................................................	25	1	1.00	1	1	0
......................................................................................................................TGACCGACACTAACGGGTA............................................................................................................................................................	19	1	1.00	1	1	0
........................................................................................................................................................................................CTCGTTTTTGCGATCACAAATC.......................................................................................	22	1	1.00	1	0	1
..................................................................................................................TTTGTGACCGACACTAACGGGTAAG..........................................................................................................................................................	25	1	1.00	1	1	0
...................................................................................................................TTGTGACCGACACTAACGGGTT............................................................................................................................................................	22	1	1.00	1	1	0
.........................................................................................................................................GTTAAAGGGCATCC----------TCGCATTCTG---CT.....................................................................................................................	26	1	1.00	1	1	0
..................................................................................................................TTTGTGACCGACACTAACGGGTACCA.........................................................................................................................................................	26	1	1.00	1	1	0
.....................................................................................................................GTGACCGACACTAACGGGT.............................................................................................................................................................	19	1	1.00	1	1	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAG...........................................................................................................................................................	24	1	1.00	1	1	0
..................................................................................................................TTTGTGACCGACACTAACGGA..............................................................................................................................................................	21	1	1.00	1	1	0
.....................................................................................................................GTGACCGACACTAACGGG..............................................................................................................................................................	18	1	1.00	1	1	0
........................................................................................................................................................................................CTCGTTTTTGCGATCACAAATTCT.....................................................................................	24	1	1.00	1	1	0
...................................................................................................................TTGTGACCGACACTAACGGGTAC...........................................................................................................................................................	23	1	1.00	1	1	0

droAna3

CCT------TT--------------------------------T--TTTAAAAAACAGAA---------------------------------------ATGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTATTTTACAGGACA--------------------TA---CAGGA--TTACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCAAAAA-ACAGCAAA------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..................................................................................................................TTTGTGACCGACACTAACGGGT.............................................................................................................................................................	22	1	187009.00	187009	11553	2	6	44408	3515	127525
..................................................................................................................TTTGTGACCGACACTAACGGGTA............................................................................................................................................................	23	1	19217.00	19217	7978	0	0	3390	169	7680
..................................................................................................................TTTGTGACCGACACTAACGGG..............................................................................................................................................................	21	1	4206.00	4206	2100	0	0	666	41	1399
..................................................................................................................TTTGTGACCGACACTAACGG...............................................................................................................................................................	20	1	3038.00	3038	387	0	0	389	26	2236
..................................................................................................................TTTGTGACCGACACTAACGGGA.............................................................................................................................................................	22	1	2281.00	2281	106	0	0	660	47	1468
..................................................................................................................TTTGTGACCGACACTAACGGGC.............................................................................................................................................................	22	1	1610.00	1610	43	0	0	1127	7	433
..................................................................................................................TTTGTGACCGACACTAACGGGTAA...........................................................................................................................................................	24	1	1484.00	1484	103	0	0	366	16	999
..................................................................................................................TTTGTGACCGACACTAACGGGTAT...........................................................................................................................................................	24	1	1398.00	1398	202	0	1	559	30	606
..................................................................................................................TTTGTGACCGACACTAACG................................................................................................................................................................	19	1	1302.00	1302	177	0	0	606	4	515
..................................................................................................................TTTGTGACCGACACTAACGGT..............................................................................................................................................................	21	1	1251.00	1251	21	0	0	89	4	1137
...................................................................................................................TTGTGACCGACACTAACGGGT.............................................................................................................................................................	21	1	1244.00	1244	1031	0	0	100	8	105
..................................................................................................................TTTGTGACCGACACTAACGGGTT............................................................................................................................................................	23	1	806.00	806	133	0	0	268	7	398
..................................................................................................................TTTGTGACCGACACTAACGGGG.............................................................................................................................................................	22	1	725.00	725	39	0	0	412	4	270
...................................................................................................................TTGTGACCGACACTAACGGGTA............................................................................................................................................................	22	1	679.00	679	664	0	0	7	0	8
..................................................................................................................TTTGTGACCGACACTAACGT...............................................................................................................................................................	20	1	433.00	433	5	0	0	99	34	295
........................................................................................................................................................................................CTCGTTTTTGCGATCACAAATC.......................................................................................	22	1	240.00	240	10	0	0	8	3	219
...................................................................................................................TTGTGACCGACACTAACGGG..............................................................................................................................................................	20	1	172.00	172	169	0	0	2	0	1
....................................................................................................................TGTGACCGACACTAACGGGT.............................................................................................................................................................	20	1	95.00	95	62	0	0	14	0	19
..................................................................................................................TTTGTGACCGACACTAACGGGTATT..........................................................................................................................................................	25	1	94.00	94	12	0	0	28	4	50
..................................................................................................................TTTGTGACCGACACTAACGGGTC............................................................................................................................................................	23	1	88.00	88	9	0	0	58	0	21
..................................................................................................................TTTGTGACCGACACTAACGGGTAC...........................................................................................................................................................	24	1	83.00	83	57	0	0	15	0	11
..................................................................................................................TTTGTGACCGACACTAACGGGTAG...........................................................................................................................................................	24	1	81.00	81	20	0	0	13	0	48
........................................................................................................................................................................................CTCGTTTTTGCGATCACAAATCCT.....................................................................................	24	1	74.00	74	26	0	0	10	2	36
..................................................................................................................TTTGTGACCGACACTAACGGA..............................................................................................................................................................	21	1	71.00	71	1	0	0	22	0	48
........................................................................................................................................................................................CTCGTTTTTGCGATCACAAATCC......................................................................................	23	1	68.00	68	20	0	0	7	0	41
..................................................................................................................TTTGTGACCGACACTAACGGTA.............................................................................................................................................................	22	1	37.00	37	6	0	0	6	0	25
....................................................................................................................TGTGACCGACACTAACGGGTA............................................................................................................................................................	21	1	37.00	37	36	0	0	1	0	0
...................................................................................................................TTGTGACCGACACTAACGG...............................................................................................................................................................	19	1	36.00	36	35	0	0	1	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAAA..........................................................................................................................................................	25	1	32.00	32	5	0	0	6	0	21
..................................................................................................................TTTGTGACCGACACTAACGGGTG............................................................................................................................................................	23	1	26.00	26	9	0	0	8	0	9
.................................................................................................................TTTTGTGACCGACACTAACGGGT.............................................................................................................................................................	23	1	21.00	21	14	0	0	4	0	3
..................................................................................................................TTTGTGACCGACACTAACGGGTTA...........................................................................................................................................................	24	1	20.00	20	1	0	0	5	0	14
..................................................................................................................TTTGTGACCGACACTAACGGC..............................................................................................................................................................	21	1	19.00	19	1	0	0	9	0	9
......................................................................................................................TGACCGACACTAACGGGT.............................................................................................................................................................	18	1	19.00	19	3	0	0	0	0	16
..................................................................................................................TTTGTGACCGACACTAACGGTC.............................................................................................................................................................	22	1	18.00	18	0	0	0	16	0	2
...................................................................................................................TTGTGACCGACACTAACGGGTAT...........................................................................................................................................................	23	1	18.00	18	16	0	0	2	0	0
..................................................................................................................TTTGTGACCGACACTAACGGTG.............................................................................................................................................................	22	1	17.00	17	0	0	0	17	0	0
..................................................................................................................TTTGTGACCGACACTAAC.................................................................................................................................................................	18	1	16.00	16	1	0	0	8	0	7
...................................................................................................................TTGTGACCGACACTAACGGGTAA...........................................................................................................................................................	23	1	16.00	16	13	0	0	2	0	1
..................................................................................................................TTTGTGACCGACACTAACT................................................................................................................................................................	19	1	16.00	16	0	0	0	3	0	13
...................................................................................................................TTGTGACCGACACTAACGGGTT............................................................................................................................................................	22	1	15.00	15	15	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGTT..............................................................................................................................................................	21	1	15.00	15	0	0	0	5	0	10
..................................................................................................................TTTGTGACCGACACTAACGGGCT............................................................................................................................................................	23	1	15.00	15	1	0	0	13	0	1
..................................................................................................................TTTGTGACCGACACTAACGGCC.............................................................................................................................................................	22	1	14.00	14	0	0	0	14	0	0
..................................................................................................................TTTGTGACCGACACTAACGGCA.............................................................................................................................................................	22	1	13.00	13	0	0	0	9	0	4
........................................................................................................................................................................................CTCGTTTTTGCGATCACAAATCCTT....................................................................................	25	1	12.00	12	4	0	0	0	0	8
.....................................................................................................................GTGACCGACACTAACGGGT.............................................................................................................................................................	19	1	12.00	12	5	0	0	0	1	6
........................................................................................................................................................................................CTCGTTTTTGCGATCACAAAT........................................................................................	21	1	11.00	11	0	0	0	0	0	11
...................................................................................................................TTGTGACCGACACTAACGGGA.............................................................................................................................................................	21	1	11.00	11	7	0	0	0	0	4
..................................................................................................................TTTGTGACCGACACTAACGGGTTG...........................................................................................................................................................	24	1	10.00	10	3	0	0	1	0	6
....................................................................................................................TGTGACCGACACTAACGGG..............................................................................................................................................................	19	1	9.00	9	9	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGAA.............................................................................................................................................................	22	1	8.00	8	1	0	0	3	0	4
.....................................................................................................................GTGACCGACACTAACGGGTA............................................................................................................................................................	20	1	8.00	8	8	0	0	0	0	0
...................................................................................................................TTGTGACCGACACTAACG................................................................................................................................................................	18	1	8.00	8	8	0	0	0	0	0

