dmo_983

Name	Class	Family	Strand
(TG)n	Simple_repeat	Simple_repeat	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ACAGTCGACGCAACACGGCAACGGAATTCAGTTACATACTGCAACGGCAGGTGAGTGCTTGCCACACGTTGTAAATAGTAGCACATATACGCCCACACACACACACACACACCCGCACACACACACACACACCCGCACACACACACACACCTGTACATTCACTTTCACACATCCTCGCACACTCACCCTTTATTAATTGCATGCATTTTTGGCTGCCCGGAAGCCTTTTTTGGGTCCTTCATGTTGTGGGC ************************************************************************************..............................................................*****************************************************************************************************	Read size	Hit Count	Total Norm	Total	M046 female body	M060 embryo
......................................................................................ATACGCCCACACACACACAC.................................................................................................................................................	20	6	0.17	1	1	0
............................................................................................................ACACCCGCACACACACACAC...........................................................................................................................	20	20	0.05	1	0	1
................................................................................................................................ACACCCGCACACACACACAC.......................................................................................................	20	20	0.05	1	0	1

TGTCAGCTGCGTTGTGCCGTTGCCTTAAGTCAATGTATGACGTTGCCGTCCACTCACGAACGGTGTGCAACATTTATCATCGTGTATATGCGGGTGTGTGTGTGTGTGTGTGGGCGTGTGTGTGTGTGTGTGGGCGTGTGTGTGTGTGTGGACATGTAAGTGAAAGTGTGTAGGAGCGTGTGAGTGGGAAATAATTAACGTACGTAAAAACCGACGGGCCTTCGGAAAAAACCCAGGAAGTACAACACCCG *****************************************************************************************************..............................................................************************************************************************************	Read size	Hit Count	Total Norm	Total	V041 embryo	V049 head	V110 male body
.......................................................................................................GTGTGTGTGGGCGTGTGTGTGT..............................................................................................................................	22	20	0.05	1	0	1	0
............................................................................................................TGTGGGCGTGTGTGTGTGTGTG.........................................................................................................................	22	20	0.05	1	0	0	1
...................................................................................................................GTGTGTGTGTGTGTGTGGGCGT..................................................................................................................	22	20	0.05	1	1	0	0
...........................................................................................................................GTGTGTGTGGGCGTGTGTGTGT..........................................................................................................	22	20	0.05	1	0	1	0
................................................................................................................................TGTGGGCGTGTGTGTGTGTGTG.....................................................................................................	22	20	0.05	1	0	0	1
...............................................................................................GTGTGTGTGTGTGTGTGGGCGT......................................................................................................................................	22	20	0.05	1	1	0	0

