ID:

dmo_951

 Coordinate:

scaffold_6496:3541244-3541394 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.8 -7.8 -7.5

Flybase annnotation

CDS [Dmoj\GI19973-cds]; exon [dmoj_GLEANR_4865:2]; intron [Dmoj\GI19973-in]

Repeatable elements

NameClassFamilyStrand
Gypsy-22_DWil-I-intLTRGypsy+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACAAAGCAACCGAAGGGAGCCCCATCAATTAACAAGCAGCTATACATATACAGCTTAACATATATATTCACATATATATTTATATATCGATATATATATATATATTTTTGTGTGTGTGTCTCTGTGTGCGTGCGTGTCTGTGTGTACTATACAAAATTTTTGTTTTGTTTCGCGTGTGTTGTGTTGTATAACACCACACAGGGAGAGCACAGAGAGCCAGAGCGAGAGCGAGAAGCAGATCAAACAGGATC
*****************************************************************************************************.....................((((((.(((((........)))))))))))..************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 M060
embryo
.................................................................................................................................GTGCGTGTCTGTGTGTACTATACAAA................................................................................................ 26 0 1 2.00 2 0 2 0
.....................................................................................................ATATTTTTGTGTGTGTGTCTCTGT.............................................................................................................................. 24 0 1 1.00 1 1 0 0
...........................................................................................................................................................ATTTTTGTTTTGTTTCGCGTGTGTTGT..................................................................... 27 0 1 1.00 1 1 0 0
.......................................................................................................................................................................................................................GCCAGAGCGAGAGCGAGAAG................ 20 0 1 1.00 1 0 1 0
.............................................................................................................................................................................................AACACCACACAGGGAGAGCACAGAG..................................... 25 0 1 1.00 1 1 0 0
...................................................................................................................................................................................TGTGTTGTATAACACCACACAGGGAGAGC........................................... 29 0 1 1.00 1 0 1 0
....................................................................................................................................................................TTGTTTCGCGTGTGTTGTGT................................................................... 20 0 1 1.00 1 1 0 0
...................................................................................................................................................................................................................GAGAGCCAGAGCGAGAGCGAGAA................. 23 0 1 1.00 1 1 0 0
...AAGCAACCGAAGGGAGCCCCA................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1
.................................................................................................................................GTGCGTGTCTGTGTGTACTATAC................................................................................................... 23 0 1 1.00 1 0 1 0
....................................................GCTTAACATATATATTCACAT.................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0
.................................................................................................................................................................................................................................GAGCGAGAAGCAGATCAAACA..... 21 0 1 1.00 1 1 0 0
......................................................................................................................................................................................................................AGCCAGAGCGAGAGCGAGAAGCAG............. 24 0 1 1.00 1 1 0 0
.......................................................................................................................................................................................................AGGGAGAGCACAGAGAGCCAGAGC............................ 24 0 1 1.00 1 0 0 1
.....................................................................................................................GTCTCTGTGTGCGTGCGTGTCTGTGT............................................................................................................ 26 0 1 1.00 1 1 0 0
........................................................................................................................................................................................TGTATAACACCACACAGGGAGAGC........................................... 24 0 1 1.00 1 0 1 0
..........................................................................................................................................................AATTTTTGTTTTGTTTCGCGTGTGTTGT..................................................................... 28 0 1 1.00 1 0 1 0
..................................................................................................................................................................................................CACACAGGGAGAGCACAGAGAGC.................................. 23 0 1 1.00 1 0 1 0
......................................................................................................................................................................GTTTCGCGTGTGTTGTGT................................................................... 18 0 1 1.00 1 1 0 0
....................................................GCTTAACATATATATTCACATATAT.............................................................................................................................................................................. 25 0 1 1.00 1 0 0 1

Anti-sense strand reads

TGTTTCGTTGGCTTCCCTCGGGGTAGTTAATTGTTCGTCGATATGTATATGTCGAATTGTATATATAAGTGTATATATAAATATATAGCTATATATATATATATAAAAACACACACACAGAGACACACGCACGCACAGACACACATGATATGTTTTAAAAACAAAACAAAGCGCACACAACACAACATATTGTGGTGTGTCCCTCTCGTGTCTCTCGGTCTCGCTCTCGCTCTTCGTCTAGTTTGTCCTAG
************************************************************************************************.....................((((((.(((((........)))))))))))..***************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V049
head
.................................................................................................................................................................................................................GTCTCTCGGTCTCGCTCTCGC..................... 21 0 1 1.00 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6496:3541194-3541444 + dmo_951 ACAAAGCAACCGAAGGGAGCCCCATCAATTAACAAG----------------------------C------------AGC----TATACATA----TACAGCTT----AACATATATAT-T--------------CACATATAT--ATTTATATATCGATATA--TATATAT------------ATATTT---TTGTGT---GT---------------------GTGT--CT--CTGTGTGCGTGCG--------------TGT------------------CT-----------------G---------------TGTGTACTAT-----------------ACAAA--ATTTTTGTTTTGT----------------------------------------TTCGCGTGTGTT-------------GTGTTGTATAACACCACACAGGGAGAGCACAGA----------------GAG---------------------CCAGAGCGAGA-------G-------CGAGA-AGCAGATCAAACAGGATC
droVir3 scaffold_12875:542242-542462 + ACAAAGCAACCGAAGGGAGCCCCAT---------------------------------------CATTTAC------AGC----TATACATA----AACAGCTT-------------------------------AACATATAT--AT--ATA------T--ATACATATAT------------ATATATAT---ATTGTGT----GT------------------GTC--TC--TTGTGTGCGTGTG--------------T--------------------CT-----------------G---------------TGTTTACTAT-----------------ACAAA--ATTTCTGTTTTGT----------------------------------------TTCGCGTGTGTA-------------GTGTTGTATAACAGCACAG---GAGAGCATAGA----------------GAG---------------------AAAGA--GAGA--------------GAGAGA-AACAGATCAAACAGGATC
droGri2 scaffold_15245:10422194-10422411 - ACAAAGCAACCGAAGGGATCCCCAT---------------------------------------CATTTGCATAT----ACTCC---------------GTCT------A-----------------------------TATAT--AC--ACA------T--ATACAGATAT--AT--------AGATATATTTTGTGT---GT---------------------GTGT--CT--CTGTGTGCGTGTG--------------TC-------------------CT-----------------G---------------TGTGTACTAT-----------------ACAAA--ATTTCTGTTTTGT----------------------------------------TTCGCGTGTGTG-----------GAGTGTTGTCTAACAACACAG----------AAGAGGGA--------AAGAGAT---------------------ACATA--TAGAGTTATCAGCAGG--------------ATCAAA--TAAGA
droWil2 scf2_1100000004514:897427-897633 + ACCATTT-----------------A------------------------------------------------------------------A----AATTCATT----TGTTTATATTGACTTAATAGATGATTTCATTGACGT------ATTTCTCTATATA--TATGTAT------------GTATGT---TTGTGT---TT---------------------GTGT--AA--GTGTGTGGGTGGGTATTAGCGTGTGTGTC----------------------------------------------------------------------------------------ACTTTGATT--------------------------ACT--------------TTTCCCTTTTGCT-------------ATGTT------------------AAACAAAAGGGTTCAATGC-A-A------AGAGTCGTAGATAA-----------------------------------GAGTAGAGAGT-AGG-AGAAAC
dp5 4_group1:2625278-2625452 - TATAC------------------------------------------------------------------------------------ATA----CATACATT----AACACACACAT-ATATAT------------------------------------ATACATATAT------------GTATGGGT---ATTGTGT----GTGTGTTTGCTGTGGGTATAT----GGGTGGATG-----------------------------------------------------------------------------------------------------------------GGTCCGCTTTGT-------TTAAAGTAG----------------------------AGCGTGCG-------------TATTTAT--A---------AGGCAAACAACAGAGGAA--------C------CCA-----------G------CCAGAGCCCCA-------GCCAGAAC----------------CCAGAACC
droPer2 scaffold_5:2581323-2581516 + ATAC-------------------------------------------------------------------------------------ATA----CATACATTAACACA--CAAACAC-ATATATA------------TATAT--AT--ATATATATATATA--TATATAT------------ATATGGGT---ATTGTGT----GTGTGTTTGCTGTGGGTATAT----GGGTGGATG-----------------------------------------------------------------------------------------------------------------GGTCCGCTTTGT-------TTAAAGTAG----------------------------AGCGTGCG-------------TATTTAT--A---------AGGCAAACAACAGAGGAA--------C------CCA-----------G------CCAGAGCCCCA-------GCCAGAAC----------------CCAGAACC
droAna3 scaffold_13117:4818375-4818611 + TGTAT------------------------------------------------------------------------------------GTA----TATAG-------T--ATATGCAT-ATGTATT--------GCCGTATGTATGT--AAATAATCGTATA--TATATAT------------ATTATT---TTCCAT---TT---------------------AAGA--TA--TCCAGCTAGCAGG--------------TTC--------TCTTTTGAAATT------CGGAACGCGCTTTAGGAACCGCAGAAATTCTTTT-------TATTTTTTT---------TCGCAA-----ATAT-------TT-------------CT--------------------TGTATAAT-------------ATATTGT-------TAGAA--------AGAGAGATTT-----AGA----GAGAGAGTGAGAGAG-----------------------------------AGAGA-GGGGGATAGGA-AAGGAT
droBip1 scf7180000396540:43098-43230 + TATGT------------------------------------------------------------------------------------ATA----TGTATATG----TATATGTATAT-GTATATG----TA------TATGT------ATATGTATATGTA--TATGTAT------------ATGTAT---ATGTAT---AT---------------------GTAT--AT--GTATATGTATATGTATATGTATATGTATA---------------------------------------------------------------T-----------------G-------TATATGT---------------------------ATTATTTAAT--------TT------------------------------------------------------------------------------------------------------------------------------------------------TG
droKik1 scf7180000302808:57652-57815 + ATATATA-----------------T------------------------------------------------------------------A----TATATATA----TATATATATTT-ATATATA------------TATTT--AT--ATATATATTTATA--TATATAT------------ATATTT---ATATAT---A-----------------------TATATTT--ATTTATTTATATG------------------------------------------------------------------------------------TATATTTTTTTATG-------TAT----------------AA-------GTGTTTATTAATTAATGTATGTC---TAAGTGTATG-------------TTAC-AGACTAC--C--------AA-----------------------------------------------------------------------------------------------ATA
droFic1 scf7180000454104:1474127-1474285 + AACAAA----------------------------------------------------------TATTTACATATATATC----CA----------------CA----CA-----------TAAACA----CACCCACACGTAT--ATATACATATCAATATA--TACACAT------------ATATAAAT---ATTTTAT------------------------TAT--CC--TTGCCTAAGTAAG--------------TA-------------------TT-----------------T---------------TGCCTACTAG-----------------AGAAACCATAAATGTTTTGTTATTG---------------------------------------AGCATGTT-------------GGCTTGT--------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000490141:763762-763991 - AGCTC------------------------------------------------------------------------------------AAG----CAGGTATA----TA-----------------------------TATGT----------ATATATATA--TATATAT------------ATATATAT---ATTATATATCTGTCTGCTTGCTCTGTGTTTTT--------------------------------------------------------------------------------------------GACAGCTGCTGAACAT----------G-AAA----ATGAGTTTTCTTCTTCGACT-------------GCT--------------TTTTATGCCAGTCAAGCCAAATAAAAATAATAA-------TAAAA--------TCAGCGCAAT-----AAG----CAAGCAATGAAAGCG--GCAAAAGCGAAAGCGAGA--------------CCGAGA-ATCGATTTATACACAGAT
droRho1 scf7180000776770:15601-15743 - CTGTACA-----------------T------------------------------------------------------------------A----GATACTCC----TACATATACAT-ATACACA------------CAAAC--AT--ATATATATATATA--TATATAT------------ATATAT---ATATAT---ATGTGTCTTGT-------------TGT------------GC-TGTG--------------AAA------------------CT-----------------A---------------TTCGTTC-------TACTT----------------TTTCTGCTTTGT-------TT-------------AT--------------------TGTTTGAT-------------TTTTTAT--------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302075:5384655-5384813 - AATAAA----------------------------------------------------------TATCTACATATATATC----CA----------------CA----CA-----------CAAACA----CTCTCACACGTAT--ATATACATCTCAATATA--TACACAT------------ATATAAAT---ATTTTAT------------------------TAT--CC--TTGCCTAAGTAAG--------------TA-------------------TT-----------------T---------------TGCCTACTAG-----------------AGAAACCATAAATGTTTTGTTATTG---------------------------------------AGCATGTT-------------GGCTTGT--------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415157:443315-443438 - TGTGT------------------------------------------------------------------------------------GTG----TGTGTG----------------------------------------------------------------------------------------------------------------------------TGC--CC--GTGCGTGCGTGTG--------------TG-------------------TT-----------------T---------------AGTGTTTGTG-----------------CGCGACCCTGCGTGTG-TGTGCGTG---------------------------------------CGTT---------------------TGTGTGCTAAAAAAC-----------AGA----------------------ACGTGCAACAA-----------------------------------GAAGCAAGAAG-AAG-AAGCAG
droEug1 scf7180000409466:3039478-3039635 - ACGAAA------------------------------------------------------------------------------------TC----CATATAAC----ATAACT-------TTCAA------------------------------------GTGCAAAAAA------------GTGTGCGT---GCTGCGT----GCGTGTGTGTTTTGTGTTTGTGC--GA--CTGTGGGCGAGCT--------------T--------------------------------------------------------------------------------------------------GTGTGTGTG---------------------------------------TGTGTGTT-----------GAGTGTAGTAA-----AAAAC-----------AGA----------------------ACGTGCAACAA-----------------------------------GAAGCAAGAAG-AAG-AAGCAG
dm3 chrX:12540908-12541056 + CAAAACCGA-TGAAGAGAAATCATTT--------------------------------------AACTAAGCTAC----AACAC-----ATATATATATATATA----T--ATATATAT-ATATATA------------TATAT--AT--ATATGTATATATA--TGTATATAT----------GTATAT-----ATAT---G-----------------------TAT------------------A--------------TGT------------------AT-----------------A---------------TATACATAAC-----------------TAAAA--ACTTTTATATCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 3r:15652912-15653065 + ATTTACG-----------------T------------------------------------------------AT--ATC----CA----------------CA----CATAAACACAC-C--------------AACACGTAT--ATATACATATCAATATA--TACACATATAT--------ATATACAT---ATTTTAT------------------------TAT--CC--TTGCCTAAGTAAG--------------TA-------------------TT-----------------T---------------GGCCTACTAG-----------------AGAAACCATAAATGTTTTGTTATTG---------------------------------------AGCATGTT-------------GGCTTGT--------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_8:1836293-1836466 + AGCACT-----------------TTCATTTCGCCAGTGGCTGCGCATGCGCAAAACTTTCCCATCATTTATATAT----------------A----TATATATA----TA--TATATAT-A--TATA----------TATATAT--ATATATATATATATATA--TATATAT------------GCATAT-----ATAT---A-----------------------------------------------------------CAACTGTATGT----------AC-----------------A---------------TATACTTATG-----------------TGGAA--------ATTGTGC----------------------------------------ATCGCATGTATT-------------GTG------------------------------------------------------------------------------------------------------------------------
droYak3 v2_chr2h_random_004:902112-902264 + CAGAT------------------------------------------------------------------------------------ATA----TATATATA----TGTATATATAT-GTATATA----TA------TATAT------ATATATATATATA--TATATAT------------ATATAT---ATGTAT---AT---------------------GTAT--AT--ATATATATGTATA--------------TA-------------------TTGAGATAG---ACGACCTT---------------TACATAG-------TGTGT----------------TTTTTTCTTTGT-------TT----------------------------------GTGTATATT-------------ACGTT----------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4770:14883556-14883727 + ACATACA-----------------T------------------------------------------------------------------A----CATACATA----TATATATATAC-ATACATA------------CATAC--AT--ACATATATATATA--TACATATATATATATACATATATATAT---ATATATA------------------------CAT--AT--ATATATATATATA--------------TA-------------------AT-----------------A---------------TATATATTAT-----------------AAAAA--TTGTTAGTTTCAC----------------------------------------ATCACATACACA-------------TCACTACACTACGACATAC-------------------------------------------------------------------------------------------------------A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
ACAAAGCAACCGAAGGGAGCCCCATCAATTAACAAG----------------------------C------------AGC----TATACATA----TACAGCTT----AACATATATAT-T--------------CACATATAT--ATTTATATATCGATATA--TATATAT------------ATATTT---TTGTGT---GT---------------------GTGT--CT--CTGTGTGCGTGCG--------------TGT------------------CT-----------------G---------------TGTGTACTAT-----------------ACAAA--ATTTTTGTTTTGT----------------------------------------TTCGCGTGTGTT-------------GTGTTGTATAACACCACACAGGGAGAGCACAGA----------------GAG---------------------CCAGAGCGAGA-------G-------CGAGA-AGCAGATCAAACAGGATCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................................................................................................................................GTGCG--------------TGT------------------CT-----------------G---------------TGTGTACTAT-----------------ACAAA--.........................................................................................................................................................................................................2612.002000002
........................................................................................................................................................................................ATATTT---TTGTGT---GT---------------------GTGT--CT--CTGT..........................................................................................................................................................................................................................................................................................................................2411.001100000
................................................................................................................................................................................................................................................................................................................................................................ATTTTTGTTTTGT----------------------------------------TTCGCGTGTGTT-------------GT.........................................................................................................................2711.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------------------CCAGAGCGAGA-------G-------CGAGA-AG................2011.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACCACACAGGGAGAGCACAGA----------------G.........................................................................2511.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------GTGTTGTATAACACCACACAGGGAGAGC...............................................................................................2911.001000001
.........................................................................................................................................................................................................................................................................................................................................................................TTGT----------------------------------------TTCGCGTGTGTT-------------GTGT.......................................................................................................................2011.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA----------------GAG---------------------CCAGAGCGAGA-------G-------CGAGA-A.................2311.001100000
...AAGCAACCGAAGGGAGCCCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
...................................................................................................................................................................................................................................................GTGCG--------------TGT------------------CT-----------------G---------------TGTGTACTAT-----------------AC..............................................................................................................................................................................................................2311.001000001
....................................................................................................GCTT----AACATATATAT-T--------------CACAT.............................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-------G-------CGAGA-AGCAGATCAAACA.....2111.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---------------------CCAGAGCGAGA-------G-------CGAGA-AGCAG.............2411.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGAGAGCACAGA----------------GAG---------------------CCAGAGC...........................................2411.001000010
...................................................................................................................................................................................................................................GT--CT--CTGTGTGCGTGCG--------------TGT------------------CT-----------------G---------------TGT........................................................................................................................................................................................................................................2611.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATAACACCACACAGGGAGAGC...............................................................................................2411.001000001
.............................................................................................................................................................................................................................................................................................................................................................A--ATTTTTGTTTTGT----------------------------------------TTCGCGTGTGTT-------------GT.........................................................................................................................2811.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACAGGGAGAGCACAGA----------------GAG---------------------C.................................................2311.001000001
...........................................................................................................................................................................................................................................................................................................................................................................GT----------------------------------------TTCGCGTGTGTT-------------GTGT.......................................................................................................................1811.001100000
....................................................................................................GCTT----AACATATATAT-T--------------CACATATAT--.......................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
droVir3
ACAAAGCAACCGAAGGGAGCCCCAT---------------------------------------CATTTAC------AGC----TATACATA----AACAGCTT-------------------------------AACATATAT--AT--ATA------T--ATACATATAT------------ATATATAT---ATTGTGT----GT------------------GTC--TC--TTGTGTGCGTGTG--------------T--------------------CT-----------------G---------------TGTTTACTAT-----------------ACAAA--ATTTCTGTTTTGT----------------------------------------TTCGCGTGTGTA-------------GTGTTGTATAACAGCACAG---GAGAGCATAGA----------------GAG---------------------AAAGA--GAGA--------------GAGAGA-AACAGATCAAACAGGATCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAACAGCACAG---GAGAGC...............................................................................................2013.003001000000000010000000000000000000000000000000000000000000001000
......................................................................................................................................................................................................................................................................................................................................................................GTTTTGT----------------------------------------TTCGCGTGTGTA-------------GT.........................................................................................................................2113.003001100001000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................ACAAA--ATTTCTGTTTTGT----------------------------------------TTCGCGT.............................................................................................................................................2513.003000000000000000000000000000000000000000000000000000000000000003
........................................................................................................................................................................................................................................................................................................................................................................TTTGT----------------------------------------TTCGCGTGTGTA-------------GTGTT......................................................................................................................2213.003000000000100010000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTATAACAGCACAG---GAGAGC...............................................................................................2313.003000000000000000101000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---GAGAGCATAGA----------------GAG---------------------AAAGA--GA.........................................2412.002000000000000001100000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................A--ATTTCTGTTTTGT----------------------------------------TTCGCGTGT...........................................................................................................................................2312.002001000000001000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................GTC--TC--TTGTGTGCGTGTG--------------T--------------------CT-----------------...........................................................................................................................................................................................................................................................2112.002000000000020000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................A--ATTTCTGTTTTGT----------------------------------------TTCGCGT.............................................................................................................................................2112.002000002000000000000000000000000000000000000000000000000000000000
..................................................................................................CAGCTT-------------------------------AACATATAT--AT--AT.................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000000000000001001000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................TTTGT----------------------------------------TTCGCGTGTGTA-------------GT.........................................................................................................................1912.002000000000000010000000000000000000000000000000000000000000000010
....AGCAACCGAAGGGAGCCCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002001000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCACAG---GAGAGCATAGA----------------G.........................................................................1911.001000000000000000000000000010000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................GTTTTGT----------------------------------------TTCGCGTGTGTA-------------GTGTT......................................................................................................................2411.001000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................TTCTGTTTTGT----------------------------------------TTCGCGTGT...........................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGA--GAGA--------------GAGAGA-AACAGATC..........2111.001000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................A--ATTTCTGTTTTGT----------------------------------------TTCGCGTGTGTA-------------GT.........................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................GTA-------------GTGTTGTATAACAGC............................................................................................................1811.001000000000000000000000000000000001000000000000000000000000000000
ACAAAGCAACCGAAGGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000001000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---GAGAGCATAGA----------------GAG---------------------A.................................................1811.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---GAGAGCATAGA----------------GAG---------------------AAAGA--GA.........................................2311.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................TCTGTTTTGT----------------------------------------TTCGCGTGTGTA-------------GTGT.......................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.....GCAACCGAAGGGAGCCCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000100000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTA-------------GTGTTGTATAACAGC............................................................................................................2211.001000000000000000000000000000000000000100000000000000000000000000
....................................................................................................GCTT-------------------------------AACATATAT--AT--ATA------T--ATACAT.................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000010000000000000000000000000000000000000000000
...................................................................................................................................................................................................ATTGTGT----GT------------------GTC--TC--TTGTGTGCG.....................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000001000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................GCGTGTG--------------T--------------------CT-----------------G---------------TGTTTACT...................................................................................................................................................................................................................................1911.001100000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................CAAA--ATTTCTGTTTTGT----------------------------------------TTCGCGTGTGT.........................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................ATTTCTGTTTTGT----------------------------------------TTCGCGTGTGTA-------------GT.........................................................................................................................2711.001000000000000001000000000000000000000000000000000000000000000000
..........................................................................................TA----AACAGCTT-------------------------------AACATATAT--AT--A..................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCATAGA----------------GAG---------------------AAAGA--G..........................................1811.001000000000000000000000001000000000000000000000000000000000000000
.....................................................................................ATACATA----AACAGCTT-------------------------------AACATATAT--AT--...................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................................................................AT---ATTGTGT----GT------------------GTC--TC--TTGTGT........................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.......AACCGAAGGGAGCCCCAT---------------------------------------C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................C--TTGTGTGCGTGTG--------------T--------------------CT-----------------G---------------TGT........................................................................................................................................................................................................................................2121.002000100000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................TTCTGTTTTGT----------------------------------------TTCGCG..............................................................................................................................................1711.001000000000000000000000000000000000000000000000000000000000000001
..............................................................................................................................................................................................AT---ATTGTGT----GT------------------GTC--TC--TTGTGTGC......................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................TATAT---ATTGTGT----GT------------------GTC--TC--TTGT..........................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000010000000000000000000000000000000000000
...............................................................................................................................................................................................................................................GTGCGTGTG--------------T--------------------CT-----------------G---------------TGTTTACT...................................................................................................................................................................................................................................2111.001000000000001000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATAACAGCACAG---GAGAGC...............................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................AA--ATTTCTGTTTTGT----------------------------------------TTCGCGTGTGTA-------------GT.........................................................................................................................2911.001000100000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................TTTGT----------------------------------------TTCGCGTGTGTA-------------GTGT.......................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
...........................................................................................................................................................................................................................................................................................................................................................................GT----------------------------------------TTCGCGTGTGTA-------------GTGTT......................................................................................................................1911.001000000000000010000000000000000000000000000000000000000000000000
..........................................................................................TA----AACAGCTT-------------------------------AACATATAT--AT--AT.................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................ATTGTGT----GT------------------GTC--TC--TTGTGTGC......................................................................................................................................................................................................................................................................................................................2211.001000000000001000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-AACAGATCAAACAGGATC2011.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................ATTTCTGTTTTGT----------------------------------------TTCGCG..............................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
......CAACCGAAGGGAGCCCCAT---------------------------------------A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000001
........................................................................................................................................................................................................GT----GT------------------GTC--TC--TTGTGTGCGTGTG--------------T--------------------CT-----------------G---------------T..........................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.......AACCGAAGGGAGCCCCAT---------------------------------------CAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000010000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................C--TC--TTGTGTGCGTGTG--------------T--------------------C.............................................................................................................................................................................................................................................................................1811.001000000000000000100000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAG---------------------AAAGA--GAGA--------------GAGAGA-AACAGAT...........2511.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTATAACAGCACAG---GAGAGCATAGA----------------GAG---------------------AAAT..............................................3511.001000000000000000000000000000000000000000000000000000000000010000
.......................................................................................................................................................................................................................................................................................................................................................................TTTTGT----------------------------------------TTCGCGTGTGTA-------------GT.........................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TTGTGTGCGTGTG--------------T--------------------CT-----------------G---------------TGTTTACTAT-----------------................................................................................................................................................................................................................2711.001000000000000000000000000000000100000000000000000000000000000000
........ACCGAAGGGAGCCCCAT---------------------------------------CATTTAC------A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000010000000000000000000000000000000000000000000000
......................................................................................TACATA----AACAGCTT-------------------------------AACATATAT--AT--...................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTATAACAGCACAG---GAG..................................................................................................2011.001000000000000000000000000000000001000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGA--GAGA--------------GAGAGA-AACAGATC..........2211.001000000000000010000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................CGCGTGTGTA-------------GTGTTGTATAAC...............................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
...............................................................................C----TATACATA----AACAGCTT-------------------------------AACATATAT--.......................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000001000000000000000000000000000000
...................................................................TTAC------AGC----TATACATA----AACAGCTT-------------------------------A.................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
.....................................................................................ATACATA----AACAGCTT-------------------------------AACATATAT--AT--AT.................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACAG---GAGAGCATAG...........................................................................................1811.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA--GAGA--------------GAGAGA-AACAGATCAA........2211.001000000000000000000000000100000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................AAA--ATTTCTGTTTTGT----------------------------------------TTCGCGTGT...........................................................................................................................................2511.001000000000000000000000000000000000000010000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGA--GAGA--------------GAGAGA-AACAGATCAAACA.....2711.001000000000000000010000000000000000000000000000000000000000000000
.......................................................................................................T-------------------------------AACATATAT--AT--ATA------T--ATACATA................................................................................................................................................................................................................................................................................................................................................................................................2320.501000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------------------AAAGA--GAGA--------------GAGAGA-AACAG.............2120.501000000000000010000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATAGA----------------GAG---------------------AAAGA--GAGA--------------GAGA.....................2320.501000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................TGTGCGTGTG--------------T--------------------CT-----------------G---------------TGTT.......................................................................................................................................................................................................................................18100.101000000000000000000000000010000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGA-AACAGATCAAACACA...18200.051000000000000000000000000100000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGA--GAGA--------------GAGAGA-AACAG.............18200.051000000000000010000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................GTGTGCGTGTG--------------T--------------------CT-----------------G---------------TGT........................................................................................................................................................................................................................................18200.051000000000000010000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--GAGA--------------GAGAGA-AACAG.............16200.051000000000000000000000000000000000000000000000000000000000000001
droGri2
ACAAAGCAACCGAAGGGATCCCCAT---------------------------------------CATTTGCATAT----ACTCC---------------GTCT------A-----------------------------TATAT--AC--ACA------T--ATACAGATAT--AT--------AGATATATTTTGTGT---GT---------------------GTGT--CT--CTGTGTGCGTGTG--------------TC-------------------CT-----------------G---------------TGTGTACTAT-----------------ACAAA--ATTTCTGTTTTGT----------------------------------------TTCGCGTGTGTG-----------GAGTGTTGTCTAACAACACAG----------AAGAGGGA--------AAGAGAT---------------------ACATA--TAGAGTTATCAGCAGG--------------ATCAAA--TAAGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAG----------AAGAGGGA--------AAGAGAT---------------------..................................................1911.00101
..........................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTG-----------GAGTGTTGTCTA.................................................................................................................1911.00110
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAG----------AAGAGGGA--------AAGAGAT---------------------ACA...............................................2411.00101
...........................................................................................................................................................................................................................................................................................................................................................................GT----------------------------------------TTCGCGTGTGTG-----------GAGTGTTGTC...................................................................................................................2411.00110
........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACACAG----------AAGAGGGA--------AAGAGAT---------------------AC................................................2611.00110
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGAT---------------------ACATA--TAGAGTTATCA................................2311.00101
.......AACCGAAGGGATCCCCAT---------------------------------------CATTTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGGA--------AAGAGAT---------------------ACATA--...........................................1911.00110
..........................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTG-----------GAGTGTTGTCTAACAA.............................................................................................................2311.00101
..............................................................................................................................................................................................ATTTTGTGT---GT---------------------GTGT--CT--C.............................................................................................................................................................................................................................................................................................................................1811.00110
................................................................CATTTGCATAT----ACTCC---------------GTCT------............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110
.......................................................................................................................................................................................................................................CT--CTGTGTGCGTGTG--------------TC-------------------CT-----------------G---------------TGTG.......................................................................................................................................................................................................................................2411.00101
...................................................................................................................................................................................................GTGT---GT---------------------GTGT--CT--CTGTGTGC......................................................................................................................................................................................................................................................................................................................2020.50110
droWil2
ACCATTT-----------------A------------------------------------------------------------------A----AATTCATT----TGTTTATATTGACTTAATAGATGATTTCATTGACGT------ATTTCTCTATATA--TATGTAT------------GTATGT---TTGTGT---TT---------------------GTGT--AA--GTGTGTGGGTGGGTATTAGCGTGTGTGTC----------------------------------------------------------------------------------------ACTTTGATT--------------------------ACT--------------TTTCCCTTTTGCT-------------ATGTT------------------AAACAAAAGGGTTCAATGC-A-A------AGAGTCGTAGATAA-----------------------------------GAGTAGAGAGT-AGG-AGAAACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................TTGTGT---TT---------------------GTGT--AA--GTGTGTGGGT....................................................................................................................................................................................................................................................................................................................2411.00100010
dp5
TATAC------------------------------------------------------------------------------------ATA----CATACATT----AACACACACAT-ATATAT------------------------------------ATACATATAT------------GTATGGGT---ATTGTGT----GTGTGTTTGCTGTGGGTATAT----GGGTGGATG-----------------------------------------------------------------------------------------------------------------GGTCCGCTTTGT-------TTAAAGTAG----------------------------AGCGTGCG-------------TATTTAT--A---------AGGCAAACAACAGAGGAA--------C------CCA-----------G------CCAGAGCCCCA-------GCCAGAAC----------------CCAGAACCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
ATAC-------------------------------------------------------------------------------------ATA----CATACATTAACACA--CAAACAC-ATATATA------------TATAT--AT--ATATATATATATA--TATATAT------------ATATGGGT---ATTGTGT----GTGTGTTTGCTGTGGGTATAT----GGGTGGATG-----------------------------------------------------------------------------------------------------------------GGTCCGCTTTGT-------TTAAAGTAG----------------------------AGCGTGCG-------------TATTTAT--A---------AGGCAAACAACAGAGGAA--------C------CCA-----------G------CCAGAGCCCCA-------GCCAGAAC----------------CCAGAACCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
TGTAT------------------------------------------------------------------------------------GTA----TATAG-------T--ATATGCAT-ATGTATT--------GCCGTATGTATGT--AAATAATCGTATA--TATATAT------------ATTATT---TTCCAT---TT---------------------AAGA--TA--TCCAGCTAGCAGG--------------TTC--------TCTTTTGAAATT------CGGAACGCGCTTTAGGAACCGCAGAAATTCTTTT-------TATTTTTTT---------TCGCAA-----ATAT-------TT-------------CT--------------------TGTATAAT-------------ATATTGT-------TAGAA--------AGAGAGATTT-----AGA----GAGAGAGTGAGAGAG-----------------------------------AGAGA-GGGGGATAGGA-AAGGATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTGAGAGAG-----------------------------------AGAGA-G.................18200.051010000
droBip1
TATGT------------------------------------------------------------------------------------ATA----TGTATATG----TATATGTATAT-GTATATG----TA------TATGT------ATATGTATATGTA--TATGTAT------------ATGTAT---ATGTAT---AT---------------------GTAT--AT--GTATATGTATATGTATATGTATATGTATA---------------------------------------------------------------T-----------------G-------TATATGT---------------------------ATTATTTAAT--------TT------------------------------------------------------------------------------------------------------------------------------------------------TGSizeHit CountTotal NormTotal
No Reads
droKik1
ATATATA-----------------T------------------------------------------------------------------A----TATATATA----TATATATATTT-ATATATA------------TATTT--AT--ATATATATTTATA--TATATAT------------ATATTT---ATATAT---A-----------------------TATATTT--ATTTATTTATATG------------------------------------------------------------------------------------TATATTTTTTTATG-------TAT----------------AA-------GTGTTTATTAATTAATGTATGTC---TAAGTGTATG-------------TTAC-AGACTAC--C--------AA-----------------------------------------------------------------------------------------------ATASizeHit CountTotal NormTotal
No Reads
droFic1
AACAAA----------------------------------------------------------TATTTACATATATATC----CA----------------CA----CA-----------TAAACA----CACCCACACGTAT--ATATACATATCAATATA--TACACAT------------ATATAAAT---ATTTTAT------------------------TAT--CC--TTGCCTAAGTAAG--------------TA-------------------TT-----------------T---------------TGCCTACTAG-----------------AGAAACCATAAATGTTTTGTTATTG---------------------------------------AGCATGTT-------------GGCTTGT--------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AGCTC------------------------------------------------------------------------------------AAG----CAGGTATA----TA-----------------------------TATGT----------ATATATATA--TATATAT------------ATATATAT---ATTATATATCTGTCTGCTTGCTCTGTGTTTTT--------------------------------------------------------------------------------------------GACAGCTGCTGAACAT----------G-AAA----ATGAGTTTTCTTCTTCGACT-------------GCT--------------TTTTATGCCAGTCAAGCCAAATAAAAATAATAA-------TAAAA--------TCAGCGCAAT-----AAG----CAAGCAATGAAAGCG--GCAAAAGCGAAAGCGAGA--------------CCGAGA-ATCGATTTATACACAGATSizeHit CountTotal NormTotal
No Reads
droRho1
CTGTACA-----------------T------------------------------------------------------------------A----GATACTCC----TACATATACAT-ATACACA------------CAAAC--AT--ATATATATATATA--TATATAT------------ATATAT---ATATAT---ATGTGTCTTGT-------------TGT------------GC-TGTG--------------AAA------------------CT-----------------A---------------TTCGTTC-------TACTT----------------TTTCTGCTTTGT-------TT-------------AT--------------------TGTTTGAT-------------TTTTTAT--------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
AATAAA----------------------------------------------------------TATCTACATATATATC----CA----------------CA----CA-----------CAAACA----CTCTCACACGTAT--ATATACATCTCAATATA--TACACAT------------ATATAAAT---ATTTTAT------------------------TAT--CC--TTGCCTAAGTAAG--------------TA-------------------TT-----------------T---------------TGCCTACTAG-----------------AGAAACCATAAATGTTTTGTTATTG---------------------------------------AGCATGTT-------------GGCTTGT--------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TGTGT------------------------------------------------------------------------------------GTG----TGTGTG----------------------------------------------------------------------------------------------------------------------------TGC--CC--GTGCGTGCGTGTG--------------TG-------------------TT-----------------T---------------AGTGTTTGTG-----------------CGCGACCCTGCGTGTG-TGTGCGTG---------------------------------------CGTT---------------------TGTGTGCTAAAAAAC-----------AGA----------------------ACGTGCAACAA-----------------------------------GAAGCAAGAAG-AAG-AAGCAGSizeHit CountTotal NormTotal
No Reads
droEug1
ACGAAA------------------------------------------------------------------------------------TC----CATATAAC----ATAACT-------TTCAA------------------------------------GTGCAAAAAA------------GTGTGCGT---GCTGCGT----GCGTGTGTGTTTTGTGTTTGTGC--GA--CTGTGGGCGAGCT--------------T--------------------------------------------------------------------------------------------------GTGTGTGTG---------------------------------------TGTGTGTT-----------GAGTGTAGTAA-----AAAAC-----------AGA----------------------ACGTGCAACAA-----------------------------------GAAGCAAGAAG-AAG-AAGCAGSizeHit CountTotal NormTotal
No Reads
dm3
CAAAACCGA-TGAAGAGAAATCATTT--------------------------------------AACTAAGCTAC----AACAC-----ATATATATATATATA----T--ATATATAT-ATATATA------------TATAT--AT--ATATGTATATATA--TGTATATAT----------GTATAT-----ATAT---G-----------------------TAT------------------A--------------TGT------------------AT-----------------A---------------TATACATAAC-----------------TAAAA--ACTTTTATATCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................................GTATATATA--TGTATATAT----------GTA..............................................................................................................................................................................................................................................................................................................................................................................2160.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
.......................................................................................................................................................................TATATAT----------GTATAT-----ATAT---G-----------------------TA.....................................................................................................................................................................................................................................................................................................................................20200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................T--AT--ATATGTATATATA--TGTA................................................................................................................................................................................................................................................................................................................................................................................................20200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................TATATATATATA----T--ATATA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................ATATGTATATATA--TGTATATA............................................................................................................................................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................TATATATA--TGTATATAT----------GTA..............................................................................................................................................................................................................................................................................................................................................................................20200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
..........................................................................................................................................................................ATAT----------GTATAT-----ATAT---G-----------------------TAT------------------A--------------TG.................................................................................................................................................................................................................................................................................................2190.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................TATATATA----T--ATATATAT-ATA..............................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................T--ATATGTATATATA--TGTATATA............................................................................................................................................................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................ATATATATATATATA----T--AT........................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................GTATATAT----------GTATAT-----ATAT---G-----------------------.......................................................................................................................................................................................................................................................................................................................................19120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................TAT-----ATAT---G-----------------------TAT------------------A--------------TGT------------------AT-----------------A---------------TATA.......................................................................................................................................................................................................................................22160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................TATAT--AT--ATATGTATATATA--T...................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................ATATATA--TGTATATAT----------GTAT.............................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................TATGTATATATA--TGTATATA............................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................T--AT--ATATGTATATATA--TGTAT...............................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................TATATAT----------GTATAT-----ATAT---G-----------------------TAT------------------..................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................T-----ATAT---G-----------------------TAT------------------A--------------TGT------------------AT-----------------A---------------TA.........................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................TATA------------TATAT--AT--ATATGTATAT.........................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ATTTACG-----------------T------------------------------------------------AT--ATC----CA----------------CA----CATAAACACAC-C--------------AACACGTAT--ATATACATATCAATATA--TACACATATAT--------ATATACAT---ATTTTAT------------------------TAT--CC--TTGCCTAAGTAAG--------------TA-------------------TT-----------------T---------------GGCCTACTAG-----------------AGAAACCATAAATGTTTTGTTATTG---------------------------------------AGCATGTT-------------GGCTTGT--------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................................................................................................................................................................................................ATTG---------------------------------------AGCATGTT-------------GGCTTG.....................................................................................................................1811.00110000000000000000
droSec2
AGCACT-----------------TTCATTTCGCCAGTGGCTGCGCATGCGCAAAACTTTCCCATCATTTATATAT----------------A----TATATATA----TA--TATATAT-A--TATA----------TATATAT--ATATATATATATATATA--TATATAT------------GCATAT-----ATAT---A-----------------------------------------------------------CAACTGTATGT----------AC-----------------A---------------TATACTTATG-----------------TGGAA--------ATTGTGC----------------------------------------ATCGCATGTATT-------------GTG------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CAGAT------------------------------------------------------------------------------------ATA----TATATATA----TGTATATATAT-GTATATA----TA------TATAT------ATATATATATATA--TATATAT------------ATATAT---ATGTAT---AT---------------------GTAT--AT--ATATATATGTATA--------------TA-------------------TTGAGATAG---ACGACCTT---------------TACATAG-------TGTGT----------------TTTTTTCTTTGT-------TT----------------------------------GTGTATATT-------------ACGTT----------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
ACATACA-----------------T------------------------------------------------------------------A----CATACATA----TATATATATAC-ATACATA------------CATAC--AT--ACATATATATATA--TACATATATATATATACATATATATAT---ATATATA------------------------CAT--AT--ATATATATATATA--------------TA-------------------AT-----------------A---------------TATATATTAT-----------------AAAAA--TTGTTAGTTTCAC----------------------------------------ATCACATACACA-------------TCACTACACTACGACATAC-------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/17/2015 at 11:24 PM