droBip1

TGT------T------------------------------------TT-TGA----------------------------AGACAGA------------ATGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTATTTTACAGGAT--------------------TTA---CAGGA--TTACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCAAAAA-ACAGCAAAA-----------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GAA-----A--TA--------------------GTAAAAAGTT----------------------------------------CCTATCCTTTTTTAACGTGTTGCTGTTTCGCTTTGTGACCGACACTAACGGGTAATTGTTTGGCCTTCT-T--AGCCG---TT--CCG---CTGGA--TTACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCTAAGA-GCAGCATTCAAGTGGAACTAGTGAACG----------------------------------TA----T	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ATT---------TGC-CCAGGCTAAAGCCAGTGATCAGGAGTT----------------------------------------CCTATCCT--------GTGTTGTTGTTTCGTTTTGTGACCGACACTAACGGGTAATTGATCGGCCCCCAAA--AGCCG---CCCACCG---CAGGA--TTACTCGTTTTTGCGATCACAAATCCTGAAATTTCAGCAAAGA-GCAGCAA-------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GAAAT------CACCTCA-TGGTGCTTCTGGTGATCAAGAGTT---------------------------------------CCGAATCCT--------GTGCTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGATTGGCCC--------------------CG---CAGGA--TTACTCGTTTCTGCGATCACAAATCATGAAATTGCAGCCAAAA-GCAACAAAATCGTGGAACCAGTGAAAA-----------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

C----------------------------------------------------------------------------------CAAATCCT--------GTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTCGGCT--------------------CCG---CAGGA--TTACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAAA-GCAGCAAAATCGTGGAACCAGTGAAAAA----------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CAC-----------C---------------------------T----C-CAA----------------------------ACCCACATCCT--------GTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTCCGGCCCCCAGG--AGCCG---CC--CCT---CAGGA--TTACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCAAAGA-GCAGCAAAGTCCTGGAACCAGTGAAAA-----------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATTCCGAAA--CACCTCAAATGGAAAACAAGTTACCAAGAGTT---------------------------------CCGAATCCGAATCCT--------GTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTCGGCCCCCAAA--AGCCG---CC--CCG---CAGGA--TTACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCAAAGA-GCAGCAAAATCAAGGAACCAGTG---------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AT---------CACCTCA-GGGTCCAACTAATTATCAAGAGTT---------------------------------------CCAAATCCT--------GTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTATGGCCTAAA-AGGAGCCG---CT--CAC---CAGGA--TTACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAAA-GCAGCTAAATCAGGGAACTAGTG---------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

GCA----------TTTTAATTTTAATATTGGT-------AGTT---------------------------------TTGGTGACGAATCCT--------GTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGGCCGC------------------------CAGGA--TTACTCGTTTTTGCGATCACAAATTATGAAATTGCAGCAAAAC-TCAACGAAATTGTGGAACCAGTAAAAA------------------TAG-ATA-GAAAATAATATG---	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................................................................................................................TTTGTGACCGACACTAACGGGT.............................................................................................................................................................	22	1	776433.00	776433	0	0	0	0	122	9	0	0	0	0	0	0	0	0	97	5	1	401	40	0	1	27	140	2845	0	57	4	27	379	279	14354	10338	37	34	0	90	203	39	19	39	40	36	98	13	137	26	20	32	52	28	58	21	38	0	0	0	100	96	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	467	13	0	0	0	0	0	0	0	11	0	831	1	3	797	148	831	1	0	2	7	5207	73	0	1	9	0	11	22	37	0	9	0	2	114	2077	16764	37825	162	5903	100	10836	10822	63902	902	8697	731	8378	9825	0	0	2	7	22	16	10	12	18	0	0	1	0	0	0	14	21	18	14	21	1328	9	22	15	47	0	0	0	0	0	3	5	2	0	28	7	22283	27900	0	19465	47	29	19669	12095	315	15737	435	18755	70	27863	1390	84	4	26	1	0	63335	2947	111	2831	54	0	3	3	1965	2	2600	13	0	0	0	0	0	116	187	0	0	3	2	0	0	0	1	0	378	2793	2292	1691	113	209	298	477	324	445	50	621	1	0	0	1	5	2	0	0	5	1	2	2470	21863	535	1	0	31	8769	24810	28	4860	6	3	11	2	7	8857	7	23	0	1	3	2	1	1	34	6	3	3	0	134	62	544	2400	172	806	186	979	147	989	0	2	1	2	45	31335	38406	28820	44985	10	10	1622	655	11	651	178	519	65	122	5168	1	4823	8267	26	171	48	257	554	4	5	0	0	0	1	0	2	0	1	1	3579	43721	5078	1435	3861	2387	3173	15	0	24	2	3	11
..................................................................................................................TTTGTGACCGACACTAACGGGTA............................................................................................................................................................	23	1	375656.00	375656	0	0	0	0	310	40	0	0	0	0	3	0	1	1	567	10	0	160	76	0	2	13	37	2413	0	4	0	22	415	363	11990	9624	44	34	0	10	23	7	4	7	4	8	6	4	11	4	2	2	3	5	10	7	8	0	0	0	191	280	46	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	486	19	0	1	6	0	0	0	0	54	2	1444	16	2	2211	346	1605	2	0	35	33	7067	133	5	3	35	6	30	40	92	1	17	3	9	237	728	16331	14215	173	5915	65	7049	7018	42471	539	6876	657	6747	8008	0	0	0	0	13	18	19	26	20	0	0	0	0	0	0	2	7	1	4	2	206	5	0	7	5	0	0	0	0	0	0	0	0	0	1	0	22489	29756	0	18728	61	29	10605	13881	473	15685	527	14502	131	16400	1930	12	0	3	0	0	33476	495	29	533	21	1	0	0	324	3	447	6	0	0	0	0	0	41	51	0	0	0	0	0	0	0	0	0	171	1308	499	305	124	240	231	452	361	505	105	570	0	0	0	0	58	39	0	0	3	1	0	454	1696	38	1	1	8	2720	5819	4	1176	0	0	2	1	0	1103	1	4	0	1	0	0	0	0	6	1	2	2	0	53	10	45	180	12	32	23	79	16	87	0	0	0	0	5	1842	3507	2514	3813	1	1	365	200	1	66	31	62	11	18	317	0	499	807	27	18	3	42	87	1	0	0	0	0	0	0	0	0	0	0	303	3164	216	98	235	163	210	0	0	1	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAT...........................................................................................................................................................	24	1	71134.00	71134	0	0	0	0	124	4	0	0	0	0	0	0	0	0	119	6	0	3	18	0	0	2	0	6	0	1	0	0	0	0	0	0	0	0	0	0	1	2	0	0	2	2	0	0	4	0	0	0	0	2	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	154	11	0	0	0	0	0	0	0	1	1	328	1	1	964	67	288	0	0	0	5	2153	17	0	0	17	6	8	11	20	0	0	1	4	46	35	3805	838	12	272	3	536	363	2117	31	1871	126	1708	2039	0	0	0	0	1	2	0	5	1	0	0	0	0	0	0	1	1	2	1	0	49	1	0	0	5	0	0	0	0	0	0	0	0	0	0	0	7087	8727	0	4906	4	8	1624	2885	56	3173	40	4134	6	5885	130	17	0	0	0	0	4851	386	3	218	0	0	0	0	139	2	159	0	0	0	0	0	0	5	10	0	0	0	1	0	0	0	0	0	13	167	109	50	5	23	27	41	20	48	11	40	0	0	0	0	25	21	0	0	1	0	0	51	291	14	0	0	0	158	527	1	75	0	0	0	0	0	179	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	7	34	8	14	2	19	6	29	0	0	0	0	2	1060	1383	1287	1451	0	0	94	33	0	17	6	11	1	1	108	0	44	87	1	0	0	6	6	0	0	0	0	1	0	0	0	0	0	0	45	622	41	14	61	18	30	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGG..............................................................................................................................................................	21	1	66369.00	66369	0	0	0	0	31	2	0	0	0	0	0	0	0	0	115	22	30	99	9	0	0	0	1	1916	0	0	0	7	82	54	2665	1691	23	10	0	3	2	1	0	0	0	0	4	0	5	2	0	0	0	1	0	1	0	0	0	0	40	93	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	104	1	0	0	0	0	0	0	0	0	0	110	0	0	272	17	76	0	0	0	1	792	8	0	0	4	0	1	1	4	0	1	1	0	8	64	3565	898	47	167	4	1131	397	1590	31	1727	297	1092	1846	1	2	2	4	0	4	2	0	5	2	0	0	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	4096	4848	0	2936	17	8	2942	2017	60	2935	92	4352	19	5508	372	0	0	0	0	0	9103	60	0	39	0	0	0	0	34	0	27	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	17	37	41	19	3	8	23	51	19	18	5	26	1	0	0	1	5	3	0	0	0	0	0	30	286	11	0	0	0	330	1410	2	179	0	0	1	0	0	122	0	0	0	0	0	0	0	0	0	0	0	0	0	4	3	0	8	0	3	0	7	2	6	0	0	0	0	0	345	363	326	890	1	0	19	9	0	11	0	3	1	0	44	0	46	92	0	0	1	5	4	0	0	0	0	0	0	0	0	0	0	0	23	726	43	12	20	10	16	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAA...........................................................................................................................................................	24	1	49656.00	49656	0	0	0	0	124	5	0	0	0	0	0	0	0	0	32	2	0	10	34	0	1	1	1	3	0	0	0	4	36	53	2507	2144	9	5	0	1	8	0	0	0	0	1	0	1	3	0	0	0	0	1	0	0	0	0	0	0	299	246	59	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	153	8	0	0	6	0	1	0	0	5	1	365	0	0	1118	43	205	0	0	0	7	2013	13	0	0	10	0	20	7	15	0	1	1	2	36	12	2218	208	23	234	2	292	158	901	11	1168	147	976	1201	0	0	0	0	0	2	0	2	2	0	0	0	0	0	0	0	0	0	0	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4128	5211	0	3304	8	4	1042	2491	58	2730	41	2092	2	3256	123	0	0	0	0	0	2948	136	2	49	0	2	0	0	51	0	46	0	0	0	0	0	0	7	4	0	0	0	0	0	19	0	0	0	16	115	34	15	5	5	6	7	6	8	2	12	0	0	0	0	37	26	0	0	0	0	0	37	204	6	0	0	0	259	489	1	82	0	0	0	0	0	148	0	1	0	0	0	0	0	0	1	0	0	0	0	3	1	3	31	3	10	4	13	2	15	0	0	0	0	0	482	743	548	690	0	0	40	14	0	10	7	4	0	0	35	0	23	56	1	2	0	4	5	0	0	0	0	0	0	0	0	0	0	0	27	328	23	10	28	10	13	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGG...............................................................................................................................................................	