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6496:5522430-5522680 -	dmo_983	ACAG----------TCG----AC--GCAA------CA----------------------------------------C-GGCAAC-GGAATTCAGTTACATAC---TGCA----------ACGGCAGGTG------------------------AGTGCTT---------------------------GCCACACGTTGTAAAT--------AGT--------------------AG----------CACATA--TACGC----------------------------CCACACACA------------------CACACACACACCCGCAC-AC------------ACACACA------CACACCC------------G---------------------------------------------------CACACACACACACACCTG----TACATTC------A------CT--T-------------T---------CACACA---------------TCCTCG------------------C-----------------ACACT-CACCCTTTATTAAT-TGCATGCA-TT--TT--------------------TGGCTGCCC-----------GGA-----A------------------G-----CCTTTTTTGGGTC-CTTCATGTTGTGGGC
droVir3	scaffold_12875:20596717-20596912 +		ACAG----------TCG----AC--GCAA------CA----------------------------------------C-GGCTAC-GGAATTCAGTTACATAC---TGCA----------ACGGCAGGTG------------------------AGTTGTT---------------------------GCCACATGTTGTAAAT--------AGT--------------------AGCAGCAGACC---------AAC----------------------T-AACCACCCACACACACA---------------------------------C------------AC-------ACACAC-----AC------------A---------------------------------------------------------CACACAC----ACACACA--------------------------------------------------CA---------------ATTAAT---TGCAT------------------------------------------------------GCA-TT--TTTGAGG-------------CC--------------------GGAA-----------------------GCATTTT------CGGT-CCTTCAATTTTGTGCTC
droGri2	scaffold_14853:7753430-7753682 -		ACAG----------CAGTTCGAG-------------GGGAAGAAGG----------------------------------CGAAA-AGG----GCAAAG----GGCACAAATATATATATATGATAAGTG------------------------TGTTGT---CACTTGGCAAATCATGCATAATATATCC-------------------A-------CA--C--ACATACATGT-----------------A----------------CA------CACACAAACACATACACACACA---------------------------------C------------AA-------ACACAC-----AC------------A----C-----------------------ACAC------A--------CACACACACACACACACACACA--------------CACACACAAA-------------------CA-----CA------------------------------------------------------------CACATTGT-TTAAGGATGG-TAT-TGCGTGCT-AC--TTCG-GGCGGGACCTCTTTGCA----GTC----------------A----------------------------------------------------TTAGAA
droWil2	scf2_1100000004521:6360211-6360387 +		ACGT----------TTG----AA--ACTG------CA----------------------------------------T-GG-----AGAATGCGGAAACAAAC---ACAA----------ACCATACACA------------------------CGTACTT---------------------------ATTACAC---------------A-------CA--C--ACATACATAC-----------------A----------------CA------CACACACACACACACACACACA---------------------------------C------------AC-------ACACAC-----AC------------A----C-----------------------ACAC------A--------CACACACACACACACACACACA--------------CACACACAAA-------------------CA-----CACAGACATGGACGGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACAC
dp5	4_group3:6693081-6693252 -		TGAA----------TTC----TT-TC---CCCAAC--------------------------------------GATGT-A-------------------------------------------------------------------------ACCA--------------------CACACGTCACCCC------------CTGCATGCAC---A--C--------ACA-----------------CACACA----------------CA------CACACACACACACACACACACA---------------------------------C------AC-------------ACACAC-----AC------------A----C-----------------------ACAC------------------ACACACACACACAC----------ACACACACACACACA-----------------------CACA---C----ACA---------------CCACAC---CACAC-CACACCTCATTCA---------------------------------T-TGTCTGCA-------------------------------------------------------------------------------------------------------------
droPer2	scaffold_18:907313-907481 +		TATA----------CCC----CT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------T----------ACACACA----------------CA------CACACAC----------ACACA----------------C-----------------AC------------------------------GCACACACATACACG---------------------------------------------------CACACCCACACATGC--------------------------------------------------TCT------TA---------------ACACTCCACTGCAC-CACCTTGCACCCA-----------------CTGCACCCACTTGCCAGC-CCCTCCT-TC--TC--------------------TTAGTACCCGACAGCCGCCT---------------------------------TTCTG--T---GC-TTCACAAAATCAGGC
droAna3	scaffold_13334:1099392-1099541 -		CAG-CAGCGGCAGT----CCCAG-------------ACTCCGGAGGCGGAGGG----------------------------------------------------------------------------------------------------------------------------------------CGAAGCGAAATAAAT--------GGC--------------------G----------GCACACA--CACAC--------------------TCTGACACACACACACACT---------------------------------C------------CG-------ACACAC-----AC------------A----C-----------------------ACTCTGACACA--------CACACACTCTGACACACACATA----TGCATAA--AAT---------------------------CG-----CG------------------------------------------------------------AA----------------------------------------------------------------------------------------------------------------------------------------CAT
droBip1	scf7180000396434:275004-275170 -		ATA-----------CAA----A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAAA--CACAC----------------------TGA------CACACA------------------CATATATATACAAACAC-AC------------ACATGCA------CACACTC---------------------------------------------------------------TCACACACACACAC----ACACACA--------------------------------------------------CA---------------ACGGAA---TACATGCACCTTGCACTTG-----------------------TGAATTGTCGCT-CTCTTGT-GA--TC-G------------------TTACCGCCGACCATCCG---------------------------------------------AT-CCTTCGTCCTTG-TCGC
droKik1	scf7180000302476:708697-708863 -		CGCT----------C--------------------CA----------------------------------------T-GGTGCC-TGCATCCAAACCGAAAC---TCCA----------ATTGCAGTT------------------------GTCA-----------------------------------CAC---------------AC---TCAC----AAATATAC---------------------A--TATACTCACACACACA------CACACACACACACACACACACA---------------------------------C------AC-------------ACACAC-----AC------------A----C-----------------------------------------------ACACACACACACACACA----CACACACACACACACA-----------------------CACA---C----ATA---------------TTCCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT
droFic1	scf7180000454096:438888-439073 -		GTTG----------CCA----AT--------------------------------------------------TGTTG-------------------------------------------------------------------------------------------------------------------------TTTTTGTGTGCTC---TCCG---------------------------GCACACA----------------CACACACTCACACAAACACAGACACAC----------------------------------------------------------A-----CACTCTC------------G-------------------------CACAC--AGTGTCA------------------TACATAT----------ATTTTC------A------CA--T-------------T---------GCCATT------TTCATTTCAATTCAT---TTCAT-TT----------ATTT-----------------------------------ATGCA-ATATTTTATGT-------------GC--------------------TCA---------------------T--TCATTTT------TCGC-CCGTTTTGGTTGTCGTC
droEle1	scf7180000491046:1233242-1233466 +		TTGT----------CAC----ACATGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--CAC--AAATAGACAAAC-----------ACACACG--CACAC----------------------TCA------C--ACACA----------------C--------ACACACAC-ACACACACACACAC-------ACACAC-----A--------------------T-----------TCTCTCGCACGG--AGGGATGTCCTTTTA----------TTC------GCA--------------CTCACACTGG-------------------CA-----CAGGCACATCCTTGTGCATTCA-TCA-TCAGCCACAT-CATCATTTATACA-----------------TTGTATTTGTCTGCCGTAGT-CGTTT--------------------------------------------------------------------------------TTGTT--GTTGTT-GTTGTTGTTGCTGGC
droRho1	scf7180000777200:244315-244556 +		GCAG----------CTG----ACATGCAA------CA----------------------------------------T-GCTAAC-AGCA-ACAGCAAC----AGCAGCG----------GCAGCAGCAG------------------------CTTATCA---------------------------GCCGTCTGTTAGGGCT--------AAC--------------------AGCAACATCCC---------CGC------------A------GCAACAACCCCGCAGCCACATCCCCGCAGCAACACCCAT--------ACTATCA-C------------CC-------A------------------------------------------------------------------------CCCACTCGCACACAGAT------------------------A-----------------------CTC-ACT------CA---------------TCGCAGCGCTGCAA-CA----------ATGCAAAAAGCAAACT------TTC------TCG-------------------CTG-------------CC----GGC----------------GTCGCT-----------------------GTTGCT----------GTCGTGTTGTTGCT
droBia1	scf7180000301141:1142-1324 -		GCCG----------CCA----GC--------------------------------------------------GCCAACAACATC-GGCCGCCAGCGCC-AAC---AGCA----------TCGGCCGCCGGCTCCGTTCTCACATCAGCAGTAGCCA-----------------------------------CAC---------------AC---ACAC---------------------------ACGCACA----------------CACACACGCACACAAACACGCACACACACA---------------------------------C------------AC-------ACACAC-----GC------------G---------------------------------CACACA--------CACACACACACACACACACACA----CACACAC--ACA---------------------------CA-----CA------------------------------------------------------------CA----------------------------------------------------------------------------------------------------------------------------------------CAC
droTak1	scf7180000415381:115288-115434 +		GCAGCTGGGTCATAACA----AC-------------AC-----ATTCCAACTGCTTAGTGGATACTTATCCTGGCCA-------------------------------------------------------------------------------------------------------------------------------------AC---A--CACAC--ACA-------------------CACACA----------------CA------CACACACACACACACACACACA---------------------------------C------AC-------------ACA---CACACAC---------------------------------------------------------------ACACACACACACACACACA----CACACAC--ACA---------------------------CA-----CA------------------------------------------------------------CA----------------------------------------------------------------------------------------------------------------------------------------CAC
droEug1	scf7180000409672:6510845-6511044 +		ACGG----------CCA----GA--AAAA------CA----------------------------------------C-TT-----GGAATACA--------------------------ACATTAATTA------------------------TTTATTGCCTACATTTCGGGGCAGGCATGAGATAATCAAACATTGCAATT--------ATC--------------------T----------GCACAGA--------------------------------CACAAACACACACA----------------CATA--TAGGCGAGCAC-GC------------ACATACA------CGC----------------A----CAT--------------------------------------------------GGCAACC----ACAGACA--------------------------------------------------CA---------------GTGCAT---TCCATGCACATTTCATGCA---------------------------------T-TT-----------------------------------------------------------------------------------------------------CCTTTGTACTGGGC
dm3	chr3L:21491666-21491848 +		CACA----------CAC----AC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA-----------------CACACA----------------CA------CACACACACACACACACACACA---------------------------------C------AC-------------ACACAC-----AC------------A----C-----------------------ACAC------------------ACACACACACACAC----------ACACACACACACACA-----------------------CACA---C----ACA---------------CCCCCC---TGCAC-CA----------AAA-----AGG-AATG------T---TCAAGAAAT-TTCATAAT-TT--GC--------------------TGCCTATCA-----------CGT-----A------------------A-----CTTCCCGTTGTTT-ATTTACACTATGTAC
droSim2	3r:7014290-7014465 +		GTTG----------TTA----TT--------------------------------------------------ACCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAAA--CACAC----------------------------A--CACACA------------------CATACAGACATAAGTGC-AC------------AT------------------------------A----CCGAACCGATCTAATCTCTCGCACGC--GCGCACCCACTGTCG----------CTCTCT--------------------C----------------------------------------TCT---------------TTCTTT------------------C-----------------TCTGT-TTTTCCCCAC-TATCCC-CCTCTCTT--TT--------------------GTGCCGCAT-----------CGG-----G------------------C-----CCTCT----------CTTTCGCTCCCCAT
droSec2	scaffold_1:7443532-7443750 +		CAG-----------CTG----ACATGCAA------CA----------------------------------------T-GCTAAC-AGC----AGCAAC----AGCAGCA----------ACAGCAGCAG------------------------CTTATCA---------------------------ACCGTCTGTTATGGCT--------AAC--------------------AGCGACATCCC---------CGC----------------------AGCAACACCCATACCAACA---------------------------------G------------CC-------A-----CCCACTC------------G-------------------------CACAC--AGATACT------------------------C----------------------------------------------------ACT------CG---------------CTGCGTCGCTGCAA-CA----------ATGCAAAAAGCAAACT------TTC------TCG-------------------CTG-------------CC----CGC----------------GTCGCA------------------G-----CTGGCGTCGTGTT-GCTGCTGCTGCTGTC
droYak3	3R:20114242-20114451 -		AGC-----------CAC----AC------------------------------------------------------------------------------AT---TGAA----------ATCTTAGTTA------------------------AATCTTT---------------------------GTTAGTTATTAT---------------TTA-----------------T----------GCACACACACACAC----------------------TCG------CTCACA------------------CATA-------AAACAC-AC------------AGATACA------CAT----------------A----CAA--------------------------------------------------CACACACAC--ACAC--A------------------CA--C-------------A---------TCCATC------TGCAGTTAAGTT-----TTGCAT-TA----------ATAT----------TT------TTA------GTA-------------------TTG-------------CA----AGC----------------ATTAAAAATAAAGAAATCTAAA--ACGTTTT------ATTG-ACAATTAAGATGCGCCC
droEre2	scaffold_4845:13548720-13548902 -		AAAG----------GCA----GC--------------------------------------------------AATAA-AGCAGCTGAAATTAAATTAGAGAA----CAA----------------------------------------------------------------------------------G-----------------GC---ACAG----AA---------------------ACACACG--CATAC----------------------TCA------C--GCACA----------------C--------ACACGCAC-ACACACGCACACAC-------ACGCAC-----AC------------ACACAC-----------------------------------------------ATGAGCACATGT----------ACATAC------A------TGGGTTCACTCAGAGAGG----------GA---------------------GGCA-------------------------------------------------------------------------------------------C--------------------GTG---------------------CGTACACTTT------GTGC-G---TAATTGTGTGCGT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

ACAG----------TCG----AC--GCAA------CA----------------------------------------C-GGCAAC-GGAATTCAGTTACATAC---TGCA----------ACGGCAGGTG------------------------AGTGCTT---------------------------GCCACACGTTGTAAAT--------AGT--------------------AG----------CACATA--TACGC----------------------------CCACACACA------------------CACACACACACCCGCAC-AC------------ACACACA------CACACCC------------G---------------------------------------------------CACACACACACACACCTG----TACATTC------A------CT--T-------------T---------CACACA---------------TCCTCG------------------C-----------------ACACT-CACCCTTTATTAAT-TGCATGCA-TT--TT--------------------TGGCTGCCC-----------GGA-----A------------------G-----CCTTTTTTGGGTC-CTTCATGTTGTGGGC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
............................................................................................................................................................................................................................................................A--TACGC----------------------------CCACACACA------------------CACAC..............................................................................................................................................................................................................................................................................................................................................................................................	20	6	0.17	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................ACACCCGCAC-AC------------ACACACA------C.....................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................ACACCC------------G---------------------------------------------------CACACACACACAC..................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0

droVir3

ACAG----------TCG----AC--GCAA------CA----------------------------------------C-GGCTAC-GGAATTCAGTTACATAC---TGCA----------ACGGCAGGTG------------------------AGTTGTT---------------------------GCCACATGTTGTAAAT--------AGT--------------------AGCAGCAGACC---------AAC----------------------T-AACCACCCACACACACA---------------------------------C------------AC-------ACACAC-----AC------------A---------------------------------------------------------CACACAC----ACACACA--------------------------------------------------CA---------------ATTAAT---TGCAT------------------------------------------------------GCA-TT--TTTGAGG-------------CC--------------------GGAA-----------------------GCATTTT------CGGT-CCTTCAATTTTGTGCTC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..........................................................................................................................................................................................................................................................................................AACCACCCACACACACA---------------------------------C------------AC-------ACACA.......................................................................................................................................................................................................................................................................................................................................................	25	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................ACCCACACACACA---------------------------------C------------AC-------ACA.........................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

ACAG----------CAGTTCGAG-------------GGGAAGAAGG----------------------------------CGAAA-AGG----GCAAAG----GGCACAAATATATATATATGATAAGTG------------------------TGTTGT---CACTTGGCAAATCATGCATAATATATCC-------------------A-------CA--C--ACATACATGT-----------------A----------------CA------CACACAAACACATACACACACA---------------------------------C------------AA-------ACACAC-----AC------------A----C-----------------------ACAC------A--------CACACACACACACACACACACA--------------CACACACAAA-------------------CA-----CA------------------------------------------------------------CACATTGT-TTAAGGATGG-TAT-TGCGTGCT-AC--TTCG-GGCGGGACCTCTTTGCA----GTC----------------A----------------------------------------------------TTAGAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
......................................................................................................................................................................................................................................................................................ACACAAACACATACACACA.....................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0

droWil2

ACGT----------TTG----AA--ACTG------CA----------------------------------------T-GG-----AGAATGCGGAAACAAAC---ACAA----------ACCATACACA------------------------CGTACTT---------------------------ATTACAC---------------A-------CA--C--ACATACATAC-----------------A----------------CA------CACACACACACACACACACACA---------------------------------C------------AC-------ACACAC-----AC------------A----C-----------------------ACAC------A--------CACACACACACACACACACACA--------------CACACACAAA-------------------CA-----CACAGACATGGACGGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACAC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
................G----AA--ACTG------CA----------------------------------------T-GG-----AGAATGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	6.00	6	0	1	2	3	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----CACAGACATGGACGGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------......	18	1	4.00	4	3	0	0	1	0
.....................AA--ACTG------CA----------------------------------------T-GG-----AGAATGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	2	0
...............TG----AA--ACTG------CA----------------------------------------T-GG-----AGAATGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	2	0
ACGT----------TTG----AA--ACTG------CA----------------------------------------T-GG-----A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	2	0
..............TTG----AA--ACTG------CA----------------------------------------T-GG-----AGAATGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	1	1	0
....................................A----------------------------------------T-GG-----AGAATGCGGAAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	2	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------------------CA-----CACAGACATGGACGGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A.....	22	1	1.00	1	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACAAA-------------------CA-----CACAGACATGGACG.............................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------------------CA-----CACAGACATGGACGGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAC..	25	1	1.00	1	1	0	0	0	0
....................................................................................................AAC---ACAA----------ACCATACACA------------------------CGTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.............................................................................T-GG-----AGAATGCGGAAACAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
...................................................................................................AAAC---ACAA----------ACCATACACA------------------------CGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
..GT----------TTG----AA--ACTG------CA----------------------------------------T-GG-----AGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------------------CA-----CACAGACATGGACGGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------......	22	1	1.00	1	0	0	1	0	0
..GT----------TTG----AA--ACTG------CA----------------------------------------T-GG-----AGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
..............TTG----AA--ACTG------CA----------------------------------------T-GG-----AGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
...................................CA----------------------------------------T-GG-----AGAATGCGGAAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------------CA-----CACAGACATGGACGGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A.....	21	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-----CACAGACATGGACGGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACAC	25	1	1.00	1	1	0	0	0	0
..........................................................................................................................CATACACA------------------------CGTACTT---------------------------ATTACAC---------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----CACAGACATGGACGGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A.....	19	1	1.00	1	0	0	0	0	1
..GT----------TTG----AA--ACTG------CA----------------------------------------T-GG-----AGAATGCGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
.............................................................................T-GG-----AGAATGCGGAAACAAAC---ACAA----------ACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
....................................A----------------------------------------T-GG-----AGAATGCGGAAACAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGACATGGACGGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA...	20	1	1.00	1	0	0	1	0	0
..........................................................................................................................CATACACA------------------------CGTACTT---------------------------ATTACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------------------CA-----CACAGACATGGACGGA...........................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
..GT----------TTG----AA--ACTG------CA----------------------------------------T-GG-----AGAATGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
....................................A----------------------------------------T-GG-----AGAATGCGGAAACAAAC---ACAA----------ACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
.CGT----------TTG----AA--ACTG------CA----------------------------------------T-GG-----AGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------------------CA-----CACAGACATGGACG.............................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-----CACAGACATGGACGGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A.....	20	1	1.00	1	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGGACGGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACAC	19	1	1.00	1	1	0	0	0	0
....................................................................................................AAC---ACAA----------ACCATACACA------------------------CGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACACAAA-------------------CA-----CACAGACATGGACG.............................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0
.........................................................................................ATGCGGAAACAAAC---ACAA----------ACCATA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
...................................CA----------------------------------------T-GG-----AGAATGCGGAAACAAAC---A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
...............TG----AA--ACTG------CA----------------------------------------T-GG-----AGAATGCGGAAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
.............................................................................T-GG-----AGAATGCGGAAACAAAC---AC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAA-------------------CA-----CACAGACATGGAC..............................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----CACAGACATGGACGGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAC..	22	1	1.00	1	1	0	0	0	0
............................................................................................................................TACACA------------------------CGTACTT---------------------------ATTACAC---------------A-------CA--C--ACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
.................................................................................................................................................................................................................................ACATACATAC-----------------A----------------CA------CACAC....................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0

dp5

TGAA----------TTC----TT-TC---CCCAAC--------------------------------------GATGT-A-------------------------------------------------------------------------ACCA--------------------CACACGTCACCCC------------CTGCATGCAC---A--C--------ACA-----------------CACACA----------------CA------CACACACACACACACACACACA---------------------------------C------AC-------------ACACAC-----AC------------A----C-----------------------ACAC------------------ACACACACACACAC----------ACACACACACACACA-----------------------CACA---C----ACA---------------CCACAC---CACAC-CACACCTCATTCA---------------------------------T-TGTCTGCA-------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACA---C----ACA---------------CCACAC---CACA.......................................................................................................................................................................	18	15	0.07	1	0	1	0	0	0	0	0	0	0	0

droPer2

TATA----------CCC----CT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------T----------ACACACA----------------CA------CACACAC----------ACACA----------------C-----------------AC------------------------------GCACACACATACACG---------------------------------------------------CACACCCACACATGC--------------------------------------------------TCT------TA---------------ACACTCCACTGCAC-CACCTTGCACCCA-----------------CTGCACCCACTTGCCAGC-CCCTCCT-TC--TC--------------------TTAGTACCCGACAGCCGCCT---------------------------------TTCTG--T---GC-TTCACAAAATCAGGC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droAna3

CAG-CAGCGGCAGT----CCCAG-------------ACTCCGGAGGCGGAGGG----------------------------------------------------------------------------------------------------------------------------------------CGAAGCGAAATAAAT--------GGC--------------------G----------GCACACA--CACAC--------------------TCTGACACACACACACACT---------------------------------C------------CG-------ACACAC-----AC------------A----C-----------------------ACTCTGACACA--------CACACACTCTGACACACACATA----TGCATAA--AAT---------------------------CG-----CG------------------------------------------------------------AA----------------------------------------------------------------------------------------------------------------------------------------CAT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

ATA-----------CAA----A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAAA--CACAC----------------------TGA------CACACA------------------CATATATATACAAACAC-AC------------ACATGCA------CACACTC---------------------------------------------------------------TCACACACACACAC----ACACACA--------------------------------------------------CA---------------ACGGAA---TACATGCACCTTGCACTTG-----------------------TGAATTGTCGCT-CTCTTGT-GA--TC-G------------------TTACCGCCGACCATCCG---------------------------------------------AT-CCTTCGTCCTTG-TCGC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CGCT----------C--------------------CA----------------------------------------T-GGTGCC-TGCATCCAAACCGAAAC---TCCA----------ATTGCAGTT------------------------GTCA-----------------------------------CAC---------------AC---TCAC----AAATATAC---------------------A--TATACTCACACACACA------CACACACACACACACACACACA---------------------------------C------AC-------------ACACAC-----AC------------A----C-----------------------------------------------ACACACACACACACACA----CACACACACACACACA-----------------------CACA---C----ATA---------------TTCCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GTTG----------CCA----AT--------------------------------------------------TGTTG-------------------------------------------------------------------------------------------------------------------------TTTTTGTGTGCTC---TCCG---------------------------GCACACA----------------CACACACTCACACAAACACAGACACAC----------------------------------------------------------A-----CACTCTC------------G-------------------------CACAC--AGTGTCA------------------TACATAT----------ATTTTC------A------CA--T-------------T---------GCCATT------TTCATTTCAATTCAT---TTCAT-TT----------ATTT-----------------------------------ATGCA-ATATTTTATGT-------------GC--------------------TCA---------------------T--TCATTTT------TCGC-CCGTTTTGGTTGTCGTC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TTGT----------CAC----ACATGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--CAC--AAATAGACAAAC-----------ACACACG--CACAC----------------------TCA------C--ACACA----------------C--------ACACACAC-ACACACACACACAC-------ACACAC-----A--------------------T-----------TCTCTCGCACGG--AGGGATGTCCTTTTA----------TTC------GCA--------------CTCACACTGG-------------------CA-----CAGGCACATCCTTGTGCATTCA-TCA-TCAGCCACAT-CATCATTTATACA-----------------TTGTATTTGTCTGCCGTAGT-CGTTT--------------------------------------------------------------------------------TTGTT--GTTGTT-GTTGTTGTTGCTGGC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GCAG----------CTG----ACATGCAA------CA----------------------------------------T-GCTAAC-AGCA-ACAGCAAC----AGCAGCG----------GCAGCAGCAG------------------------CTTATCA---------------------------GCCGTCTGTTAGGGCT--------AAC--------------------AGCAACATCCC---------CGC------------A------GCAACAACCCCGCAGCCACATCCCCGCAGCAACACCCAT--------ACTATCA-C------------CC-------A------------------------------------------------------------------------CCCACTCGCACACAGAT------------------------A-----------------------CTC-ACT------CA---------------TCGCAGCGCTGCAA-CA----------ATGCAAAAAGCAAACT------TTC------TCG-------------------CTG-------------CC----GGC----------------GTCGCT-----------------------GTTGCT----------GTCGTGTTGTTGCT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCCG----------CCA----GC--------------------------------------------------GCCAACAACATC-GGCCGCCAGCGCC-AAC---AGCA----------TCGGCCGCCGGCTCCGTTCTCACATCAGCAGTAGCCA-----------------------------------CAC---------------AC---ACAC---------------------------ACGCACA----------------CACACACGCACACAAACACGCACACACACA---------------------------------C------------AC-------ACACAC-----GC------------G---------------------------------CACACA--------CACACACACACACACACACACA----CACACAC--ACA---------------------------CA-----CA------------------------------------------------------------CA----------------------------------------------------------------------------------------------------------------------------------------CAC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GCAGCTGGGTCATAACA----AC-------------AC-----ATTCCAACTGCTTAGTGGATACTTATCCTGGCCA-------------------------------------------------------------------------------------------------------------------------------------AC---A--CACAC--ACA-------------------CACACA----------------CA------CACACACACACACACACACACA---------------------------------C------AC-------------ACA---CACACAC---------------------------------------------------------------ACACACACACACACACACA----CACACAC--ACA---------------------------CA-----CA------------------------------------------------------------CA----------------------------------------------------------------------------------------------------------------------------------------CAC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ACGG----------CCA----GA--AAAA------CA----------------------------------------C-TT-----GGAATACA--------------------------ACATTAATTA------------------------TTTATTGCCTACATTTCGGGGCAGGCATGAGATAATCAAACATTGCAATT--------ATC--------------------T----------GCACAGA--------------------------------CACAAACACACACA----------------CATA--TAGGCGAGCAC-GC------------ACATACA------CGC----------------A----CAT--------------------------------------------------GGCAACC----ACAGACA--------------------------------------------------CA---------------GTGCAT---TCCATGCACATTTCATGCA---------------------------------T-TT-----------------------------------------------------------------------------------------------------CCTTTGTACTGGGC	Size	Hit Count	Total Norm	Total
No Reads

dm3

CACA----------CAC----AC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA-----------------CACACA----------------CA------CACACACACACACACACACACA---------------------------------C------AC-------------ACACAC-----AC------------A----C-----------------------ACAC------------------ACACACACACACAC----------ACACACACACACACA-----------------------CACA---C----ACA---------------CCCCCC---TGCAC-CA----------AAA-----AGG-AATG------T---TCAAGAAAT-TTCATAAT-TT--GC--------------------TGCCTATCA-----------CGT-----A------------------A-----CTTCCCGTTGTTT-ATTTACACTATGTAC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----AGG-AATG------T---TCAAGAAAT-.....................................................................................................................	18	6	3.17	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	4	7	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCA-----------CGT-----A------------------A-----CTTCCCGTTGTTT-ATT............	26	3	1.67	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC-CA----------AAA-----AGG-AATG------T---TCAAGAAAT-T....................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..........................................................................................................................................................................................................................................................................................................A---------------------------------C------AC-------------ACACAC-----AC------------A----C-----------------------ACAC------------------ACACAC..........................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................AC-----AC------------A----C-----------------------ACAC------------------ACACACACACACAC----------........................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................ACACACA---------------------------------C------AC-------------ACACAC-----AC------------A----C-----------------------ACAC------------------................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACACACACAC----------ACACACACACAC............................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACACAC----------ACACACACACACACA-----------------------C.................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................AC------------A----C-----------------------ACAC------------------ACACACACACACAC----------AC......................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ACACACACACACAC----------ACACACACAC..............................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................ACACACACACA---------------------------------C------AC-------------ACACAC-----AC------------A----C-----------------------......................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GTTG----------TTA----TT--------------------------------------------------ACCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAAA--CACAC----------------------------A--CACACA------------------CATACAGACATAAGTGC-AC------------AT------------------------------A----CCGAACCGATCTAATCTCTCGCACGC--GCGCACCCACTGTCG----------CTCTCT--------------------C----------------------------------------TCT---------------TTCTTT------------------C-----------------TCTGT-TTTTCCCCAC-TATCCC-CCTCTCTT--TT--------------------GTGCCGCAT-----------CGG-----G------------------C-----CCTCT----------CTTTCGCTCCCCAT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..................................................................................................................................................................................................................................................................................................................................................................................................................TCGCACGC--GCGCACCCAC........................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0

droSec2

CAG-----------CTG----ACATGCAA------CA----------------------------------------T-GCTAAC-AGC----AGCAAC----AGCAGCA----------ACAGCAGCAG------------------------CTTATCA---------------------------ACCGTCTGTTATGGCT--------AAC--------------------AGCGACATCCC---------CGC----------------------AGCAACACCCATACCAACA---------------------------------G------------CC-------A-----CCCACTC------------G-------------------------CACAC--AGATACT------------------------C----------------------------------------------------ACT------CG---------------CTGCGTCGCTGCAA-CA----------ATGCAAAAAGCAAACT------TTC------TCG-------------------CTG-------------CC----CGC----------------GTCGCA------------------G-----CTGGCGTCGTGTT-GCTGCTGCTGCTGTC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCGTGTT-GCTGCTGCTGCT...	21	1	1.00	1	0	0	1	0
......................................................................................AGC----AGCAAC----AGCAGCA----------ACAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	2	0
......................................................................................AGC----AGCAAC----AGCAGCA----------ACAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0
................................................................................................AAC----AGCAGCA----------ACAGCAGCAG------------------------C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0
..................................................................................AAC-AGC----AGCAAC----AGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0

droYak3

AGC-----------CAC----AC------------------------------------------------------------------------------AT---TGAA----------ATCTTAGTTA------------------------AATCTTT---------------------------GTTAGTTATTAT---------------TTA-----------------T----------GCACACACACACAC----------------------TCG------CTCACA------------------CATA-------AAACAC-AC------------AGATACA------CAT----------------A----CAA--------------------------------------------------CACACACAC--ACAC--A------------------CA--C-------------A---------TCCATC------TGCAGTTAAGTT-----TTGCAT-TA----------ATAT----------TT------TTA------GTA-------------------TTG-------------CA----AGC----------------ATTAAAAATAAAGAAATCTAAA--ACGTTTT------ATTG-ACAATTAAGATGCGCCC

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

AAAG----------GCA----GC--------------------------------------------------AATAA-AGCAGCTGAAATTAAATTAGAGAA----CAA----------------------------------------------------------------------------------G-----------------GC---ACAG----AA---------------------ACACACG--CATAC----------------------TCA------C--GCACA----------------C--------ACACGCAC-ACACACGCACACAC-------ACGCAC-----AC------------ACACAC-----------------------------------------------ATGAGCACATGT----------ACATAC------A------TGGGTTCACTCAGAGAGG----------GA---------------------GGCA-------------------------------------------------------------------------------------------C--------------------GTG---------------------CGTACACTTT------GTGC-G---TAATTGTGTGCGT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dmo_983

scaffold_6496:5522480-5522630 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads