dpe-mir-263b

TGTTTAGCTTAGTTTAGCTTAGTTTGAGACAACGACTACGGCGATCGTTATTGCTGGCATTGGCTCTTGGCACTGGGAGAATTCACAGTTGGTTTTCATATATTCTGTGGTTCTGCGGGTGCCCAAAATCGAATGTTCGGCTCGAAACAGCAGCTGAAAAGTTTCAGCCCTTAACAAATATGTATGTTCATA *********************************...((((....(((...(((((((((.......((((((...(((((.(((((...((......))...))))))))))...))))))........)))).)))))....)))....)))).*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V057 head	V050 head	V111 male body	V042 embryo	M021 embryo	M042 female body
.................................................................CTTGGCACTGGGAGAATTCA...........................................................................................................	20	0	1	7464.00	7464	5642	1103	699	16	0	4
.................................................................CTTGGCACTGGGAGAATTCAC..........................................................................................................	21	0	1	5895.00	5895	4076	1142	635	30	1	11
.................................................................CTTGGCACTGGGAGAATTCACA.........................................................................................................	22	0	1	2671.00	2671	1299	931	327	108	2	4
.................................................................CTTGGCACTGGGAGAATTC............................................................................................................	19	0	1	2426.00	2426	1829	313	283	1	0	0
.................................................................CTTGGCACTGGGAGAATTCACAG........................................................................................................	23	0	1	2156.00	2156	802	841	307	180	24	2
.................................................................CTTGGCACTGGGAGAATT.............................................................................................................	18	0	1	165.00	165	139	17	7	2	0	0
.................................................................CTTGGCACTGGGAGCATTCA...........................................................................................................	20	1	1	107.00	107	83	21	2	1	0	0
.................................................................CTTGGCACTGGGAGCATTCAC..........................................................................................................	21	1	1	63.00	63	50	12	0	1	0	0
.................................................................CTTGGCACTGGGTGAATTCA...........................................................................................................	20	1	1	61.00	61	56	5	0	0	0	0
.................................................................CTTGGCACTGGGAGAATTCAA..........................................................................................................	21	1	1	60.00	60	47	9	4	0	0	0
.................................................................TTTGGCACTGGGAGAATTCA...........................................................................................................	20	1	1	55.00	55	50	5	0	0	0	0
.................................................................ATTGGCACTGGGAGAATTCA...........................................................................................................	20	1	1	50.00	50	46	3	1	0	0	0
.................................................................CTTGGCACTGGGCGAATTCA...........................................................................................................	20	1	1	50.00	50	46	4	0	0	0	0
.................................................................CTTGGCACTGGGAGCATTC............................................................................................................	19	1	1	50.00	50	47	3	0	0	0	0
.................................................................CTTGGCACTGGGAGAATTT............................................................................................................	19	1	1	47.00	47	35	8	4	0	0	0
.................................................................CTTGGCACTGGGAGGATTCA...........................................................................................................	20	1	1	46.00	46	43	2	1	0	0	0
.................................................................CTTGGCACTGGGAGACTTCA...........................................................................................................	20	1	1	45.00	45	39	5	1	0	0	0
.................................................................TTTGGCACTGGGAGAATTCAC..........................................................................................................	21	1	1	45.00	45	41	4	0	0	0	0
.................................................................CTGGGCACTGGGAGAATTCAC..........................................................................................................	21	1	1	45.00	45	44	1	0	0	0	0
.................................................................CTGGGCACTGGGAGAATTCA...........................................................................................................	20	1	1	41.00	41	39	2	0	0	0	0
.................................................................ATTGGCACTGGGAGAATTCAC..........................................................................................................	21	1	1	40.00	40	35	3	2	0	0	0
..................................................................TTGGCACTGGGAGAATTCAC..........................................................................................................	20	0	1	36.00	36	22	11	3	0	0	0
.................................................................CTTGGCACTGGGAGTATTCA...........................................................................................................	20	1	1	36.00	36	34	1	1	0	0	0
.................................................................CTTGGCACTGGGAGCATTCACA.........................................................................................................	22	1	1	35.00	35	21	10	0	4	0	0
.................................................................CGTGGCACTGGGAGAATTCA...........................................................................................................	20	1	1	34.00	34	33	1	0	0	0	0
.................................................................CTTGGCACTGGGGGAATTCA...........................................................................................................	20	1	1	34.00	34	26	6	2	0	0	0
..................................................................TTGGCACTGGGAGAATTCA...........................................................................................................	19	0	1	34.00	34	26	5	2	0	0	1
.................................................................CTTGGCACTGGGAGAATTCT...........................................................................................................	20	1	1	33.00	33	27	3	3	0	0	0
.................................................................CTTGGCACTGGGAGAATTCACAA........................................................................................................	23	1	1	28.00	28	14	10	1	1	2	0
.................................................................CTTGGCACTGGGAGAATGCA...........................................................................................................	20	1	1	26.00	26	24	2	0	0	0	0
.................................................................CTTGGCACTGGGAGACTTCAC..........................................................................................................	21	1	1	24.00	24	22	2	0	0	0	0
.................................................................CTTGGCACTGGGTGAATTC............................................................................................................	19	1	1	24.00	24	24	0	0	0	0	0
.................................................................CTTGGCACTGGGAGGATTCAC..........................................................................................................	21	1	1	24.00	24	20	3	0	1	0	0
.................................................................CTTGGCACTGGGAGAATTCACT.........................................................................................................	22	1	1	23.00	23	17	5	1	0	0	0
.................................................................CTTGGCACTGGGTGAATTCAC..........................................................................................................	21	1	1	21.00	21	19	2	0	0	0	0
.................................................................CTTGGCACTGGGAGAATTCAT..........................................................................................................	21	1	1	21.00	21	19	2	0	0	0	0
.................................................................ATTGGCACTGGGAGAATTCACA.........................................................................................................	22	1	1	21.00	21	12	9	0	0	0	0
.................................................................CGTGGCACTGGGAGAATTCAC..........................................................................................................	21	1	1	20.00	20	18	2	0	0	0	0
.................................................................CTTGGCACTGGCAGAATTCA...........................................................................................................	20	1	1	20.00	20	17	3	0	0	0	0
.................................................................CTTGGCAATGGGAGAATTCA...........................................................................................................	20	1	1	20.00	20	20	0	0	0	0	0
.................................................................CTTGGCACTGGGAGCATTCACAG........................................................................................................	23	1	1	20.00	20	13	2	0	5	0	0
.................................................................CTTGGCACTGGGAGAATTCG...........................................................................................................	20	1	1	19.00	19	18	1	0	0	0	0
.................................................................CTTGGCACTGGGAGTATTCAC..........................................................................................................	21	1	1	19.00	19	18	1	0	0	0	0
.................................................................CTTGGCACTGGGGGAATTCAC..........................................................................................................	21	1	1	18.00	18	17	1	0	0	0	0
.................................................................TTTGGCACTGGGAGAATTC............................................................................................................	19	1	1	18.00	18	17	0	1	0	0	0
.................................................................CTTGGCACTGGGAGAGTTCA...........................................................................................................	20	1	1	18.00	18	17	1	0	0	0	0
.................................................................CTTGGCACTGGGAGAATGCAC..........................................................................................................	21	1	1	18.00	18	16	2	0	0	0	0
.................................................................CTTGTCACTGGGAGAATTCAC..........................................................................................................	21	1	1	18.00	18	10	2	4	0	2	0
..................................................................TTGGCACTGGGAGAATTCACA.........................................................................................................	21	0	1	17.00	17	6	8	3	0	0	0
.................................................................CTTGGCACTGGGAGACTTC............................................................................................................	19	1	1	17.00	17	16	1	0	0	0	0
.................................................................CTTGGCACTGGGAGAATTCGC..........................................................................................................	21	1	1	17.00	17	16	1	0	0	0	0
.................................................................CTTGGCACTGGGAGGATTC............................................................................................................	19	1	1	17.00	17	16	0	1	0	0	0
.................................................................CTTGGCACTGGGCGAATTCAC..........................................................................................................	21	1	1	17.00	17	12	4	0	1	0	0
.................................................................TTTGGCACTGGGAGAATTCACA.........................................................................................................	22	1	1	16.00	16	13	3	0	0	0	0
.................................................................CTTGGCACTCGGAGAATTCA...........................................................................................................	20	1	1	16.00	16	13	3	0	0	0	0
..................................................................TTGGCACTGGGAGAATTCACAG........................................................................................................	22	0	1	16.00	16	2	9	1	4	0	0
.................................................................CTTGGCACTGGGAGAATTCCC..........................................................................................................	21	1	1	15.00	15	14	1	0	0	0	0
.................................................................ATTGGCACTGGGAGAATTCACAG........................................................................................................	23	1	1	15.00	15	9	2	1	3	0	0
.................................................................CTTAGCACTGGGAGAATTCA...........................................................................................................	20	1	1	14.00	14	7	4	3	0	0	0
.................................................................CTTGGCACTGGCAGAATTCAC..........................................................................................................	21	1	1	14.00	14	14	0	0	0	0	0
.................................................................CTTGGAACTGGGAGAATTCA...........................................................................................................	20	1	1	13.00	13	10	3	0	0	0	0
.................................................................CTTGGCACTGGGCGAATTC............................................................................................................	19	1	1	13.00	13	12	0	0	1	0	0
..................................................................TTGGCACTGGGAGAATTC............................................................................................................	18	0	1	13.00	13	12	1	0	0	0	0
.................................................................ATTGGCACTGGGAGAATTC............................................................................................................	19	1	1	13.00	13	9	2	2	0	0	0
.................................................................CTTGGCACTGCGAGAATTCA...........................................................................................................	20	1	1	13.00	13	13	0	0	0	0	0
.................................................................CTTGGCACTGGGAGAATTCACC.........................................................................................................	22	1	1	13.00	13	11	2	0	0	0	0
.................................................................CTTAGCACTGGGAGAATTCAC..........................................................................................................	21	1	1	13.00	13	6	4	3	0	0	0
.................................................................CTTCGCACTGGGAGAATTCA...........................................................................................................	20	1	1	13.00	13	11	1	0	1	0	0
.................................................................CTTGGCACGGGGAGAATTCAC..........................................................................................................	21	1	1	13.00	13	12	1	0	0	0	0
.................................................................CTTGGCACTCGGAGAATTCAC..........................................................................................................	21	1	1	12.00	12	10	2	0	0	0	0
.................................................................CTTGGCACTAGGAGAATTCAC..........................................................................................................	21	1	1	12.00	12	5	6	1	0	0	0
.................................................................CTTGGCACTGGGAGAATTAAC..........................................................................................................	21	1	1	12.00	12	8	3	1	0	0	0
.................................................................CTTGGCACTGGGAGAATGC............................................................................................................	19	1	1	12.00	12	12	0	0	0	0	0
.................................................................CTTGGCACTGGGAGAATTCTC..........................................................................................................	21	1	1	12.00	12	12	0	0	0	0	0
.................................................................CTCGGCACTGGGAGAATTCAC..........................................................................................................	21	1	1	12.00	12	10	0	2	0	0	0
.................................................................CTAGGCACTGGGAGAATTCA...........................................................................................................	20	1	1	12.00	12	12	0	0	0	0	0
.................................................................CTTGGCACTGGGAGAATTCC...........................................................................................................	20	1	1	12.00	12	9	3	0	0	0	0
.................................................................CTTGGCACTGAGAGAATTCA...........................................................................................................	20	1	1	12.00	12	10	2	0	0	0	0
.................................................................CTTGGCACTGGGAGAATCCAC..........................................................................................................	21	1	1	11.00	11	8	2	1	0	0	0
.................................................................CTGGGCACTGGGAGAATTC............................................................................................................	19	1	1	11.00	11	10	1	0	0	0	0
.................................................................CTTGGCACTGGGAGAATTCACAGT.......................................................................................................	24	0	1	11.00	11	5	5	0	1	0	0
.................................................................CTTGGCACTGTGAGAATTCAC..........................................................................................................	21	1	1	11.00	11	7	2	2	0	0	0
..........................................................................................................GTGGTTCTGCGGGTGCCAAAAT................................................................	22	2	1	11.00	11	1	1	1	6	0	2
.................................................................CTTGGCACTGGGAGATTTCA...........................................................................................................	20	1	1	11.00	11	11	0	0	0	0	0
.................................................................CTTGGCACTGGGAGAATCCA...........................................................................................................	20	1	1	11.00	11	11	0	0	0	0	0
.................................................................CTTGGCACTGGGAGAATTAA...........................................................................................................	20	1	2	10.50	21	15	5	1	0	0	0
.................................................................CTTGGCAATGGGAGAATTCAC..........................................................................................................	21	1	1	10.00	10	10	0	0	0	0	0
.................................................................CTTGGCACTTGGAGAATTCA...........................................................................................................	20	1	1	10.00	10	9	1	0	0	0	0
.................................................................CTAGGCACTGGGAGAATTCAC..........................................................................................................	21	1	1	10.00	10	9	1	0	0	0	0
.................................................................CTTGGCGCTGGGAGAATTCAC..........................................................................................................	21	1	1	10.00	10	9	1	0	0	0	0
.................................................................CATGGCACTGGGAGAATTCAC..........................................................................................................	21	1	1	10.00	10	10	0	0	0	0	0
.................................................................CTTGGCACTGGGAGAATTCACCG........................................................................................................	23	1	1	10.00	10	6	2	0	2	0	0
.................................................................CTTGGCACTGGGAGAATTTA...........................................................................................................	20	1	1	10.00	10	10	0	0	0	0	0
.................................................................CTCGGCACTGGGAGAATTCA...........................................................................................................	20	1	1	10.00	10	7	2	1	0	0	0
.................................................................CTTGGCACTGGGAGGATTCACA.........................................................................................................	22	1	1	9.00	9	5	2	1	1	0	0
.................................................................CTTGGCACTGCGAGAATTCAC..........................................................................................................	21	1	1	9.00	9	8	1	0	0	0	0
.................................................................CTTGGCACTGGGAGTATTC............................................................................................................	19	1	1	9.00	9	8	1	0	0	0	0
.................................................................CTTGGCACTGGGAGAATGCACA.........................................................................................................	22	1	1	9.00	9	5	4	0	0	0	0
.................................................................CATGGCACTGGGAGAATTCA...........................................................................................................	20	1	1	9.00	9	8	0	1	0	0	0
.................................................................CTTGGCACTTGGAGAATTCAC..........................................................................................................	21	1	1	9.00	9	8	0	1	0	0	0
.................................................................CTTGGCACTGGGAGAACTCAC..........................................................................................................	21	1	1	9.00	9	5	3	1	0	0	0
.................................................................CTTGGCACTGGGACAATTCA...........................................................................................................	20	1	1	9.00	9	8	1	0	0	0	0
.................................................................CTTGGCACTGAGAGAATTCACA.........................................................................................................	22	1	1	9.00	9	3	6	0	0	0	0
.................................................................CTTGGCACTGGGAGAACTCA...........................................................................................................	20	1	1	9.00	9	6	3	0	0	0	0
.................................................................CTTGGCACTGGGAGAGTTCAC..........................................................................................................	21	1	1	9.00	9	5	4	0	0	0	0
.................................................................CTGGGCACTGGGTGAATTCA...........................................................................................................	20	2	1	9.00	9	8	1	0	0	0	0
.................................................................CTTGGCCCTGGGAGAATTCAC..........................................................................................................	21	1	1	8.00	8	7	1	0	0	0	0
.................................................................CTTGACACTGGGAGAATTCAC..........................................................................................................	21	1	1	8.00	8	8	0	0	0	0	0
.................................................................CTTGGCGCTGGGAGAATTCA...........................................................................................................	20	1	1	8.00	8	8	0	0	0	0	0
.................................................................CGTGGCACTGGGAGAATTC............................................................................................................	19	1	1	8.00	8	8	0	0	0	0	0
.................................................................CTTGGCACTGGGAGTATTCACA.........................................................................................................	22	1	1	8.00	8	8	0	0	0	0	0
.................................................................CTTCGCACTGGGAGAATTCACA.........................................................................................................	22	1	1	8.00	8	8	0	0	0	0	0
.................................................................CCTGGCACTGGGAGAATTCA...........................................................................................................	20	1	1	8.00	8	5	3	0	0	0	0
.................................................................CTTCGCACTGGGAGAATTCAC..........................................................................................................	21	1	1	8.00	8	7	1	0	0	0	0
.................................................................GTTGGCACTGGGAGAATTCAC..........................................................................................................	21	1	1	8.00	8	7	1	0	0	0	0
.................................................................CTTGGCACTGGCAGAATTCACA.........................................................................................................	22	1	1	8.00	8	5	3	0	0	0	0
.................................................................CTTGACACTGGGAGAATTCA...........................................................................................................	20	1	1	8.00	8	8	0	0	0	0	0
.................................................................CTTGGCACTAGGAGAATTCACA.........................................................................................................	22	1	1	8.00	8	1	7	0	0	0	0
.................................................................CTTGGCACCGGGAGAATTCA...........................................................................................................	20	1	1	8.00	8	7	0	1	0	0	0
.................................................................CTTGGCACTGGGGGAATTC............................................................................................................	19	1	1	8.00	8	8	0	0	0	0	0
.................................................................CTTGGCACTGGGAGAATTCACGG........................................................................................................	23	1	1	8.00	8	5	3	0	0	0	0
.................................................................CTTGGCCCTGGGAGAATTCA...........................................................................................................	20	1	1	7.00	7	7	0	0	0	0	0
.................................................................CGTGGCACTGGGAGAATTCACA.........................................................................................................	22	1	1	7.00	7	6	0	0	1	0	0
.................................................................CTTGGCACCGGGAGAATTCAC..........................................................................................................	21	1	1	7.00	7	5	2	0	0	0	0
.................................................................CTTGGCACTGGGAGAATGCACAG........................................................................................................	23	1	1	7.00	7	4	3	0	0	0	0
.................................................................CTTGGCACTGGGAGAATTCAAA.........................................................................................................	22	1	1	7.00	7	3	4	0	0	0	0
.................................................................CTTGCCACTGGGAGAATTCA...........................................................................................................	20	1	1	7.00	7	5	1	1	0	0	0
.................................................................CTTGGCACTGGGAGAATTCTCA.........................................................................................................	22	1	1	7.00	7	7	0	0	0	0	0
.................................................................CTTGGCACTGGCAGAATTC............................................................................................................	19	1	1	7.00	7	6	1	0	0	0	0
.................................................................CTTGGCAGTGGGAGAATTCA...........................................................................................................	20	1	1	7.00	7	7	0	0	0	0	0
.................................................................CTTGGCACTGGGAGACTTCACA.........................................................................................................	22	1	1	7.00	7	6	1	0	0	0	0
.................................................................CTTGGCACTGGGAGATTTCAC..........................................................................................................	21	1	1	7.00	7	6	1	0	0	0	0
.................................................................CTTGGAACTGGGAGAATTC............................................................................................................	19	1	1	7.00	7	4	2	1	0	0	0
.................................................................CTTGGCACTAGGAGAATTCA...........................................................................................................	20	1	1	6.00	6	1	5	0	0	0	0
.................................................................CTTGGCACTGGGACAATTC............................................................................................................	19	1	1	6.00	6	6	0	0	0	0	0
.................................................................CTTGGCACTGGGAGAATTCACAGA.......................................................................................................	24	1	1	6.00	6	3	2	0	1	0	0
.................................................................TTTGGCACTGGGAGAATTCACAG........................................................................................................	23	1	1	6.00	6	3	1	1	1	0	0
.................................................................CTTGGTACTGGGAGAATTCAC..........................................................................................................	21	1	1	6.00	6	2	4	0	0	0	0
.................................................................CTTGGCACTGGGAGAATTCACG.........................................................................................................	22	1	1	6.00	6	5	0	1	0	0	0
.................................................................CTTGGCACTGGTAGAATTCACA.........................................................................................................	22	1	1	6.00	6	5	0	1	0	0	0
.................................................................CTTGGAACTGGGAGAATTCAC..........................................................................................................	21	1	1	6.00	6	5	1	0	0	0	0
.................................................................CTTGGCACTGGGCGGATTCA...........................................................................................................	20	2	1	6.00	6	6	0	0	0	0	0
.................................................................CTTGGTACTGGGAGAATTC............................................................................................................	19	1	1	6.00	6	3	0	3	0	0	0
.................................................................CTTGCCACTGGGAGAATTCACAG........................................................................................................	23	1	1	6.00	6	3	0	0	0	3	0
.................................................................CTTGGCACTGGGAGAATTTACA.........................................................................................................	22	1	1	6.00	6	2	2	2	0	0	0
.................................................................CTGGGCACTGGGAGAATTCACA.........................................................................................................	22	1	1	6.00	6	5	1	0	0	0	0
.................................................................CTTGGCACTGCGAGAATTC............................................................................................................	19	1	1	6.00	6	4	1	1	0	0	0
.................................................................CTTGGCACCGGGAGAATTCACAG........................................................................................................	23	1	1	6.00	6	4	2	0	0	0	0
.................................................................CTTGGCACTGGGTGAATTCACA.........................................................................................................	22	1	1	6.00	6	4	2	0	0	0	0
.................................................................CTGGGCACTGGGAGCATTCAC..........................................................................................................	21	2	1	6.00	6	5	1	0	0	0	0
.................................................................CTTGGCACTGAGAGAATTCAC..........................................................................................................	21	1	1	6.00	6	2	4	0	0	0	0
.................................................................CTTGGCACTAGGAGAATTCACAG........................................................................................................	23	1	1	6.00	6	0	4	0	2	0	0
.................................................................CTTGGCACTGGGAGAATTCGCA.........................................................................................................	22	1	1	6.00	6	3	2	1	0	0	0
.................................................................CTTGGCACAGGGAGAATTCAC..........................................................................................................	21	1	1	5.00	5	3	1	0	0	0	1
.................................................................CTTGGCACGGGGAGAATTCA...........................................................................................................	20	1	1	5.00	5	5	0	0	0	0	0
.................................................................CTTGGCACTGGGAGAAGTC............................................................................................................	19	1	1	5.00	5	5	0	0	0	0	0
.................................................................GTTGGCACTGGGAGAATTCACA.........................................................................................................	22	1	1	5.00	5	4	0	0	1	0	0
.................................................................CTTGGCACTGGGAGAATTTAC..........................................................................................................	21	1	1	5.00	5	5	0	0	0	0	0
.................................................................CTTGGCACTGGGAGAAATCA...........................................................................................................	20	1	1	5.00	5	3	0	2	0	0	0
.................................................................CTTGGCGCTGGGAGAATTCACAG........................................................................................................	23	1	1	5.00	5	3	2	0	0	0	0
.................................................................CTTGGCACTGGGAGAATTCACAT........................................................................................................	23	1	1	5.00	5	2	2	1	0	0	0
.................................................................CTTGGCACTGGGATAATTCAC..........................................................................................................	21	1	1	5.00	5	4	1	0	0	0	0
.................................................................CTTGGCACTGGAAGAATTCAC..........................................................................................................	21	1	1	5.00	5	3	1	1	0	0	0
.................................................................CTTGGCACTGTGAGAATTCA...........................................................................................................	20	1	1	5.00	5	3	1	1	0	0	0
.................................................................CTGGGCACTGGGAGAATTCACAG........................................................................................................	23	1	1	5.00	5	5	0	0	0	0	0
.................................................................CTTGGCACTGGAAGAATTCA...........................................................................................................	20	1	1	5.00	5	5	0	0	0	0	0
.................................................................CCTGGCACTGGGAGAATTCAC..........................................................................................................	21	1	1	5.00	5	3	1	1	0	0	0
.................................................................CTTGGGACTGGGAGAATTCA...........................................................................................................	20	1	1	5.00	5	3	2	0	0	0	0
.................................................................CTTGGCACTCGGAGAATTC............................................................................................................	19	1	1	5.00	5	4	0	1	0	0	0
.................................................................CTTGGCACTGCGAGAATTCACAG........................................................................................................	23	1	1	5.00	5	2	3	0	0	0	0
.................................................................CGGGGCACTGGGAGAATTCAC..........................................................................................................	21	2	1	5.00	5	5	0	0	0	0	0
.................................................................ATGGGCACTGGGAGAATTCAC..........................................................................................................	21	2	1	5.00	5	5	0	0	0	0	0
.................................................................CTTGGAACTGGGAGAATTCACA.........................................................................................................	22	1	1	5.00	5	1	4	0	0	0	0
.................................................................CTTGGCACTGGGAGAAGTCAC..........................................................................................................	21	1	1	5.00	5	3	2	0	0	0	0
.................................................................CTTGGCAGTGGGAGAATTC............................................................................................................	19	1	1	5.00	5	5	0	0	0	0	0
.................................................................CTTGGCACTGGGAGAATTCCCA.........................................................................................................	22	1	1	5.00	5	2	3	0	0	0	0
.................................................................CTTGGCACTGGGAGAATTA............................................................................................................	19	1	2	5.00	10	9	1	0	0	0	0
.................................................................CTTGGCAATGGGAGAATTCACA.........................................................................................................	22	1	1	5.00	5	5	0	0	0	0	0
.................................................................CTTGGCACTGAGAGAATTCACAG........................................................................................................	23	1	1	5.00	5	1	4	0	0	0	0
.................................................................CTTGTCACTGGGAGAATTCA...........................................................................................................	20	1	1	5.00	5	3	0	2	0	0	0
.................................................................CTTGGCACTGGGACAATTCAC..........................................................................................................	21	1	1	5.00	5	4	0	1	0	0	0
.................................................................TTTGGCACTGGGTGAATTCA...........................................................................................................	20	2	2	4.50	9	8	1	0	0	0	0
.................................................................CTTGGCACTGGTAGAATTCA...........................................................................................................	20	1	2	4.50	9	8	1	0	0	0	0
.................................................................CTTGGCTCTGGGGGAATTCA...........................................................................................................	20	2	1	4.00	4	3	1	0	0	0	0
.................................................................CTTGGCACTGGGTGAATTCACAG........................................................................................................	23	1	1	4.00	4	4	0	0	0	0	0
.................................................................CTTGGCACTGGGAGAACGCA...........................................................................................................	20	2	1	4.00	4	4	0	0	0	0	0
.................................................................CTTGGCACTGGGAGAAGTCA...........................................................................................................	20	1	1	4.00	4	4	0	0	0	0	0
.................................................................ATGGGCACTGGGAGAATTCA...........................................................................................................	20	2	1	4.00	4	4	0	0	0	0	0
.................................................................CGTGGCACTGGGAGCATTCAC..........................................................................................................	21	2	1	4.00	4	4	0	0	0	0	0
.................................................................CTAGGCACTGGGAGAATTCACA.........................................................................................................	22	1	1	4.00	4	4	0	0	0	0	0
.................................................................CTTGGCACTCGGAGAATTCACA.........................................................................................................	22	1	1	4.00	4	4	0	0	0	0	0
.................................................................CTTGACACTGGGAGAATTC............................................................................................................	19	1	1	4.00	4	4	0	0	0	0	0
.................................................................CTGGGCACTGGGAGAATTCTC..........................................................................................................	21	2	1	4.00	4	4	0	0	0	0	0
.................................................................CTTGCCACTGGGAGAATTCAC..........................................................................................................	21	1	1	4.00	4	2	1	1	0	0	0
.................................................................CTTGGCACTGGGAGGATTCACAG........................................................................................................	23	1	1	4.00	4	3	0	0	1	0	0
.................................................................CTTGGTACTGGGAGAATTCA...........................................................................................................	20	1	1	4.00	4	3	0	1	0	0	0
.................................................................CTTGGCACTGGGCGCATTCA...........................................................................................................	20	2	2	4.00	8	8	0	0	0	0	0
.................................................................GTTGGCACTGGGAGAATTCA...........................................................................................................	20	1	1	4.00	4	4	0	0	0	0	0
.................................................................CTTGGCAGTGGGAGAATTCAC..........................................................................................................	21	1	1	4.00	4	4	0	0	0	0	0
.................................................................CTTGGCTCTGGGAGAATTCACA.........................................................................................................	22	1	1	4.00	4	3	0	0	1	0	0
.................................................................CATGGCACTGGGAGAATTC............................................................................................................	19	1	1	4.00	4	4	0	0	0	0	0
.................................................................CTTGGCACTGGGAGAATACA...........................................................................................................	20	1	1	4.00	4	4	0	0	0	0	0
.................................................................CTTTGCACTGGGAGAATTCA...........................................................................................................	20	1	1	4.00	4	2	0	2	0	0	0
.................................................................CCTGGCACTGGGAGAATTCACA.........................................................................................................	22	1	1	4.00	4	3	0	1	0	0	0
.................................................................CTTGGCACTGGGAGAACTC............................................................................................................	19	1	1	4.00	4	4	0	0	0	0	0
.................................................................CTTGGCACTGGGAGAATACAC..........................................................................................................	21	1	1	4.00	4	3	1	0	0	0	0
.................................................................CTCGGCACTGGGAGAATTC............................................................................................................	19	1	1	4.00	4	3	1	0	0	0	0
.................................................................CTTGGCTCTGGGAGAATTCAC..........................................................................................................	21	1	1	4.00	4	2	1	1	0	0	0
.................................................................CTTGGCACTGGGAGAATCCACAG........................................................................................................	23	1	1	4.00	4	4	0	0	0	0	0
.................................................................CTTGGCAGTGGGAGAATTCACA.........................................................................................................	22	1	1	4.00	4	3	1	0	0	0	0
.................................................................CTTGGCACTGGGAGAGTTC............................................................................................................	19	1	1	4.00	4	4	0	0	0	0	0
.................................................................CTTGGCACTGGGCGGATTCACA.........................................................................................................	22	2	1	4.00	4	2	1	0	1	0	0
.................................................................CTGGGCACTGGGTGAATTCAC..........................................................................................................	21	2	1	4.00	4	3	1	0	0	0	0
.................................................................CTTGGCACTGGGTGGATTCA...........................................................................................................	20	2	2	4.00	8	8	0	0	0	0	0
.................................................................CTTGGCACTGGGAGAATTCACAC........................................................................................................	23	1	1	4.00	4	2	2	0	0	0	0
.................................................................CTTGGCACTGGGAGAATTGA...........................................................................................................	20	1	1	4.00	4	4	0	0	0	0	0
.................................................................CTTGGCACGGGGAGAATTCACAG........................................................................................................	23	1	1	4.00	4	2	1	0	0	0	1
.................................................................CTTGGCACTGGGCGAATTCACA.........................................................................................................	22	1	1	4.00	4	2	2	0	0	0	0
.................................................................CTTGGCACTGGGATAATTCA...........................................................................................................	20	1	1	4.00	4	3	0	1	0	0	0
.................................................................CTTCGCACTGGGTGAATTCAC..........................................................................................................	21	2	1	4.00	4	3	1	0	0	0	0
.................................................................CTTGGCACTGGGAGAATTCCCAG........................................................................................................	23	1	1	4.00	4	2	1	0	1	0	0
.................................................................CTTGGCATTGGGAGAATTCACAG........................................................................................................	23	1	1	4.00	4	0	1	1	2	0	0
.................................................................CTTGGCACTGGGAGTATTCACAG........................................................................................................	23	1	1	4.00	4	2	0	0	2	0	0
.................................................................CTTGGCACTGAGAGAATTC............................................................................................................	19	1	1	4.00	4	2	2	0	0	0	0
.................................................................CTTGGCAGTGGGAGAATGCACAG........................................................................................................	23	2	1	3.00	3	3	0	0	0	0	0
.................................................................CTTGCCACTGGGTGAATTCA...........................................................................................................	20	2	1	3.00	3	2	1	0	0	0	0
.................................................................CTTGGCACTGGGTGAATTGAC..........................................................................................................	21	2	1	3.00	3	3	0	0	0	0	0
.................................................................CTTGGCACTGGGAGGATT.............................................................................................................	18	1	1	3.00	3	3	0	0	0	0	0
.................................................................CTTGGCACTGGGAGAATTCGCAG........................................................................................................	23	1	1	3.00	3	2	0	1	0	0	0
.................................................................CTTTGCACTGGGAGAATTCAC..........................................................................................................	21	1	1	3.00	3	1	0	2	0	0	0
.................................................................CTTGGCACTGGGAGAACTCACA.........................................................................................................	22	1	1	3.00	3	2	1	0	0	0	0
.................................................................CTTGGCTCTGGGAGAATTC............................................................................................................	19	1	1	3.00	3	3	0	0	0	0	0
.................................................................CTTGGCACTGGGAGAATTCAAAG........................................................................................................	23	1	1	3.00	3	1	2	0	0	0	0
.................................................................CTTGGCACTGGGAGAATTAACA.........................................................................................................	22	1	1	3.00	3	2	1	0	0	0	0
.................................................................CTTGGCACTGGGAGAATTCTT..........................................................................................................	21	2	1	3.00	3	2	0	1	0	0	0
.................................................................CTTGGCACTGGGAGCATT.............................................................................................................	18	1	1	3.00	3	3	0	0	0	0	0
.................................................................CTTGGCACTGGGATGATTCA...........................................................................................................	20	2	1	3.00	3	2	1	0	0	0	0
.................................................................CTTGGCACTGGGAGAGTTCACA.........................................................................................................	22	1	1	3.00	3	3	0	0	0	0	0
.................................................................CTTGGCACTGGTAGCATTCAC..........................................................................................................	21	2	1	3.00	3	2	1	0	0	0	0
.................................................................CTTGGCCCTGGGAGCATTCA...........................................................................................................	20	2	1	3.00	3	3	0	0	0	0	0
.................................................................CGTGGCACTGGGAGAATTCACAG........................................................................................................	23	1	1	3.00	3	2	1	0	0	0	0
.................................................................CTTGGCACTGGGAGATTTCACA.........................................................................................................	22	1	1	3.00	3	3	0	0	0	0	0
.................................................................CTTGGCATTGGGAGAATTCAC..........................................................................................................	21	1	1	3.00	3	2	1	0	0	0	0
.................................................................CTTGGCACTGGGAGAATTCAG..........................................................................................................	21	1	1	3.00	3	2	0	0	0	0	1
......................................................................CACTGGGAGAATTCACAG........................................................................................................	18	0	1	3.00	3	0	1	0	0	2	0
.................................................................CTTAGCACTGGGAGAATTCACA.........................................................................................................	22	1	1	3.00	3	1	2	0	0	0	0
.................................................................CTTGGCACTGGGAGCATTCCC..........................................................................................................	21	2	1	3.00	3	1	2	0	0	0	0
.................................................................CTTGGCACTGGGCGGATTCAC..........................................................................................................	21	2	1	3.00	3	3	0	0	0	0	0
.................................................................CTTGGCACTGGGAGAATTAACAG........................................................................................................	23	1	1	3.00	3	3	0	0	0	0	0
.................................................................CGTGGCACTGGGAGTATTCAC..........................................................................................................	21	2	1	3.00	3	3	0	0	0	0	0
.................................................................CTTGGAACTGGGAGCATTCA...........................................................................................................	20	2	2	3.00	6	4	2	0	0	0	0
.................................................................CTTGGCAATGGGGGAATTCA...........................................................................................................	20	2	1	3.00	3	3	0	0	0	0	0
.................................................................CGGGGCACTGGGAGAATTCA...........................................................................................................	20	2	1	3.00	3	3	0	0	0	0	0
.................................................................CTTGGCAATGGGAGAATTCACAG........................................................................................................	23	1	1	3.00	3	1	2	0	0	0	0
.................................................................CTAGGCACTGGGAGAATTC............................................................................................................	19	1	1	3.00	3	3	0	0	0	0	0
.................................................................TTTGGCACTGGGTGAATTCAC..........................................................................................................	21	2	1	3.00	3	3	0	0	0	0	0
.................................................................CGTGGCACGGGGAGAATTCAC..........................................................................................................	21	2	1	3.00	3	2	1	0	0	0	0
.................................................................CTTGGCACTGGGAAAATTCA...........................................................................................................	20	1	1	3.00	3	3	0	0	0	0	0
.................................................................CTTGGCACTGGGTGAATTCT...........................................................................................................	20	2	1	3.00	3	3	0	0	0	0	0
.................................................................CTTGGCGCTGGGAGAATTC............................................................................................................	19	1	1	3.00	3	3	0	0	0	0	0
.................................................................CTAGGCACTGGGTGAATTCA...........................................................................................................	20	2	1	3.00	3	3	0	0	0	0	0
.................................................................CTTGCCACTGGGAGAATTCACA.........................................................................................................	22	1	1	3.00	3	3	0	0	0	0	0
.................................................................CTTGGAACTGGGAGAATTCACAG........................................................................................................	23	1	1	3.00	3	2	1	0	0	0	0
.................................................................CTTGGCAATGGGAGAATTC............................................................................................................	19	1	1	3.00	3	3	0	0	0	0	0
.................................................................CTTGGCACTGGGACAATTCACA.........................................................................................................	22	1	1	3.00	3	1	1	1	0	0	0
.................................................................CTGGGCACTGGGAGGATTCA...........................................................................................................	20	2	1	3.00	3	3	0	0	0	0	0
.................................................................CTTGGCACTGCGAGCATTCA...........................................................................................................	20	2	1	3.00	3	3	0	0	0	0	0
.................................................................CGTGGCACTGGGAGAATTCAT..........................................................................................................	21	2	1	3.00	3	2	1	0	0	0	0
.................................................................CTTGTCACTGGGAGAATTCACAG........................................................................................................	23	1	1	3.00	3	0	1	0	0	2	0
.................................................................CTTGGCACTGGGATAATTC............................................................................................................	19	1	1	3.00	3	3	0	0	0	0	0
.................................................................CTTGGTACTGGGAGAATTCACA.........................................................................................................	22	1	1	3.00	3	0	3	0	0	0	0
.................................................................CTTGGCACTGGGGGAATTCACA.........................................................................................................	22	1	1	3.00	3	2	1	0	0	0	0
.................................................................CTTGGCACTGGGTGAATT.............................................................................................................	18	1	1	3.00	3	3	0	0	0	0	0
.................................................................CTTGGCACTCGGAGAATTCACAG........................................................................................................	23	1	1	3.00	3	2	1	0	0	0	0
.................................................................CTTCGCACTGGGAGAATTC............................................................................................................	19	1	1	3.00	3	3	0	0	0	0	0
.................................................................CTGGGCACTGGGAGAATTCAT..........................................................................................................	21	2	1	3.00	3	3	0	0	0	0	0
.................................................................CTTGGCACTGGGAGAATTGAC..........................................................................................................	21	1	1	3.00	3	2	0	1	0	0	0
.................................................................CTTGGCACTGGGAGAATTCATA.........................................................................................................	22	1	1	3.00	3	3	0	0	0	0	0
.................................................................CTTGGCATTGGGAGAATTCA...........................................................................................................	20	1	1	3.00	3	3	0	0	0	0	0
.................................................................CTTGTCACTGGGAGAATTCACA.........................................................................................................	22	1	1	3.00	3	2	0	0	0	1	0
.................................................................CTTGGCACTGGGAGAATTCACTG........................................................................................................	23	1	1	3.00	3	3	0	0	0	0	0
.................................................................CTTGGCACTGGGAAAATTCAC..........................................................................................................	21	1	1	3.00	3	3	0	0	0	0	0
.................................................................CTTGGCACTGGTAGAATTCAC..........................................................................................................	21	1	1	3.00	3	3	0	0	0	0	0
................................................................CCTTGGCACTGGGAGAATTCA...........................................................................................................	21	1	1	3.00	3	2	1	0	0	0	0
.................................................................CTTGGCACTCGGAGCATTCA...........................................................................................................	20	2	1	3.00	3	3	0	0	0	0	0
.................................................................CGTGGCACTGGGTGAATTCA...........................................................................................................	20	2	2	2.50	5	5	0	0	0	0	0
.................................................................CTAGGCACTGGGAGCATTCA...........................................................................................................	20	2	1	2.00	2	2	0	0	0	0	0
.................................................................CTTGGCACTGGGAGCATTCT...........................................................................................................	20	2	1	2.00	2	2	0	0	0	0	0
.................................................................CTTGGCACTGGGAGAATTCATAG........................................................................................................	23	1	1	2.00	2	1	0	0	1	0	0
.................................................................ATTGGCACTGGGAGAATTCTC..........................................................................................................	21	2	1	2.00	2	2	0	0	0	0	0
.................................................................CATGGCACTGGGAGAATT.............................................................................................................	18	1	1	2.00	2	2	0	0	0	0	0
.................................................................CTTGGCACTGGGACAATGCAC..........................................................................................................	21	2	1	2.00	2	2	0	0	0	0	0
.................................................................CTTGGCACTGGGAGAATCCACA.........................................................................................................	22	1	1	2.00	2	0	2	0	0	0	0
.................................................................CTTGGCACTGGGAGAGTGCAC..........................................................................................................	21	2	1	2.00	2	2	0	0	0	0	0
.................................................................CTTGGCACTGGGAGATTTCG...........................................................................................................	20	2	1	2.00	2	2	0	0	0	0	0
..............................................GTTATTGCTGGCATTGGCT...............................................................................................................................	19	0	1	2.00	2	0	0	0	2	0	0
.................................................................CTTGGCACTGGTAGACTTCAC..........................................................................................................	21	2	1	2.00	2	2	0	0	0	0	0
.................................................................CTCGGCACTGGGAGAATTCACA.........................................................................................................	22	1	1	2.00	2	0	1	1	0	0	0
.................................................................CTTCGCACTGGGTGAATTCA...........................................................................................................	20	2	1	2.00	2	2	0	0	0	0	0
.................................................................CTTTGCACTGGGAGAATTCACA.........................................................................................................	22	1	1	2.00	2	0	0	1	0	1	0
.................................................................CTTGGTACTGGGAGAATTCACAG........................................................................................................	23	1	1	2.00	2	1	0	0	0	1	0

ACAAATCGAATCAAATCGAATCAAACTCTGTTGCTGATGCCGCTAGCAATAACGACCGTAACCGAGAACCGTGACCCTCTTAAGTGTCAACCAAAAGTATATAAGACACCAAGACGCCCACGGGTTTTAGCTTACAAGCCGAGCTTTGTCGTCGACTTTTCAAAGTCGGGAATTGTTTATACATACAAGTAT *********************************...((((....(((...(((((((((.......((((((...(((((.(((((...((......))...))))))))))...))))))........)))).)))))....)))....)))).*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V057 head
.............................GTAGCTGATGCCGCGAGC.................................................................................................................................................	18	2	5	0.20	1	1

Species	Coordinate	ID	Type	Alignment
droPer2	scaffold_9:1893997-1894188 -	dpe-mir-263b	Known_mirbase	TGTTTAGCTTAGTTTAGCTTAGTTTGAGACAACGACTACGGCGATCGTTAT--TGCTGGCATTGGCTCTTGGCACTGGGAGAATTCACAGTTGGTTTTCA---TATATTCTGTGGTTCTGCGGGTGCCCAAAATCGAATGTTCG-GCTCGAAACAGCAG----CTG----------------AAAAGTTTCAGCCCTTAACAAATATGTATGTTCATA
dp5	XR_group6:3598000-3598189 -	dps-mir-263b	Known_mirbase	TGTTTAGCTTAGTTTAGCTTAGTTTGAGACAACGACTACGGCGATCGTTAT--TGCTGGCATTGGCTCTTGGCACTGGGAGAATTCACAGTTGGTTTCCA---TATATTCTGTGGTTCTGCGGGTGCC-AAAATCGAATGTTCG-GCTCGAAACAGCAG----CTG----------------AAAAGTTTCAGCC-TTAACAAATATATATGTTCATA
droWil2	scf2_1100000004540:1452428-1452560 +	dwi-mir-263b	Known_mirbase	T-----------------------------------------------------GCTCACAATGCATCTTGGCACTGGGAGAATTCACAGTTGATTCTTATTCGATATTCTGTGGTTCTGCGGGTGCC-AAAATCTAATGTTTGAGCTGTGATCATCGA-----AA---AAGAAATCAAATGAAAACTTTAAACC-----------------------
droVir3	scaffold_13049:24412488-24412623 -	dvi-mir-263b	Known_mirbase	C-----------------------------------TACGGAAAGCAGAGC--TACTGCCATTTCATCTTGGCACTGGGAGAATTCACAGTCGATTACAT---AATATTCTGTGGTTCTGCGGGTGCC-AAAATGTAATGTGTG-GACCAAGACAGC------CTG----------------AAA---------C-TAAACAATTGTG--------TA
droMoj3	scaffold_6680:9938554-9938609 +			T----------------------------------------------------GGTTAGCTTCGCTTCGCTTTGCTTGTTGTAGCTGCTG---------------------CTGCTGCTGCTGCTGCT-G----------------------------------------------------------------------------------------
droGri2	scaffold_15110:24319783-24319890 -	dgr-mir-263b	Known_mirbase	T-----------------------------------------------------ACTGCCATTACATCTTGGCACTGGGAGAATTCACAGTTGGTTATAT---AATATTCTGTGGTTCTGCGGGTGCC-AAACTGTAATGTGTG-GACATAGAAACAAC----CTG----------------AAAA--------------------------------
droAna3	scaffold_13337:11320743-11320836 +	dan-mir-263b	Known_mirbase	T-----------------------------------------------------GCTGTCTTTGAATCTTGGCACTGGGAGAATTCACAGTTGATTTTAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAATTGAAATAATG-GCCTAAAAC----------------------------------------------------------------
droBip1	scf7180000396569:85659-85781 -			T-----------------------------------------------TGC--TGCTGTCTTTGAATCTTGGCACTGGGAGAATTCACAGTTGATTTTTT-----TATTCTGTGGTTCTGCGGGTGCC-AAAATTTAAATAATA-GCCTAAAACCTCAA--------AAAATTAAATATTT--------TAT-----------------------AAA
droKik1	scf7180000302697:259377-259457 -			T----------------------------------------------------TGCCTTCTTTGAGCCTTGGCACTGGGAGAATTCACAGTTGATTTTC----AATATTCTGTGGTTCTGCGGGTGCC-AAAACTTAA--------------------------------------------------------------------------------
droFic1	scf7180000454065:1467853-1467960 +			------------------------------------------------------GCTGGCTGTGAATCTTGGCACTGGGAGAATTCACAGTTGATTTCAC-----TATTCTGTGGTTCTGCGGGTGCC-AAAATTCACGTTTCA-GCTTTAAACAACAAAGGT-TA----------------AAAA--------------------------------
droEle1	scf7180000491000:1283039-1283161 -			T-----------------------------------------------------GCTGACTTTGAATCTTGGCACTGGGAGAATTCACAGTTGATTTCAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAATTTAATCGACG-GCTTTAAACAACAT-TTC-TA-AAAGCAAATTATAT--------------------------------TAATA
droRho1	scf7180000777749:23046-23167 +			------------------------------------------------------GCTGCCTTTGAATCTTGGCACTGGGAGAATTCACAGTTGATTTTAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAATTTAACCGACA-GCTTTAAACAACAA-TTT-TAAAAAGCAAAATATAT---------------------------------AATA
droBia1	scf7180000302334:535722-535838 +			G------------------------------------------ATCTTCATTCAGCCGGCTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGACTTCAA-----AACTCTGTGGTTCTGCGGGTGCC-AAAATTTAATCCTCG-ACTCTGCACAACGA----CTA----------------AAAA--------------------------------
droTak1	scf7180000415815:88001-88111 -			T------------------------------------------------AT--AGCCGGCTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGATTTCAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAATTTAATCCACG-GCTCTAACCAACGA----CCT----------------AAAAAT------------------------------
droEug1	scf7180000408844:587120-587216 -			T-----------------------------------------------------GCTGACTTTGAATCTTGGCACTGGGAGAATTCACAGTTGATTTCAT-----TAGTCTGTGGTTCTGCGGGTGCC-AAAATTTAAGCTACA-GCTATAAGCAAC-------------------------------------------------------------
dm3	chr3L:15836515-15836595 -	dme-mir-263b	Known_mirbase	T----------------------------------------------------TGCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGACTTTAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAACTTAAA-------------------------------------------------------------------------------
droSim2	3l:15464220-15464333 -	dsi-mir-263b	Known_mirbase	T----------------------------------------------------TGCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGACTTGAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAACTTAAAAACCG-GCTTTATACAACAAATTC-TT--------------------------------AACAATT------------A
droSec2	scaffold_0:7944362-7944490 -	dse-mir-263b	Known_mirbase	T----------------------------------------------------TGCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGACTTGAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAACTTAAAAACCG-GCTTTATACAACGATTTC-TA----------------AACAATTACAATT-TAAACA-ATAT-----------
droYak3	3L:18445391-18445487 -	dya-mir-263b-1	Known_mirbase	T-----------------------------------------------------GCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGACTTTAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAATTTAATCAACG-GCTCTATACAAC-------------------------------------------------------------
droEre2	scaffold_4784:18090146-18090255 -	der-mir-263b	Known_mirbase	A-------------------------------------------------T--AGCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGATTTTAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAATTTAATCAACA-GCTCCATACAACGA-----TA----------------AAAAATT-----------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

TGTTTAGCTTAGTTTAGCTTAGTTTGAGACAACGACTACGGCGATCGTTAT--TGCTGGCATTGGCTCTTGGCACTGGGAGAATTCACAGTTGGTTTTCA---TATATTCTGTGGTTCTGCGGGTGCCCAAAATCGAATGTTCG-GCTCGAAACAGCAG----CTG----------------AAAAGTTTCAGCCCTTAACAAATATGTATGTTCATA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...................................................................CTTGGCACTGGGAGAATTCA...................................................................................................................................	20	1	7464.00	7464	0	4	16	1103	5642	699
...................................................................CTTGGCACTGGGAGAATTCAC..................................................................................................................................	21	1	5895.00	5895	1	11	30	1142	4076	635
...................................................................CTTGGCACTGGGAGAATTCACA.................................................................................................................................	22	1	2671.00	2671	2	4	108	931	1299	327
...................................................................CTTGGCACTGGGAGAATTC....................................................................................................................................	19	1	2426.00	2426	0	0	1	313	1829	283
...................................................................CTTGGCACTGGGAGAATTCACAG................................................................................................................................	23	1	2156.00	2156	24	2	180	841	802	307
...................................................................CTTGGCACTGGGAGAATT.....................................................................................................................................	18	1	165.00	165	0	0	2	17	139	7
...................................................................CTTGGCACTGGGAGAATTCAA..................................................................................................................................	21	1	60.00	60	0	0	0	9	47	4
...................................................................CTTGGCACTGGGAGAATTT....................................................................................................................................	19	1	47.00	47	0	0	0	8	35	4
....................................................................TTGGCACTGGGAGAATTCAC..................................................................................................................................	20	1	36.00	36	0	0	0	11	22	3
....................................................................TTGGCACTGGGAGAATTCA...................................................................................................................................	19	1	34.00	34	0	1	0	5	26	2
...................................................................CTTGGCACTGGGAGAATTCT...................................................................................................................................	20	1	33.00	33	0	0	0	3	27	3
...................................................................CTTGGCACTGGGAGAATTCACAA................................................................................................................................	23	1	28.00	28	2	0	1	10	14	1
...................................................................CTTGGCACTGGGAGAATTCACT.................................................................................................................................	22	1	23.00	23	0	0	0	5	17	1
...................................................................CTTGGCACTGGGAGAATTCAT..................................................................................................................................	21	1	21.00	21	0	0	0	2	19	0
...................................................................CTTGGCACTGGGAGAATTCG...................................................................................................................................	20	1	19.00	19	0	0	0	1	18	0
....................................................................TTGGCACTGGGAGAATTCACA.................................................................................................................................	21	1	17.00	17	0	0	0	8	6	3
....................................................................TTGGCACTGGGAGAATTCACAG................................................................................................................................	22	1	16.00	16	0	0	4	9	2	1
....................................................................TTGGCACTGGGAGAATTC....................................................................................................................................	18	1	13.00	13	0	0	0	1	12	0
...................................................................CTTGGCACTGGGAGAATTCACC.................................................................................................................................	22	1	13.00	13	0	0	0	2	11	0
...................................................................CTTGGCACTGGGAGAATTCC...................................................................................................................................	20	1	12.00	12	0	0	0	3	9	0
...................................................................CTTGGCACTGGGAGAATTCACAGT...............................................................................................................................	24	1	11.00	11	0	0	1	5	5	0
...................................................................CTTGGCACTGGGAGAATTCACAGA...............................................................................................................................	24	1	6.00	6	0	0	1	2	3	0
...................................................................CTTGGCACTGGGAGAATTCACG.................................................................................................................................	22	1	6.00	6	0	0	0	0	5	1
...................................................................CTTGGCACTGGGAGAATTCACAT................................................................................................................................	23	1	5.00	5	0	0	0	2	2	1
...................................................................CTTGGCACTGGGAGAATTA....................................................................................................................................	19	2	5.00	10	0	0	0	1	9	0
...................................................................CTTGGCACTGGGAGAATTCACAC................................................................................................................................	23	1	4.00	4	0	0	0	2	2	0
...................................................................CTTGGCACTGGGAGAATTCTT..................................................................................................................................	21	1	3.00	3	0	0	0	0	2	1
...................................................................CTTGGCACTGGGAGAATTCAG..................................................................................................................................	21	1	3.00	3	0	1	0	0	2	0
........................................................................CACTGGGAGAATTCACAG................................................................................................................................	18	1	3.00	3	2	0	0	1	0	0
..............................................GTTAT--TGCTGGCATTGGCT.......................................................................................................................................................	19	1	2.00	2	0	0	2	0	0	0

dp5

TGTTTAGCTTAGTTTAGCTTAGTTTGAGACAACGACTACGGCGATCGTTAT--TGCTGGCATTGGCTCTTGGCACTGGGAGAATTCACAGTTGGTTTCCA---TATATTCTGTGGTTCTGCGGGTGCC-AAAATCGAATGTTCG-GCTCGAAACAGCAG----CTG----------------AAAAGTTTCAGCC-TTAACAAATATATATGTTCATA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...................................................................CTTGGCACTGGGAGAATTCAC..................................................................................................................................	21	1	5907.00	5907	0	136	2	16	44	1158	2599	6	17	1929
...................................................................CTTGGCACTGGGAGAATTCACA.................................................................................................................................	22	1	4625.00	4625	0	74	16	10	163	1104	1883	9	4	1362
...................................................................CTTGGCACTGGGAGAATTCA...................................................................................................................................	20	1	4381.00	4381	0	209	1	1	20	1169	2771	0	5	205
...................................................................CTTGGCACTGGGAGAATTCACAG................................................................................................................................	23	1	3007.00	3007	0	60	154	17	421	848	1051	1	2	453
...................................................................CTTGGCACTGGGAGAATTC....................................................................................................................................	19	1	1163.00	1163	2	71	1	8	7	329	714	0	0	31
...................................................................CTTGGCACTGGGAGAATT.....................................................................................................................................	18	1	53.00	53	0	9	0	0	0	30	11	0	0	3
....................................................................TTGGCACTGGGAGAATTCAC..................................................................................................................................	20	1	49.00	49	0	11	0	0	1	9	19	0	1	8
...................................................................CTTGGCACTGGGAGAATTCACAGT...............................................................................................................................	24	1	42.00	42	0	0	4	1	1	14	6	0	1	15
...................................................................CTTGGCACTGGGAGAATTT....................................................................................................................................	19	1	41.00	41	0	4	0	0	0	8	29	0	0	0
....................................................................TTGGCACTGGGAGAATTCA...................................................................................................................................	19	1	40.00	40	0	18	0	0	0	5	17	0	0	0
....................................................................TTGGCACTGGGAGAATTCACA.................................................................................................................................	21	1	37.00	37	0	11	0	0	2	7	13	0	0	4
....................................................................TTGGCACTGGGAGAATTCACAG................................................................................................................................	22	1	33.00	33	0	6	1	0	7	7	6	0	0	6
...................................................................CTTGGCACTGGGAGAATTCT...................................................................................................................................	20	1	32.00	32	0	4	0	0	0	2	26	0	0	0
...................................................................CTTGGCACTGGGAGAATTCACAA................................................................................................................................	23	1	30.00	30	0	0	2	1	0	7	7	0	0	13
...................................................................CTTGGCACTGGGAGAATTCAA..................................................................................................................................	21	1	26.00	26	0	2	0	0	0	13	7	0	0	4
...................................................................CTTGGCACTGGGAGAATTCACT.................................................................................................................................	22	1	15.00	15	0	0	0	0	0	8	7	0	0	0
...............................................................................................................GTGGTTCTGCGGGTGCC-AAAAT....................................................................................	22	1	12.00	12	0	2	8	0	0	0	1	0	0	1
...................................................................CTTGGCACTGGGAGAATTCACC.................................................................................................................................	22	1	10.00	10	0	0	0	0	0	4	6	0	0	0
...................................................................CTTGGCACTGGGAGAATTCACAC................................................................................................................................	23	1	10.00	10	0	0	3	0	1	4	1	0	1	0
....................................................................TTGGCACTGGGAGAATTC....................................................................................................................................	18	1	9.00	9	0	2	0	0	0	2	5	0	0	0
...................................................................CTTGGCACTGGGAGAATTCACAT................................................................................................................................	23	1	7.00	7	0	0	0	0	0	5	1	0	0	1
...................................................................CTTGGCACTGGGAGAATTCACAGA...............................................................................................................................	24	1	6.00	6	0	1	0	1	0	1	1	0	0	2
...................................................................CTTGGCACTGGGAGAATTCC...................................................................................................................................	20	1	6.00	6	0	0	0	0	0	2	4	0	0	0
...................................................................CTTGGCACTGGGAGAATTCG...................................................................................................................................	20	1	5.00	5	0	0	0	0	0	1	4	0	0	0
...................................................................CTTGGCACTGGGAGAATTCAT..................................................................................................................................	21	1	4.00	4	0	0	0	0	1	2	1	0	0	0
...................................................................CTTGGCACTGGGAGAATTCACAAA...............................................................................................................................	24	1	3.00	3	0	0	0	0	0	1	0	0	0	2
...................................................................CTTGGCACTGGGAGAATTCACAGTT..............................................................................................................................	25	1	3.00	3	0	1	0	0	0	1	1	0	0	0
.....................................................................TGGCACTGGGAGAATTCAC..................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................GTGGTTCTGCGGGTGCC-AAAA.....................................................................................	21	1	2.00	2	0	0	0	0	2	0	0	0	0	0
..................................................................TCTTGGCACTGGGAGAATTCAC..................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCACG.................................................................................................................................	22	1	2.00	2	0	0	0	0	0	2	0	0	0	0
..............................................................................................................TGTGGTTCTGCGGGTGCC-AAAA.....................................................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0
...............................................................................................................GTGGTTCTGCGGGTGCC-AAAAC....................................................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0
....................................................................TTGGCACTGGGAGAATTT....................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................TGGCACTGGGAGAATTCACAG................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................TTAT--TGCTGGCATTGGCT.......................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCTT..................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
....................................................................TTGGCACTGGGAGAATTCACAGT...............................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..............................................................................................................TGTGGTTCTGCGGGTGCC-.........................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................CACTGGGAGAATTCAC..................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	1
...................................................................CTTGGCACTGGGAGAATTA....................................................................................................................................	19	2	1.00	2	0	0	0	0	0	2	0	0	0	0
...............................................................................................................GTGGTTCTGCGGGTGCC-A........................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droWil2

T-----------------------------------------------------GCTCACAATGCATCTTGGCACTGGGAGAATTCACAGTTGATTCTTATTCGATATTCTGTGGTTCTGCGGGTGCC-AAAATCTAATGTTTGAGCTGTGATCATCGA-----AA---AAGAAATCAAATGAAAACTTTAAACC-----------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................................................................CTTGGCACTGGGAGAATTCACAG................................................................................................................................	23	1	68864.00	68864	85	88	800	42095	25796
...................................................................CTTGGCACTGGGAGAATTCACA.................................................................................................................................	22	1	25596.00	25596	56	53	911	8345	16231
...................................................................CTTGGCACTGGGAGAATTCAC..................................................................................................................................	21	1	23686.00	23686	45	25	650	1491	21475
...................................................................CTTGGCACTGGGAGAATTCA...................................................................................................................................	20	1	9011.00	9011	7	14	1781	306	6903
...................................................................CTTGGCACTGGGAGAATTC....................................................................................................................................	19	1	7679.00	7679	34	2	444	44	7155
....................................................................TTGGCACTGGGAGAATTCACAG................................................................................................................................	22	1	313.00	313	0	8	9	175	121
...................................................................CTTGGCACTGGGAGAATTCACAGT...............................................................................................................................	24	1	309.00	309	0	1	4	172	132
...................................................................CTTGGCACTGGGAGAATTCACAT................................................................................................................................	23	1	144.00	144	0	0	2	96	46
....................................................................TTGGCACTGGGAGAATTCACA.................................................................................................................................	21	1	125.00	125	0	0	6	46	73
....................................................................TTGGCACTGGGAGAATTCAC..................................................................................................................................	20	1	118.00	118	0	1	5	5	107
...................................................................CTTGGCACTGGGAGAATTCAA..................................................................................................................................	21	1	105.00	105	0	0	3	2	100
...................................................................CTTGGCACTGGGAGAATTCT...................................................................................................................................	20	1	94.00	94	0	0	12	0	82
...................................................................CTTGGCACTGGGAGAATTCACAGA...............................................................................................................................	24	1	93.00	93	0	0	1	50	42
...............................................................................................................GTGGTTCTGCGGGTGCC-AAAAT....................................................................................	22	1	90.00	90	0	1	0	76	13
...................................................................CTTGGCACTGGGAGAATT.....................................................................................................................................	18	1	87.00	87	1	2	22	2	60
...................................................................CTTGGCACTGGGAGAATTCACAA................................................................................................................................	23	1	77.00	77	1	1	1	18	56
...................................................................CTTGGCACTGGGAGAATTCACAC................................................................................................................................	23	1	64.00	64	4	0	2	27	31
...................................................................CTTGGCACTGGGAGAATTCACT.................................................................................................................................	22	1	50.00	50	0	2	3	0	45
...................................................................CTTGGCACTGGGAGAATTT....................................................................................................................................	19	1	41.00	41	0	1	3	1	36
...................................................................CTTGGCACTGGGAGAATTCACC.................................................................................................................................	22	1	37.00	37	0	0	2	6	29
....................................................................TTGGCACTGGGAGAATTCA...................................................................................................................................	19	1	37.00	37	0	2	10	2	23
....................................................................TTGGCACTGGGAGAATTC....................................................................................................................................	18	1	33.00	33	0	0	2	0	31
...................................................................CTTGGCACTGGGAGAATTCACG.................................................................................................................................	22	1	27.00	27	1	0	0	11	15
...................................................................CTTGGCACTGGGAGAATTCACAGTT..............................................................................................................................	25	1	22.00	22	0	0	0	13	9
...................................................................CTTGGCACTGGGAGAATTCAT..................................................................................................................................	21	1	20.00	20	0	0	0	0	20
...................................................................CTTGGCACTGGGAGAATTCC...................................................................................................................................	20	1	17.00	17	0	0	1	1	15
...............................................................................................................GTGGTTCTGCGGGTGCC-AAAA.....................................................................................	21	1	17.00	17	0	0	0	16	1
...................................................................CTTGGCACTGGGAGAATTA....................................................................................................................................	19	2	15.50	31	0	0	2	0	29
...................................................................CTTGGCACTGGGAGAATTCG...................................................................................................................................	20	1	15.00	15	0	0	3	0	12
...................................................................CTTGGCACTGGGAGAATTCAG..................................................................................................................................	21	1	15.00	15	0	0	2	6	7
..............................................................................................................TGTGGTTCTGCGGGTGCC-AAAA.....................................................................................	22	1	12.00	12	0	0	0	12	0
.....................................................................TGGCACTGGGAGAATTCAC..................................................................................................................................	19	1	10.00	10	0	0	0	0	10
..............................................................................................................TGTGGTTCTGCGGGTGCC-A........................................................................................	19	1	9.00	9	0	0	0	8	1
.......................................................................GCACTGGGAGAATTCACAG................................................................................................................................	19	1	9.00	9	0	0	0	3	6
....................................................................TTGGCACTGGGAGAATTCACAGT...............................................................................................................................	23	1	8.00	8	0	0	0	4	4
.....................................................................TGGCACTGGGAGAATTCACAG................................................................................................................................	21	1	7.00	7	0	1	0	1	5
........................................................................CACTGGGAGAATTCACAG................................................................................................................................	18	1	7.00	7	3	1	0	3	0
.....................................................................TGGCACTGGGAGAATTCACA.................................................................................................................................	20	1	7.00	7	0	1	0	0	6
......................................................................GGCACTGGGAGAATTCAC..................................................................................................................................	18	1	6.00	6	0	0	0	0	6
...................................................................CTTGGCACTGGGAGAATTCACAGC...............................................................................................................................	24	1	5.00	5	0	0	0	5	0
...................................................................CTTGGCACTGGGAGAATTCCAG.................................................................................................................................	22	1	5.00	5	0	0	0	2	3
..............................................................................................................TGTGGTTCTGCGGGTGCC-AAA......................................................................................	21	1	4.00	4	0	0	0	3	1
......................................................................GGCACTGGGAGAATTCACAG................................................................................................................................	20	1	4.00	4	0	0	0	1	3
.......................................................................GCACTGGGAGAATTCACA.................................................................................................................................	18	1	4.00	4	0	0	0	3	1
...............................................................................................................GTGGTTCTGCGGGTGCC-AAA......................................................................................	20	1	4.00	4	0	0	0	3	1

droVir3

C-----------------------------------TACGGAAAGCAGAGC--TACTGCCATTTCATCTTGGCACTGGGAGAATTCACAGTCGATTACAT---AATATTCTGTGGTTCTGCGGGTGCC-AAAATGTAATGTGTG-GACCAAGACAGC------CTG----------------AAA---------C-TAAACAATTGTG--------TA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
...................................................................CTTGGCACTGGGAGAATTCA...................................................................................................................................	20	1	20306.00	20306	6	6	107	0	0	1	2	2	0	3	0	0	0	0	1134	780	445	1033	1639	765	10	1563	1273	0	1	0	0	1	16	8	4	20	1	15	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	2544	8908	0	1	0	0	1	0	0	0	0	0	0	0	0	1	1	0	0
...................................................................CTTGGCACTGGGAGAATTCACA.................................................................................................................................	22	1	17768.00	17768	13	31	42	15	0	4	0	1	0	1	1	0	0	1	1903	887	717	1600	1415	756	7	1398	1469	0	0	0	0	1	18	18	6	20	0	9	0	0	0	4	0	2	0	0	0	0	0	0	0	0	1	2	3	4	0	3	2	0	0	21	16	188	1432	5685	0	2	2	0	0	3	0	0	0	0	0	0	2	22	17	9	15
...................................................................CTTGGCACTGGGAGAATTCACAG................................................................................................................................	23	1	16599.00	16599	30	43	29	106	0	5	0	0	0	8	0	0	0	0	2239	987	648	1784	1123	967	13	1760	2133	1	1	0	2	0	25	20	14	35	2	7	1	0	7	9	1	4	1	1	0	0	0	0	1	1	1	2	22	6	16	13	17	0	0	15	85	619	1095	1450	0	4	3	3	6	12	0	2	0	0	2	0	8	490	385	139	196
...................................................................CTTGGCACTGGGAGAATTCAC..................................................................................................................................	21	1	13385.00	13385	19	26	58	3	0	1	0	1	1	6	0	0	0	0	1602	866	572	1459	1837	719	7	1742	1479	1	2	1	0	2	12	16	8	35	0	8	0	1	1	2	1	3	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	4	6	44	1217	1578	0	0	8	1	0	2	0	0	0	0	0	0	0	3	7	7	16
...................................................................CTTGGCACTGGGAGAATTC....................................................................................................................................	19	1	4610.00	4610	38	64	17	0	0	1	3	0	0	0	2	0	0	0	191	132	105	210	308	176	0	314	287	0	0	0	2	0	2	6	2	3	0	6	0	0	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1136	1599	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
...................................................................CTTGGCACTGGGAGAATT.....................................................................................................................................	18	1	289.00	289	1	1	6	0	0	0	0	0	0	0	0	0	0	0	11	15	6	12	24	12	0	26	20	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	73	69	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	1	1
....................................................................TTGGCACTGGGAGAATTCACAG................................................................................................................................	22	1	142.00	142	0	1	4	4	0	0	0	0	0	0	0	0	0	0	14	6	5	16	9	2	0	7	16	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	1	1	10	13	15	0	0	0	0	0	0	0	0	0	0	0	0	0	1	8	4	1
....................................................................TTGGCACTGGGAGAATTCA...................................................................................................................................	19	1	133.00	133	0	0	12	0	0	0	0	0	0	0	0	0	0	0	10	4	1	3	6	3	0	10	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20	56	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCACAGT...............................................................................................................................	24	1	132.00	132	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26	7	5	9	9	4	0	6	20	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	1	8	19	0	0	0	0	1	0	0	0	0	0	0	0	0	6	5	0	3
....................................................................TTGGCACTGGGAGAATTCACA.................................................................................................................................	21	1	131.00	131	0	0	6	0	0	0	0	0	0	0	0	0	0	0	16	4	6	15	6	6	0	5	11	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	11	41	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0
...................................................................CTTGGCACTGGGAGAATTT....................................................................................................................................	19	1	104.00	104	0	0	4	0	0	0	0	0	0	0	0	0	0	0	1	4	4	4	4	1	0	7	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25	43	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCAA..................................................................................................................................	21	1	99.00	99	1	1	0	0	0	0	0	0	0	0	0	0	0	0	9	11	5	7	10	7	0	8	12	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCACAA................................................................................................................................	23	1	99.00	99	0	0	0	0	0	0	0	0	0	0	0	0	1	0	16	9	2	12	6	11	0	11	16	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	7	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0
....................................................................TTGGCACTGGGAGAATTCAC..................................................................................................................................	20	1	87.00	87	0	0	4	1	0	0	0	0	0	0	0	0	0	0	10	8	2	7	10	5	0	17	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCACAGA...............................................................................................................................	24	1	82.00	82	0	0	1	0	0	0	0	0	0	0	0	0	0	0	8	8	8	6	5	3	1	4	6	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	6	10	0	0	0	0	0	0	0	0	0	0	0	0	0	4	5	2	1
...................................................................CTTGGCACTGGGAGAATTCT...................................................................................................................................	20	1	81.00	81	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	3	1	2	2	1	0	2	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22	38	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCACC.................................................................................................................................	22	1	55.00	55	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	3	1	11	8	2	0	5	3	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................CACTGGGAGAATTCACAG................................................................................................................................	18	1	53.00	53	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	4	3	5	9	1	0	0	1	22	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	0	0
...................................................................CTTGGCACTGGGAGAATTCACAT................................................................................................................................	23	1	49.00	49	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	3	0	7	3	0	0	7	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	7	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................TTGGCACTGGGAGAATTCACAGT...............................................................................................................................	23	1	33.00	33	0	0	0	3	0	0	0	0	0	0	0	0	0	0	3	2	0	0	1	0	0	2	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	2	1	0	0	0	2	1	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	4	3	1	0
...................................................................CTTGGCACTGGGAGAATTCACG.................................................................................................................................	22	1	32.00	32	1	4	0	0	0	0	0	0	0	0	0	0	0	0	2	1	1	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	6	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCG...................................................................................................................................	20	1	31.00	31	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	1	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................TTGGCACTGGGAGAATTC....................................................................................................................................	18	1	30.00	30	1	1	4	0	0	0	0	1	0	0	0	0	0	0	0	2	1	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................GTGGTTCTGCGGGTGCC-AAAAT....................................................................................	22	1	28.00	28	0	0	3	5	0	0	0	0	0	0	0	0	0	0	2	1	0	4	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	2	0	0	0	0	0	0	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCACT.................................................................................................................................	22	1	28.00	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	1	2	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCC...................................................................................................................................	20	1	28.00	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	2	4	2	0	7	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCAT..................................................................................................................................	21	1	27.00	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	1	1	1	4	1	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCACAC................................................................................................................................	23	1	25.00	25	0	2	1	2	0	0	0	0	0	0	0	0	0	0	3	0	0	1	2	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	5	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................TCTTGGCACTGGGAGAATTCA...................................................................................................................................	21	1	24.00	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	1	2	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................TCTTGGCACTGGGAGAATTCACA.................................................................................................................................	23	1	16.00	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	0	0	1	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCACAGTT..............................................................................................................................	25	1	15.00	15	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	2	1	0	1	0	2	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................TCTTGGCACTGGGAGAATTCAC..................................................................................................................................	22	1	13.00	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	2	0	0	0	2	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTA....................................................................................................................................	19	2	12.00	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	2	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................CACTGGGAGAATTCACA.................................................................................................................................	17	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................TGGCACTGGGAGAATTCACAG................................................................................................................................	21	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................TGGCACTGGGAGAATTCA...................................................................................................................................	18	1	7.00	7	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................GGCACTGGGAGAATTCACA.................................................................................................................................	19	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................CTGGGAGAATTCACAG................................................................................................................................	16	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................TCTTGGCACTGGGAGAATTC....................................................................................................................................	20	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................GGCACTGGGAGAATTCACAG................................................................................................................................	20	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTTT...................................................................................................................................	20	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................TGGCACTGGGAGAATTCACA.................................................................................................................................	20	1	5.00	5	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

T----------------------------------------------------GGTTAGCTTCGCTTCGCTTTGCTTGTTGTAGCTGCTG---------------------CTGCTGCTGCTGCTGCT-G----------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...........................................................CTTCGCTTCGCTTTGCTT.............................................................................................................................................	18	6	0.17	1	0	1	0	0	0	0

droGri2

T-----------------------------------------------------ACTGCCATTACATCTTGGCACTGGGAGAATTCACAGTTGGTTATAT---AATATTCTGTGGTTCTGCGGGTGCC-AAACTGTAATGTGTG-GACATAGAAACAAC----CTG----------------AAAA--------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...................................................................CTTGGCACTGGGAGAATTCACA.................................................................................................................................	22	1	1443.00	1443	43	1400
...................................................................CTTGGCACTGGGAGAATTCA...................................................................................................................................	20	1	834.00	834	38	796
...................................................................CTTGGCACTGGGAGAATTCACAG................................................................................................................................	23	1	393.00	393	44	349
...................................................................CTTGGCACTGGGAGAATTCAC..................................................................................................................................	21	1	239.00	239	36	203
...................................................................CTTGGCACTGGGAGAATTC....................................................................................................................................	19	1	58.00	58	1	57
....................................................................TTGGCACTGGGAGAATTCA...................................................................................................................................	19	1	13.00	13	5	8
....................................................................TTGGCACTGGGAGAATTCACA.................................................................................................................................	21	1	12.00	12	5	7
....................................................................TTGGCACTGGGAGAATTCACAG................................................................................................................................	22	1	8.00	8	7	1
...............................................................................................................GTGGTTCTGCGGGTGCC-AAACT....................................................................................	22	1	7.00	7	7	0
...................................................................CTTGGCACTGGGAGAATTCACAGT...............................................................................................................................	24	1	7.00	7	1	6
...................................................................CTTGGCACTGGGAGAATTCACT.................................................................................................................................	22	1	5.00	5	1	4
....................................................................TTGGCACTGGGAGAATTCAC..................................................................................................................................	20	1	4.00	4	3	1
...................................................................CTTGGCACTGGGAGAATTCACAT................................................................................................................................	23	1	4.00	4	0	4
...................................................................CTTGGCACTGGGAGAATTCACG.................................................................................................................................	22	1	4.00	4	0	4
...................................................................CTTGGCACTGGGAGAATTT....................................................................................................................................	19	1	3.00	3	1	2
...................................................................CTTGGCACTGGGAGAATTCACAA................................................................................................................................	23	1	3.00	3	0	3
...................................................................CTTGGCACTGGGAGAATTCACC.................................................................................................................................	22	1	2.00	2	0	2
...................................................................CTTGGCACTGGGAGAATTCACAC................................................................................................................................	23	1	2.00	2	0	2
...................................................................CTTGGCACTGGGAGAATTCAA..................................................................................................................................	21	1	2.00	2	1	1
.....................................................................TGGCACTGGGAGAATTCACAG................................................................................................................................	21	1	2.00	2	2	0
...................................................................CTTGGCACTGGGAGAATTCACAGA...............................................................................................................................	24	1	2.00	2	0	2
...............................................................................................................GTGGTTCTGCGGGTGCC-AAAC.....................................................................................	21	1	1.00	1	1	0
...................................................................CTTGGCACTGGGAGAATTCACAAA...............................................................................................................................	24	1	1.00	1	0	1
...............................................................................................................GTGGTTCTGCGGGTGCC-AAACTT...................................................................................	23	1	1.00	1	1	0
....................................................................TTGGCACTGGGAGAATTC....................................................................................................................................	18	1	1.00	1	1	0
...................................................................CTTGGCACTGGGAGAATTCC...................................................................................................................................	20	1	1.00	1	0	1
....................................................................TTGGCACTGGGAGAATTCACAGT...............................................................................................................................	23	1	1.00	1	1	0
................................................................................................................TGGTTCTGCGGGTGCC-AAACT....................................................................................	21	1	1.00	1	1	0
.....................................................................TGGCACTGGGAGAATTCACA.................................................................................................................................	20	1	1.00	1	1	0
..............................................................................................................TGTGGTTCTGCGGGTGCC-AAACT....................................................................................	23	1	1.00	1	1	0
..................................................................TCTTGGCACTGGGAGAATTCACAG................................................................................................................................	24	1	1.00	1	1	0
......................................................................GGCACTGGGAGAATTCAC..................................................................................................................................	18	1	1.00	1	1	0
.....................................................................TGGCACTGGGAGAATTCA...................................................................................................................................	18	1	1.00	1	0	1

droAna3

T-----------------------------------------------------GCTGTCTTTGAATCTTGGCACTGGGAGAATTCACAGTTGATTTTAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAATTGAAATAATG-GCCTAAAAC----------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................................CTTGGCACTGGGAGAATTCAC..................................................................................................................................	21	1	17321.00	17321	72	8	18	886	446	15891
...................................................................CTTGGCACTGGGAGAATTCACAG................................................................................................................................	23	1	15088.00	15088	112	99	97	625	635	13520
...................................................................CTTGGCACTGGGAGAATTCA...................................................................................................................................	20	1	12018.00	12018	79	0	7	1259	1904	8769
...................................................................CTTGGCACTGGGAGAATTCACA.................................................................................................................................	22	1	10883.00	10883	84	13	43	833	1233	8677
...................................................................CTTGGCACTGGGAGAATTC....................................................................................................................................	19	1	6895.00	6895	16	0	0	457	417	6005
...................................................................CTTGGCACTGGGAGAATTCACAT................................................................................................................................	23	1	238.00	238	0	0	3	1	3	231
...................................................................CTTGGCACTGGGAGAATTCT...................................................................................................................................	20	1	113.00	113	1	0	0	16	8	88
...................................................................CTTGGCACTGGGAGAATTCAA..................................................................................................................................	21	1	110.00	110	1	0	0	8	7	94
...................................................................CTTGGCACTGGGAGAATTCACAGT...............................................................................................................................	24	1	103.00	103	0	0	1	5	4	93
....................................................................TTGGCACTGGGAGAATTCACAG................................................................................................................................	22	1	101.00	101	11	0	1	5	1	83
...................................................................CTTGGCACTGGGAGAATTT....................................................................................................................................	19	1	98.00	98	1	0	0	17	11	69
....................................................................TTGGCACTGGGAGAATTCAC..................................................................................................................................	20	1	91.00	91	10	0	0	4	1	76
...................................................................CTTGGCACTGGGAGAATT.....................................................................................................................................	18	1	89.00	89	1	0	0	38	3	47
...................................................................CTTGGCACTGGGAGAATTCAT..................................................................................................................................	21	1	74.00	74	1	0	0	1	6	66
....................................................................TTGGCACTGGGAGAATTCA...................................................................................................................................	19	1	59.00	59	10	0	0	9	9	31
....................................................................TTGGCACTGGGAGAATTC....................................................................................................................................	18	1	57.00	57	1	0	0	7	2	47
...................................................................CTTGGCACTGGGAGAATTCACT.................................................................................................................................	22	1	54.00	54	0	0	1	10	3	40
....................................................................TTGGCACTGGGAGAATTCACA.................................................................................................................................	21	1	53.00	53	7	0	0	1	5	40
...................................................................CTTGGCACTGGGAGAATTCAG..................................................................................................................................	21	1	52.00	52	0	0	0	0	5	47
...................................................................CTTGGCACTGGGAGAATTCACAGA...............................................................................................................................	24	1	44.00	44	1	0	0	2	1	40
...................................................................CTTGGCACTGGGAGAATTA....................................................................................................................................	19	1	34.00	34	0	0	0	3	4	27
...................................................................CTTGGCACTGGGAGAATTCACAA................................................................................................................................	23	1	29.00	29	0	0	0	0	2	27
...............................................................................................................GTGGTTCTGCGGGTGCC-AAAAT....................................................................................	22	1	25.00	25	2	4	3	0	0	16
...................................................................CTTGGCACTGGGAGAATTCACG.................................................................................................................................	22	1	25.00	25	0	0	0	3	0	22
...................................................................CTTGGCACTGGGAGAATTCACAC................................................................................................................................	23	1	22.00	22	0	5	0	2	1	14
...................................................................CTTGGCACTGGGAGAATTCACAGTT..............................................................................................................................	25	1	15.00	15	0	1	0	1	2	11
...................................................................CTTGGCACTGGGAGAATTCG...................................................................................................................................	20	1	13.00	13	0	0	0	1	0	12
...................................................................CTTGGCACTGGGAGAATTCACC.................................................................................................................................	22	1	12.00	12	0	0	0	3	1	8
...................................................................CTTGGCACTGGGAGAATTCC...................................................................................................................................	20	1	8.00	8	0	0	0	2	1	5
...................................................................CTTGGCACTGGGAGAATTTT...................................................................................................................................	20	1	7.00	7	0	0	0	1	1	5
...............................................................................................................GTGGTTCTGCGGGTGCC-AAAA.....................................................................................	21	1	6.00	6	1	1	0	0	0	4
...................................................................CTTGGCACTGGGAGAATTCACTT................................................................................................................................	23	1	5.00	5	0	0	0	0	0	5
...............................................................................................................GTGGTTCTGCGGGTGCC-A........................................................................................	18	1	5.00	5	4	0	0	0	0	1
........................................................................CACTGGGAGAATTCACAG................................................................................................................................	18	1	4.00	4	2	0	0	0	0	2
.....................................................................TGGCACTGGGAGAATTCAC..................................................................................................................................	19	1	4.00	4	0	0	0	0	0	4
...................................................................CTTGGCACTGGGAGAATTG....................................................................................................................................	19	1	4.00	4	0	0	0	0	1	3
.....................................................................TGGCACTGGGAGAATTCACA.................................................................................................................................	20	1	4.00	4	2	0	0	0	1	1

droBip1

T-----------------------------------------------TGC--TGCTGTCTTTGAATCTTGGCACTGGGAGAATTCACAGTTGATTTTTT-----TATTCTGTGGTTCTGCGGGTGCC-AAAATTTAAATAATA-GCCTAAAACCTCAA--------AAAATTAAATATTT--------TAT-----------------------AAA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

T----------------------------------------------------TGCCTTCTTTGAGCCTTGGCACTGGGAGAATTCACAGTTGATTTTC----AATATTCTGTGGTTCTGCGGGTGCC-AAAACTTAA--------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

------------------------------------------------------GCTGGCTGTGAATCTTGGCACTGGGAGAATTCACAGTTGATTTCAC-----TATTCTGTGGTTCTGCGGGTGCC-AAAATTCACGTTTCA-GCTTTAAACAACAAAGGT-TA----------------AAAA--------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

T-----------------------------------------------------GCTGACTTTGAATCTTGGCACTGGGAGAATTCACAGTTGATTTCAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAATTTAATCGACG-GCTTTAAACAACAT-TTC-TA-AAAGCAAATTATAT--------------------------------TAATA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

------------------------------------------------------GCTGCCTTTGAATCTTGGCACTGGGAGAATTCACAGTTGATTTTAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAATTTAACCGACA-GCTTTAAACAACAA-TTT-TAAAAAGCAAAATATAT---------------------------------AATA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

G------------------------------------------ATCTTCATTCAGCCGGCTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGACTTCAA-----AACTCTGTGGTTCTGCGGGTGCC-AAAATTTAATCCTCG-ACTCTGCACAACGA----CTA----------------AAAA--------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

T------------------------------------------------AT--AGCCGGCTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGATTTCAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAATTTAATCCACG-GCTCTAACCAACGA----CCT----------------AAAAAT------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

T-----------------------------------------------------GCTGACTTTGAATCTTGGCACTGGGAGAATTCACAGTTGATTTCAT-----TAGTCTGTGGTTCTGCGGGTGCC-AAAATTTAAGCTACA-GCTATAAGCAAC-------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

T----------------------------------------------------TGCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGACTTTAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAACTTAAA-------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...................................................................CTTGGCACTGGGAGAATTCA...................................................................................................................................	20	1	136070.00	136070	0	0	0	0	45	4	0	0	0	0	2	1	0	0	0	1	0	10	0	0	0	1	3	8	0	5	1	2	11	28	537	491	4	4	2	0	1	0	0	0	1	0	2	0	1	0	0	1	0	1	0	0	0	0	0	0	65	46	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	71	6	0	3	4	0	0	0	21	6	43	131	7	7	449	71	99	2	0	4	49	1018	26	0	0	4	0	1	10	23	1	7	1	0	46	7	567	119	5	86	0	285	31	65	1	251	37	316	228	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	1	0	61	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	1737	2224	0	1028	3	4	287	593	30	585	14	1725	20	3177	25	0	0	0	0	0	926	19	4	27	16	0	0	0	22	0	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	20	46	62	1	1	1	10	1	12	2	4	0	0	0	5	5	1	0	0	26	30	0	375	1214	57	0	0	2	917	812	2	627	0	0	1	0	2	1587	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	33	3	35	5	14	2	18	0	1	1	0	30	8631	7134	6125	9610	6	83	999	380	4	249	7	13	20	37	12345	2	6018	8454	0	0	9	7	40	0	2	7	0	1	2	3	1	0	0	0	4325	31565	6710	1393	2043	2700	3207	3	0	0	0	1	0
...................................................................CTTGGCACTGGGAGAATTCAC..................................................................................................................................	21	1	117603.00	117603	0	0	0	0	51	7	0	0	3	2	0	0	1	0	3	0	0	12	0	0	0	1	2	1	0	9	4	9	25	59	690	677	11	6	0	0	1	0	0	1	0	0	1	0	1	0	0	1	0	0	1	0	2	0	0	0	81	30	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	82	6	4	5	6	4	0	1	13	26	43	192	24	4	818	114	138	7	4	56	93	1544	29	2	2	11	2	7	22	29	4	14	17	3	112	4	498	60	1	25	0	137	42	146	2	286	65	415	234	0	0	0	0	0	0	0	1	0	0	0	0	3	9	0	0	0	0	2	1	71	1	0	3	0	0	0	0	3	0	0	0	0	0	0	0	2509	2648	0	1837	25	13	458	789	65	759	29	1844	98	3996	57	10	0	0	0	0	1285	37	5	39	16	0	0	0	42	0	21	0	0	2	0	0	1	2	2	8	0	0	0	0	0	0	0	0	8	17	41	100	1	4	10	41	10	15	14	9	2	0	0	1	19	1	0	0	186	213	0	233	1278	39	0	0	2	599	363	2	582	0	0	1	0	2	2801	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	10	53	7	28	5	31	7	27	0	0	1	0	18	5673	5659	3178	4596	22	269	652	321	9	86	6	12	24	51	8800	3	6188	9721	0	1	7	21	27	7	11	9	0	0	5	5	2	1	0	2	1881	24503	5175	785	2497	3690	3150	22	0	0	2	0	0
...................................................................CTTGGCACTGGGAGAATTCACAG................................................................................................................................	23	1	90481.00	90481	0	0	0	0	15	0	0	1	15	25	2	1	4	0	0	0	0	10	0	0	0	0	4	0	0	5	0	48	51	104	505	496	6	6	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	3	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	1	357	248	10	0	0	2	32	5	45	17	4	126	28	28	15	5	101	80	374	5	0	0	1	0	0	11	11	6	87	94	0	7	3	330	17	4	11	0	53	19	61	2	163	47	252	144	0	0	0	0	0	0	1	0	0	0	4	4	43	53	2	1	0	0	0	1	39	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1501	1281	0	923	104	54	281	618	124	551	59	1458	1344	2544	565	0	0	0	0	0	760	29	4	11	5	0	0	0	8	0	14	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	6	18	22	4	1	3	6	2	1	12	1	0	0	0	0	0	0	0	0	1093	1082	1	128	480	17	0	0	0	335	362	2	288	0	0	1	0	0	1522	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17	98	6	21	2	11	5	11	0	1	1	0	4	2624	2627	1865	2399	1742	7267	1039	512	5	69	0	1	9	37	4225	0	3045	5768	1	2	5	13	17	1	1	2	0	0	1	15	0	1	0	0	1636	25053	2434	715	1956	1418	1888	2	0	0	4	1	0
...................................................................CTTGGCACTGGGAGAATTC....................................................................................................................................	19	1	63866.00	63866	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	4	0	0	6	11	152	101	2	2	0	0	1	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	4	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	4	2	7	8	0	0	49	5	7	0	0	1	11	64	1	0	0	0	0	0	1	1	0	1	2	1	0	2	155	35	0	10	0	25	15	19	0	55	17	88	57	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	519	975	0	233	3	1	66	124	11	163	9	517	13	763	12	0	1	0	0	0	211	6	3	11	6	0	0	0	5	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	39	0	1	1	1	6	1	0	2	0	0	0	0	0	3	0	0	5	4	0	115	540	17	0	0	0	260	645	1	233	0	0	0	0	0	729	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	12	2	6	0	4	0	4	0	1	0	0	8	2736	1507	2128	3598	3	0	86	26	1	141	1	3	5	16	2491	1	1716	2654	0	1	0	2	14	0	3	0	0	0	0	0	0	0	4	0	2879	29827	2633	446	544	1580	1549	5	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCACA.................................................................................................................................	22	1	61024.00	61024	0	0	0	0	22	1	0	0	2	16	1	2	7	0	0	0	0	4	1	0	0	0	0	4	0	2	0	10	22	56	435	469	3	4	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	20	16	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	54	4	3	54	63	5	1	0	8	49	29	98	31	7	229	43	82	6	2	119	130	795	16	0	0	1	3	2	7	20	4	22	59	2	47	6	212	81	0	56	0	239	30	149	4	160	21	223	117	0	0	0	0	0	0	0	0	0	0	0	1	8	0	0	1	0	1	0	0	31	0	0	0	1	0	0	0	1	0	0	0	0	0	11	12	1329	1205	0	982	40	12	247	541	62	470	26	882	118	2049	45	8	0	0	0	0	732	42	0	34	6	0	0	0	18	0	24	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	17	17	33	2	4	10	19	2	7	13	6	1	0	0	1	33	11	0	0	526	429	0	124	492	15	0	0	4	452	273	0	275	0	0	0	0	0	1085	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	10	26	3	21	3	17	5	25	0	1	2	0	7	2270	2775	1472	1784	143	1432	1196	631	4	38	1	4	10	22	4624	1	2103	3755	0	3	2	6	16	1	4	5	1	0	8	9	2	1	5	2	1169	13051	2467	594	1556	1145	1387	5	0	1	2	1	0
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....................................................................TTGGCACTGGGAGAATTCACATC...............................................................................................................................	23	1	176.00	176	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	143	33	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCACT.................................................................................................................................	22	1	150.00	150	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	1	0	0	0	0	0	1	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	7	0	5	0	0	0	0	0	1	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	3	1	0	2	2	0	0	0	0	3	2	0	2	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	5	4	0	2	1	3	0	0	0	0	0	0	4	0	3	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	42	3	1	0	1	2	0	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCACG.................................................................................................................................	22	1	143.00	143	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	7	0	8	0	0	0	2	0	1	0	2	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	3	1	7	0	2	2	2	0	0	0	0	0	0	9	0	6	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	32	4	3	2	1	2	0	0	0	0	0	0
...............................................................................................................GTGGTTCTGCGGGTGCC-AAAA.....................................................................................	21	1	131.00	131	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43	37	0	0	0	1	0	1	1	1	1	2	0	0	1	0	3	1	7	0	0	0	0	0	0	0	0	0	9	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	2	0	0	0	0	0	0	0	0	0	0

droSim2

T----------------------------------------------------TGCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGACTTGAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAACTTAAAAACCG-GCTTTATACAACAAATTC-TT--------------------------------AACAATT------------A	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...................................................................CTTGGCACTGGGAGAATTCACAG................................................................................................................................	23	1	9641.00	9641	68	20	47	4	38	472	88	87	2995	2316	2	3502	0	0	0	0	2
...................................................................CTTGGCACTGGGAGAATTCACA.................................................................................................................................	22	1	4331.00	4331	29	8	3	0	29	215	93	109	1985	1244	3	610	0	3	0	0	0
...................................................................CTTGGCACTGGGAGAATTCAC..................................................................................................................................	21	1	2823.00	2823	70	14	3	5	153	1088	153	151	592	361	7	224	0	2	0	0	0
...................................................................CTTGGCACTGGGAGAATTCA...................................................................................................................................	20	1	535.00	535	16	7	0	4	9	76	93	89	131	76	6	24	1	3	0	0	0
...................................................................CTTGGCACTGGGAGAATTC....................................................................................................................................	19	1	405.00	405	165	31	0	1	19	152	8	9	9	1	1	4	0	3	0	1	1
...................................................................CTTGGCACTGGGAGAATT.....................................................................................................................................	18	1	107.00	107	5	1	0	0	13	80	3	0	1	3	1	0	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCACAGA...............................................................................................................................	24	1	55.00	55	1	0	0	0	0	0	1	0	30	17	0	6	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCACAGT...............................................................................................................................	24	1	43.00	43	0	0	0	0	1	1	0	2	16	11	0	12	0	0	0	0	0
....................................................................TTGGCACTGGGAGAATTCACAG................................................................................................................................	22	1	35.00	35	0	1	0	0	0	0	1	1	2	4	0	26	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCACAA................................................................................................................................	23	1	23.00	23	1	0	0	0	0	0	0	2	12	6	0	2	0	0	0	0	0
...............................................................................................................GTGGTTCTGCGGGTGCC-AAAAC....................................................................................	22	1	14.00	14	0	1	0	2	1	7	0	0	0	0	0	3	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCACAT................................................................................................................................	23	1	13.00	13	0	0	0	0	0	0	0	0	5	4	0	4	0	0	0	0	0
....................................................................TTGGCACTGGGAGAATTCACA.................................................................................................................................	21	1	12.00	12	0	0	0	0	0	1	0	0	6	1	0	4	0	0	0	0	0
....................................................................TTGGCACTGGGAGAATTCAC..................................................................................................................................	20	1	10.00	10	4	0	0	0	0	1	0	0	1	2	0	2	0	0	0	0	0
........................................................................CACTGGGAGAATTCACAG................................................................................................................................	18	1	10.00	10	2	1	5	0	0	0	0	0	2	0	0	0	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCACAGC...............................................................................................................................	24	1	7.00	7	0	0	0	0	0	0	0	0	5	0	0	2	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCACAC................................................................................................................................	23	1	6.00	6	1	0	2	0	0	0	0	0	1	0	0	2	0	0	0	0	0
...............................................................................................................GTGGTTCTGCGGGTGCC-A........................................................................................	18	1	5.00	5	2	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................GTGGTTCTGCGGGTGCC-AAA......................................................................................	20	1	5.00	5	0	0	0	0	0	3	0	0	0	0	0	2	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCAA..................................................................................................................................	21	1	4.00	4	1	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCACG.................................................................................................................................	22	1	4.00	4	1	1	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0
.......................................................................GCACTGGGAGAATTCACA.................................................................................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTA....................................................................................................................................	19	1	3.00	3	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCACT.................................................................................................................................	22	1	3.00	3	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0
.....................................................................TGGCACTGGGAGAATTCAC..................................................................................................................................	19	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
......................................................................GGCACTGGGAGAATTCACAG................................................................................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCAG..................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
.....................................................................TGGCACTGGGAGAATTCACA.................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
...............................................................................................................GTGGTTCTGCGGGTGCC-AAAA.....................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0
...................................................................CTTGGCACTGGGAGAATTCACAGTA..............................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
...............................................................................................................GTGGTTCTGCGGGTGCC-AA.......................................................................................	19	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAAT......................................................................................................................................	17	1	2.00	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
....................................................................TTGGCACTGGGAGAATTCA...................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCACAGAA..............................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
.....................................................................TGGCACTGGGAGAATT.....................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................CACTGGGAGAATTCACA.................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
......................................................................GGCACTGGGAGAATTCAC..................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCACC.................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droSec2

T----------------------------------------------------TGCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGACTTGAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAACTTAAAAACCG-GCTTTATACAACGATTTC-TA----------------AACAATTACAATT-TAAACA-ATAT-----------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...................................................................CTTGGCACTGGGAGAATTCA...................................................................................................................................	20	1	18329.00	18329	16	7623	389	10301
...................................................................CTTGGCACTGGGAGAATTCACAG................................................................................................................................	23	1	15116.00	15116	6	1479	8532	5099
...................................................................CTTGGCACTGGGAGAATTCACA.................................................................................................................................	22	1	14114.00	14114	9	2256	6533	5316
...................................................................CTTGGCACTGGGAGAATTCAC..................................................................................................................................	21	1	9069.00	9069	10	1951	524	6584
...................................................................CTTGGCACTGGGAGAATTC....................................................................................................................................	19	1	6278.00	6278	1	1119	20	5138
...................................................................CTTGGCACTGGGAGAATT.....................................................................................................................................	18	1	275.00	275	0	24	2	249
...................................................................CTTGGCACTGGGAGAATTT....................................................................................................................................	19	1	171.00	171	0	49	0	122
...................................................................CTTGGCACTGGGAGAATTCACAGT...............................................................................................................................	24	1	121.00	121	0	5	96	20
...................................................................CTTGGCACTGGGAGAATTCT...................................................................................................................................	20	1	121.00	121	0	39	0	82
....................................................................TTGGCACTGGGAGAATTCACAG................................................................................................................................	22	1	91.00	91	2	10	49	30
....................................................................TTGGCACTGGGAGAATTCACA.................................................................................................................................	21	1	89.00	89	3	12	35	39
....................................................................TTGGCACTGGGAGAATTCA...................................................................................................................................	19	1	87.00	87	1	26	0	60
...................................................................CTTGGCACTGGGAGAATTCACAGA...............................................................................................................................	24	1	73.00	73	0	10	39	24
...................................................................CTTGGCACTGGGAGAATTA....................................................................................................................................	19	1	50.00	50	0	15	0	35
....................................................................TTGGCACTGGGAGAATTCAC..................................................................................................................................	20	1	46.00	46	2	8	1	35
...................................................................CTTGGCACTGGGAGAATTCAA..................................................................................................................................	21	1	44.00	44	0	15	1	28
....................................................................TTGGCACTGGGAGAATTC....................................................................................................................................	18	1	39.00	39	0	1	0	38
...................................................................CTTGGCACTGGGAGAATTCACG.................................................................................................................................	22	1	32.00	32	0	5	16	11
...................................................................CTTGGCACTGGGAGAATTCACAA................................................................................................................................	23	1	25.00	25	0	3	6	16
...................................................................CTTGGCACTGGGAGAATTCACAGC...............................................................................................................................	24	1	24.00	24	0	1	19	4
...................................................................CTTGGCACTGGGAGAATTCACT.................................................................................................................................	22	1	23.00	23	0	7	1	15
...................................................................CTTGGCACTGGGAGAATTCG...................................................................................................................................	20	1	19.00	19	0	9	0	10
...................................................................CTTGGCACTGGGAGAATTCC...................................................................................................................................	20	1	15.00	15	0	3	2	10
...................................................................CTTGGCACTGGGAGAATTCACC.................................................................................................................................	22	1	12.00	12	0	3	6	3
...................................................................CTTGGCACTGGGAGAATTCAT..................................................................................................................................	21	1	11.00	11	0	3	0	8
...................................................................CTTGGCACTGGGAGAATTCACAGTT..............................................................................................................................	25	1	10.00	10	0	0	7	3
...................................................................CTTGGCACTGGGAGAATTCACAT................................................................................................................................	23	1	10.00	10	0	2	2	6
...............................................................................................................GTGGTTCTGCGGGTGCC-A........................................................................................	18	1	8.00	8	0	0	0	8
...................................................................CTTGGCACTGGGAGAATTG....................................................................................................................................	19	1	7.00	7	0	7	0	0
...................................................................CTTGGCACTGGGAGAATTCACAC................................................................................................................................	23	1	6.00	6	0	0	2	4
...................................................................CTTGGCACTGGGAGAATTCACAGTA..............................................................................................................................	25	1	5.00	5	0	0	3	2
...................................................................CTTGGCACTGGGAGAATTTT...................................................................................................................................	20	5	4.20	21	0	13	0	8
...............................................................................................................GTGGTTCTGCGGGTGCC-AAAAC....................................................................................	22	1	4.00	4	3	0	0	1
...................................................................CTTGGCACTGGGAGAATTCAG..................................................................................................................................	21	1	4.00	4	0	1	2	1
..................................................................TCTTGGCACTGGGAGAATTCA...................................................................................................................................	21	1	4.00	4	0	0	0	4
.......................................................................GCACTGGGAGAATTCACA.................................................................................................................................	18	1	4.00	4	0	0	3	1
..............................................................................................................TGTGGTTCTGCGGGTGCC-A........................................................................................	19	1	3.00	3	0	0	1	2
...................................................................CTTGGCACTGGGAGAATTCACAGAA..............................................................................................................................	25	1	3.00	3	0	0	3	0
...................................................................CTTGGCACTGGGAGAATTCATT.................................................................................................................................	22	1	3.00	3	0	1	0	2
........................................................................CACTGGGAGAATTCACAG................................................................................................................................	18	1	3.00	3	1	0	1	1
....................................................................TTGGCACTGGGAGAATTCACAGT...............................................................................................................................	23	1	3.00	3	0	0	3	0
...............................................................................................................GTGGTTCTGCGGGTGCC-AAAA.....................................................................................	21	1	2.00	2	0	0	1	1
.......................................................................GCACTGGGAGAATTCACAG................................................................................................................................	19	1	2.00	2	0	0	0	2

droYak3

T-----------------------------------------------------GCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGACTTTAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAATTTAATCAACG-GCTCTATACAAC-------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................................................CTTGGCACTGGGAGAATTCA...................................................................................................................................	20	2	1596.50	3193	2	87	1	9	446	1255	1392	1	0	0	0
...................................................................CTTGGCACTGGGAGAATTCACAG................................................................................................................................	23	2	1357.50	2715	20	27	563	1305	60	139	600	0	0	1	0
...................................................................CTTGGCACTGGGAGAATTCAC..................................................................................................................................	21	2	862.50	1725	21	92	19	50	201	610	730	0	1	1	0
...................................................................CTTGGCACTGGGAGAATTCACA.................................................................................................................................	22	2	613.00	1226	13	35	49	225	74	217	613	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTC....................................................................................................................................	19	2	397.00	794	27	13	0	1	155	402	196	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCACAGT...............................................................................................................................	24	2	21.50	43	0	1	27	13	1	0	1	0	0	0	0
...................................................................CTTGGCACTGGGAGAATT.....................................................................................................................................	18	2	20.50	41	1	1	0	0	13	23	2	0	0	1	0
...............................................................................................................GTGGTTCTGCGGGTGCC-AAAAT....................................................................................	22	2	17.50	35	0	1	27	7	0	0	0	0	0	0	0
....................................................................TTGGCACTGGGAGAATTCACAG................................................................................................................................	22	2	14.00	28	0	6	4	7	2	0	9	0	0	0	0
....................................................................TTGGCACTGGGAGAATTCA...................................................................................................................................	19	2	11.50	23	0	11	0	0	1	4	7	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCT...................................................................................................................................	20	2	11.50	23	0	1	0	0	4	13	5	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCAA..................................................................................................................................	21	2	11.00	22	0	1	0	0	2	14	5	0	0	0	0
....................................................................TTGGCACTGGGAGAATTCAC..................................................................................................................................	20	2	9.00	18	0	12	0	1	0	3	2	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCACAC................................................................................................................................	23	2	8.00	16	1	0	14	0	0	1	0	0	0	0	0
....................................................................TTGGCACTGGGAGAATTCACA.................................................................................................................................	21	2	7.50	15	1	1	0	2	2	2	7	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTT....................................................................................................................................	19	2	7.50	15	0	1	0	0	2	9	3	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCC...................................................................................................................................	20	2	7.50	15	0	0	0	0	2	13	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCACAGA...............................................................................................................................	24	2	6.00	12	0	0	4	6	1	0	1	0	0	0	0
...............................................................................................................GTGGTTCTGCGGGTGCC-AAAA.....................................................................................	21	2	4.50	9	0	0	4	5	0	0	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCACAGC...............................................................................................................................	24	2	3.50	7	0	0	6	1	0	0	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCG...................................................................................................................................	20	2	3.00	6	0	0	0	0	1	4	1	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCACC.................................................................................................................................	22	2	2.50	5	0	0	0	2	1	1	1	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCAT..................................................................................................................................	21	2	2.50	5	0	0	0	0	1	4	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTA....................................................................................................................................	19	2	2.50	5	1	0	0	0	0	4	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCACT.................................................................................................................................	22	2	2.50	5	0	0	0	0	1	0	4	0	0	0	0
........................................................................CACTGGGAGAATTCACAG................................................................................................................................	18	2	2.00	4	2	0	1	1	0	0	0	0	0	0	0
....................................................................TTGGCACTGGGAGAATTCACAGT...............................................................................................................................	23	2	2.00	4	0	0	2	2	0	0	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCACG.................................................................................................................................	22	2	1.50	3	1	0	0	1	0	1	0	0	0	0	0
.....................................................................TGGCACTGGGAGAATTCACAG................................................................................................................................	21	2	1.50	3	0	1	2	0	0	0	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCACAGTT..............................................................................................................................	25	2	1.50	3	0	0	1	2	0	0	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCACAT................................................................................................................................	23	2	1.50	3	0	0	1	1	0	0	1	0	0	0	0
...................................................................CTTGGCACTGGGAGAAT......................................................................................................................................	17	2	1.00	2	0	0	0	0	0	2	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCACAGTA..............................................................................................................................	25	2	1.00	2	0	0	1	1	0	0	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCACAA................................................................................................................................	23	2	1.00	2	0	0	0	0	1	0	1	0	0	0	0
...............................................................................................................GTGGTTCTGCGGGTGCC-AAAATT...................................................................................	23	2	1.00	2	0	0	1	1	0	0	0	0	0	0	0
...............................................................................................................GTGGTTCTGCGGGTGCC-A........................................................................................	18	2	1.00	2	0	2	0	0	0	0	0	0	0	0	0
....................................................................TTGGCACTGGGAGAATTCACAGC...............................................................................................................................	23	2	1.00	2	0	0	2	0	0	0	0	0	0	0	0
...............................................................................................................GTGGTTCTGCGGGTGCC-AAA......................................................................................	20	2	1.00	2	0	1	0	1	0	0	0	0	0	0	0
...............................................................................................................GTGGTTCTGCGGGTGCC-AAAAC....................................................................................	22	2	1.00	2	0	0	2	0	0	0	0	0	0	0	0
.................................................................................................................GGTTCTGCGGGTGCC-AAAAT....................................................................................	20	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................CTTGGCACTGGGAGAATTCACAAAA..............................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

A-------------------------------------------------T--AGCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGATTTTAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAATTTAATCAACA-GCTCCATACAACGA-----TA----------------AAAAATT-----------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...................................................................CTTGGCACTGGGAGAATTCACAG................................................................................................................................	23	1	21507.00	21507	37	132	845	2065	2065	16363	0
...................................................................CTTGGCACTGGGAGAATTCAC..................................................................................................................................	21	1	19123.00	19123	22	4	835	185	2319	15758	0
...................................................................CTTGGCACTGGGAGAATTCA...................................................................................................................................	20	1	15856.00	15856	26	0	687	47	5095	10001	0
...................................................................CTTGGCACTGGGAGAATTCACA.................................................................................................................................	22	1	15054.00	15054	31	20	807	508	2250	11438	0
...................................................................CTTGGCACTGGGAGAATTC....................................................................................................................................	19	1	6373.00	6373	2	0	135	6	1651	4579	0
...................................................................CTTGGCACTGGGAGAATT.....................................................................................................................................	18	1	298.00	298	2	1	13	0	96	186	0
...................................................................CTTGGCACTGGGAGAATTCACAT................................................................................................................................	23	1	261.00	261	0	0	5	21	3	232	0
...................................................................CTTGGCACTGGGAGAATTCACAA................................................................................................................................	23	1	175.00	175	0	0	8	6	2	159	0
...................................................................CTTGGCACTGGGAGAATTCACAC................................................................................................................................	23	1	167.00	167	0	3	1	8	2	153	0
....................................................................TTGGCACTGGGAGAATTCACAG................................................................................................................................	22	1	124.00	124	4	1	8	14	13	84	0
...................................................................CTTGGCACTGGGAGAATTCAA..................................................................................................................................	21	1	110.00	110	0	0	6	0	12	92	0
....................................................................TTGGCACTGGGAGAATTCAC..................................................................................................................................	20	1	108.00	108	2	0	7	2	16	81	0
....................................................................TTGGCACTGGGAGAATTCA...................................................................................................................................	19	1	85.00	85	0	0	7	0	25	53	0
...................................................................CTTGGCACTGGGAGAATTT....................................................................................................................................	19	1	75.00	75	1	0	3	0	27	44	0
...................................................................CTTGGCACTGGGAGAATTCACAGA...............................................................................................................................	24	1	69.00	69	1	0	4	3	5	56	0
....................................................................TTGGCACTGGGAGAATTCACA.................................................................................................................................	21	1	64.00	64	2	0	6	2	8	46	0
...................................................................CTTGGCACTGGGAGAATTCT...................................................................................................................................	20	1	50.00	50	0	0	1	0	14	35	0
...................................................................CTTGGCACTGGGAGAATTA....................................................................................................................................	19	1	42.00	42	0	0	2	0	5	35	0
...................................................................CTTGGCACTGGGAGAATTCACAGT...............................................................................................................................	24	1	40.00	40	0	0	3	7	3	27	0
...................................................................CTTGGCACTGGGAGAATTCACT.................................................................................................................................	22	1	37.00	37	0	0	2	1	4	30	0
....................................................................TTGGCACTGGGAGAATTC....................................................................................................................................	18	1	25.00	25	0	0	1	0	6	18	0
...................................................................CTTGGCACTGGGAGAATTCAT..................................................................................................................................	21	1	22.00	22	0	0	1	0	3	18	0
...................................................................CTTGGCACTGGGAGAATTCACG.................................................................................................................................	22	1	21.00	21	0	0	0	1	3	17	0
...................................................................CTTGGCACTGGGAGAATTCACC.................................................................................................................................	22	1	20.00	20	0	1	7	4	0	8	0
...................................................................CTTGGCACTGGGAGAATTCC...................................................................................................................................	20	1	16.00	16	0	0	4	0	2	10	0
...............................................................................................................GTGGTTCTGCGGGTGCC-AAAAT....................................................................................	22	1	15.00	15	3	3	0	4	0	5	0
...................................................................CTTGGCACTGGGAGAATTCG...................................................................................................................................	20	2	8.50	17	0	0	1	0	4	12	0
...................................................................CTTGGCACTGGGAGAATTCACAGC...............................................................................................................................	24	1	6.00	6	0	0	0	2	1	3	0
...................................................................CTTGGCACTGGGAGAATTCACAGTT..............................................................................................................................	25	1	6.00	6	0	1	0	0	1	4	0
.....................................................................TGGCACTGGGAGAATTCACAG................................................................................................................................	21	1	6.00	6	0	0	0	1	0	5	0
...................................................................CTTGGCACTGGGAGAATTCACAGG...............................................................................................................................	24	1	5.00	5	0	0	0	0	2	3	0
...............................................................................................................GTGGTTCTGCGGGTGCC-AAAA.....................................................................................	21	1	5.00	5	0	0	0	2	0	3	0
...................................................................CTTGGCACTGGGAGAATTCACCT................................................................................................................................	23	1	5.00	5	0	0	0	5	0	0	0
......................................................................GGCACTGGGAGAATTCACAG................................................................................................................................	20	1	4.00	4	0	0	1	0	0	3	0
...................................................................CTTGGCACTGGGAGAATTCACAGTA..............................................................................................................................	25	1	4.00	4	0	0	1	1	1	1	0
...................................................................CTTGGCACTGGGAGAATTCAG..................................................................................................................................	21	1	4.00	4	0	0	2	1	0	1	0

dpe-mir-263b

scaffold_9:1894047-1894138 -

Known

Unknown

3pUTR

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-35.7	-35.7	-35.7