ID:

dmo_957

 Coordinate:

scaffold_6496:3877222-3877302 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-24.0

Flybase annnotation

CDS [Dmoj\GI19556-cds]; exon [dmoj_GLEANR_4481:2]; exon [dmoj_GLEANR_4481:3]; CDS [Dmoj\GI19556-cds]; intron [Dmoj\GI19556-in]

Repeatable elements

NameClassFamilyStrand
(CCG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------##################################################
CCATCTGCTGCAGCACCACGGCGGCGGGTGCCGCCGGTGCCCCAACAGCGGTGGCAACGGCAGCAGCGCCGGTGGCGGCAACGGCTGCCAATGCGGCAGCAACTGTTGCCGATGCCCAGCAACAGACGCAGACAATTCAGATACAGGCGGGTCCGCCGGGCTTGATCTATGCCAATGGCGT
******************************************************.....((((..((((((.(((((((....)))))))...)))).))..)))).************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 M060
embryo
 V049
head
 V056
head
......................................................CAACGGCAGCAGCGCCGGTGGCGGC...................................................................................................... 25 0 1 2.00 2 1 1 0 0 0
...........................................AACAGCGGTGGCAACGGCAGC..................................................................................................................... 21 0 1 2.00 2 0 2 0 0 0
....................................................GGCAACGGCAGCAGCGCCGGTGGCGG....................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
......................................GCCCCAACAGCGGTGGCAACGGCAG...................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
CCATCTGCTGCAGCACCACGGCGGC............................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0
......................................GCCCCAACAGCGGTGGCAACGGCAGCAG................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
...................................GGTGCCCCAACAGCGGTGGCAACGG......................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
..............................................................GCAGCGCCGGTGGCGGCAACGGCTGCC............................................................................................ 27 0 1 1.00 1 0 0 1 0 0
..............................................................................CAACGGCTGCCAATGCGG..................................................................................... 18 0 1 1.00 1 1 0 0 0 0
.....................................................................CGGTGGCGGCAACGGCTG.............................................................................................. 18 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................CGCCGGGCTTGATCTATGCCAATGGC.. 26 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................AGATACAGGCGGGTCCGCCGGGCT................... 24 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................CAGATACAGGCGGGTCCCCCGGGCTTC................. 27 2 1 1.00 1 0 0 0 0 1
........................................................................................CAATGCGGCAGCAACTGTT.......................................................................... 19 0 1 1.00 1 0 0 0 1 0
................................................................................................................................................................CTTGATCTATGCCAATGGCGT 21 0 1 1.00 1 1 0 0 0 0
.......................................................AACGGCAGCAGCGCCGGTGGCGGCA..................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
.....................................TGCCCCAACAGCGGTGGCAACGGCA....................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
......................................................CAACGGCAGCAGCGCCGGTGGC......................................................................................................... 22 0 1 1.00 1 0 1 0 0 0
.....................................TGCCCCAACAGCGGTGGCAACGGCAGC..................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
.................................................................................................................GCCCAGCAACAGACGCAGA................................................. 19 0 1 1.00 1 0 1 0 0 0
....................................................GGCAACGGCAGCAGCGCCGGTGGCG........................................................................................................ 25 0 1 1.00 1 1 0 0 0 0
.......................................................................................................................................................TCCGCCGGGCTTGATCTATGCC........ 22 0 1 1.00 1 0 0 1 0 0
.......................................................AACGGCAGCAGCGCCGGTGGCGG....................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
..............................................................GTAGCGCCGGTGGCGGCAACGGCTGC............................................................................................. 26 1 1 1.00 1 0 0 1 0 0
......................................................CAACGGCAGCAGCGCCGGTGG.......................................................................................................... 21 0 1 1.00 1 0 1 0 0 0
.............CACCACGGCGGCGGGTGCCGCCGG................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0
.............................................CAGCGGTGGCAACGGCAGC..................................................................................................................... 19 0 2 0.50 1 1 0 0 0 0
...........................................AACACCGGTGGCAAAGGCGGC..................................................................................................................... 21 3 7 0.14 1 0 1 0 0 0
............................................................................................................................GACGCAGACAATTCAGGTCT..................................... 20 3 9 0.11 1 1 0 0 0 0
....................................................................................CTGCCGATGCGGGATCAAC.............................................................................. 19 3 19 0.05 1 0 1 0 0 0
......GCTGCAGAACCATGGCGGA............................................................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0
...........................................AACACCGGTGGCGACGGCGGC..................................................................................................................... 21 3 20 0.05 1 0 0 0 1 0

Anti-sense strand reads

GGTAGACGACGTCGTGGTGCCGCCGCCCACGGCGGCCACGGGGTTGTCGCCACCGTTGCCGTCGTCGCGGCCACCGCCGTTGCCGACGGTTACGCCGTCGTTGACAACGGCTACGGGTCGTTGTCTGCGTCTGTTAAGTCTATGTCCGCCCAGGCGGCCCGAACTAGATACGGTTACCGCA
**************************************************************************.....((((..((((((.(((((((....)))))))...)))).))..)))).****************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6496:3877172-3877352 - dmo_957 CCATC-TG-CTGCAGCAC---CA------------------------------------------------------CGG------------CG------------------------------GC---------------------GG-----------------------GTGC----CGCCGGTGCCCCAACA---G---------------------------------------------------------------------CGGTGGCAACGGCA-----GCAGCGCC-------------------------------------------GGTG----------------------------------------------------------------------------GCGGCAACGGC----TGCC-----------------AATGCGGCAGCAACTGTTG-----------------------------------------------------------------CCGATGCC-------------------CAG--------------------------------CAACAGA-----------------------------CGCAGACAATTC--------------------AG-------AT--AC-------------AGGCGGGTCCGCCGGGCTTG----ATCTAT--GCCAATGGCGT
droVir3 scaffold_12875:849602-849788 - dvi_4787 CAATT-TG-CTGCAGCAA---CA------------------------------------------------------C---------------------------------------AACAGCAGCAGCAGCAGCAGCAGC---GG-----------------------------------------------------------------------------------------------CGGCAGCA-GC------AGCAGCGG---CAGCA---------TCGCC--------A--------------------------------------------------------------------------------------------------------------------------GCGGCAACGGC----AGCG-----------------AACA-------------------------------------------------------------------------------------------------------CAAC-AGCAACTGTTGCTGTTGATGCA--------CAGGTGGCC--------CAGC-------------------CGCAGACCATAC--------------------AG-------AT--AC-------------AGGCGGGTCCGCCGGGCTTG----ATCTAT--GCCAATGGCGT
droGri2 scaffold_15245:10104951-10105131 + TTTGC-TG----CACCAC---AA------------------------------------------------------C---------------------------------------AACAACGGCAGGAGCAGCAGCAGC---TG-----------------------------------------------------------------------------------------------TCGCTGGC-AC---AGCAGCAG------CAGCA---------ACAAC--------AGCTGC---AGTTGTCGCCGGCACAGC--GGCAACAGCCGAGCAG------------------------------------------------------------CA--------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCAGCAGC-AGCAAC-------------------------------------------------------------------AGACCATAC--------------------AG-------AT--TC-------------AAGCTGGTCCGCCTGGACTG----ATCTAT--GCCAATGGCGT
droWil2 scf2_1100000014732:552-735 - GCAGC-GG-GTACAGCAG---TGG---------------------------------------C--------------------------AGCGGGTGCAGCGGCGGTGGGTACAG---------------------------------------------------------------------------------------------------------------------------------------------------------CAGTGGCAGCGGGT-----GCAGCGGC-------------------------------------------GGTA----------------------------------------------------------------------------GCGGCGGCAGGTACCGTAATG---------------GATGCGACAGCAGCGGCGGCGGGTACAGCGGTGGCAGCGGCGGTGGGTACA-------------------------------------------------GCAGTGGCAGC-GGCGGCGGGTA-----------------------------------------------------------------------------------------------------------------------------------------C-----AGCAGT--GGCAGCGGCGG
dp5 XL_group1e:638630-638786 + CCATC-AG-CATCAGCAA---CAG---------------------------------------C--------------------------A---------------------------------GCAGCAGC------------AGC---------------------------------AG---------------------------------------------------------------------C------AGCAGCAACAGCAGCA---------ACACC--------AGCAG-------------------------------------------------------------------------------------CAACAGCAGCAGCAGCAACA----------------------G-------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGC-AGCGACTGATGCCG--------CAACATTATCA-----------------------------------------GTTCGGGA---------------------------------------------CGGAGGGAGGCATTCCGGGCTTC------------AGC--GAGCGT
droPer2 scaffold_14:501926-502109 + CAA------------CAGCAG------------------------------------------CA--------------------------------------------------------------GCAACAGCAGCA------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGCGG---CGCAACAGCAGCAACAGCGCGTGCAGCAGCAGCAGCGCGAGAACCTCGCTTCGGCAATGGC----CGCCGG---------------AATGCGGCATCATCCGCTG--------------------------------------------------------------------------------------------------CTGGCGCCG--------CCA------------------------------------GAGGCGA--TGCATGCC----------------------------AATCCCT--TC-C------------AGCTG-----CTGCGCATG-----CCCCT--GCCGCCGGCGC
droAna3 scaffold_13340:4278738-4278929 - TCATC-TGAGCTCGGCTG---CAA---------------------------------------TACCTTCCT-----CGTCT------TCGGCTGGATCGCTGTCATCTGCCTCATCGACGCCAACAGCAACA------------------GC---------------------------AA---------------------------------------------------------------------C------TGCAACAGCAACAGCC---------ACGGC--------GAATGCAACGGCAA---------CTG--CAACAGTCTCC---------------------------------------------------------------CAGCAACA-----------------------------------------------------------------------------------------------------------------------------------------------------TCAGCAGCAAC-AGCAACAATCG-------------------------------------------------------------------------------------------------------------------------------CCGCCAAATTTA----ATCGAT--ATCAGCGAAGT
droBip1 scf7180000395895:27139-27326 + CAG------------CAACAG------------------------------------------CAGCGGCAGTGC-C-------------G---------------------------------GC------------------GGCAGCAAC---------------------------AG---------------------------------------------------------------------C------AGCAGCAGCAACAAT---------------GCAGCCGTGGCAGCGGC--------------------GG-----------------------------------------------------------------------CGGCATCA---GCG-------GCAGCAGCAGC----GGCG-----------------GGCA--TCAA---------------CAACAGT-------------------TA------------------------TCTGCCGCCGT---------------------------------CGCCG--------CAGCATCACCAGCAGC------------------------------------------------------------------ATCGTTTAT--TC-C------------AGCAG---------GCGCCCTAC-AGTAT--GCCCACGGCGT
droKik1 scf7180000302351:881083-881271 - CCATC-AT-CCGCATCAT---CATC------TGCTGGCAGCCTCCGCCGCCGCTGCACAGCAGCA-----------------------------------------------------------GCAGCAACGTCA-----------------------------------------GGTGG------CCGCCGCCGCTGTGGCCGCAGCAGCCGCCCAACAGCAGGTCGCCGCCCATCATCAGC---A-GCAGC---------------------------------------------------------------------------------------------------------------------------AGCAGGCGCAACAGCAGCAGGCGCAGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------G-CAGCAGC-------------------------------------------------------------------AGG-------------------------------------------------------------------------------CCATC--TCCGCCGTTGC
droFic1 scf7180000453839:1524215-1524392 - CAA------------CAGCAG------------------------------------------TAGCAGCAACAT-C-------------A---------------------------------GC------------------CGTGGCAGC---------------------------AG---------------------------------------------------------------------C------AGCAACAGCAACATCG---------------------------------------------------------------------------------------------------------------------GCGGCAGCAGCAACATCGGAA-------GCGGCAGCAAC----GCGAAG---------------GATACGGCACAAGCGTCGCTCGTCGCAACGACGGC-----------------------------------------------------------------------GCGGC-AACAA--------------------------CA------------------------------------------------------------------------------AC--GC-------------GGTGCTGTCATCTGGGATTG-----GGATT--GGCATCGGCAT
droEle1 scf7180000491278:1459607-1459774 - CGATA-TG-GTGGACTAC---ACA-----------------------------------------------------CAGCTACAGCCGCAGCG------------------------------------------------------------------------------------------ATTGCTCCTGCA---G---------------------------------------------------------------------CAGCAGCAGCAGCA-----GCAA----------------------------------------------CAGCAACA----------------------------------------------------------------------------GCAGCAGC----AACATGCCCATGCGGCGGCAG---------------------------------------------------CAGTTGTTGCCCAGCAGCAGCAGCAAC------TCGCCAACCAGCAGCAACACCCGCAAC-AGCAA--------------------------CA----------------------------------------------------------------------------------------------------------------------------------------GCA-
droRho1 scf7180000777200:277323-277504 - CAA------------CAGCAG------------------------------------------CAGCAGCAACAG-C-------------A---------------------------------GC------------------AGCAGCAGC---------------------------AA---------------------------------------------------------------------C------TGCAGCAGCAACAGCA---------GCAAC--------AACTGCAACAGCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCAGC-AGCAACAGATGCTGCAGATGCA--------CCAGCGGCT-----GTCCGGCGGTGCTGGCGCTGGA--GCTGTGGGCACCTT--------------------GG---------------------------GAAGGGTCCGCATCGTGGG----GTCCAT--GCCCAA--GGC
droBia1 scf7180000302075:2747187-2747384 - CCAGC-TG-CCGGG-CAC---CT-------------------------------------------------------GG------------CA------------------------------GA---------------------GT-----------------------GTGC----CGCCCCAGCCCCA--------------------------------------------------GCTGGCCAG---TGCAGCAG---CCGCCACC---------GCG------------CCGC---AGATC----------------------------------------------------------------------------------------ACACAGGGCGTGG--------------GCAGC----GCACTGCCAC--AGGCGGCCG---------------------------------------------------GAGTGGTTG------------------------CCTATCCG----------------------------ATG-----------CAGCAGTTCC-----------------------------------------AGGTCAGTC---------------------------------------------CACAGGTGAGTTGCCCAGGCTTTCGTT-GA--TAATCATATGGCGG
droTak1 scf7180000415191:84897-85090 - CCATCCAG-ATGCAGCAG---CAG---------------------------------------G--CGGCAGT-G-C-------------A---------------------------------GG------------------CGCAGCAGCAACAGCAGCAGCAACAAGTCTCCCAGCAG------CAG--------------------------------CAGGTGAACGC---------------------------------------------------------------CCAGCAACAGCAAGCGGTGGCGCAGC--AGCAGCA-----------------------------G-------------------------------------------------------------------------------------------------------------GCGGTGGCGCAGGCCCAGCAGCAGCAGAGGGAGCA-------------------------------------------------GC----------AACAG--------------------------------------------------------------------------------------------------------------------------------CAGGTCGCCCAGGCTCA-----GGCGC--AGCAGCAGCAG
droEug1 scf7180000409711:2448366-2448564 + CCATC-AT-CCGCATCAC---CATCCGGCCCTATTGGCGGCCACCGCCGCCGCCGCCCAACAACA-----------------------------------------------------------GCAGCAACGCCA-----------------------------------------ACTGG------CCGCCGCCGCCGTGGCCA-----------------------------------------------------------------------------------------------------------------CAG--CAGCAGTCGCCCAACAGCAGCAGCAACAGCAGCAGCAGGCCGTTGTC---------------CAACAGCAGCAGCAGCAA--------------------------------------------------------------------------------------------------------------------------------GTTGTTGCCGCCGCC---------------CAGC-A----------------------------------------------------------------------------------------------------------------------------------------------------------GCAAC--ATCAACAGCAA
dm3 chr2L:16484446-16484630 - CCATGTTG-ATGCATCAC---CA-----------------------------------------------------------------------------------------------------GCAGCAGCAGCA-----------------------------------------GGCAG------CCGCAGCAGCGGCAGCCGCAGCA-------------------------------------------------------------------------------------------------------------------------GCCCAGCAGCAACA----------------------------------------------------------------------------GCAGCAGC----ACAATG---------------GACGCGACGGT-----------------------------------------------------------------------------------------------------AGCAAC-------------------------------------------------------------------AGTTCGCGTGGAGCCAACGAGGATCGTCCAA-------ATGGACGGAGCTCGCACACAGG-------ACGAGGATCCAGTT-GC--TCACCGGCC--AGT
droSim2 3l:3300428-3300611 - CCACC-TG-TTGCTGCTG---CC-----------------------------------------------------------------CCAGCGGAATCAGCACCTGCACCTGCAACAACACCAGCAGCAACAGCAGCACCTGCAG------------------------------------------C--------------------------------------------------AGCAGC---A-ACAGC---------------------------------------------------------------------------------------------------------------------------AGCAGCAGCATCTGCAGCAGCAGCAACA--------------------------------------------------------------------------------------------------------------------------------------------------------------C-CAG--------------------------------CAACATGCGCGACTGGCGACGACGACGCAGGC----------------GACGTCCGTTGGCAGC---------------------------------------------------G----A-CCAC--ACCGAT--GGC
droSec2 scaffold_2:3396670-3396853 - CCACC-TG-TTGCTGCTG---CC-----------------------------------------------------------------CCAGCGGAATCAGCACCTGCACCTGCAACAACACCAGCAGCAACAGCAACACCTGCAG------------------------------------------C--------------------------------------------------AGCAAC---A-ACAGC---------------------------------------------------------------------------------------------------------------------------AGCAGCAGCATCTGCAGCAGCAGCAACA--------------------------------------------------------------------------------------------------------------------------------------------------------------C-CAG--------------------------------CAACATGCGCGACTGGCGACGACGACGCAGGC----------------GACGTCCGTTGGAAGC---------------------------------------------------G----A-CCAC--ACCGAT--GGC
droYak3 2R:9421490-9421652 + CCAGC-GG-CAGCAGCAG---CAT---------------------------------------C--------------------------A---------------------------------GC------------------GGCAGCGCC---------------------------AG---------------------------------------------------------------------T------TTCAGCAGCAACAGCG---------GTGCC--------AGCGGCAGCAGCAGCCAGACGCACAGCACGGCCGTC-----------------------------A---GC-----------AGTGCCACAGATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAACAA---------------------------------CAACGGC------------------------------------------------------------------AATCACAAT--CC-GAGCT----TACAA---------C-------------TGAAT--GGTAATGGTGG
droEre2 scaffold_4690:14126251-14126417 + CCAAGTGG-CGGCAGCAG---CAG---------------------------------------CAGCGGCAAT-GCG-------------G------------C-----CTTGCTGCAACG-CAGCAGCAACAA--------------------------------------CCTCCAGCAG------CTGCAACAACAGCAGCTGCAGCA-----------------------------ACAGCAGCA-GC------AGCAGCAG---------------------------------------------------------------------------------------------------------------------------------------CA--------------------------------------------------------------------------------------------------------------------------------------------------------ACATTGGCAA-------CTGCAGCTG--------CAG------------------------------------CAGGCG---------------GACGAGCGATTGTTGC-----------------------------------------------------------------GCAAAATCGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
CCATC-TG-CTGCAGCAC---CA------------------------------------------------------CGG------------CG------------------------------GC---------------------GG-----------------------GTGC----CGCCGGTGCCCCAACA---G---------------------------------------------------------------------CGGTGGCAACGGCA-----GCAGCGCC-------------------------------------------GGTG----------------------------------------------------------------------------GCGGCAACGGC----TGCC-----------------AATGCGGCAGCAACTGTTG-----------------------------------------------------------------CCGATGCC-------------------CAG--------------------------------CAACAGA-----------------------------CGCAGACAATTC--------------------AG-------AT--AC-------------AGGCGGGTCCGCCGGGCTTG----ATCTAT--GCCAATGGCGTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................................................................................................................................................................CAACGGCA-----GCAGCGCC-------------------------------------------GGTG----------------------------------------------------------------------------GCGGC............................................................................................................................................................................................................................................................................................................................2512.002100001
................................................................................................................................................................................................AACA---G---------------------------------------------------------------------CGGTGGCAACGGCA-----GC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000002
.................................................................................................................................................................................................................................................................................GGCAACGGCA-----GCAGCGCC-------------------------------------------GGTG----------------------------------------------------------------------------GCGG.............................................................................................................................................................................................................................................................................................................................2611.001100000
...........................................................................................................................................................................................GCCCCAACA---G---------------------------------------------------------------------CGGTGGCAACGGCA-----G...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
CCATC-TG-CTGCAGCAC---CA------------------------------------------------------CGG------------CG------------------------------GC---------------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
...........................................................................................................................................................................................GCCCCAACA---G---------------------------------------------------------------------CGGTGGCAACGGCA-----GCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
........................................................................................................................................................................................GGTGCCCCAACA---G---------------------------------------------------------------------CGGTGGCAACGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
................................................................................................................................................................................................................................................................................................GCAGCGCC-------------------------------------------GGTG----------------------------------------------------------------------------GCGGCAACGGC----TGCC-----------------.............................................................................................................................................................................................................................................................................................2711.001000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGGC----TGCC-----------------AATGCGG......................................................................................................................................................................................................................................................................................1811.001100000
.......................................................................................................................................................................................................................................................................................................C-------------------------------------------GGTG----------------------------------------------------------------------------GCGGCAACGGC----TG................................................................................................................................................................................................................................................................................................................1811.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGGGCTTG----ATCTAT--GCCAATGGC..2611.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-------AT--AC-------------AGGCGGGTCCGCCGGGCT.........................2411.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----------------AATGCGGCAGCAACTGTT...........................................................................................................................................................................................................................................................................1911.001001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTG----ATCTAT--GCCAATGGCGT2111.001100000
....................................................................................................................................................................................................................................................................................AACGGCA-----GCAGCGCC-------------------------------------------GGTG----------------------------------------------------------------------------GCGGCA...........................................................................................................................................................................................................................................................................................................................2511.001100000
..........................................................................................................................................................................................TGCCCCAACA---G---------------------------------------------------------------------CGGTGGCAACGGCA-----....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
...................................................................................................................................................................................................................................................................................CAACGGCA-----GCAGCGCC-------------------------------------------GGTG----------------------------------------------------------------------------GC...............................................................................................................................................................................................................................................................................................................................2211.001000001
..........................................................................................................................................................................................TGCCCCAACA---G---------------------------------------------------------------------CGGTGGCAACGGCA-----GC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCC-------------------CAG--------------------------------CAACAGA-----------------------------CGCAGA.................................................................................................1911.001000001
.................................................................................................................................................................................................................................................................................GGCAACGGCA-----GCAGCGCC-------------------------------------------GGTG----------------------------------------------------------------------------GCG..............................................................................................................................................................................................................................................................................................................................2511.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGCCGGGCTTG----ATCTAT--GCC........2211.001000010
....................................................................................................................................................................................................................................................................................AACGGCA-----GCAGCGCC-------------------------------------------GGTG----------------------------------------------------------------------------GCGG.............................................................................................................................................................................................................................................................................................................................2311.001100000
...................................................................................................................................................................................................................................................................................CAACGGCA-----GCAGCGCC-------------------------------------------GGTG----------------------------------------------------------------------------G................................................................................................................................................................................................................................................................................................................................2111.001000001
...............CAC---CA------------------------------------------------------CGG------------CG------------------------------GC---------------------GG-----------------------GTGC----CGCCGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
..................................................................................................................................................................................................CA---G---------------------------------------------------------------------CGGTGGCAACGGCA-----GC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.501100000
droVir3
CAATT-TG-CTGCAGCAA---CA------------------------------------------------------C---------------------------------------AACAGCAGCAGCAGCAGCAGCAGC---GG-----------------------------------------------------------------------------------------------CGGCAGCA-GC------AGCAGCGG---CAGCA---------TCGCC--------A--------------------------------------------------------------------------------------------------------------------------GCGGCAACGGC----AGCG-----------------AACA-------------------------------------------------------------------------------------------------------CAAC-AGCAACTGTTGCTGTTGATGCA--------CAGGTGGCC--------CAGC-------------------CGCAGACCATAC--------------------AG-------AT--AC-------------AGGCGGGTCCGCCGGGCTTG----ATCTAT--GCCAATGGCGTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGTTGCTGTTGATGCA--------CAGGTGGCC--------C.............................................................................................................................2912.002000000000000000000000000000000000000000000000000000000000000002
............................................................................................................................................................................................................................................................................................CGCC--------A--------------------------------------------------------------------------------------------------------------------------GCGGCAACGGC----AGCG-----------------AACA-------------------------------------------------------------------------------------------------------CAAC-.............................................................................................................................................................................2812.002001000000000000000000000000000000000010000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGGCTTG----ATCTAT--GCCAATG....2211.001000000000010000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----------------AACA-------------------------------------------------------------------------------------------------------CAAC-AGCAACTGTTGCT................................................................................................................................................................2211.001000000000000001000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGCA--------CAGGTGGCC--------CAGC-------------------.......................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CGGC----AGCG-----------------AACA-------------------------------------------------------------------------------------------------------CAAC-AGCAACT......................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................GC----AGCG-----------------AACA-------------------------------------------------------------------------------------------------------CAAC-AGCAACTGTTGCT................................................................................................................................................................2711.001000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGTGGCC--------CAGC-------------------CGCAGACA...............................................................................................2111.001000000000000000000000000000000000001000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGGC----AGCG-----------------AACA-------------------------------------------------------------------------------------------------------CAAC-.............................................................................................................................................................................1911.001000000000000010000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................A-GC------AGCAGCGG---CAGCA---------TCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000010000000000000000000000000
........................................................................................................................................................................................................................................................A-GC------AGCAGCGG---CAGCA---------TCGCC--------A--------------------------------------------------------------------------------------------------------------------------GC...............................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGCCGGGCTTG----ATCTAT--GCCAATGGC..2911.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGGGTCCGCCGGGCT.........................1811.001010000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................CAGCA---------TCGCC--------A--------------------------------------------------------------------------------------------------------------------------GCGGCAACGGC----..................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000001000
CAATT-TG-CTGCAGCAA---CA------------------------------------------------------C---------------------------------------A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGTTGCTGTTGATGCA--------...............................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--AC-------------AGGCGGGTCCGCCGGGCTTG----...................2411.001000000000000000000001000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................GCC--------A--------------------------------------------------------------------------------------------------------------------------GCGGCAACGGC----AGCG-----------------AACA-------------------------------------------------------------------------------------------------------CAA...............................................................................................................................................................................2611.001000010000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC-AGCAACTGTTGCTGTTGAT..........................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCCGGGCTTG----ATCTAT--GCC........2111.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................GG---CAGCA---------TCGCC--------A--------------------------------------------------------------------------------------------------------------------------GCGGCAAC.........................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTCCGCCGGGCTTG----ATCC...............2111.001100000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTG----ATCTAT--GCCAATGGC..2011.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGC----AGCG-----------------AACA-------------------------------------------------------------------------------------------------------CAAC-.............................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCTTG----ATCTAT--GCCAAT.....1911.001000000000000000010000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCG-----------------AACA-------------------------------------------------------------------------------------------------------CAAC-AGCAACTGTTGCT................................................................................................................................................................2511.001000000000000001000000000000000000000000000000000000000000000000
CAATT-TG-CTGCAGCAA---CA------------------------------------------------------C---------------------------------------AACAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000001000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGACCATAC--------------------AG-------AT--AC-------------AGGCG......................................2311.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACGGC----AGCG-----------------AACA-------------------------------------------------------------------------------------------------------CAAC-AG...........................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
CAATT-TG-CTGCAGCAA---CA------------------------------------------------------C---------------------------------------AACAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACTGTTGCTGTTGATGCA--------...............................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
...........GCAGCAA---CA------------------------------------------------------C---------------------------------------AACAGCAGCAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--AC-------------AGGCGGGTCCGCCGGGCTTG----ATCT...............2711.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------CAGGTGGCC--------CAGC-------------------CGCAGACC...............................................................................................2211.001100000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................A---------TCGCC--------A--------------------------------------------------------------------------------------------------------------------------GCGGCAACGGC----A.................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGACCATAC--------------------AG-------AT--AC-------------A..........................................1911.001001000000000000000000000000000000000000000000000000000000000000
.............AGCAA---CA------------------------------------------------------C---------------------------------------AACAGCAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.501001000000000000000000000000000000000000000000000000000000000000
.............AGCAA---CA------------------------------------------------------C---------------------------------------AACAGCAGCAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.501000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................................................AGCAGC---GG-----------------------------------------------------------------------------------------------CGGCAGCA-GC------AGCAGCGG---.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2640.251001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................GCAGCAGCAGCAGC---GG-----------------------------------------------------------------------------------------------CGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.102001100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................GCAGCAGCAGC---GG-----------------------------------------------------------------------------------------------CGGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.102001000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................GCAGCAGC---GG-----------------------------------------------------------------------------------------------CGGCAGCA-GC------AGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26130.081001000000000000000000000000000000000000000000000000000000000000
.................A---CA------------------------------------------------------C---------------------------------------AACAGCAGCAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19160.061001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................CAGCAGC---GG-----------------------------------------------------------------------------------------------CGGCAGCA-GC------AGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23190.051000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................AGCAGCAGCAGCAGCAGC---GG-----------------------------------------------------------------------------------------------CGGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000000000010000000000000000000000000
...................................................................................................................................CAGCAGCAGC---GG-----------------------------------------------------------------------------------------------CGGCAGCA-GC------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................GCAGCAGCAGCAGCAGC---GG-----------------------------------------------------------------------------------------------CGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000100000000000000000000000000000000000000000000000000000000000
.......................................................................................................................CAGCAGCAGCAGCAGCAGCAGC---G...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000001000000000000000000000000000000000000000000
......................A------------------------------------------------------C---------------------------------------AACAGCAGCAGCAGCAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000010000000000000000000000000000000000000000000000000
droGri2
TTTGC-TG----CACCAC---AA------------------------------------------------------C---------------------------------------AACAACGGCAGGAGCAGCAGCAGC---TG-----------------------------------------------------------------------------------------------TCGCTGGC-AC---AGCAGCAG------CAGCA---------ACAAC--------AGCTGC---AGTTGTCGCCGGCACAGC--GGCAACAGCCGAGCAG------------------------------------------------------------CA--------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCAGCAGC-AGCAAC-------------------------------------------------------------------AGACCATAC--------------------AG-------AT--TC-------------AAGCTGGTCCGCCTGGACTG----ATCTAT--GCCAATGGCGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATAC--------------------AG-------AT--TC-------------AAGCTGGT...................................2011.00110
............................................................................................................................................................................................................................................................................................................GC---AGTTGTCGCCGGCACA...................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110
..............................................................................................................................................................................................................................................................................AGCA---------ACAAC--------AGCTGC---AGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------AT--TC-------------AAGCTGGTCCGCCTGGAC.........................2311.00110
..............................................................................................................................................................................................................................................................................................AC--------AGCTGC---AGTTGTCGCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGGTCCGCCTGGACTG----ATCTAT--G..........2611.00110
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------------AAGCTGGTCCGCCTGGA..........................1811.00110
......................................................................................................................ACAACGGCAGGAGCAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101
...............................................................................................................................................................................................................................................................................................C--------AGCTGC---AGTTGTCGCCGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110
..............CCAC---AA------------------------------------------------------C---------------------------------------AACAACGGCAGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110
.................................................................................................................................................G-----------------------------------------------------------------------------------------------TCGCTGGC-AC---AGCAGCAG------CAGCA---------AC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110
.........................................................................................................................................................................................................................................................................................................................................ACAGCCGAGCAG------------------------------------------------------------CA--------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCA...................................................................................................................................................................................2020.50110
................................................................................................................................................................................................................................................................................................................................................AGCAG------------------------------------------------------------CA--------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCAGCAGC-A............................................................................................................................................................................19200.05110
droWil2
GCAGC-GG-GTACAGCAG---TGG---------------------------------------C--------------------------AGCGGGTGCAGCGGCGGTGGGTACAG---------------------------------------------------------------------------------------------------------------------------------------------------------CAGTGGCAGCGGGT-----GCAGCGGC-------------------------------------------GGTA----------------------------------------------------------------------------GCGGCGGCAGGTACCGTAATG---------------GATGCGACAGCAGCGGCGGCGGGTACAGCGGTGGCAGCGGCGGTGGGTACA-------------------------------------------------GCAGTGGCAGC-GGCGGCGGGTA-----------------------------------------------------------------------------------------------------------------------------------------C-----AGCAGT--GGCAGCGGCGGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................................................................................................................................GGT-----GCAGCGGC-------------------------------------------GGTA----------------------------------------------------------------------------GCGGCG...........................................................................................................................................................................................................................................................................................................................2111.00100100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTACA-------------------------------------------------GCAGTGGCAGC-G............................................................................................................................................................................21200.35700070
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACAGCAGCGGCGGCGGG......................................................................................................................................................................................................................................................................20200.05101000
.CAGC-GG-GTACAGCAG---TGG---------------------------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AATG---------------GATGCGACAGCAGCGGC............................................................................................................................................................................................................................................................................21200.05101000
.CAGC-GG-GTACAGCAG---TGG---------------------------------------C--------------------------A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGGCGGCGGGTACAGCGG..............................................................................................................................................................................................................................................................22200.05100100
dp5
CCATC-AG-CATCAGCAA---CAG---------------------------------------C--------------------------A---------------------------------GCAGCAGC------------AGC---------------------------------AG---------------------------------------------------------------------C------AGCAGCAACAGCAGCA---------ACACC--------AGCAG-------------------------------------------------------------------------------------CAACAGCAGCAGCAGCAACA----------------------G-------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGC-AGCGACTGATGCCG--------CAACATTATCA-----------------------------------------GTTCGGGA---------------------------------------------CGGAGGGAGGCATTCCGGGCTTC------------AGC--GAGCGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCATTCCGGGCTTC------------AGC--GA....2111.0010001000000
................................................................................................................................................................................................................................................................................................................................................................................................................GCAACA----------------------G-------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGC-AGCGAC.......................................................................................................................................................................2340.2510100000000
..................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAGCAACA----------------------........................................................................................................................................................................................................................................................................................................................20200.1020000200000
............CAGCAA---CAG---------------------------------------C--------------------------A---------------------------------GCAGCAGC------------AGC---------------------------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020200000000
...................................................................................................................................................................................................................................................................................................................................................................................................................ACA----------------------G-------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGC-AGCGAC.......................................................................................................................................................................20140.0710100000000
................AA---CAG---------------------------------------C--------------------------A---------------------------------GCAGCAGC------------AGC---------------------------------AG---------------------------------------------------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000100000
.................A---CAG---------------------------------------C--------------------------A---------------------------------GCAGCAGC------------AGC---------------------------------AG---------------------------------------------------------------------C------AG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510100000000
.................A---CAG---------------------------------------C--------------------------A---------------------------------GCAGCAGC------------AGC---------------------------------AG---------------------------------------------------------------------C------A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
..............GCAA---CAG---------------------------------------C--------------------------A---------------------------------GCAGCAGC------------AGC---------------------------------A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000100000
..................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAGCAACA----------------------G-------------------------------------------------------------------------------------------------------------------------------C.......................................................................................................................................................................................22200.0510100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAACA----------------------G-------------------------------------------------------------------------------------------------------------------------------C.......................................................................................................................................................................................19200.0510000100000
......AG-CATCAGCAA---CAG---------------------------------------C--------------------------A---------------------------------GCAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000100000
...........................................................................................................................................................................................................................................................................................................AG-------------------------------------------------------------------------------------CAACAGCAGCAGCAGCA.................................................................................................................................................................................................................................................................................................................................................19200.0510000100000
......................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAACA----------------------G-------------------------------------------------------------------------------------------------------------------------------CAGC....................................................................................................................................................................................21200.0510100000000
....................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAGCAACA----------------------G-------------------------------------------------------------------------------------------------------------------------------CAGC....................................................................................................................................................................................23200.0510100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................CAACA----------------------G-------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGC-AGCG.........................................................................................................................................................................20200.0510000100000
.........................................................................................................................................................................................................................................................................................................GCAG-------------------------------------------------------------------------------------CAACAGCAGCAGCAGCAACA----------------------G-------------------------------------------------------------------------------------------------------------------------------CA......................................................................................................................................................................................27200.0510000000001
.................................................................................................................................................GC---------------------------------AG---------------------------------------------------------------------C------AGCAGCAACAGCAGCA---------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000001
....................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAGCAACA----------------------G-------------------------------------------------------------------------------------------------------------------------------CAGCA...................................................................................................................................................................................24200.0510000100000
...............................................................................................................................GCAGC------------AGC---------------------------------AG---------------------------------------------------------------------C------AGCAGCAACAGCAGCA---------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510100000000
................AA---CAG---------------------------------------C--------------------------A---------------------------------GCAGCAGC------------AGC---------------------------------AG---------------------------------------------------------------------C------A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000100000
...............CAA---CAG---------------------------------------C--------------------------A---------------------------------GCAGCAGC------------AGC---------------------------------A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................CAACA----------------------G-------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGC-AGC..........................................................................................................................................................................19200.0510000100000
droPer2
CAA------------CAGCAG------------------------------------------CA--------------------------------------------------------------GCAACAGCAGCA------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGCGG---CGCAACAGCAGCAACAGCGCGTGCAGCAGCAGCAGCGCGAGAACCTCGCTTCGGCAATGGC----CGCCGG---------------AATGCGGCATCATCCGCTG--------------------------------------------------------------------------------------------------CTGGCGCCG--------CCA------------------------------------GAGGCGA--TGCATGCC----------------------------AATCCCT--TC-C------------AGCTG-----CTGCGCATG-----CCCCT--GCCGCCGGCGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................A------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGCGG---CGCAACAGCA.........................................................................................................................................................................................................................................................................................................................................................................1911.001001000
..A------------CAGCAG------------------------------------------CA--------------------------------------------------------------GCAACAGCAGCA------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
droAna3
TCATC-TGAGCTCGGCTG---CAA---------------------------------------TACCTTCCT-----CGTCT------TCGGCTGGATCGCTGTCATCTGCCTCATCGACGCCAACAGCAACA------------------GC---------------------------AA---------------------------------------------------------------------C------TGCAACAGCAACAGCC---------ACGGC--------GAATGCAACGGCAA---------CTG--CAACAGTCTCC---------------------------------------------------------------CAGCAACA-----------------------------------------------------------------------------------------------------------------------------------------------------TCAGCAGCAAC-AGCAACAATCG-------------------------------------------------------------------------------------------------------------------------------CCGCCAAATTTA----ATCGAT--ATCAGCGAAGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................................CAACGGCAA---------CTG--CAACAGTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.......................................................................................................................................................................................................................................................................CAGCAACAGCC---------ACGGC--------GAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.............................................................................CGTCT------TCGGCTGGATCGCTGTCATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.............................................................................................................................................................................................................................................................................CAGCC---------ACGGC--------GAATGCAACGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
....................................................................................................................................................................................AA---------------------------------------------------------------------C------TGCAACAGCAACAGCC---------ACGGC--------............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
...............CTG---CAA---------------------------------------TACCTTCCT-----CGTCT------T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
....................................................................TCCT-----CGTCT------TCGGCTGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.501100000
................................................................................................................................CAACA------------------GC---------------------------AA---------------------------------------------------------------------C------TGCAACAGCAACAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2540.251010000
droBip1
CAG------------CAACAG------------------------------------------CAGCGGCAGTGC-C-------------G---------------------------------GC------------------GGCAGCAAC---------------------------AG---------------------------------------------------------------------C------AGCAGCAGCAACAAT---------------GCAGCCGTGGCAGCGGC--------------------GG-----------------------------------------------------------------------CGGCATCA---GCG-------GCAGCAGCAGC----GGCG-----------------GGCA--TCAA---------------CAACAGT-------------------TA------------------------TCTGCCGCCGT---------------------------------CGCCG--------CAGCATCACCAGCAGC------------------------------------------------------------------ATCGTTTAT--TC-C------------AGCAG---------GCGCCCTAC-AGTAT--GCCCACGGCGTSizeHit CountTotal NormTotal
No Reads
droKik1
CCATC-AT-CCGCATCAT---CATC------TGCTGGCAGCCTCCGCCGCCGCTGCACAGCAGCA-----------------------------------------------------------GCAGCAACGTCA-----------------------------------------GGTGG------CCGCCGCCGCTGTGGCCGCAGCAGCCGCCCAACAGCAGGTCGCCGCCCATCATCAGC---A-GCAGC---------------------------------------------------------------------------------------------------------------------------AGCAGGCGCAACAGCAGCAGGCGCAGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------G-CAGCAGC-------------------------------------------------------------------AGG-------------------------------------------------------------------------------CCATC--TCCGCCGTTGCSizeHit CountTotal NormTotal
No Reads
droFic1
CAA------------CAGCAG------------------------------------------TAGCAGCAACAT-C-------------A---------------------------------GC------------------CGTGGCAGC---------------------------AG---------------------------------------------------------------------C------AGCAACAGCAACATCG---------------------------------------------------------------------------------------------------------------------GCGGCAGCAGCAACATCGGAA-------GCGGCAGCAAC----GCGAAG---------------GATACGGCACAAGCGTCGCTCGTCGCAACGACGGC-----------------------------------------------------------------------GCGGC-AACAA--------------------------CA------------------------------------------------------------------------------AC--GC-------------GGTGCTGTCATCTGGGATTG-----GGATT--GGCATCGGCATSizeHit CountTotal NormTotal
No Reads
droEle1
CGATA-TG-GTGGACTAC---ACA-----------------------------------------------------CAGCTACAGCCGCAGCG------------------------------------------------------------------------------------------ATTGCTCCTGCA---G---------------------------------------------------------------------CAGCAGCAGCAGCA-----GCAA----------------------------------------------CAGCAACA----------------------------------------------------------------------------GCAGCAGC----AACATGCCCATGCGGCGGCAG---------------------------------------------------CAGTTGTTGCCCAGCAGCAGCAGCAAC------TCGCCAACCAGCAGCAACACCCGCAAC-AGCAA--------------------------CA----------------------------------------------------------------------------------------------------------------------------------------GCA-SizeHit CountTotal NormTotal
No Reads
droRho1
CAA------------CAGCAG------------------------------------------CAGCAGCAACAG-C-------------A---------------------------------GC------------------AGCAGCAGC---------------------------AA---------------------------------------------------------------------C------TGCAGCAGCAACAGCA---------GCAAC--------AACTGCAACAGCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCAGC-AGCAACAGATGCTGCAGATGCA--------CCAGCGGCT-----GTCCGGCGGTGCTGGCGCTGGA--GCTGTGGGCACCTT--------------------GG---------------------------GAAGGGTCCGCATCGTGGG----GTCCAT--GCCCAA--GGCSizeHit CountTotal NormTotal
No Reads
droBia1
CCAGC-TG-CCGGG-CAC---CT-------------------------------------------------------GG------------CA------------------------------GA---------------------GT-----------------------GTGC----CGCCCCAGCCCCA--------------------------------------------------GCTGGCCAG---TGCAGCAG---CCGCCACC---------GCG------------CCGC---AGATC----------------------------------------------------------------------------------------ACACAGGGCGTGG--------------GCAGC----GCACTGCCAC--AGGCGGCCG---------------------------------------------------GAGTGGTTG------------------------CCTATCCG----------------------------ATG-----------CAGCAGTTCC-----------------------------------------AGGTCAGTC---------------------------------------------CACAGGTGAGTTGCCCAGGCTTTCGTT-GA--TAATCATATGGCGGSizeHit CountTotal NormTotal
No Reads
droTak1
CCATCCAG-ATGCAGCAG---CAG---------------------------------------G--CGGCAGT-G-C-------------A---------------------------------GG------------------CGCAGCAGCAACAGCAGCAGCAACAAGTCTCCCAGCAG------CAG--------------------------------CAGGTGAACGC---------------------------------------------------------------CCAGCAACAGCAAGCGGTGGCGCAGC--AGCAGCA-----------------------------G-------------------------------------------------------------------------------------------------------------GCGGTGGCGCAGGCCCAGCAGCAGCAGAGGGAGCA-------------------------------------------------GC----------AACAG--------------------------------------------------------------------------------------------------------------------------------CAGGTCGCCCAGGCTCA-----GGCGC--AGCAGCAGCAGSizeHit CountTotal NormTotal
No Reads
droEug1
CCATC-AT-CCGCATCAC---CATCCGGCCCTATTGGCGGCCACCGCCGCCGCCGCCCAACAACA-----------------------------------------------------------GCAGCAACGCCA-----------------------------------------ACTGG------CCGCCGCCGCCGTGGCCA-----------------------------------------------------------------------------------------------------------------CAG--CAGCAGTCGCCCAACAGCAGCAGCAACAGCAGCAGCAGGCCGTTGTC---------------CAACAGCAGCAGCAGCAA--------------------------------------------------------------------------------------------------------------------------------GTTGTTGCCGCCGCC---------------CAGC-A----------------------------------------------------------------------------------------------------------------------------------------------------------GCAAC--ATCAACAGCAASizeHit CountTotal NormTotal
No Reads
dm3
CCATGTTG-ATGCATCAC---CA-----------------------------------------------------------------------------------------------------GCAGCAGCAGCA-----------------------------------------GGCAG------CCGCAGCAGCGGCAGCCGCAGCA-------------------------------------------------------------------------------------------------------------------------GCCCAGCAGCAACA----------------------------------------------------------------------------GCAGCAGC----ACAATG---------------GACGCGACGGT-----------------------------------------------------------------------------------------------------AGCAAC-------------------------------------------------------------------AGTTCGCGTGGAGCCAACGAGGATCGTCCAA-------ATGGACGGAGCTCGCACACAGG-------ACGAGGATCCAGTT-GC--TCACCGGCC--AGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCGCGTGGAGCCAACC.................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCGCGTGGAGCCAAC..................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCGCGTGGAGCCAACCTT...............................................................................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCGCGTGGAGCCAT...................................................................................1731.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGCCAACGAGGATCG..........................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-----------------------------------------------------------------------------------------------------AGCAAC-------------------------------------------------------------------AGTTCGCGTG..........................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------------------------------------------------------------------AGTTCGCGTGGAGCCAAC..................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCGCGTGGAGCCAAAA.................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................AGCAGCGGCAGCCGCAGCA-------------------------------------------------------------------------------------------------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................1940.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................CAGCAACA----------------------------------------------------------------------------GCAGCAGC----AC................................................................................................................................................................................................................................................................................................................18200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................CCCAGCAGCAACA----------------------------------------------------------------------------GCAGCAGC----..................................................................................................................................................................................................................................................................................................................21160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............ATCAC---CA-----------------------------------------------------------------------------------------------------GCAGCAGCAGCA-----------------------------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CCACC-TG-TTGCTGCTG---CC-----------------------------------------------------------------CCAGCGGAATCAGCACCTGCACCTGCAACAACACCAGCAGCAACAGCAGCACCTGCAG------------------------------------------C--------------------------------------------------AGCAGC---A-ACAGC---------------------------------------------------------------------------------------------------------------------------AGCAGCAGCATCTGCAGCAGCAGCAACA--------------------------------------------------------------------------------------------------------------------------------------------------------------C-CAG--------------------------------CAACATGCGCGACTGGCGACGACGACGCAGGC----------------GACGTCCGTTGGCAGC---------------------------------------------------G----A-CCAC--ACCGAT--GGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCGACTGGCGACGACGACGC...............................................................................................................2311.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................AACA--------------------------------------------------------------------------------------------------------------------------------------------------------------C-CAG--------------------------------CAACATGCGCGACTGGCGAC.......................................................................................................................2811.00100010000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACA--------------------------------------------------------------------------------------------------------------------------------------------------------------C-CAG--------------------------------CAA........................................................................................................................................18190.7414000001400000000000
...................................................................................................................................CAGCAGCACCTGCAG------------------------------------------C--------------------------------------------------AGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50100000000000100000
.................................................................................................................................................................................................................................................CAGC---A-ACAGC---------------------------------------------------------------------------------------------------------------------------AGCAGCAGCAT...............................................................................................................................................................................................................................................................................................................................................................21140.07100000000001000000
...................................................................................................................ACAACACCAGCAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.05100000001000000000
droSec2
CCACC-TG-TTGCTGCTG---CC-----------------------------------------------------------------CCAGCGGAATCAGCACCTGCACCTGCAACAACACCAGCAGCAACAGCAACACCTGCAG------------------------------------------C--------------------------------------------------AGCAAC---A-ACAGC---------------------------------------------------------------------------------------------------------------------------AGCAGCAGCATCTGCAGCAGCAGCAACA--------------------------------------------------------------------------------------------------------------------------------------------------------------C-CAG--------------------------------CAACATGCGCGACTGGCGACGACGACGCAGGC----------------GACGTCCGTTGGAAGC---------------------------------------------------G----A-CCAC--ACCGAT--GGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC----------------GACGTCCGTTGGAAGC---------------------------------------------------........................1813.0030030
....C-TG-TTGCTGCTG---CC-----------------------------------------------------------------CCAGCGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCGACTGGCGACGAC....................................................................................................................1811.0011000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTCCGTTGGAAGC---------------------------------------------------G----A-C................1911.0010010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGCAGGC----------------GACGTCCGTTGGAAGC---------------------------------------------------........................2611.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGACGACGCAGGC----------------GACGT......................................................................................2011.0010010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGC----------------GACGTCCGTTGGAAGC---------------------------------------------------G----A-CC...............2311.0011000
..............................................................................................................CTGCAACAACACCAGCAGCAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
................................................................................................................................................................................................................................................GCAAC---A-ACAGC---------------------------------------------------------------------------------------------------------------------------AGCAGCAGC.................................................................................................................................................................................................................................................................................................................................................................20200.1020020
..................................................................................................................................................................................................................................................AAC---A-ACAGC---------------------------------------------------------------------------------------------------------------------------AGCAGCAGCA................................................................................................................................................................................................................................................................................................................................................................19200.0510010
droYak3
CCAGC-GG-CAGCAGCAG---CAT---------------------------------------C--------------------------A---------------------------------GC------------------GGCAGCGCC---------------------------AG---------------------------------------------------------------------T------TTCAGCAGCAACAGCG---------GTGCC--------AGCGGCAGCAGCAGCCAGACGCACAGCACGGCCGTC-----------------------------A---GC-----------AGTGCCACAGATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAACAA---------------------------------CAACGGC------------------------------------------------------------------AATCACAAT--CC-GAGCT----TACAA---------C-------------TGAAT--GGTAATGGTGGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------------------------------------------------------------------AATCACAAT--CC-GAGCT----TACA..........................................2111.00101000000000
droEre2
CCAAGTGG-CGGCAGCAG---CAG---------------------------------------CAGCGGCAAT-GCG-------------G------------C-----CTTGCTGCAACG-CAGCAGCAACAA--------------------------------------CCTCCAGCAG------CTGCAACAACAGCAGCTGCAGCA-----------------------------ACAGCAGCA-GC------AGCAGCAG---------------------------------------------------------------------------------------------------------------------------------------CA--------------------------------------------------------------------------------------------------------------------------------------------------------ACATTGGCAA-------CTGCAGCTG--------CAG------------------------------------CAGGCG---------------GACGAGCGATTGTTGC-----------------------------------------------------------------GCAAAATCGGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................T-GCG-------------G------------C-----CTTGCTGCAACG-CAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
........................................................................T-GCG-------------G------------C-----CTTGCTGCAACG-CAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
....................................................................................................................CAACG-CAGCAGCAACAA--------------------------------------CCTCCAGCAG------C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------------------------------CAGGCG---------------GACGAGCGATTGTT.............................................................................2211.0010000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------CTGCAGCTG--------CAG------------------------------------CAGGCG---------------GACGAGC....................................................................................2711.0010000100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--------CAG------------------------------------CAGGCG---------------GACGAGCGATTGT..............................................................................2311.0010000100
..................................................................................................................................................................................................................................................................................................................................................................................................................A--------------------------------------------------------------------------------------------------------------------------------------------------------ACATTGGCAA-------CTGCAGCT................................................................................................................................................................1911.0010000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--------CAG------------------------------------CAGGCG---------------GACGAGCGATT................................................................................2111.0010000100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--------CAG------------------------------------CAGGCG---------------GACGAGCGATTGTTGC-----------------------------------------------------------------..........2611.0010100000
.............................................................................................................................................................................................TGCAACAACAGCAGCTGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5011000000
.....................................................................................................................................................................................................................................................AGCA-GC------AGCAGCAG---------------------------------------------------------------------------------------------------------------------------------------CA--------------------------------------------------------------------------------------------------------------------------------------------------------ACATTGGCA................................................................................................................................................................................2520.5010000010
..............................................................................................................................................................................................................CAGCA-----------------------------ACAGCAGCA-GC------AGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.2550000050
.................................................................................................................................................................................................................CA-----------------------------ACAGCAGCA-GC------AGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.2040000040
...............................................................................................................................................................................................CAACAACAGCAGCTGCAGCA-----------------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2070.1410000100
......................................................................................................................................................................................................AGCAGCTGCAGCA-----------------------------ACAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1980.1310000010
................................................................................................................................................................................................................GCA-----------------------------ACAGCAGCA-GC------AGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1020000020
...................................................................................................................................................................................................................................................GCAGCA-GC------AGCAGCAG---------------------------------------------------------------------------------------------------------------------------------------CA--------------------------------------------------------------------------------------------------------------------------------------------------------ACA......................................................................................................................................................................................21200.0510000100

Generated: 05/17/2015 at 11:25 PM