dmo_986

intron [Dmoj\GI20094-in]; CDS [Dmoj\GI20094-cds]; exon [dmoj_GLEANR_4978:9]; intron [Dmoj\GI20094-in]; CDS [Dmoj\GI20094-cds]; exon [dmoj_GLEANR_4978:10]

Name	Class	Family	Strand
Gypsy8-I_Dpse-int	LTR	Gypsy	+
TART_DV	LINE	Jockey	+

------############################################---------------------------------------------################################################## ACGCAGGTGCGCCCAATGGCGAGCAGGATGTGCGCCTACAAGCGGTTGCCGTGCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAGCAACAGCAGCAGCAACAACAACAACAGCAACATCAACAACAGCAACAGTTGAGCGACTA ************************************************.((.....((.((.((....)).))..........)).....)).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V110 male body	M060 embryo	V041 embryo	V049 head
...................................CTACAAGCGGTTGCCGTGCAGCA.......................................................................................	23	0	1	1.00	1	0	1	0	0	0
...................................CTACAAGCGGTTGCCGTGC...........................................................................................	19	0	1	1.00	1	1	0	0	0	0
.CGCAGGTACGCCCAATGGCAC...........................................................................................................................	21	3	2	0.50	1	0	0	1	0	0
.CGCAGGTACGACCAATGGC.............................................................................................................................	19	2	3	0.33	1	0	0	1	0	0
.................................................CGTGCAGCAGCAGCAGCAGCAGC.........................................................................	23	0	7	0.14	1	1	0	0	0	0
...................................................................GCAGCAGCAACAACAGCAGC..........................................................	20	0	20	0.10	2	2	0	0	0	0
................................................................................CAGCAGCAACAGCAGCAGC..............................................	19	0	20	0.10	2	2	0	0	0	0
.................................................................................................GCAACAACAACAACAGCAACAT..........................	22	0	17	0.06	1	0	0	1	0	0
......................................................................GCAGCAACAACAGTAGCAACAG.....................................................	22	1	20	0.05	1	0	1	0	0	0
..................................................................AGCAGCAGCAACAACAGCA............................................................	19	0	20	0.05	1	0	0	0	0	1
................................................................................CAGCAGCAACAGCAGCAGCAAC...........................................	22	0	20	0.05	1	0	1	0	0	0
...............................................................................ACAGCAGCAACAGCAGCAGCAAC...........................................	23	0	20	0.05	1	1	0	0	0	0
..............................................................................................................TAGCAACATCAACAACAGCAAC.............	22	1	20	0.05	1	1	0	0	0	0
......................................................................................CAACAGCAGCAGCAACAACAACAACAGCA..............................	29	0	20	0.05	1	0	0	1	0	0
..................................................GTGCAGCAGCAGCAGCAGCAGCAGC......................................................................	25	0	20	0.05	1	1	0	0	0	0
..........................................................GCAGCAGCAGCAGCAGCAACA..................................................................	21	0	20	0.05	1	0	0	0	1	0
.............................................................................................AGCAGCAACAACAACAACAGCAAC............................	24	0	20	0.05	1	0	0	1	0	0
...............................................................AGCAGCAGCAGCAACAACAGCA............................................................	22	0	20	0.05	1	0	0	0	1	0
...........................................................................AACAACAGCAGCAACAGCAGCAGC..............................................	24	0	20	0.05	1	1	0	0	0	0
........................................................................................ACAGCAGCAGCAACAACA.......................................	18	0	20	0.05	1	0	0	0	1	0

TGCGTCCACGCGGGTTACCGCTCGTCCTACACGCGGATGTTCGCCAACGGCACGTCGTCGTCGTCGTCGTCGTCGTTGTTGTCGTCGTTGTCGTCGTCGTTGTTGTTGTTGTCGTTGTAGTTGTTGTCGTTGTCAACTCGCTGAT ************************************************.((.....((.((.((....)).))..........)).....)).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	M060 embryo
..............TGCCCGCTCGTCCTACAC.................................................................................................................	18	2	10	0.10	1	1	0
..........................................................................................................TGTTGTCGTTGTAGTTGTTG...................	20	0	12	0.08	1	0	1
...............GCCCGCTCGTCCTACACG................................................................................................................	18	2	13	0.08	1	1	0

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6496:5660375-5660519 +	dmo_986	ACGCAGGTGCGCCCAATG-GCG--AGCAG----GAT-----------GTGCGCCTACAAGCGGTTGCCGTGCAGCAGC---------------AGCAG----------------------------------------------CAGC-------------A------GCAGCAACAACAGCAGCAACA---------------GCA------GCAGCA-------ACAACAACAACAGCAACA-------TC---AACAACA---------G---CAAC------------AGTTG------------AGCGACTA
droVir3	scaffold_12875:20476032-20476197 -		ACGCAGGTGCGCCCAGCA-GCG--AGCAG----GAT-----------GTGCGCTTAGCAGCAGTTGCTGTGCAGCAGC---------------AGCAG----------------------------CAGCAACAGCAACAACAAC----------------------------AACAAC---AACAGCA---GCAACAACA---------------ACAG----CAGCAGCAGCAACAACAGCA----GCAACATCAGCAACA---------A------------CAGCAACAATTA------------AGCGACTA
droGri2	scaffold_14906:8098548-8098687 +		GC--AGCGGCGTCCAATG-CCA--TGGAA----GTC-----------ATGCATCAG---------------------C---------------AACAG----------------------------CAGCAACAACAACAGCAGCAAC-------------AGCAGCAGCAGCAGCAGC------AACAGCAGCAGC---AGCAGCA------ACAA-------------------CAACAACA-------GC---AACAACA---------G---CAAC------------AGCAG------------CCGCACCA
droWil2	scf2_1100000004514:905794-905935 +		ATACAGGTACGCCTACCA-GTG--AACAG----GAT-----------GTGCGTCTG----CAA--------CAACAAC------AACAGCAGCAGCA----------------------------------------------GCAGC-------------A------AC---AACAAC------AACAACAGCAGC------AGCA------GCAACA-------TCAACAACAGCAGCAACA-------TC---AACAGCA---------A---CAAC------------AATTA------------AACGACTA
dp5	3:10969720-10969858 +		ACGCAGGTGCGCCCAGCA-GCG--AGCAG----GAT-----------GTGCGTCTGGCCGCCGTCGCAGTGCAG---------------CAGCAGCAG----------------------------------------------CAGC-------------A------CCAACAGC---------AACAGCAACAGCAACAACAGCA------CCAGCA-------ACAC---------CAGC----------------AACA---------A------------CAGCAGCAGCTG------------GGGGACTA
droPer2	scaffold_4:6291382-6291514 +		ACGCAGGTGCGCCCAGCA-GCG--AGCAG----GAT-----------GTGCGTCTGGCCGCCGTCGCAGTGCAG---------------CAGCAGCAG----------------------------------------------CAGC-------------A------CCAACAGCAAC------AGCAACAACA---------GCA------CCAGCA-------ACAC---------CAGC----------------AACA---------A------------CAGCAGCAGCTG------------GGGGACTA
droAna3	scaffold_13337:21935665-21935799 -		ACTCACACGGGCCTAACAAGTG--AGCAG----CGA-----------ATGCTCTTG----CAG--------CAACAAC------AGCAGCAGCAACA----------------------------------------------GCAGC-------------A------AC---AACAGC------AACAGCAGCAGCA------ACA------GCAG-------CAGCAG---------CAGC-AACAG---------CAGCA---------G---CAACAGC-----------TGC------------AGCAACAA
droBip1	scf7180000396431:1091928-1092074 -		ATACAGTTGCGGC-AGCA-GCG---GCCG----CAG------CAG-----CA----GCTGCCGTTGCA-AGCAACAC------------------------------------------GTTGCAGCA---A------------CATC---ATCAGC-ACCA---CCAGCAGCAACAGC---------------AACAACA---ACA------GCAGCA-------GCAA---------CAAC-AACAA---------CAGCA---ACATTCA---CCGCAGCA------GCATTTA-------------------A
droKik1	scf7180000302634:393568-393703 +		GG-----GGCCTCCAGCA-GCG---------------------------------------------------GCAGC---------AGCAGCACGGCCAGCAGCAGTGCCTCGCACTTGTTGCAGCA---------------GCAGC-------------AGCAACAGCAACAGCAGC---------A---GCAACA------CCA------GCAGCA-------GCAACAGCAACAGCAGCA-------GC---AACAACA---------------------------GCAACTG-------------------T
droFic1	scf7180000453850:255136-255271 -		GC--AGCAGCGCCGCACG-GCG--GGGAG----CTC-----------GGGCGGCCACCAG----------CCAACAGC------AGCAGCAGCAGCA----------------------------------------------GC-------------------------AGCAACAACAGC---AACAGCAGCAGCA------GCAGCGCTACCAACAG----CAGCAGCAGC-------------------------AACT---------G---CGGC------------AGCAG------------CACCAGCA
droEle1	scf7180000491107:1289395-1289530 +		ATGCAGGTGCGCCGAGCA-GCG--ATCAG----GAT-----------GTGCGTCTGGCCGCCGTTGCCGCGCAG---------------CAGCAGCAG----------------------------------------------CAGC-------------A------GC---AGCATC------AACAACAGCAGC------AGCA------GCAACA-------CCAG---------CAGCA-------AC---AGCAGCA---------G---CAGC------------AGCTC------------GGCGACTA
droRho1	scf7180000761121:286082-286206 -		GCG--------ACGAA-T-GCC--AGCAA----GAT-----------CTACGA--G----CCCA-----TACATGAGCTGATCCAG---CAGCAGCA----------------------------------------------GCAAC----------TCCA---GCAGCAGCAACTGC---------A---GCAAC------AGCA------ACAGCA-------GCAACAGCAACTGCAGCA-------GC---AGCAGCG--------------------------------------------------GC-T
droBia1	scf7180000302126:49877-50010 -		AGCCAAGTGCGCC-GGCG-ACG---------------------------------------------------ACGAC------GACAGCAGCAGCA----------------------------------------------GCAGC-------------A------GC---AACAGC------AACAGCAGCAGC------AGCA------GCAACA-------GCAACAGCAACAGCAACA-------GC---TGCAACAGCAACACTAA---AACCAGCG------ATGTTGC------------AGCCACTA
droTak1	scf7180000415417:319653-319793 -		AAGCGA----GCCCAACA-ACA--GGCTG----GAACCTCGAGTG--CTGCGG-------CCG---CCTCGCAACAGC---------------AGCAA----------------------------------------------CAGC---AA----C---A------GCAACAACAGC---AGCAGCA---GCAACT---GTTGCA------CCAGCA-------AATC---------CAAC-AGCAG---------ACGCA---------A---CAGCAGT-----------CGC------------AGCTGCCA
droEug1	scf7180000409759:640981-641104 +		ACG--------GCCAGCA-GCA-------------G------------TGCCTC----------------CCACTTGC-------------------------------------------TGCAGCAGCAACA---------GCAGC-------------A------GCAGCAACAAC------AACAGCAGCAGC---------A------CCAGCAG----CAGCAGCAGCAACAGCAGCA----------------------------------------------GCAACTAACTGCCCATCCGAGCGACT-
dm3	chr3R:26186467-26186598 +		CCGCAT----GCCCAGCA-GCATCAGCAG----CAG-----------GTGCGGCAG----CAG--------CAACAGC------AGCAGCAGCAGCA----------------------------------------------GC----------------A------ACCACAGCAGC------AACAACAACAGC---A---GCA------GCAA-------CAGACA---------CAAC-AACAA---------CAGTC---------A---CAACAACAACAGCAGCA-----------------------G
droSim2	3l:9590190-9590321 -		GCGTGAGTTCCTC-ACCG-ACG---ACGACCAGGAA-------GATAAGTCGGAT---AAC-------AAGCGACAGC---------------A-------------------------------------------------GCAACAGCAG----C---A------GCAACAACAGC---AGCAACA---GCAGC---------A------GCAACAG----CAGCAG------CAACAAC----------------AGCA---------GCAACAGC------------AAATG------------------AA
droSec2	scaffold_15:75451-75589 +		AAACATGGGCACTGGGGA-AAA--GGTGG----CAA-----------AAACTGTTG----CCGA-----CGCAACAGC---------AGCAGCATAAG----------------------------------------------CAGC-------------A------AC---AATGG-AGCAGCAGCA---GCAACCGCA---GCA------AGGA-------CAACAG---------CAAC-ATCAG---------CAGCA---------G---CATCAGA-----------TGC------------AGCAGCAC
droYak3	2L:9747001-9747138 -		GT------TCGCCCAGCA-GCA---GCAG----C-T-------CT--TTGCGGC----------------CCAGCAGCTGCAGCTGCAGCACCAGCA----------------------------------------------ACTGC-------------A------GC---AAC---------AGCA---GCAGCACCAGCAGCA------CCAGCA-------GCAACAACAGCAGCAGCA-------AC---AGCAGCA---------G---CAGC------------AGTAC------------AGCTACTA
droEre2	scaffold_4845:11252346-11252484 -		GC--AGACGCGCC-TGCA-GCG----CAA----AAA---------GCAGGCCAAC---ACCCA-------TCACCAGC------A----------------------------------------------------------GCAAC-------------AGCAGCAGCAGCAGCACCAACAACATCAGCAGCA---------GCA------ACAACAGTCAACAGT-G---CAACAACAGC----------------AGCA---------G---CAGCA---------GCAACTC--------------CATGTG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

ACGCAGGTGCGCCCAATG-GCG--AGCAG----GAT-----------GTGCGCCTACAAGCGGTTGCCGTGCAGCAGC---------------AGCAG----------------------------------------------CAGC-------------A------GCAGCAACAACAGCAGCAACA---------------GCA------GCAGCA-------ACAACAACAACAGCAACA-------TC---AACAACA---------G---CAAC------------AGTTG------------AGCGACTA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.....................................................CTACAAGCGGTTGCCGTGCAGCA.................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.....................................................CTACAAGCGGTTGCCGTGC.....................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...................................................................CGTGCAGCAGC---------------AGCAG----------------------------------------------CAGC-------------A------GC...................................................................................................................................................	23	7	0.14	1	1	0	0	0	0	0
..................................................................................................................................................GC-------------A------GCAGCAACAACAGCAGC....................................................................................................................................	20	20	0.10	2	2	0	0	0	0	0
..................................................................................................................................................................................CAGCAGCAACA---------------GCA------GCAGC...................................................................................................	19	20	0.10	2	2	0	0	0	0	0
........................................................................................................................................................................................................................GCA-------ACAACAACAACAGCAACA-------T.................................................................	22	17	0.06	1	0	0	0	0	1	0
.................................................................................................................................................AGC-------------A------GCAGCAACAACAGCA......................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0
..................................................................................................................................................................................CAGCAGCAACA---------------GCA------GCAGCA-------AC.........................................................................................	22	20	0.05	1	0	0	0	0	0	1
.................................................................................................................................................................................ACAGCAGCAACA---------------GCA------GCAGCA-------AC.........................................................................................	23	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................................................................CAACA---------------GCA------GCAGCA-------ACAACAACAACAGCA............................................................................	29	20	0.05	1	0	0	0	0	1	0
....................................................................GTGCAGCAGC---------------AGCAG----------------------------------------------CAGC-------------A------GCAGC................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
............................................................................GC---------------AGCAG----------------------------------------------CAGC-------------A------GCAGCAACA............................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
..............................................................................................................................................................................................................A------GCAGCA-------ACAACAACAACAGCAAC..........................................................................	24	20	0.05	1	0	0	0	0	1	0
................................................................................................AG----------------------------------------------CAGC-------------A------GCAGCAACAACAGCA......................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
.............................................................................................................................................................................AACAACAGCAGCAACA---------------GCA------GCAGC...................................................................................................	24	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................................................................ACA---------------GCA------GCAGCA-------ACAACA.....................................................................................	18	20	0.05	1	0	1	0	0	0	0

droVir3

ACGCAGGTGCGCCCAGCA-GCG--AGCAG----GAT-----------GTGCGCTTAGCAGCAGTTGCTGTGCAGCAGC---------------AGCAG----------------------------CAGCAACAGCAACAACAAC----------------------------AACAAC---AACAGCA---GCAACAACA---------------ACAG----CAGCAGCAGCAACAACAGCA----GCAACATCAGCAACA---------A------------CAGCAACAATTA------------AGCGACTA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................................................TAGCAGCAGTTGCTGTGCAGCAGC---------------A...............................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............GCA-GCG--AGCAG----GAT-----------GTGCGC........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CGCAGGTGCGCCCAGCA-GCG--AGCAG----GA..........................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............CAGCA-GCG--AGCAG----GAT-----------GTGC..........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...CAGGTGCGCCCAGCA-GCG--A....................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........GCGCCCAGCA-GCG--AGCAG----GAT-----------GTG...........................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................ACAGCA----GCAACATCAGCAACA---------A------------CAGC............................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................GCA----GCAACATCAGCAACA---------A------------CAGCAACA........................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................AACAATTA------------AGCGACT.	15	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................CAAC----------------------------AACAAC---AACAGCA---GCA..........................................................................................................................	20	20	0.20	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................GCA---GCAACAACA---------------ACAG----CAGCAGC......................................................................................	23	20	0.20	4	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................GCAGCAACAACAGCA----GCAACATC.............................................................	23	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................AGCAACAACAGCA----GCAACATC.............................................................	21	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................CAGCA----GCAACATCAGCAACA---------A------------................................	21	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................GCA---GCAACAACA---------------ACAG----CAGCA........................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................AGCAACA---------A------------CAGCAACAATT.....................	19	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................AACAGCA---GCAACAACA---------------ACAG----CA...........................................................................................	22	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................GCAACAACA---------------ACAG----CAGCAGC......................................................................................	20	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................ACAG----CAGCAGCAGCAACAACAGCA----.....................................................................	24	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................AAC---AACAGCA---GCAACAACA---------------AC...................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
...................................................................................................................................................................................................................................................A----GCAACATCAGCAACA---------A------------CAGC............................	21	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................ACAGCA----GCAACATCAGCAACA---------.............................................	21	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................C---AACAGCA---GCAACAACA---------------A....................................................................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................AC----------------------------AACAAC---AACAGCA---GCAACAACA---------------ACAG----C............................................................................................	29	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................AACAGCAACAACAAC----------------------------AACAAC---A......................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................CA---------------ACAG----CAGCAGCAGCAACAACAGCA----GC...................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................AACAACA---------------ACAG----CAGCAGCAGCAACAAC.............................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................CAGCA---GCAACAACA---------------ACAG----CAGC.........................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................AGCA---GCAACAACA---------------ACAG----C............................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................CA---------------ACAG----CAGCAGCAGCAACAACA............................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................A---------------ACAG----CAGCAGCAGCAACAACAGC..........................................................................	24	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................GCA---GCAACAACA---------------ACAG----CAGCAGCAGCA..................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................AACAAC----------------------------AACAAC---AACAGCA---.............................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................AGCA---GCAACAACA---------------ACAG----CAGCAGC......................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................CAGCAGC---------------AGCAG----------------------------CAGCAACA.......................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................G----CAGCAGCAGCAACAACAGCA----.....................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................AACAAC---AACAGCA---GCAACAACA---------------AC...................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................AACAGCA---GCAACAACA---------------ACAG----CAGCAGC......................................................................................	27	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................CAGCAACAGCAACAACAAC----------------------------AACAAC---AA.....................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

GC--AGCGGCGTCCAATG-CCA--TGGAA----GTC-----------ATGCATCAG---------------------C---------------AACAG----------------------------CAGCAACAACAACAGCAGCAAC-------------AGCAGCAGCAGCAGCAGC------AACAGCAGCAGC---AGCAGCA------ACAA-------------------CAACAACA-------GC---AACAACA---------G---CAAC------------AGCAG------------CCGCACCA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..................................................................................................................................................AC-------------AGCAGCAGCAGCAGCAGC------AAC.................................................................................................................................	23	20	0.10	2	2	0
..........................................................................................................................................................................................ACAGCAGCAGC---AGCAGCA------AC......................................................................................................	20	20	0.05	1	1	0
.....................................................................................................................................AACAACAGCAGCAAC-------------AGCAGCA.....................................................................................................................................................	22	20	0.05	1	1	0
......................................................................................................................................ACAACAGCAGCAAC-------------AGCAGCAGCA..................................................................................................................................................	24	20	0.05	1	1	0
................................................................................................................................................................................................................................................AACA-------GC---AACAACA---------G---CAAC------------A........................	19	20	0.05	1	1	0

droWil2

ATACAGGTACGCCTACCA-GTG--AACAG----GAT-----------GTGCGTCTG----CAA--------CAACAAC------AACAGCAGCAGCA----------------------------------------------GCAGC-------------A------AC---AACAAC------AACAACAGCAGC------AGCA------GCAACA-------TCAACAACAGCAGCAACA-------TC---AACAGCA---------A---CAAC------------AATTA------------AACGACTA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................................................................................................................................................................................................................................................................AGCA---------A---CAAC------------AATTA------------AACGACT.	21	1	1.00	1	0	0	0	1	0
...........................AG----GAT-----------GTGCGTCTG----CAA--------C.....................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
....................TG--AACAG----GAT-----------GTGCGTCTG----CAA--------CAAC..................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
.................A-GTG--AACAG----GAT-----------GTGCGTCT......................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
....................................................TCTG----CAA--------CAACAAC------AACAGCA..................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0
.........................................................................ACAAC------AACAGCAGCAGCA----------------------------------------------GCA...........................................................................................................................................................................	21	20	0.40	8	0	0	0	8	0
..........................................................................CAAC------AACAGCAGCAGCA----------------------------------------------GC............................................................................................................................................................................	19	20	0.35	7	0	0	0	7	0
.......................................................................CAACAAC------AACAGCAGCAGCA----------------------------------------------GC............................................................................................................................................................................	22	20	0.25	5	0	0	0	5	0
..............................................................A--------CAACAAC------AACAGCAGCAGC.............................................................................................................................................................................................................................	20	20	0.15	3	0	0	0	2	1
........................................................................................................................................................................AC---AACAAC------AACAACAGCAGC------AGCA------........................................................................................................	24	20	0.15	3	0	0	0	3	0
........................................................................................................................................................................................................................................ACAGCAGCAACA-------TC---AACAGCA---------.............................................	21	9	0.11	1	0	0	0	1	0
.............................................................................................................................................................................AACAAC------AACAACAGCAGC------AGCA------GCA.....................................................................................................	25	20	0.10	2	0	0	0	2	0
...........................................................................................................................................................................................CAACAGCAGC------AGCA------GCAAC...................................................................................................	19	20	0.10	2	0	0	0	2	0
.................................................................................................................................................................................................CAGC------AGCA------GCAACA-------TCAACAACA..................................................................................	23	20	0.10	2	2	0	0	0	0
....................................................................................................................................................................................................................................AACAACAGCAGCAACA-------TC---AAC..........................................................	21	12	0.08	1	0	0	0	0	1
......................................................................................................................................................................................................................CAACA-------TCAACAACAGCAGCA............................................................................	20	20	0.05	1	0	0	0	1	0
..........................................................................CAAC------AACAGCAGCAGCA----------------------------------------------GCAGC-------------A------A....................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
..............................................................A--------CAACAAC------AACAGCAGCAGCA----------------------------------------------GCA...........................................................................................................................................................................	24	20	0.05	1	0	0	0	0	1
................................................................................................................................................................................................GCAGC------AGCA------GCAACA-------TCAACA.....................................................................................	21	20	0.05	1	0	0	0	1	0
................................................................................................................................................................................AAC------AACAACAGCAGC------AGCA------GCAA....................................................................................................	23	20	0.05	1	0	1	0	0	0
...........................................................................AAC------AACAGCAGCAGCA----------------------------------------------GCAGC-------------A------AC---................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
.................................................................................................................................................................A------AC---AACAAC------AACAACAGCAGC------AGC...............................................................................................................	24	20	0.05	1	0	0	0	1	0
...................................................................................................................................................................................................................................CAACAACAGCAGCAACA-------TC---A............................................................	20	20	0.05	1	0	0	0	0	1
............................................................................................................................................................................................AACAGCAGC------AGCA------GCAAC...................................................................................................	18	20	0.05	1	0	0	0	1	0
.............................................................................C------AACAGCAGCAGCA----------------------------------------------GCAGC-------------A------A....................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
.................................................................................................................................................AGC-------------A------AC---AACAAC------AACAACAGCAGC------AGCA------........................................................................................................	28	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................................AACAACAGCAGC------AGCA------GCA.....................................................................................................	19	20	0.05	1	0	0	0	0	1
.......................................................................CAACAAC------AACAGCAGCAGCA----------------------------------------------GCAGC-------------............................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
..................................................................................................................................................GC-------------A------AC---AACAAC------AACAACAGCAGC------..................................................................................................................	23	20	0.05	1	0	0	0	1	0
.............................................................AA--------CAACAAC------AACAGCAGCAGCA----------------------------------------------..............................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0
...........................................................................................................................................................................................................................................GCAGCAACA-------TC---AACAGCA---------.............................................	18	20	0.05	1	0	0	0	1	0
...........................................................................AAC------AACAGCAGCAGCA----------------------------------------------GCAGC-------------A------.....................................................................................................................................................	22	20	0.05	1	0	0	0	0	1
................................................................................................................................................................................AAC------AACAACAGCAGC------AGCA------GCA.....................................................................................................	22	20	0.05	1	0	0	1	0	0
.................................................................................................................................................................................AC------AACAACAGCAGC------AGCA------GCAA....................................................................................................	22	20	0.05	1	0	0	0	1	0

dp5

ACGCAGGTGCGCCCAGCA-GCG--AGCAG----GAT-----------GTGCGTCTGGCCGCCGTCGCAGTGCAG---------------CAGCAGCAG----------------------------------------------CAGC-------------A------CCAACAGC---------AACAGCAACAGCAACAACAGCA------CCAGCA-------ACAC---------CAGC----------------AACA---------A------------CAGCAGCAGCTG------------GGGGACTA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.......TGCGCCCAGCA-GCG--AGCAG----GAT-----------G.............................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
......................................................TGGCCGCCGTCGCAGTGCA....................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......TGCGCCCAGCA-GCG--AGCAG----GA..........................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.............CAGCA-GCG--AGCAG----GAT-----------GTG...........................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.....................G--AGCAG----GAT-----------GTGCGTCTGGC...................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...........................................................................................GCAGCAG----------------------------------------------CAGC-------------A------CCAACAGC---------A...................................................................................................................................	21	14	0.07	1	0	1	0	0	0	0	0	0	0	0
.......................................................................CAG---------------CAGCAGCAG----------------------------------------------CAGC-------------A------CCA..................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................C---------AACAGCAACAGCAACAACAGC...............................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................CAGC----------------AACA---------A------------CAGCAGCAGC......................	19	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................AACAGCAACAGCAACAAC..................................................................................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0

droPer2

ACGCAGGTGCGCCCAGCA-GCG--AGCAG----GAT-----------GTGCGTCTGGCCGCCGTCGCAGTGCAG---------------CAGCAGCAG----------------------------------------------CAGC-------------A------CCAACAGCAAC------AGCAACAACA---------GCA------CCAGCA-------ACAC---------CAGC----------------AACA---------A------------CAGCAGCAGCTG------------GGGGACTA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..............................................................GTCGCAGTGCAG---------------CAGCAGC.............................................................................................................................................................................................................................	19	1	4.00	4	4	0	0	0	0	0
...............................................GTGCGTCTGGCCGCCGTCGCA.........................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................AGC----------------AACA---------A------------CAGCAGCAGC......................	18	20	0.05	1	0	1	0	0	0	0

droAna3

ACTCACACGGGCCTAACAAGTG--AGCAG----CGA-----------ATGCTCTTG----CAG--------CAACAAC------AGCAGCAGCAACA----------------------------------------------GCAGC-------------A------AC---AACAGC------AACAGCAGCAGCA------ACA------GCAG-------CAGCAG---------CAGC-AACAG---------CAGCA---------G---CAACAGC-----------TGC------------AGCAACAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.CTCACACGGGCCTAACAAGTG--AGCAG----CG..........................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
........GGGCCTAACAAGTG--AGCAG----C...........................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.........................................................................ACAAC------AGCAGCAGCAACA----------------------------------------------GC............................................................................................................................................................................	20	20	0.25	5	0	5	0	0	0	0
.................................................................................................................................................................A------AC---AACAGC------AACAGCAGCAGCA------ACA------........................................................................................................	25	8	0.13	1	0	0	0	0	0	1
........................................................................................................................................................................AC---AACAGC------AACAGCAGCAGCA------AC...............................................................................................................	23	10	0.10	1	0	1	0	0	0	0
....................................................................................................................................................................................................CA------ACA------GCAG-------CAGCAG---------CAGC-A........................................................................	20	20	0.10	2	0	0	0	0	0	2
...............................................................................................................................................................................CAGC------AACAGCAGCAGCA------ACA------GCAG-------CA...........................................................................................	26	13	0.08	1	0	1	0	0	0	0
.................................................................................................................................................AGC-------------A------AC---AACAGC------AACAGCAGCAGC........................................................................................................................	24	13	0.08	1	0	0	0	0	0	1
...............................................................................................................................................GCAGC-------------A------AC---AACAGC------AACAGCAGCA..........................................................................................................................	24	14	0.07	1	0	1	0	0	0	0
..................................................................................................................................................................................................AGCA------ACA------GCAG-------CAGCAG---------CAGC-AACAG---------C..........................................................	27	14	0.07	1	1	0	0	0	0	0
.........................................................................................................................................................................C---AACAGC------AACAGCAGCAGCA------.................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................AGCAG---------CAGC-AACAG---------CAGC.......................................................	18	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................A------AC---AACAGC------AACAGCAGCA..........................................................................................................................	19	20	0.05	1	0	0	1	0	0	0
.............................................................................................................................................................................................................CA------GCAG-------CAGCAG---------CAGC-AACAG---------CAGCA---------.............................................	26	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................................GCAGCA------ACA------GCAG-------CAGCAG---------CAGC-A........................................................................	24	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................................................AGCAGCA------ACA------GCAG-------CAGCAG---------CAGC-A........................................................................	25	20	0.05	1	0	0	0	0	0	1
......................................................................................................................................................................................................................CAG-------CAGCAG---------CAGC-AACAG---------CAGCA---------.............................................	23	20	0.05	1	0	0	0	0	0	1
...........................................................................................GCAACA----------------------------------------------GCAGC-------------A------AC---AACA............................................................................................................................................	18	20	0.05	1	0	0	0	0	0	1
.............................................................................................................................................................................AACAGC------AACAGCAGCAGCA------ACA------GC......................................................................................................	24	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................................................A------ACA------GCAG-------CAGCAG---------CAGC-AA.......................................................................	20	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................AGCAG---------CAGC-AACAG---------CAGCA---------G---CAAC.....................................	24	20	0.05	1	0	1	0	0	0	0
.........................................................................ACAAC------AGCAGCAGCAACA----------------------------------------------G.............................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1
..........................................................................................AGCAACA----------------------------------------------GCAGC-------------A------AC---AACAGC------....................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................G---------CAGC-AACAG---------CAGCA---------G---CAACAGC-----------.......................	23	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................C------AACAGCAGCAGCA------ACA------GCAG-------CAGC.........................................................................................	25	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................AGC-AACAG---------CAGCA---------G---CAACA....................................	19	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................AG---------CAGC-AACAG---------CAGCA---------G---CAA......................................	20	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................................C-------------A------AC---AACAGC------AACAGCAGCA..........................................................................................................................	20	20	0.05	1	0	1	0	0	0	0

droBip1

ATACAGTTGCGGC-AGCA-GCG---GCCG----CAG------CAG-----CA----GCTGCCGTTGCA-AGCAACAC------------------------------------------GTTGCAGCA---A------------CATC---ATCAGC-ACCA---CCAGCAGCAACAGC---------------AACAACA---ACA------GCAGCA-------GCAA---------CAAC-AACAA---------CAGCA---ACATTCA---CCGCAGCA------GCATTTA-------------------A	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GG-----GGCCTCCAGCA-GCG---------------------------------------------------GCAGC---------AGCAGCACGGCCAGCAGCAGTGCCTCGCACTTGTTGCAGCA---------------GCAGC-------------AGCAACAGCAACAGCAGC---------A---GCAACA------CCA------GCAGCA-------GCAACAGCAACAGCAGCA-------GC---AACAACA---------------------------GCAACTG-------------------T	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GC--AGCAGCGCCGCACG-GCG--GGGAG----CTC-----------GGGCGGCCACCAG----------CCAACAGC------AGCAGCAGCAGCA----------------------------------------------GC-------------------------AGCAACAACAGC---AACAGCAGCAGCA------GCAGCGCTACCAACAG----CAGCAGCAGC-------------------------AACT---------G---CGGC------------AGCAG------------CACCAGCA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ATGCAGGTGCGCCGAGCA-GCG--ATCAG----GAT-----------GTGCGTCTGGCCGCCGTTGCCGCGCAG---------------CAGCAGCAG----------------------------------------------CAGC-------------A------GC---AGCATC------AACAACAGCAGC------AGCA------GCAACA-------CCAG---------CAGCA-------AC---AGCAGCA---------G---CAGC------------AGCTC------------GGCGACTA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GCG--------ACGAA-T-GCC--AGCAA----GAT-----------CTACGA--G----CCCA-----TACATGAGCTGATCCAG---CAGCAGCA----------------------------------------------GCAAC----------TCCA---GCAGCAGCAACTGC---------A---GCAAC------AGCA------ACAGCA-------GCAACAGCAACTGCAGCA-------GC---AGCAGCG--------------------------------------------------GC-T	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGCCAAGTGCGCC-GGCG-ACG---------------------------------------------------ACGAC------GACAGCAGCAGCA----------------------------------------------GCAGC-------------A------GC---AACAGC------AACAGCAGCAGC------AGCA------GCAACA-------GCAACAGCAACAGCAACA-------GC---TGCAACAGCAACACTAA---AACCAGCG------ATGTTGC------------AGCCACTA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AAGCGA----GCCCAACA-ACA--GGCTG----GAACCTCGAGTG--CTGCGG-------CCG---CCTCGCAACAGC---------------AGCAA----------------------------------------------CAGC---AA----C---A------GCAACAACAGC---AGCAGCA---GCAACT---GTTGCA------CCAGCA-------AATC---------CAAC-AGCAG---------ACGCA---------A---CAGCAGT-----------CGC------------AGCTGCCA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ACG--------GCCAGCA-GCA-------------G------------TGCCTC----------------CCACTTGC-------------------------------------------TGCAGCAGCAACA---------GCAGC-------------A------GCAGCAACAAC------AACAGCAGCAGC---------A------CCAGCAG----CAGCAGCAGCAACAGCAGCA----------------------------------------------GCAACTAACTGCCCATCCGAGCGACT-	Size	Hit Count	Total Norm	Total
No Reads

dm3

CCGCAT----GCCCAGCA-GCATCAGCAG----CAG-----------GTGCGGCAG----CAG--------CAACAGC------AGCAGCAGCAGCA----------------------------------------------GC----------------A------ACCACAGCAGC------AACAACAACAGC---A---GCA------GCAA-------CAGACA---------CAAC-AACAA---------CAGTC---------A---CAACAACAACAGCAGCA-----------------------G	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........................................................................................................................................................................................................................................................A---------CAGTC---------A---CAACAACAACAGCA...........................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................A------ACCACAGCAGC------AACAACAACA..........................................................................................................................	22	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GCAG----CAG-----------GTGCGGCAG----CAG--------CAAC..................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................AACAGC---A---GCA------GCAA-------CAGACA---------CAT...........................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................................................................................................................................................GCAGC------AACAACAACAGC---A---GCA------........................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................AGC------AACAACAACAGC---A---GC...............................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................AACAGC------AGCAGCAGCAGC.............................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................G--------CAACAGC------AGCAGCAGCAGCA----------------------------------------------GC----------------............................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................CAACAACAGC---A---GCA------GCAA-------C............................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................G--------CAACAGC------AGCAGCAGCAGCA----------------------------------------------GC----------------A------AC...................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................CAACAACAGC---A---GCA------GCAA-------CA...........................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GCGTGAGTTCCTC-ACCG-ACG---ACGACCAGGAA-------GATAAGTCGGAT---AAC-------AAGCGACAGC---------------A-------------------------------------------------GCAACAGCAG----C---A------GCAACAACAGC---AGCAACA---GCAGC---------A------GCAACAG----CAGCAG------CAACAAC----------------AGCA---------GCAACAGC------------AAATG------------------AA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......................................................T---AAC-------AAGCGACAGC---------------A-------------------------------------------------GCAACAGCAG----C---............................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................A-------GATAAGTCGGAT---AAC-------AAGCGG...................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................GACCAGGAA-------GATAAGTCGGAT---...................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................ACAACAGC---AGCAACA---GCAGC---------A------GCAACA..................................................................................................	27	5	0.20	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................ACAGC---------------A-------------------------------------------------GCAACAGCAG----C---A------GCAACAAC.............................................................................................................................................	26	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................AG----C---A------GCAACAACAGC---AGCAACA---GCAGC---------...............................................................................................................	27	7	0.14	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................A------GCAACAACAGC---AGCAACA---GCAGC---------...............................................................................................................	24	8	0.13	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................GCAACAACAGC---AGCAACA---GCAGC---------A------GT......................................................................................................	26	10	0.10	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................CAACAACAGC---AGCAACA---GCAGC---------A------G.......................................................................................................	24	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................AACAACAGC---AGCAACA---GCAGC---------A------........................................................................................................	22	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................AACAACAGC---AGCAACA---GCA..........................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................GCAACAACAGC---AGCAACA---GC...........................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................CAG------CAACAAC----------------AGCA---------GCAA.........................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................C---A------GCAACAACAGC---AGCAA..................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................G------CAACAAC----------------AGCA---------GCAACAGC------------.........................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................AACAAC----------------AGCA---------GCAACAGC------------A........................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droSec2

AAACATGGGCACTGGGGA-AAA--GGTGG----CAA-----------AAACTGTTG----CCGA-----CGCAACAGC---------AGCAGCATAAG----------------------------------------------CAGC-------------A------AC---AATGG-AGCAGCAGCA---GCAACCGCA---GCA------AGGA-------CAACAG---------CAAC-ATCAG---------CAGCA---------G---CATCAGA-----------TGC------------AGCAGCAC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.................................................................................................................................................................................................................................................AC-ATCAG---------CAGCA---------G---CATCAG...................................	19	3	0.33	1	0	0	0	1

droYak3

GT------TCGCCCAGCA-GCA---GCAG----C-T-------CT--TTGCGGC----------------CCAGCAGCTGCAGCTGCAGCACCAGCA----------------------------------------------ACTGC-------------A------GC---AAC---------AGCA---GCAGCACCAGCAGCA------CCAGCA-------GCAACAACAGCAGCAGCA-------AC---AGCAGCA---------G---CAGC------------AGTAC------------AGCTACTA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.........................................................................................................................................................................................AGCA---GCAGCACCAGCAGCA------C.......................................................................................................	20	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................GCAGCA-------AC---AGCAGCA---------G---CAGC------------AG.......................	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................GCA-------GCAACAACAGCAGCAGCA-------AC---AGCAGC.......................................................	29	18	0.06	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................AC---------AGCA---GCAGCACCAGCAGC...............................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................GCA-------GCAACAACAGCAGCAGCA-------AC---AG...........................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................AACAACAGCAGCAGCA-------AC---AGC..........................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................AGCA-------GCAACAACAGCAGCAGCA-------AC---AGC..........................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................GCAGCA-------AC---AGCAGCA---------G---CA.......................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................GCAGCAGCA-------AC---AGCAGCA---------G---CAGC------------AG.......................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

GC--AGACGCGCC-TGCA-GCG----CAA----AAA---------GCAGGCCAAC---ACCCA-------TCACCAGC------A----------------------------------------------------------GCAAC-------------AGCAGCAGCAGCAGCACCAACAACATCAGCAGCA---------GCA------ACAACAGTCAACAGT-G---CAACAACAGC----------------AGCA---------G---CAGCA---------GCAACTC--------------CATGTG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..............................................................................................................................................................................................................................................ACAGC----------------AGCA---------G---CAGCA---------GCAACTC--------------C.....	23	4	0.25	1	1	0	0	0	0	0	0
....................................................................................A----------------------------------------------------------GCAAC-------------AGCAGCAGCAGCAGCACCA.........................................................................................................................................	25	5	0.20	1	0	0	0	0	1	0	0
...........................................................................AGC------A----------------------------------------------------------GCAAC-------------AGCAGCAGCAGCAGCAC...........................................................................................................................................	26	6	0.17	1	0	0	0	1	0	0	0
........................................................................................................................................................................................CATCAGCAGCA---------GCA------ACAACA..................................................................................................	20	10	0.10	1	0	0	0	0	0	1	0
.......................................................................................................................................................................................ACATCAGCAGCA---------GCA------ACAA....................................................................................................	19	12	0.08	1	1	0	0	0	0	0	0
..................................................................................................................................................................................CAACAACATCAGCAGCA---------G................................................................................................................	18	16	0.06	1	0	0	0	0	0	1	0
.......................................................................CACCAGC------A----------------------------------------------------------GCAAC-------------AGCAGCA.....................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0

-7.5	-7.5	-7.1	-7.1

dmo_986

scaffold_6496:5660425-5660469 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads