ID:

dmo_984

 Coordinate:

scaffold_6496:5587523-5587567 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.4 -6.6

Flybase annnotation

intron [Dmoj\GI20091-in]; CDS [Dmoj\GI20091-cds]; exon [dmoj_GLEANR_4975:4]; exon [dmoj_GLEANR_4975:3]; CDS [Dmoj\GI20091-cds]

Repeatable elements

NameClassFamilyStrand
(CAA)nSimple_repeatSimple_repeat+
mature
  1. scaffold_6473:8893534-8893553 +
  2. dmo_984  scaffold_6496:5587540-5587559 +
  3. scaffold_6540:3964021-3964040 -
star

Sense Strand Reads

##################################################---------------------------------------------##################################################
TGAATGCCATGGAGAGCATGTTGCAGCAGCAGGGCCAGCAGGCACAACAGGTGCAGCAGGCACAGCAACAGGTGCAACAACAGCAACAGCAGCAGCAGCAACAACAACAACAACAACAATTGGGCATTGGCACCGATGATTTGCG
**************************************************.(((.((..((((........)))).............)).))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M060
embryo
 M046
female body
 V110
male body		 V049
head
..................................................................................................................AACAATTGGGCATTGGCAC............ 19 0 2 0.50 1 1 0 0 0
...................................................................ACAGGTGCAACAACAGCAAC.......................................................... 20 0 3 0.33 1 0 1 0 0
...................................................................ACCGGTACAACAACAGCAACAGCAGC.................................................... 26 2 5 0.20 1 1 0 0 0
....TACGATGGAGCGCATGTT........................................................................................................................... 18 3 20 0.15 3 0 0 2 1
....................................................................................AACAGCAGCAGCAGCAACAA......................................... 20 0 20 0.05 1 0 1 0 0
...............................................................................ACAGCAACAGCAGCAGCAGCAAC........................................... 23 0 20 0.05 1 1 0 0 0
.............................................................................................AGCAGCAACAACAACAACAAC............................... 21 0 20 0.05 1 0 1 0 0
.........................................................................GCAACAACAGCAACAGCAGCAG.................................................. 22 0 20 0.05 1 0 1 0 0
.................................................................................................GCAACAACAACAACAACAACAA.......................... 22 0 20 0.05 1 0 1 0 0

Anti-sense strand reads

ACTTACGGTACCTCTCGTACAACGTCGTCGTCCCGGTCGTCCGTGTTGTCCACGTCGTCCGTGTCGTTGTCCACGTTGTTGTCGTTGTCGTCGTCGTCGTTGTTGTTGTTGTTGTTGTTAACCCGTAACCGTGGCTACTAAACGC
**************************************************.(((.((..((((........)))).............)).))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total V041
embryo
....................................................CGTTGTTCGTGTCGTAGTCCAC....................................................................... 22 3 13 0.08 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6496:5587473-5587617 + dmo_984 TGAATG---C----CATG-GAGAGCATGT--------------------TG--CAGCAGCAGG------GCCAG-C------------------------------AGGCACAACAG------G---------TG---CAGC------------------------AGGCACAGCAACAGGTGCAACAACAG---CAACAGCA---------GCAGCAGC---AACAACA---------------------------------------------------------ACAACAACAACAA--TTG----GGCATTGGCACC----GATGATT-----TGCG-
droVir3 scaffold_12875:20539289-20539394 - TGAATG---C----CATG-GAAAGCATGC--------------------TC--CAGCAGCAGG------GACAA-C------------------------------AGGCA------------C---------AA------------------------------------------------CAACAACAA---CAACAACA---------ACAGCAGC------------------------------------------------------------------------AACAACAA--CTG----GGCATAGGCACG----GACGATT-----TGCG-
droGri2 scaffold_8188:1907-2018 + TCAATG---C----CATG-GAGAGCATTC--------------------TC--CAACAACAAC------AACAA----------------------------------------CAG---GGAC---------AG---CAG---------------------CAGC------A------------------A---CAACAACA---------------------------------ACAGC---AGC-AG--------------------------------C---AGCAAC---AACAA--CTT----GGCATAGGAACC----GATGATT-----TGCG-
droWil2 scf2_1100000004585:4709880-4710023 - TGC-------------TG-C--AGC------AGCCGCAGCAGCAGCACA-A--------------------CAG----------C---------------------AG---CAACAA------C---------AG------C------------A---GCAGCAAC------AACA---------------------ACAACA---------GCAGCAGCAACA---GC---AACAACAGC---AG-CAACAGCAGCAACAACATCAGCAACAAAATGGTCGC---GACGGC--------------------------AGC----AACAGTT-----CACG-
dp5 XR_group6:2679166-2679306 + CCAGTG---T----CATG-ACCAGTG---------------CC-------A--CAGCCGCCTG----T-CTAGG-CG------------GAAGCAGCAACA---------------CGAGTATC---------AG------CACCAACAACAACAACA---ACAA------------------CA------G---CAACAACA---------GCAACAACAATA---ACA---ATAACAAT---GT---------------------------------GCAC---ATTAGC--------------------------AAC----AACAATT-----TGC--
droPer2 scaffold_2:6623188-6623326 + AA--TC---T----CATC-GGGAGGCTGC--------------------AG--CAGCAG------------CAG-------------------------CAGC---AA---CA---A------CAG------CAGCAGCAG---------------------CAAC------AACA------GCAG---CAG---CAGCAACA---------ACAGCAGC---A---GC---A---GCA-C---AAG-G--------------------------------ACAAGGCGGACGACACCGA--CTT----CTAATTTGCATA----TCTTAAT-----TGCG-
droAna3 scaffold_13337:17094558-17094699 + ACAGAT---T----CAGC-AACAGCA---------------GCTCCAGCAAC--------AGC------AGCAG-CA------------A---------CTGC---AA---------------C---------AA---CAGCAGCAACAGCAACT------CCAGC------A---------ACA------G---CAG---CA---------GCAGCAACTACA---AC---AACAGCAAATGCAAC-A---------GCA--------------------GC---TCCAGC--------------------AACAGCAAC----AACAGTT-----CGTA-
droBip1 scf7180000394857:38-182 - AGAACG---G----CAAC-AACATCA---------------------CGAGCA---------------------------GCAGCGGCAA---------CAGC---AACAACATCAG---GAGC---------AG---CAG---------------------CGGC------AACA------GCAACA---ACATCAC---GAGCAGCAGCGGCAACA---------GCA------ACAAA----------------------------------A-----------TCAGCAGCAATAATT-AG----AAATTAGTCCTC----GGCAAGT-----TTCG-
droKik1 scf7180000302610:160242-160376 + CAAGAA-GAC----CAAC-CA--GAA---GCAGCA---GCAGCAGCAAGCGCA---------------------------GCAGCAGCAC---------CAGC---AACAGCAGCAG---GCGC---------AG---CAG---------------------CAAC------A------------------C---CAGCAGCA---------GCAGCAAC------AGCAGCATCAGCAGC---TG-CAT-----------------------------TCGC---CA---C--------------------------TGC----AT-CATC-----TGCA-
droFic1 scf7180000454065:802584-802719 - TGCAGG---C----CATG-CA--GC------AGTT---GCAGCTGCACATGCA---------------------------GCAGCAGCAC---------CAGC---AA---------------C---------TG---CAGC------------------------AGCACCACCAACAGATGCAGCAGCAG---CAGCACCA---------CCACCAGC---AACAGCA------GCATC---AGC-AG--------------------------------C---AGCAGC--------------------------AGC----AACT-CT-----TGCC-
droEle1 scf7180000491215:598473-598610 + TGAGTG---A----CAG-----AGCAGAG---------TCAACCA-------------AAAGACCCGGCAGCA----------A---------------CA---------------GCAGCAGC---------AG------GAGCAACAACAACAACA---ACAA------------------CA------A---CAACAACA---------ACAACAACAACA---ACA---ACAACAAC---AAC-A--------------------------------AC---AACAGC--------------------------AAC----AGCAACATGTTGCGTG-
droRho1 scf7180000777386:211825-211948 + AG--TG---A----CAAG-TGACGCA---TGT------GCAGC------AG--C------AAC------AGCAA-------------------------CAGC---AA------------CAGCAG------CAGCAGCAGC------------A---GCAACAGC------A---------ACA------G---CAA---CA---------GCAACAGCAACA---GC---AACAGCAAC---AG-CAA--------------------------------C---AGCAGC--------------------------AGC----AGC-ATC-----AGCA-
droBia1 scf7180000302428:10380115-10380241 - GCAACA---C----CAAC-AGCAGCA---------------GCAGCATATGCA---------------------------ACAGCAGCAA---------CACC---AG---------------C---------AG---CAGCAGCAACATCAACAGCA---GCAA------------------CA------T---CAGCAGCA---------GCAGCAGCAACA---ACA---TCAGCAGC---AGC-AA--------------------------------C---AGCAGC--------------------------AGC----AACAA------------
droTak1 scf7180000415914:151397-151535 - TGAACACC-ACCGCCATGTTGATGCA---CCACC------------AGCAG--C------AGC------AGCAGGCG---GCCGCAGC---------------------------------------------AGCAGCAG------------CT---GCAGCAGC-------------CCAGCAGCAACAG---CAGCAGCA---------GCAGCAGC---A---GC---A---ACA-C---A------------------------------ATGGACGC---GACGGC--------------------------AGC----AACAGTT-----CGCG-
droEug1 scf7180000409466:2548279-2548423 + TGCAGG---C----CATG-CA--GC------AGTT---GCAGCTGCACATGCA---------------------------GCAGCAGCAC---------CAGC---AA---------------C---------TG---CAGC------------------------AGCAACATCAGCAGATGCA------------G---CA---------GCAGCAGCAACA---GCA---ACAGCAGC---------------------------------------------------AGCCACAC--TTGCCCCACCATGGGCACCACCAGATGGTG-----AGCGC
dm3 chrX:13963571-13963699 + TCAATG---G----TGGC-GGTGTC-------------GCAGCAACAACTG--------------------CAA-CA------A---------------CA---------------G---CAGCAG------CAGCAGCAGC------AGCAACA------------------T----TGGTGCAACAACAG---CAGCAGCA---------ACAGCAAC---AACAACA------ACATGAACAAC-G------------------------A-------GC---AACTGC--------------------------AAC----GGCGA------------
droSim2 x:8909500-8909632 + CAAATG---T----CAAA-AGGTACA---TCA---------------GCAAC--------AAG------AACGA-CACGAGCAA---------------CAACATCAGCAGCAGCAA------C---------TG------T------------A---GCAGCAAC------A------------------T---CAGCAGCA---------GCAGCAGCAGCA---GC---AACTGCAAC---AG-CAA--------------------------------C---TGCAGC--------------------------AGC----AACATCA-----AGCG-
droSec2 scaffold_1:12264752-12264884 + CGACTG---C----AATT-TG-TGGA---CTGCG------------AGCAG--CAGCAG------------CAG-AA------------G---------CAGC---AA---------------CAGCCGCAGCAGCAGCAA------------C------------------------TGCTGCAGCAACAG---CAACTGCA---------GCAGAGGC---AACTTCA---GCAGCAAC-------G------------------------A-------GC---AACTGC--------------------------AAT----GACGATT-----TGTG-
droYak3 2L:2082092-2082226 - TCAGTG---G----CAGC-AACAGCA---------------ACTGCAGCAGC--------AGC------AACAG-C------------------------------AGCAGCAACAA------C---------AG------C------------A---GCAGCAAC------AGCA---------------------GCAACA---------GCAGCAACAGCA---GC---AGCAGCAGC---AG-CAACAGCAGCAGCAACAACA-----------AGGGC---AGCGGC--------------------------GAC----G------------ACG-
droEre2 scaffold_4820:8935800-8935938 + CGC-TG---T----CCAG-CAGAGCA---GCAGCA---GCAACAACGAAAACA---------------------------ACAACAACAC---------CAGC---AG---------------C---------AG---CAGC---GGCAGCAGCAACA---ACAC---------------AAACA------G---CGGCAGCA---------GCAGCAACAACA---ATA---ATAACAAC---AAC-A-----------------------------ACAGC---GTTGGC--------------------------AAC----AACAAT-----------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TGAATG---C----CATG-GAGAGCATGT--------------------TG--CAGCAGCAGG------GCCAG-C------------------------------AGGCACAACAG------G---------TG---CAGC------------------------AGGCACAGCAACAGGTGCAACAACAG---CAACAGCA---------GCAGCAGC---AACAACA---------------------------------------------------------ACAACAACAACAA--TTG----GGCATTGGCACC----GATGATT-----TGCG-SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................................................................AACAA--TTG----GGCATTGGCAC......................1920.501000010
................................................................................................................................................................................ACAGGTGCAACAACAG---CAAC...............................................................................................................................................2030.331100000
....................................................................................................................................................................................................AACAGCA---------GCAGCAGC---AACAA..................................................................................................................20200.051100000
............................................................................................................................................................................................ACAG---CAACAGCA---------GCAGCAGC---AAC....................................................................................................................23200.051000010
......................................................................................................................................................................................................................AGCAGC---AACAACA---------------------------------------------------------ACAACAAC...............................................21200.051100000
......................................................................................................................................................................................GCAACAACAG---CAACAGCA---------GCAG..............................................................................................................................22200.051100000
..........................................................................................................................................................................................................................GC---AACAACA---------------------------------------------------------ACAACAACAACAA--........................................22200.051100000
droVir3
TGAATG---C----CATG-GAAAGCATGC--------------------TC--CAGCAGCAGG------GACAA-C------------------------------AGGCA------------C---------AA------------------------------------------------CAACAACAA---CAACAACA---------ACAGCAGC------------------------------------------------------------------------AACAACAA--CTG----GGCATAGGCACG----GACGATT-----TGCG-SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............ATG-GAAAGCATGC--------------------TC--CAGCAGCAGG------.................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................CAACAACA---------ACAGCAGC------------------------------------------------------------------------AACAACAA--CT......................................2670.141001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................CAA---CAACAACA---------ACAGCAGC------------------------------------------------------------------------AA................................................21200.102000000000000000000000000000010010000000000000000000000000000000
.......................................................................................................................................................................................................AACA---------ACAGCAGC------------------------------------------------------------------------AACAACAA--C.......................................21200.102000000000000000000000000000000000000000000000000000000000000002
.............................................................................................................................................................................................CAA---CAACAACA---------ACAGCAGC------------------------------------------------------------------------AAC...............................................22200.051000000000000000000000000000000000000001000000000000000000000000
..........................................................................................................................................................................................................A---------ACAGCAGC------------------------------------------------------------------------AACAACAA--CT......................................19200.051001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................AACAACA---------ACAGCAGC------------------------------------------------------------------------AACAACAA--C.......................................24200.051000000000000001000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................A---CAACAACA---------ACAGCAGC------------------------------------------------------------------------AA................................................19200.051000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................................................................................................................CA---------ACAGCAGC------------------------------------------------------------------------AACAACAA--........................................18200.051001000000000000000000000000000000000000000000000000000000000000
droGri2
TCAATG---C----CATG-GAGAGCATTC--------------------TC--CAACAACAAC------AACAA----------------------------------------CAG---GGAC---------AG---CAG---------------------CAGC------A------------------A---CAACAACA---------------------------------ACAGC---AGC-AG--------------------------------C---AGCAAC---AACAA--CTT----GGCATAGGAACC----GATGATT-----TGCG-SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..........................................................................................................................AC---------AG---CAG---------------------CAGC------A------------------A---CAACAACA---------------------------------ACA.......................................................................................................24200.15330
........................................................................................................................................................................................................ACA---------------------------------ACAGC---AGC-AG--------------------------------C---AGCAAC---AACA...........................................24200.10220
.........................................................................................................................................................................................................CA---------------------------------ACAGC---AGC-AG--------------------------------C---AGCAAC---...............................................19200.10220
..........................................................................................................................................................................................................A---------------------------------ACAGC---AGC-AG--------------------------------C---AGCAAC---AAC............................................21200.05110
...............................................................................................................................................................................................A---CAACAACA---------------------------------ACAGC---AGC-AG--------------------------------C---A.......................................................21200.05110
droWil2
TGC-------------TG-C--AGC------AGCCGCAGCAGCAGCACA-A--------------------CAG----------C---------------------AG---CAACAA------C---------AG------C------------A---GCAGCAAC------AACA---------------------ACAACA---------GCAGCAGCAACA---GC---AACAACAGC---AG-CAACAGCAGCAACAACATCAGCAACAAAATGGTCGC---GACGGC--------------------------AGC----AACAGTT-----CACG-SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................................................................AAATGGTCGC---GACGGC--------------------------AGC----.................1911.00100001
...............................................................................................................................................................................A---------------------ACAACA---------GCAGCAGCAACA---...................................................................................................................19200.20400040
.........................................................................................................................................................................................................................................................ACAGCAGCAACAACATCAGC.........................................................................2090.11100001
...............................................................................................................................................................CAGCAAC------AACA---------------------ACAACA---------GCAGC.............................................................................................................................22200.05100010
............................................................................................................................................................................................................................................ACAGC---AG-CAACAGCAGCAAC..................................................................................20200.05100010
.................G-C--AGC------AGCCGCAGCAGCAGCA.......................................................................................................................................................................................................................................................................................................21200.05100010
..........................................................................................................................................................A---GCAGCAAC------AACA---------------------ACAACA---------GCAG..............................................................................................................................23200.05101000
................................................................................................................................................................AGCAAC------AACA---------------------ACAACA---------GCAGCAGCAAC.......................................................................................................................27200.05100010
.....................................................................................................................................................................C------AACA---------------------ACAACA---------GCAGCAGCAA........................................................................................................................21200.05101000
............................................................................................................................................................................AACA---------------------ACAACA---------GCAGCAGCAA........................................................................................................................20200.05100010
..............................................ACA-A--------------------CAG----------C---------------------AG---CAACAA------C---------AG------C------------A---GC......................................................................................................................................................................................23200.05100010
.................................................................................................................................................................GCAAC------AACA---------------------ACAACA---------GCAGCAGCA.........................................................................................................................24200.05101000
..........................................................................................................................................................A---GCAGCAAC------AACA---------------------ACAAC............................................................................................................................................18200.05100010
.........................................................................................................................................................................................................CA---------GCAGCAGCAACA---GC---AACAA.........................................................................................................21200.05100010
.............................................................................................................................................C------------A---GCAGCAAC------AACA---------------------ACAACA---------G.................................................................................................................................21200.05100001
dp5
CCAGTG---T----CATG-ACCAGTG---------------CC-------A--CAGCCGCCTG----T-CTAGG-CG------------GAAGCAGCAACA---------------CGAGTATC---------AG------CACCAACAACAACAACA---ACAA------------------CA------G---CAACAACA---------GCAACAACAATA---ACA---ATAACAAT---GT---------------------------------GCAC---ATTAGC--------------------------AAC----AACAATT-----TGC--SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................ACAACAACA---ACAA------------------CA------G---CAACAAC............................................................................................................................................23200.0510010000000
.........................................................................................................................................................CAACA---ACAA------------------CA------G---CAACAACA---------..................................................................................................................................20200.0510000000100
droPer2
AA--TC---T----CATC-GGGAGGCTGC--------------------AG--CAGCAG------------CAG-------------------------CAGC---AA---CA---A------CAG------CAGCAGCAG---------------------CAAC------AACA------GCAG---CAG---CAGCAACA---------ACAGCAGC---A---GC---A---GCA-C---AAG-G--------------------------------ACAAGGCGGACGACACCGA--CTT----CTAATTTGCATA----TCTTAAT-----TGCG-SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................................C---AA---CA---A------CAG------CAGCAGCAG---------------------C...................................................................................................................................................................................19200.051001000
......................................................................................................................................................................................GCAG---CAG---CAGCAACA---------ACAGCAGC---A---...................................................................................................................24200.051001000
.....................................................................................................GC---AA---CA---A------CAG------CAGCAGCAG---------------------....................................................................................................................................................................................19200.051001000
............................................................................................................................................G---------------------CAAC------AACA------GCAG---CAG---CAGCAACA---------..................................................................................................................................24200.051001000
............................................................................................................................................G---------------------CAAC------AACA------GCAG---CAG---CAGC...............................................................................................................................................20200.051001000
...............................................................................................................CA---A------CAG------CAGCAGCAG---------------------CAAC------A.........................................................................................................................................................................20200.051010000
..................................................................................................................................................................CAAC------AACA------GCAG---CAG---CAGCAA.............................................................................................................................................21200.051001000
.............................................................................................................................G------CAGCAGCAG---------------------CAAC------AACA------GCAG---CA.......................................................................................................................................................24200.051001000
.....................................................................................................................................................................................................GCAACA---------ACAGCAGC---A---GC---A---GC........................................................................................................20200.051001000
.....................................................CAGCAG------------CAG-------------------------CAGC---AA---CA---A------CA.........................................................................................................................................................................................................................20200.051001000
......................................................................................................C---AA---CA---A------CAG------CAGCAGCAG---------------------CAA.................................................................................................................................................................................21200.051001000
...........................................................................................................................................AG---------------------CAAC------AACA------GCAG---CAG---CAGC...............................................................................................................................................21200.051001000
....................................................................................................................................................................................................AGCAACA---------ACAGCAGC---A---GC---A---GC........................................................................................................21200.051001000
droAna3
ACAGAT---T----CAGC-AACAGCA---------------GCTCCAGCAAC--------AGC------AGCAG-CA------------A---------CTGC---AA---------------C---------AA---CAGCAGCAACAGCAACT------CCAGC------A---------ACA------G---CAG---CA---------GCAGCAACTACA---AC---AACAGCAAATGCAAC-A---------GCA--------------------GC---TCCAGC--------------------AACAGCAAC----AACAGTT-----CGTA-SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................AA---------------C---------AA---CAGCAGCAACAGCAACT------CCAGC------..........................................................................................................................................................................2712.002020000
....................................................................................................................................................................................................AG---CA---------GCAGCAACTACA---AC---AACAGC........................................................................................................2411.001010000
............................................................................................................................................................................A---------ACA------G---CAG---CA---------GCAGCAACTACA---AC---AAC...........................................................................................................2711.001100000
.....................................................................................................................................AA---CAGCAGCAACAGCAACT------CCAGC------A---------ACA------.......................................................................................................................................................2811.001100000
.................................................................................................................................................................................................................................................TGCAAC-A---------GCA--------------------GC---TCCAGC--------------------AAC...........................2111.001100000
....................................................................................................................................................................................................................................................AAC-A---------GCA--------------------GC---TCCAGC--------------------AACAGCAAC----A................2511.001000001
...GAT---T----CAGC-AACAGCA---------------GCTCCAGC.....................................................................................................................................................................................................................................................................................................2311.001100000
...............................................................................................................................................GCAACAGCAACT------CCAGC------A---------ACA------G---CAG---CA---------GC................................................................................................................................2920.501010000
..........................................................................................................AA---------------C---------AA---CAGCAGCAACAGCAACT------.....................................................................................................................................................................................2220.501010000
...................................................................................................................................................................................................................................................................CA--------------------GC---TCCAGC--------------------AACAGCAAC----A................2030.331100000
...................AACAGCA---------------GCTCCAGCAAC--------..........................................................................................................................................................................................................................................................................................1830.331100000
....................................................................................................................................................................................................................................................AAC-A---------GCA--------------------GC---TCCAGC--------------------AAC...........................1830.331100000
....................................................................................................................................................................................................................GCAGCAACTACA---AC---AACAGCA.......................................................................................................2130.331100000
.................................................................................................................................................................CCAGC------A---------ACA------G---CAG---CA---------GCAGCA............................................................................................................................21200.153001002
.................................................................................................................................................................CCAGC------A---------ACA------G---CAG---CA---------GCAGC.............................................................................................................................20200.102020000
......................................................................................................C---AA---------------C---------AA---CAGCAGCAACAGCA..............................................................................................................................................................................................20200.051010000
.....................................................................................................GC---AA---------------C---------AA---CAGCAGCAACAGC...............................................................................................................................................................................................20200.051100000
droBip1
AGAACG---G----CAAC-AACATCA---------------------CGAGCA---------------------------GCAGCGGCAA---------CAGC---AACAACATCAG---GAGC---------AG---CAG---------------------CGGC------AACA------GCAACA---ACATCAC---GAGCAGCAGCGGCAACA---------GCA------ACAAA----------------------------------A-----------TCAGCAGCAATAATT-AG----AAATTAGTCCTC----GGCAAGT-----TTCG-SizeHit CountTotal NormTotal
No Reads
droKik1
CAAGAA-GAC----CAAC-CA--GAA---GCAGCA---GCAGCAGCAAGCGCA---------------------------GCAGCAGCAC---------CAGC---AACAGCAGCAG---GCGC---------AG---CAG---------------------CAAC------A------------------C---CAGCAGCA---------GCAGCAAC------AGCAGCATCAGCAGC---TG-CAT-----------------------------TCGC---CA---C--------------------------TGC----AT-CATC-----TGCA-SizeHit CountTotal NormTotal
No Reads
droFic1
TGCAGG---C----CATG-CA--GC------AGTT---GCAGCTGCACATGCA---------------------------GCAGCAGCAC---------CAGC---AA---------------C---------TG---CAGC------------------------AGCACCACCAACAGATGCAGCAGCAG---CAGCACCA---------CCACCAGC---AACAGCA------GCATC---AGC-AG--------------------------------C---AGCAGC--------------------------AGC----AACT-CT-----TGCC-SizeHit CountTotal NormTotal
No Reads
droEle1
TGAGTG---A----CAG-----AGCAGAG---------TCAACCA-------------AAAGACCCGGCAGCA----------A---------------CA---------------GCAGCAGC---------AG------GAGCAACAACAACAACA---ACAA------------------CA------A---CAACAACA---------ACAACAACAACA---ACA---ACAACAAC---AAC-A--------------------------------AC---AACAGC--------------------------AAC----AGCAACATGTTGCGTG-SizeHit CountTotal NormTotal
No Reads
droRho1
AG--TG---A----CAAG-TGACGCA---TGT------GCAGC------AG--C------AAC------AGCAA-------------------------CAGC---AA------------CAGCAG------CAGCAGCAGC------------A---GCAACAGC------A---------ACA------G---CAA---CA---------GCAACAGCAACA---GC---AACAGCAAC---AG-CAA--------------------------------C---AGCAGC--------------------------AGC----AGC-ATC-----AGCA-SizeHit CountTotal NormTotal
No Reads
droBia1
GCAACA---C----CAAC-AGCAGCA---------------GCAGCATATGCA---------------------------ACAGCAGCAA---------CACC---AG---------------C---------AG---CAGCAGCAACATCAACAGCA---GCAA------------------CA------T---CAGCAGCA---------GCAGCAGCAACA---ACA---TCAGCAGC---AGC-AA--------------------------------C---AGCAGC--------------------------AGC----AACAA------------SizeHit CountTotal NormTotal
No Reads
droTak1
TGAACACC-ACCGCCATGTTGATGCA---CCACC------------AGCAG--C------AGC------AGCAGGCG---GCCGCAGC---------------------------------------------AGCAGCAG------------CT---GCAGCAGC-------------CCAGCAGCAACAG---CAGCAGCA---------GCAGCAGC---A---GC---A---ACA-C---A------------------------------ATGGACGC---GACGGC--------------------------AGC----AACAGTT-----CGCG-SizeHit CountTotal NormTotal
No Reads
droEug1
TGCAGG---C----CATG-CA--GC------AGTT---GCAGCTGCACATGCA---------------------------GCAGCAGCAC---------CAGC---AA---------------C---------TG---CAGC------------------------AGCAACATCAGCAGATGCA------------G---CA---------GCAGCAGCAACA---GCA---ACAGCAGC---------------------------------------------------AGCCACAC--TTGCCCCACCATGGGCACCACCAGATGGTG-----AGCGCSizeHit CountTotal NormTotal
No Reads
dm3
TCAATG---G----TGGC-GGTGTC-------------GCAGCAACAACTG--------------------CAA-CA------A---------------CA---------------G---CAGCAG------CAGCAGCAGC------AGCAACA------------------T----TGGTGCAACAACAG---CAGCAGCA---------ACAGCAAC---AACAACA------ACATGAACAAC-G------------------------A-------GC---AACTGC--------------------------AAC----GGCGA------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................................................................AGCAAC---AACAACA------ACATGAACAA................................................................................................2311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................TG--------------------CAA-CA------A---------------CA---------------G---CAGCAG------CAGCA.............................................................................................................................................................................................................2260.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
..............................................................................................................................................................................................AG---CAGCAGCA---------ACAGCAAC---.......................................................................................................................18200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................CAGCAGCA---------ACAGCAAC---AACAACA------A.........................................................................................................2480.2520000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................AG---CAGCAGCA---------ACAGCAAC---AAC....................................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000
..................................................G--------------------CAA-CA------A---------------CA---------------G---CAGCAG------CAGCAGCA..........................................................................................................................................................................................................24200.2040000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
......................................................................................................................................................................................GCAACAACAG---CAGCAGCA---------ACAGCA............................................................................................................................24170.1830000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
........................................................................................................................................................................................AACAACAG---CAGCAGCA---------ACAGC.............................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
.......................................................................CAA-CA------A---------------CA---------------G---CAGCAG------CAGCAGCAGC------..................................................................................................................................................................................................25200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................G--------------------CAA-CA------A---------------CA---------------G---CAGCAG------CAGCAGC...........................................................................................................................................................................................................23200.1530000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.........................................................................................................................AGCAG------CAGCAGCAGC------AGCA..............................................................................................................................................................................................19200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000
......................................................................................................................................................................................GCAACAACAG---CAGCAGCA---------ACAGC.............................................................................................................................23200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
..................................................G--------------------CAA-CA------A---------------CA---------------G---CAGCAG------CAGCAG............................................................................................................................................................................................................22200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
...............................................................................................................................................................................................G---CAGCAGCA---------ACAGCAAC---A......................................................................................................................18200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................G---CAGCAGCA---------ACAGCAAC---AACA...................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................A------A---------------CA---------------G---CAGCAG------CAGCAGCAGC------..................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000200
.......................................................................CAA-CA------A---------------CA---------------G---CAGCAG------CAGCAGCA..........................................................................................................................................................................................................23200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................AGCAGCA---------ACAGCAAC---AACAACA------ACA.......................................................................................................2580.1310000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................TG--------------------CAA-CA------A---------------CA---------------G---CAGCAG------CAGCAGA...........................................................................................................................................................................................................2490.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.........................................................................A-CA------A---------------CA---------------G---CAGCAG------CAGCAGC...........................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................GCAGCA---------ACAGCAAC---AACA...................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................AA-CA------A---------------CA---------------G---CAGCAG------CAGCA.............................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................AG---CAGCAGCA---------ACAGCAAC---AACA...................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................CAA-CA------A---------------CA---------------G---CAGCAG------CAGCA.............................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.........................................................................................................................AGCAG------CAGCAGCAGC------AGCAACA------------------.........................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................A-CA------A---------------CA---------------G---CAGCAG------CAGCA.............................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
............................................................................A------A---------------CA---------------G---CAGCAG------CAGCAGC...........................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
...................................................................................A---------------CA---------------G---CAGCAG------CAGCAGCAGC------A.................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................................AGCAGCA---------ACAGCAAC---AACA...................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................AA-CA------A---------------CA---------------G---CAGCAG------CAGCAGCAGC------..................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................CAA-CA------A---------------CA---------------G---CAGCAG------CAGCAG............................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................CAACAACAG---CAGCAGCA---------A.................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................CA---------ACAGCAAC---AACAACA------ACA.......................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................CAGCAGCA---------ACAGCAAC---AACA...................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................CA---------------G---CAGCAG------CAGCAGCAGC------AG................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................GCAGCA---------ACAGCAAC---AACAA..................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................CAA-CA------A---------------CA---------------G---CAGCAG------CAGCAGCAGC------A.................................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................AG---CAGCAGCA---------ACAGCAAC---AA.....................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................CAACAG---CAGCAGCA---------ACAGCAA...........................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................CAG---CAGCAGCA---------ACAGCA............................................................................................................................17200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................CAA-CA------A---------------CA---------------G---CAGCAG------CAGCAGCAGC------AG................................................................................................................................................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................AA-CA------A---------------CA---------------G---CAGCAG------CAGCAGCA..........................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................A---------------G---CAGCAG------CAGCAGCAGC------AG................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................CAACAG---CAGCAGCA---------ACAGCAAC---A......................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................G---CAGCAGCA---------ACAGCAAC---AAC....................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................G---CAGCAG------CAGCAGCAGC------AGCAAC............................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................A-CA------A---------------CA---------------G---CAGCAG------CAGCAGCAGC------AG................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..........................................................................................................................................................................................CAACAG---CAGCAGCA---------ACAGCA............................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................A-CA------A---------------CA---------------G---CAGCAG------CAGCAGCAGC------AGCA..............................................................................................................................................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.........................................................................................................................................................................................ACAACAG---CAGCAGCA---------ACA...............................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................AACAG---CAGCAGCA---------ACAGCAAC---.......................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................A------A---------------CA---------------G---CAGCAG------CAGCAGCAGC------A.................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................GCAACAACAG---CAGCAGCA---------A.................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................CAACAG---CAGCAGCA---------ACAG..............................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................CAG---CAGCAGCA---------ACAGCAAC---AACA...................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................CAG---CAGCAGCA---------ACAGCAAC---AAC....................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................GCAACAACAG---CAGCAGCA---------ACAG..............................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................CAACAACAG---CAGCAGCA---------ACA...............................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CAAATG---T----CAAA-AGGTACA---TCA---------------GCAAC--------AAG------AACGA-CACGAGCAA---------------CAACATCAGCAGCAGCAA------C---------TG------T------------A---GCAGCAAC------A------------------T---CAGCAGCA---------GCAGCAGCAGCA---GC---AACTGCAAC---AG-CAA--------------------------------C---TGCAGC--------------------------AGC----AACATCA-----AGCG-SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................A---------------CAACATCAGCAGCAG....................................................................................................................................................................................................................................16140.07100000000001000000
............................................................................................................................................................................................................................................GCAAC---AG-CAA--------------------------------C---TGCAGC--------------------------A.......................18200.05100010000000000000
....................................................................................................................................................................................................AGCAGCA---------GCAGCAGCAGC.......................................................................................................................18200.05100000000001000000
.........................................................................................................................................................................................................CA---------GCAGCAGCAGCA---GC---AACTG.........................................................................................................21200.05100100000000000000
....................................................................................................................................................................AC------A------------------T---CAGCAGCA---------GCAGCA............................................................................................................................18200.05100000001000000000
droSec2
CGACTG---C----AATT-TG-TGGA---CTGCG------------AGCAG--CAGCAG------------CAG-AA------------G---------CAGC---AA---------------CAGCCGCAGCAGCAGCAA------------C------------------------TGCTGCAGCAACAG---CAACTGCA---------GCAGAGGC---AACTTCA---GCAGCAAC-------G------------------------A-------GC---AACTGC--------------------------AAT----GACGATT-----TGTG-SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................CAG--CAGCAG------------CAG-AA------------G---------CAG................................................................................................................................................................................................................................................18200.3060060
.....................................................CAGCAG------------CAG-AA------------G---------CAGC---AA---------------CAG........................................................................................................................................................................................................................21200.2041030
................................................CAG--CAGCAG------------CAG-AA------------G---------CAGC---AA---------------...........................................................................................................................................................................................................................21200.2041120
.................................................AG--CAGCAG------------CAG-AA------------G---------CAGC---............................................................................................................................................................................................................................................18200.1530030
......................................................AGCAG------------CAG-AA------------G---------CAGC---AA---------------CA.........................................................................................................................................................................................................................19200.1020020
.........................................................AG------------CAG-AA------------G---------CAGC---AA---------------CAGC.......................................................................................................................................................................................................................18200.1020020
................................................CAG--CAGCAG------------CAG-AA------------G---------CAGC---A...........................................................................................................................................................................................................................................20200.1020020
..................................................G--CAGCAG------------CAG-AA------------G---------CAGC---AA---------------CA.........................................................................................................................................................................................................................21200.1020020
........................................................CAG------------CAG-AA------------G---------CAGC---AA---------------CAG........................................................................................................................................................................................................................18200.1020020
.....................................................CAGCAG------------CAG-AA------------G---------CAGC---AA---------------...........................................................................................................................................................................................................................18200.0510010
...............................................GCAG--CAGCAG------------CAG-AA------------G---------CAGC---............................................................................................................................................................................................................................................20200.0510010
.......................................................GCAG------------CAG-AA------------G---------CAGC---AA---------------CAGC.......................................................................................................................................................................................................................20200.0510010
........................................................CAG------------CAG-AA------------G---------CAGC---AA---------------CAGC.......................................................................................................................................................................................................................19200.0510010
..................................................G--CAGCAG------------CAG-AA------------G---------CAGC---AA---------------CAGT.......................................................................................................................................................................................................................23200.0510010
.................................................AG--CAGCAG------------CAG-AA------------G---------CAGC---A...........................................................................................................................................................................................................................................19200.0510010
..................................................G--CAGCAG------------CAG-AA------------G---------CAGC---AA---------------CAG........................................................................................................................................................................................................................22200.0510010
.................................................AG--CAGCAG------------CAG-AA------------G---------CAGC---AA---------------CA.........................................................................................................................................................................................................................22200.0510010
.....................................................CAGCAG------------CAG-AA------------G---------CAGC---AA---------------CAGC.......................................................................................................................................................................................................................22200.0510010
................................................CAG--CAGCAG------------CAG-AA------------G---------CAGC---AA---------------CAG........................................................................................................................................................................................................................24200.0510010
droYak3
TCAGTG---G----CAGC-AACAGCA---------------ACTGCAGCAGC--------AGC------AACAG-C------------------------------AGCAGCAACAA------C---------AG------C------------A---GCAGCAAC------AGCA---------------------GCAACA---------GCAGCAACAGCA---GC---AGCAGCAGC---AG-CAACAGCAGCAGCAACAACA-----------AGGGC---AGCGGC--------------------------GAC----G------------ACG-SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................................C---AGCAGCAGC---AG-CAACAGCAGCAGC..................................................................................25200.30600000000006
...........................................................................................................GCAGCAACAA------C---------AG------C------------A---GCAGCAAC------AGCA---------------------GC...............................................................................................................................................29180.06100100000000
...........................................................................................................GCAGCAACAA------C---------AG------C------------A---GCAGC...................................................................................................................................................................................20200.05100100000000
.....................................................................AACAG-C------------------------------AGCAGCAACAA------C---------AG------C------------A---GCA.....................................................................................................................................................................................25200.05101000000000
.............................................................................................................AGCAACAA------C---------AG------C------------A---GCAGCAAC------AGC.......................................................................................................................................................................24200.05100100000000
..........................................................................................................AGCAGCAACAA------C---------AG------C------------A---GCAGCAAC------AGC.......................................................................................................................................................................27200.05100100000000
....................................................................................................................................................................................................................................................AG-CAACAGCAGCAGCAACA..............................................................................19200.05101000000000
.....................................................................AACAG-C------------------------------AGCAGCAACAA------C---------AG------C------------A---GC......................................................................................................................................................................................24200.05101000000000
............................................................AGC------AACAG-C------------------------------AGCAGCAACA..................................................................................................................................................................................................................................19200.05101000000000
droEre2
CGC-TG---T----CCAG-CAGAGCA---GCAGCA---GCAACAACGAAAACA---------------------------ACAACAACAC---------CAGC---AG---------------C---------AG---CAGC---GGCAGCAGCAACA---ACAC---------------AAACA------G---CGGCAGCA---------GCAGCAACAACA---ATA---ATAACAAC---AAC-A-----------------------------ACAGC---GTTGGC--------------------------AAC----AACAAT-----------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................A---GCAGCA---GCAACAACGAAAA...................................................................................................................................................................................................................................................................................................2011.0010000010
....................................................................................................................................................................................AAACA------G---CGGCAGCA---------GCAGCAAC..........................................................................................................................2211.0010000100
....................................................................................................................................................................................AAACA------G---CGGCAGCA---------GCAGC.............................................................................................................................1930.3310000010
......................................................................................................................................................................................ACA------G---CGGCAGCA---------GCAGCAACAAC.......................................................................................................................2330.3310000010
................................................................................ACAACAACAC---------CAGC---AG---------------C---------AG---............................................................................................................................................................................................................1940.2510000010
...................................................................................ACAACAC---------CAGC---AG---------------C---------AG---CAGC---.....................................................................................................................................................................................................2060.1710000100
................AG-CAGAGCA---GCAGCA---GCA.............................................................................................................................................................................................................................................................................................................1860.1710000010
.....................................................................................................................................AG---CAGC---GGCAGCAGCAACA---.....................................................................................................................................................................................19180.0610000010
...................................................................................................CAGC---AG---------------C---------AG---CAGC---GGCAGCA..............................................................................................................................................................................................20200.0510000100
....................................................................................................AGC---AG---------------C---------AG---CAGC---GGCAGCAGCA...........................................................................................................................................................................................22200.0510000010
......................................................................................................C---AG---------------C---------AG---CAGC---GGCAGCAGC............................................................................................................................................................................................19200.0510000010

Generated: 05/17/2015 at 11:30 PM