20	1	11980.00	11980	0	0	0	0	7	0	0	0	0	0	0	0	0	0	2	3	108	46	0	0	0	0	0	123	0	0	0	0	1	0	8	3	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	12	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16	0	0	0	0	0	0	0	0	0	0	11	0	0	18	2	5	0	0	0	0	174	1	0	0	0	0	0	2	0	0	0	0	0	0	3	984	84	13	15	0	187	26	76	2	396	269	283	384	8	0	2	2	0	0	0	0	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	761	1163	0	546	2	6	230	386	16	594	63	660	5	679	43	0	0	0	0	0	793	6	0	10	0	0	0	0	5	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	3	1	0	0	7	1	1	0	4	0	0	0	0	4	0	0	0	0	0	0	1	76	3	0	0	0	74	733	2	59	0	0	0	0	0	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	1	1	0	1	0	0	0	0	2	189	194	251	411	0	0	7	1	1	2	0	1	0	0	2	0	2	4	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	10	585	22	2	4	5	6	0	0	1	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTT............................................................................................................................................................	23	1	10804.00	10804	0	0	0	0	5	0	0	0	0	0	0	0	0	0	4	0	0	25	1	0	0	0	0	70	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21	0	0	0	0	0	1	0	0	0	0	92	0	0	15	1	9	0	0	0	0	85	13	0	0	0	0	0	0	0	0	0	0	0	1	9	456	119	5	36	0	65	22	150	1	229	17	242	263	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	866	882	0	608	0	0	640	226	10	274	11	993	8	1368	66	0	0	0	0	0	1883	14	0	4	0	0	0	0	10	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	13	4	1	0	3	2	4	2	4	0	4	0	0	0	0	8	3	0	0	0	0	0	18	72	4	0	0	0	50	170	0	20	0	0	0	0	0	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	1	0	0	0	0	0	0	0	0	86	111	109	159	0	0	1	2	0	5	0	0	0	0	2	0	5	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	65	5	2	1	2	4	0	0	0	0	0	0
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..................................................................................................................TTTGTGACCGACACTAACGGGTATA..........................................................................................................................................................	25	1	463.00	463	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	7	0	2	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	11	0	10	0	9	9	63	1	5	5	8	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22	45	0	17	0	0	8	18	0	18	0	33	1	39	8	0	0	0	0	0	34	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	6	3	0	0	0	0	0	0	1	0	0	0	0	3	7	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	2	4	9	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................CTCGTTTTTGCGATCACAAATTAT.....................................................................................	24	1	344.00	344	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	5	0	0	15	1	3	0	0	1	0	20	0	0	0	0	0	0	0	1	0	0	0	0	0	0	6	1	0	0	0	4	0	1	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41	34	0	57	0	0	1	11	6	9	30	12	10	6	21	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	3	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGA..............................................................................................................................................................	21	1	343.00	343	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20	1	0	0	0	12	1	7	0	3	1	7	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17	24	0	9	0	0	9	13	1	19	1	29	0	17	0	0	0	0	0	0	71	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	2	14	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	2	3	11	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGCT............................................................................................................................................................	23	1	313.00	313	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	7	0	2	0	0	1	1	0	12	0	11	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	76	58	0	39	0	0	2	3	0	1	0	13	0	13	3	0	0	0	0	0	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	3	12	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	2	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................TGTGACCGACACTAACGGGT.............................................................................................................................................................	20	1	301.00	301	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	6	8	0	1	0	2	0	12	1	7	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	9	12	0	11	0	0	16	21	0	26	2	4	0	2	0	0	0	0	0	0	49	0	0	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	5	0	0	0	0	6	6	0	2	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	11	9	18	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	14	2	0	1	0	1	0	0	0	0	0	0
.........................................................................................................................................ATTGTTTGGCCGC------------------------CAGGA--TTA.............................................................................................................	21	1	278.00	278	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	5	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	1	1	1	0	6	0	1	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17	14	0	15	2	0	3	29	2	10	11	10	10	30	50	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	3	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGC..............................................................................................................................................................	21	1	233.00	233	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	1	0	1	0	0	1	5	0	8	0	3	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31	46	0	22	0	0	7	5	0	7	0	6	0	0	0	0	0	0	0	0	46	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	1	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGTA.............................................................................................................................................................	22	1	232.00	232	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	6	0	1	0	2	4	19	0	5	0	2	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	14	0	2	0	0	2	35	1	56	3	2	0	1	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	3	6	13	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0

droSim2

A----------------------------------------------------------------------------------CAAATCCT--------GTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGGTCAC------------------------CAGGA--TTACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAAC-GCAACAAAGTCGTGGAACTAGTGAAAA-----------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..................................................................................................................TTTGTGACCGACACTAACGGGT.............................................................................................................................................................	22	1	93609.00	93609	79046	5456	160	2767	0	0	5069	732	21	6	153	7	0	192	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTA............................................................................................................................................................	23	1	18599.00	18599	13112	608	25	2274	0	0	1889	290	23	20	58	6	3	291	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGC.............................................................................................................................................................	22	1	10178.00	10178	9674	482	13	6	0	0	3	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGG..............................................................................................................................................................	21	1	8557.00	8557	7169	492	21	305	0	0	468	44	2	0	6	0	0	50	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGG.............................................................................................................................................................	22	1	4327.00	4327	3959	343	7	5	0	0	11	1	0	0	0	0	0	1	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGG...............................................................................................................................................................	20	1	2458.00	2458	2225	81	6	31	0	0	80	20	0	0	0	0	0	15	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTT............................................................................................................................................................	23	1	997.00	997	897	60	3	20	0	0	11	0	0	0	1	0	0	5	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAT...........................................................................................................................................................	24	1	738.00	738	606	15	0	32	0	0	22	4	1	0	6	0	0	52	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGA.............................................................................................................................................................	22	1	583.00	583	465	37	1	20	0	0	50	9	0	0	0	0	0	1	0	0	0
..................................................................................................................TTTGTGACCGACACTAACG................................................................................................................................................................	19	1	577.00	577	543	15	0	14	0	0	2	1	0	0	1	0	0	1	0	0	0
...................................................................................................................TTGTGACCGACACTAACGGGT.............................................................................................................................................................	21	1	329.00	329	97	5	0	224	0	0	3	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAA...........................................................................................................................................................	24	1	312.00	312	151	5	0	56	0	0	50	16	1	0	3	0	0	30	0	0	0
...................................................................................................................TTGTGACCGACACTAACGGGTA............................................................................................................................................................	22	1	174.00	174	12	1	0	158	0	0	2	0	0	0	0	0	0	1	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGAC.............................................................................................................................................................	22	1	170.00	170	166	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAC...........................................................................................................................................................	24	1	160.00	160	136	5	0	13	0	0	1	2	0	0	1	0	0	2	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTC............................................................................................................................................................	23	1	142.00	142	134	3	0	2	0	0	3	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGA..............................................................................................................................................................	21	1	106.00	106	104	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTG............................................................................................................................................................	23	1	89.00	89	82	4	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGT...............................................................................................................................................................	20	1	84.00	84	79	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAAC.................................................................................................................................................................	18	1	74.00	74	70	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTTT...........................................................................................................................................................	24	1	61.00	61	53	1	0	4	0	0	2	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................CTCGTTTTTGCGATCACAAATC.......................................................................................	22	1	57.00	57	44	1	0	10	0	0	1	0	0	0	0	1	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTATA..........................................................................................................................................................	25	1	53.00	53	49	0	1	0	0	0	2	0	0	0	0	0	0	1	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGT..............................................................................................................................................................	21	1	52.00	52	47	2	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................ATTGTTTGGTCAC------------------------CAGGA--TT..............................................................................................................	20	1	47.00	47	39	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAG...........................................................................................................................................................	24	1	42.00	42	35	2	0	2	0	0	3	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................ATTGTTTGGTCAC------------------------CAGGA--TTA.............................................................................................................	21	1	34.00	34	29	3	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................TTGTGACCGACACTAACGGG..............................................................................................................................................................	20	1	29.00	29	3	1	0	24	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................TGTGACCGACACTAACGGGT.............................................................................................................................................................	20	1	27.00	27	14	1	0	11	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................TTGTGACCGACACTAACGGGC.............................................................................................................................................................	21	1	21.00	21	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGC..............................................................................................................................................................	21	1	18.00	18	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................TGACCGACACTAACGGGT.............................................................................................................................................................	18	1	16.00	16	15	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAAA..........................................................................................................................................................	25	1	15.00	15	6	1	0	2	0	0	2	0	0	0	1	0	0	3	0	0	0
...................................................................................................................TTGTGACCGACACTAACGGGG.............................................................................................................................................................	21	1	14.00	14	9	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................TGTGACCGACACTAACGGGTA............................................................................................................................................................	21	1	13.00	13	2	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAAC..........................................................................................................................................................	25	1	13.00	13	12	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTATG..........................................................................................................................................................	25	1	13.00	13	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGAT............................................................................................................................................................	23	1	11.00	11	10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTACA..........................................................................................................................................................	25	1	9.00	9	8	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTATC..........................................................................................................................................................	25	1	8.00	8	7	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGC...............................................................................................................................................................	20	1	8.00	8	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACT................................................................................................................................................................	19	1	8.00	8	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................CTCGTTTTTGCGATCACAAATCA......................................................................................	23	1	7.00	7	1	0	0	5	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................TTTTGTGACCGACACTAACGGGT.............................................................................................................................................................	23	1	7.00	7	2	1	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAAT..........................................................................................................................................................	25	1	6.00	6	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGGT............................................................................................................................................................	23	1	5.00	5	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGCC..............................................................................................................................................................	21	1	5.00	5	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................ATTGTTTGGTCAC------------------------CAGGA--T...............................................................................................................	19	1	5.00	5	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGA...............................................................................................................................................................	20	1	4.00	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTACC..........................................................................................................................................................	25	1	4.00	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGCT............................................................................................................................................................	23	1	4.00	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGTA.............................................................................................................................................................	22	1	4.00	4	1	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0
....................................................................................................................TGTGACCGACACTAACGGG..............................................................................................................................................................	19	1	4.00	4	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................TTGTGACCGACACTAACGGGTT............................................................................................................................................................	22	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................GTGACCGACACTAACGGGT.............................................................................................................................................................	19	1	3.00	3	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTCT...........................................................................................................................................................	24	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................TTGTGACCGACACTAACGGGA.............................................................................................................................................................	21	1	3.00	3	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGTAT............................................................................................................................................................	23	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................TTGTGACCGACACTAACG................................................................................................................................................................	18	1	3.00	3	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................TTGTGACCGACACTAACGGGTAA...........................................................................................................................................................	23	1	3.00	3	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................TCGTTTTTGCGATCACAAATC.......................................................................................	21	1	3.00	3	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................GTGACCGACACTAACGGGTA............................................................................................................................................................	20	1	3.00	3	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TTACTCGTTTTTGCGATCACA...........................................................................................	21	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTCC...........................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................TGACCGACACTAACGGGTA............................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

A----------------------------------------------------------------------------------CAAATCCT--------GTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGATCAC------------------------CAGGA--TTACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAAC-GCAACAAATATATAGAAAATATATAGA----------------------------AAATAATAAGTTT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..................................................................................................................TTTGTGACCGACACTAACGGGT.............................................................................................................................................................	22	1	150177.00	150177	16190	11661	141	122185
..................................................................................................................TTTGTGACCGACACTAACGGGTA............................................................................................................................................................	23	1	29058.00	29058	16403	666	22	11967
..................................................................................................................TTTGTGACCGACACTAACGGG..............................................................................................................................................................	21	1	2414.00	2414	1568	34	3	809
..................................................................................................................TTTGTGACCGACACTAACGGGTAT...........................................................................................................................................................	24	1	2220.00	2220	604	210	3	1403
..................................................................................................................TTTGTGACCGACACTAACGGGA.............................................................................................................................................................	22	1	1832.00	1832	108	152	0	1572
..................................................................................................................TTTGTGACCGACACTAACGGGTAA...........................................................................................................................................................	24	1	1776.00	1776	295	75	5	1401
...................................................................................................................TTGTGACCGACACTAACGGGT.............................................................................................................................................................	21	1	1569.00	1569	1151	23	0	395
...................................................................................................................TTGTGACCGACACTAACGGGTA............................................................................................................................................................	22	1	1166.00	1166	1128	0	0	38
..................................................................................................................TTTGTGACCGACACTAACGG...............................................................................................................................................................	20	1	754.00	754	165	25	1	563
..................................................................................................................TTTGTGACCGACACTAACGGGC.............................................................................................................................................................	22	1	689.00	689	36	52	0	601
..................................................................................................................TTTGTGACCGACACTAACGGGTT............................................................................................................................................................	23	1	612.00	612	315	26	0	271
..................................................................................................................TTTGTGACCGACACTAACG................................................................................................................................................................	19	1	482.00	482	59	0	0	423
..................................................................................................................TTTGTGACCGACACTAACGGT..............................................................................................................................................................	21	1	333.00	333	68	6	1	258
..................................................................................................................TTTGTGACCGACACTAACGGGG.............................................................................................................................................................	22	1	291.00	291	29	19	0	243
..................................................................................................................TTTGTGACCGACACTAACGGGTAC...........................................................................................................................................................	24	1	166.00	166	137	1	0	28
....................................................................................................................TGTGACCGACACTAACGGGT.............................................................................................................................................................	20	1	132.00	132	65	4	0	63
..................................................................................................................TTTGTGACCGACACTAACGGGTTT...........................................................................................................................................................	24	1	131.00	131	30	20	0	81
........................................................................................................................................................................................CTCGTTTTTGCGATCACAAATC.......................................................................................	22	1	126.00	126	47	1	0	78
...................................................................................................................TTGTGACCGACACTAACGGG..............................................................................................................................................................	20	1	107.00	107	106	0	0	1
........................................................................................................................................................................................CTCGTTTTTGCGATCACAAATCA......................................................................................	23	1	84.00	84	32	0	1	51
..................................................................................................................TTTGTGACCGACACTAACGT...............................................................................................................................................................	20	1	83.00	83	17	10	0	56
....................................................................................................................TGTGACCGACACTAACGGGTA............................................................................................................................................................	21	1	72.00	72	66	1	0	5
...................................................................................................................TTGTGACCGACACTAACGGGTAT...........................................................................................................................................................	23	1	51.00	51	45	2	0	4
..................................................................................................................TTTGTGACCGACACTAACGGTA.............................................................................................................................................................	22	1	48.00	48	34	0	0	14
.....................................................................................................................................................................................TTACTCGTTTTTGCGATCACA...........................................................................................	21	1	43.00	43	26	0	0	17
..................................................................................................................TTTGTGACCGACACTAACGGGTAG...........................................................................................................................................................	24	1	39.00	39	19	1	0	19
..................................................................................................................TTTGTGACCGACACTAACGGGTAAA..........................................................................................................................................................	25	1	38.00	38	4	3	0	31
..................................................................................................................TTTGTGACCGACACTAACGGGTC............................................................................................................................................................	23	1	38.00	38	17	1	0	20
.........................................................................................................................................................................................TCGTTTTTGCGATCACAAATCA......................................................................................	22	1	35.00	35	17	0	0	18
...................................................................................................................TTGTGACCGACACTAACGGGG.............................................................................................................................................................	21	1	35.00	35	35	0	0	0
...................................................................................................................TTGTGACCGACACTAACGGGTAA...........................................................................................................................................................	23	1	32.00	32	26	0	0	6
.........................................................................................................................................ATTGTTTGATCAC------------------------CAGGA--TTA.............................................................................................................	21	1	31.00	31	8	5	0	18
........................................................................................................................................................................................CTCGTTTTTGCGATCACAAATCAT.....................................................................................	24	1	30.00	30	25	1	1	3
..................................................................................................................TTTGTGACCGACACTAACGGA..............................................................................................................................................................	21	1	23.00	23	7	0	0	16
..................................................................................................................TTTGTGACCGACACTAACGGGTG............................................................................................................................................................	23	1	22.00	22	15	1	0	6
...................................................................................................................TTGTGACCGACACTAACGGGTT............................................................................................................................................................	22	1	21.00	21	20	0	0	1
.........................................................................................................................................ATTGTTTGATCAC------------------------CAGGA--TT..............................................................................................................	20	1	20.00	20	0	2	0	18
......................................................................................................................TGACCGACACTAACGGGT.............................................................................................................................................................	18	1	18.00	18	2	0	0	16
..................................................................................................................TTTGTGACCGACACTAACGGGTGT...........................................................................................................................................................	24	1	17.00	17	0	2	0	15
..................................................................................................................TTTGTGACCGACACTAACGTA..............................................................................................................................................................	21	1	17.00	17	10	0	0	7
..................................................................................................................TTTGTGACCGACACTAACGGGTATA..........................................................................................................................................................	25	1	16.00	16	3	0	0	13
........................................................................................................................................................................................CTCGTTTTTGCGATCACAAAT........................................................................................	21	1	13.00	13	5	0	0	8
...................................................................................................................TTGTGACCGACACTAACGGGA.............................................................................................................................................................	21	1	13.00	13	7	0	0	6
..................................................................................................................TTTGTGACCGACACTAACGGGTAAT..........................................................................................................................................................	25	1	12.00	12	1	0	0	11
.....................................................................................................................................................................................TTACTCGTTTTTGCGATCAC............................................................................................	20	1	11.00	11	3	0	0	8
.................................................................................................................TTTTGTGACCGACACTAACGGGTA............................................................................................................................................................	24	1	11.00	11	11	0	0	0
.........................................................................................................................................................................................TCGTTTTTGCGATCACAAATC.......................................................................................	21	1	10.00	10	6	0	0	4
...................................................................................................................TTGTGACCGACACTAACGGGTAC...........................................................................................................................................................	23	1	10.00	10	10	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGAA.............................................................................................................................................................	22	1	9.00	9	1	0	0	8
.........................................................................................................................................................................................TCGTTTTTGCGATCACAAATCAT.....................................................................................	23	1	9.00	9	9	0	0	0
...................................................................................................................TTGTGACCGACACTAACGG...............................................................................................................................................................	19	1	8.00	8	8	0	0	0
.................................................................................................................TTTTGTGACCGACACTAACGGGT.............................................................................................................................................................	23	1	8.00	8	6	0	0	2
...................................................................................................................TTGTGACCGACACTAACG................................................................................................................................................................	18	1	8.00	8	7	0	0	1
....................................................................................................................TGTGACCGACACTAACGGG..............................................................................................................................................................	19	1	7.00	7	6	0	0	1
.....................................................................................................................GTGACCGACACTAACGGGTA............................................................................................................................................................	20	1	7.00	7	6	0	0	1
.....................................................................................................................GTGACCGACACTAACGGGT.............................................................................................................................................................	19	1	7.00	7	6	0	0	1
..................................................................................................................TTTGTGACCGACACTAACGGTAT............................................................................................................................................................	23	1	7.00	7	4	1	0	2
..................................................................................................................TTTGTGACCGACACTAACGGGTACA..........................................................................................................................................................	25	1	6.00	6	1	0	0	5
..................................................................................................................TTTGTGACCGACACTAACGGGTAAC..........................................................................................................................................................	25	1	5.00	5	1	0	0	4
....................................................................................................TGTTGCAGTTTCGTTTTGTGA............................................................................................................................................................................	21	1	5.00	5	0	1	0	4
..................................................................................................................TTTGTGACCGACACTAAC.................................................................................................................................................................	18	1	5.00	5	5	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTATC..........................................................................................................................................................	25	1	5.00	5	1	1	0	3
..................................................................................................................TTTGTGACCGACACTAACGGGTAATT.........................................................................................................................................................	26	1	5.00	5	1	0	0	4
....................................................................................................................TGTGACCGACACTAACGGGTAT...........................................................................................................................................................	22	1	4.00	4	3	1	0	0
.........................................................................................................................................................................................TCGTTTTTGCGATCACAAAT........................................................................................	20	1	4.00	4	2	0	0	2
................................................................................................................GTTTTGTGACCGACACTAACGGGT.............................................................................................................................................................	24	1	4.00	4	4	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTCT...........................................................................................................................................................	24	1	4.00	4	1	0	0	3
..................................................................................................................TTTGTGACCGACACTAACGGGTACC..........................................................................................................................................................	25	1	3.00	3	2	0	0	1
....................................................................................................................TGTGACCGACACTAACGGGTAA...........................................................................................................................................................	22	1	3.00	3	1	0	0	2

droYak3

AAA--------CA------------------------------C--CTTTAAGTGCAGCTAGTTAGTGTTTGAT-T-TTATGCCGAATCCT--------GTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGGTCGC------------------------CAGGA--TTACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAAC-GCAACAAAGTCGTGAAACCAGTGAATAA----------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..................................................................................................................TTTGTGACCGACACTAACGGGT.............................................................................................................................................................	22	1	116498.00	116498	10510	7685	8	0	38010	58968	1284	0	0	0	33
..................................................................................................................TTTGTGACCGACACTAACGGGTA............................................................................................................................................................	23	1	20989.00	20989	1800	8231	1	1	4346	6507	103	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGG..............................................................................................................................................................	21	1	3174.00	3174	1063	977	0	0	467	657	10	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAT...........................................................................................................................................................	24	1	2970.00	2970	90	170	0	0	1055	1637	18	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGC.............................................................................................................................................................	22	1	2740.00	2740	1433	27	0	0	209	1061	10	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAA...........................................................................................................................................................	24	1	1773.00	1773	31	120	0	0	614	1002	6	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGA.............................................................................................................................................................	22	1	1335.00	1335	58	43	0	0	451	772	11	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGG.............................................................................................................................................................	22	1	1243.00	1243	625	33	0	0	178	406	1	0	0	0	0
...................................................................................................................TTGTGACCGACACTAACGGGT.............................................................................................................................................................	21	1	951.00	951	22	720	0	0	67	138	4	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACG................................................................................................................................................................	19	1	886.00	886	72	145	0	0	293	376	0	0	0	0	0
...................................................................................................................TTGTGACCGACACTAACGGGTA............................................................................................................................................................	22	1	742.00	742	6	714	0	0	7	15	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGG...............................................................................................................................................................	20	1	668.00	668	195	215	0	0	92	159	7	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTT............................................................................................................................................................	23	1	375.00	375	97	26	0	0	65	185	2	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTC............................................................................................................................................................	23	1	230.00	230	2	8	0	0	32	187	1	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAC...........................................................................................................................................................	24	1	174.00	174	22	58	0	0	32	62	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAG...........................................................................................................................................................	24	1	167.00	167	43	24	0	0	38	62	0	0	0	0	0
...................................................................................................................TTGTGACCGACACTAACGGG..............................................................................................................................................................	20	1	97.00	97	1	94	0	0	1	1	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGT..............................................................................................................................................................	21	1	80.00	80	11	6	0	0	20	40	3	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTTT...........................................................................................................................................................	24	1	67.00	67	3	3	0	0	22	38	1	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGT...............................................................................................................................................................	20	1	66.00	66	5	1	0	0	19	39	2	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAAA..........................................................................................................................................................	25	1	58.00	58	1	1	0	0	16	40	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTG............................................................................................................................................................	23	1	56.00	56	14	6	0	0	13	23	0	0	0	0	0
....................................................................................................................TGTGACCGACACTAACGGGT.............................................................................................................................................................	20	1	49.00	49	2	30	0	0	8	9	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTCT...........................................................................................................................................................	24	1	48.00	48	0	0	0	0	7	41	0	0	0	0	0
....................................................................................................................TGTGACCGACACTAACGGGTA............................................................................................................................................................	21	1	38.00	38	0	36	0	0	2	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGTC.............................................................................................................................................................	22	1	34.00	34	0	0	0	0	4	30	0	0	0	0	0
........................................................................................................................................................................................CTCGTTTTTGCGATCACAAATCA......................................................................................	23	1	33.00	33	0	24	0	0	1	8	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGAC.............................................................................................................................................................	22	1	32.00	32	24	0	0	0	0	8	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAAT..........................................................................................................................................................	25	1	31.00	31	0	3	0	0	12	16	0	0	0	0	0
.........................................................................................................................................ATTGTTTGGTCGC------------------------CAGGA--TTA.............................................................................................................	21	1	29.00	29	20	7	0	0	2	0	0	0	0	0	0
.................................................................................................................TTTTGTGACCGACACTAACGGGT.............................................................................................................................................................	23	1	27.00	27	1	23	0	0	1	2	0	0	0	0	0
.................................................................................................................TTTTGTGACCGACACTAACGGGTA............................................................................................................................................................	24	1	24.00	24	0	24	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGCT............................................................................................................................................................	23	1	22.00	22	1	0	0	0	10	11	0	0	0	0	0
...................................................................................................................TTGTGACCGACACTAACGG...............................................................................................................................................................	19	1	22.00	22	0	22	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................CTCGTTTTTGCGATCACAAATC.......................................................................................	22	1	20.00	20	2	15	0	0	0	3	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGTG.............................................................................................................................................................	22	1	18.00	18	0	0	0	0	2	16	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGA..............................................................................................................................................................	21	1	18.00	18	5	0	0	0	7	6	0	0	0	0	0
...................................................................................................................TTGTGACCGACACTAACGGGTAT...........................................................................................................................................................	23	1	17.00	17	1	9	0	0	3	4	0	0	0	0	0
...................................................................................................................TTGTGACCGACACTAACGGGTAA...........................................................................................................................................................	23	1	17.00	17	0	12	0	0	1	4	0	0	0	0	0
........................................................................................................................................................................................CTCGTTTTTGCGATCACAAATCAT.....................................................................................	24	1	17.00	17	0	15	0	0	0	2	0	0	0	0	0
.........................................................................................................................................ATTGTTTGGTCGC------------------------CAGGA--TT..............................................................................................................	20	1	15.00	15	13	1	0	0	0	1	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGTA.............................................................................................................................................................	22	1	15.00	15	1	1	0	0	0	13	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTGT...........................................................................................................................................................	24	1	13.00	13	3	0	0	0	2	8	0	0	0	0	0
.....................................................................................................................GTGACCGACACTAACGGGT.............................................................................................................................................................	19	1	13.00	13	1	9	0	0	0	3	0	0	0	0	0
.....................................................................................................................................................................................TTACTCGTTTTTGCGATCACA...........................................................................................	21	1	10.00	10	1	2	0	0	3	4	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGCC............................................................................................................................................................	23	1	10.00	10	0	0	0	0	1	9	0	0	0	0	0
.....................................................................................................................GTGACCGACACTAACGGGTA............................................................................................................................................................	20	1	10.00	10	0	10	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTATA..........................................................................................................................................................	25	1	10.00	10	0	0	0	0	4	4	2	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGC..............................................................................................................................................................	21	1	9.00	9	3	0	0	0	3	3	0	0	0	0	0

droEre2

AAA--------CA------------------------------C--CCATAAGTGCAGCTGGTTAGTGCTTGAT-T-TTATGGCCAATCCT--------GTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGGCCGC------------------------CAGGA--TTACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAAC-GCAACGAAGTCGTGAAGCCAGTGAAAAA------------------------------TAATA----T	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..................................................................................................................TTTGTGACCGACACTAACGGGT.............................................................................................................................................................	22	1	251324.00	251324	34993	4	54131	4	21587	140603	2
..................................................................................................................TTTGTGACCGACACTAACGGGTA............................................................................................................................................................	23	1	68279.00	68279	32830	0	12598	0	1648	21142	61
..................................................................................................................TTTGTGACCGACACTAACGGGTAA...........................................................................................................................................................	24	1	6945.00	6945	612	0	2696	1	175	3457	4
..................................................................................................................TTTGTGACCGACACTAACGGG..............................................................................................................................................................	21	1	6922.00	6922	4519	1	597	0	124	1681	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAT...........................................................................................................................................................	24	1	4389.00	4389	731	0	1364	0	320	1974	0
...................................................................................................................TTGTGACCGACACTAACGGGT.............................................................................................................................................................	21	1	3321.00	3321	2589	0	137	0	31	564	0
...................................................................................................................TTGTGACCGACACTAACGGGTA............................................................................................................................................................	22	1	2559.00	2559	2453	0	30	0	2	74	0
..................................................................................................................TTTGTGACCGACACTAACGGGA.............................................................................................................................................................	22	1	2112.00	2112	213	0	494	0	236	1169	0
..................................................................................................................TTTGTGACCGACACTAACGGGC.............................................................................................................................................................	22	1	1552.00	1552	67	0	536	0	118	831	0
..................................................................................................................TTTGTGACCGACACTAACGG...............................................................................................................................................................	20	1	1358.00	1358	285	0	109	0	38	926	0
..................................................................................................................TTTGTGACCGACACTAACG................................................................................................................................................................	19	1	984.00	984	116	0	130	0	21	717	0
..................................................................................................................TTTGTGACCGACACTAACGGGG.............................................................................................................................................................	22	1	869.00	869	62	0	232	0	73	502	0
..................................................................................................................TTTGTGACCGACACTAACGGGTT............................................................................................................................................................	23	1	840.00	840	246	0	204	0	25	356	9
..................................................................................................................TTTGTGACCGACACTAACGGGTC............................................................................................................................................................	23	1	452.00	452	34	0	159	0	2	257	0
..................................................................................................................TTTGTGACCGACACTAACGGT..............................................................................................................................................................	21	1	429.00	429	98	0	17	0	24	290	0
...................................................................................................................TTGTGACCGACACTAACGGG..............................................................................................................................................................	20	1	373.00	373	369	0	0	0	0	4	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAC...........................................................................................................................................................	24	1	304.00	304	185	0	74	0	3	42	0
....................................................................................................................TGTGACCGACACTAACGGGT.............................................................................................................................................................	20	1	252.00	252	160	0	15	0	2	75	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAG...........................................................................................................................................................	24	1	238.00	238	86	0	27	0	7	118	0
..................................................................................................................TTTGTGACCGACACTAACGGGTG............................................................................................................................................................	23	1	199.00	199	27	0	27	0	0	145	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAAA..........................................................................................................................................................	25	1	186.00	186	12	0	46	0	6	122	0
....................................................................................................................TGTGACCGACACTAACGGGTA............................................................................................................................................................	21	1	138.00	138	123	0	5	0	1	9	0
..................................................................................................................TTTGTGACCGACACTAACGGGTTT...........................................................................................................................................................	24	1	126.00	126	34	0	10	0	19	63	0
..................................................................................................................TTTGTGACCGACACTAACGT...............................................................................................................................................................	20	1	123.00	123	24	0	10	0	12	77	0
........................................................................................................................................................................................CTCGTTTTTGCGATCACAAATC.......................................................................................	22	1	101.00	101	28	0	7	0	8	58	0
........................................................................................................................................................................................CTCGTTTTTGCGATCACAAATCA......................................................................................	23	1	86.00	86	28	0	3	0	1	54	0
...................................................................................................................TTGTGACCGACACTAACGGGTAA...........................................................................................................................................................	23	1	82.00	82	40	0	12	0	0	30	0
..................................................................................................................TTTGTGACCGACACTAACGGTA.............................................................................................................................................................	22	1	81.00	81	42	0	7	0	1	31	0
...................................................................................................................TTGTGACCGACACTAACGGGG.............................................................................................................................................................	21	1	81.00	81	77	0	1	0	0	3	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAAT..........................................................................................................................................................	25	1	80.00	80	6	0	29	1	3	41	0
...................................................................................................................TTGTGACCGACACTAACGGGTAT...........................................................................................................................................................	23	1	60.00	60	55	0	2	0	0	3	0
.................................................................................................................TTTTGTGACCGACACTAACGGGT.............................................................................................................................................................	23	1	50.00	50	38	0	1	0	1	10	0
.................................................................................................................TTTTGTGACCGACACTAACGGGTA............................................................................................................................................................	24	1	49.00	49	48	0	1	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTCT...........................................................................................................................................................	24	1	46.00	46	0	0	12	0	0	34	0
..................................................................................................................TTTGTGACCGACACTAACGTA..............................................................................................................................................................	21	1	37.00	37	26	0	0	0	0	11	0
......................................................................................................................TGACCGACACTAACGGGT.............................................................................................................................................................	18	1	31.00	31	10	0	0	0	2	19	0
.....................................................................................................................................................................................TTACTCGTTTTTGCGATCACA...........................................................................................	21	1	27.00	27	9	0	12	0	0	6	0
...................................................................................................................TTGTGACCGACACTAACGG...............................................................................................................................................................	19	1	26.00	26	25	0	0	0	0	1	0
..................................................................................................................TTTGTGACCGACACTAACGGA..............................................................................................................................................................	21	1	24.00	24	4	0	10	0	0	10	0
..................................................................................................................TTTGTGACCGACACTAACGGGTATA..........................................................................................................................................................	25	1	23.00	23	3	0	1	0	3	16	0
..................................................................................................................TTTGTGACCGACACTAACGGGTGT...........................................................................................................................................................	24	1	23.00	23	0	0	5	0	1	17	0
.........................................................................................................................................................................................TCGTTTTTGCGATCACAAATC.......................................................................................	21	1	22.00	22	16	0	0	0	1	5	0
...................................................................................................................TTGTGACCGACACTAACGGGA.............................................................................................................................................................	21	1	21.00	21	15	0	1	0	0	5	0
....................................................................................................................TGTGACCGACACTAACGGG..............................................................................................................................................................	19	1	21.00	21	21	0	0	0	0	0	0
........................................................................................................................................................................................CTCGTTTTTGCGATCACAAATCAT.....................................................................................	24	1	21.00	21	11	0	0	0	1	9	0
.....................................................................................................................GTGACCGACACTAACGGGTA............................................................................................................................................................	20	1	18.00	18	15	0	0	0	1	2	0
...................................................................................................................TTGTGACCGACACTAACGGGTT............................................................................................................................................................	22	1	16.00	16	16	0	0	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGTC.............................................................................................................................................................	22	1	15.00	15	1	0	14	0	0	0	0
..................................................................................................................TTTGTGACCGACACTAACGGGTACA..........................................................................................................................................................	25	1	14.00	14	5	0	2	0	0	7	0
.....................................................................................................................GTGACCGACACTAACGGGT.............................................................................................................................................................	19	1	14.00	14	6	0	3	0	0	5	0
..................................................................................................................TTTGTGACCGACACTAACGGGTATC..........................................................................................................................................................	25	1	13.00	13	0	0	4	0	1	8	0
...................................................................................................................TTGTGACCGACACTAACGGGTAC...........................................................................................................................................................	23	1	12.00	12	12	0	0	0	0	0	0
...................................................................................................................TTGTGACCGACACTAACG................................................................................................................................................................	18	1	12.00	12	9	0	0	0	0	3	0
..................................................................................................................TTTGTGACCGACACTAACGGGTAAG..........................................................................................................................................................	25	1	11.00	11	2	0	4	0	0	5	0
..................................................................................................................TTTGTGACCGACACTAACGGCA.............................................................................................................................................................	22	1	11.00	11	0	0	11	0	0	0	0

dpe-mir-274

scaffold_61:320256-320349 -

Known

Unknown

antisense_to_intron

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads