ID:

dmo_949

 Coordinate:

scaffold_6496:3393840-3393887 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-2.4 -2.3 -2.1

Flybase annnotation

intron [Dmoj\GI19958-in]; exon [dmoj_GLEANR_4851:8]; exon [dmoj_GLEANR_4851:9]; CDS [Dmoj\GI19958-cds]; CDS [Dmoj\GI19958-cds]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey+
mature
  1. scaffold_6328:2287480-2287500 +
  2. scaffold_6473:6931183-6931203 +
  3. scaffold_6473:7256014-7256034 +
  4. scaffold_6473:7256359-7256379 +
  5. scaffold_6473:9960748-9960768 +
  6. scaffold_6473:14907144-14907164 +
  7. scaffold_6496:2797861-2797881 +
  8. dmo_949  scaffold_6496:3393844-3393864 +
  9. scaffold_6496:7576057-7576077 +
  10. scaffold_6496:19027154-19027174 +
  11. scaffold_6498:203064-203084 +
  12. scaffold_6498:1120091-1120111 +
  13. scaffold_6500:2413181-2413201 +
  14. scaffold_6500:22925244-22925264 +
  15. scaffold_6540:1514113-1514133 +
  16. scaffold_6540:24059201-24059221 +
  17. scaffold_6540:30037157-30037177 +
  18. scaffold_6680:3272831-3272851 +
  19. scaffold_6680:12713194-12713214 +
  20. scaffold_6680:16834017-16834037 +
star

Sense Strand Reads

##################################################------------------------------------------------##################################################
CTTCCAAGTCCGGCTCGAAGGATCAGCGTGACGGCAATGGCAACAACATCATCAACAACAGCAGCAGCAACAACAACAGCAGCAACAGCAATGTCAACGGCAACGGCAACGGCATGAGCACGCTCAGCCAGAAGAAGACATCGATGAT
**************************************************....(((...((.((.((..........)).))....))..)))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M060
embryo
 M046
female body
 V041
embryo
..GCCAACTCCGGCTCGAAGGACCA........................................................................................................................... 23 3 10 0.20 2 1 1 0
....CAAATCCGGCTCGAAGGACCAG.......................................................................................................................... 22 2 5 0.20 1 0 1 0
........TCCGGCTCGAAGGACCAG.......................................................................................................................... 18 1 20 0.20 4 0 4 0
...CCAAATCCGGCTCGAAGGA.............................................................................................................................. 19 1 7 0.14 1 1 0 0
.....AAGTCCGGCTCGAAGGACCA........................................................................................................................... 20 1 9 0.11 1 0 1 0
........................................CAACAACCTCTTCAACAACAGCAGC................................................................................... 25 2 10 0.10 1 0 0 1
......................................................ACAACAGCAGCAGCAACAACA......................................................................... 21 0 20 0.10 2 0 2 0
.........................................................ACAGCAGCAGCAACAACAACAGC.................................................................... 23 0 20 0.10 2 2 0 0
....CAATTCCGGCTCGAAGGACCA........................................................................................................................... 21 2 11 0.09 1 1 0 0
...................................................TCAACAACAGCAGCAGCAACAACAACA...................................................................... 27 0 12 0.08 1 0 1 0
...................................................TCAACAACAGCAGCAGCAACAAC.......................................................................... 23 0 16 0.06 1 1 0 0
......AGTCCGGCTCGAAGGACCA........................................................................................................................... 19 1 19 0.05 1 1 0 0
......AGTCCGGCTCGAAGGACC............................................................................................................................ 18 1 19 0.05 1 1 0 0
.........................................................ACAGCAGCAGCAACAACAAC....................................................................... 20 0 20 0.05 1 0 0 1
.......................................................CAACAGCAGCAGCAACAACAACAGCAG.................................................................. 27 0 20 0.05 1 1 0 0
..................................................ATCAACAACAGCAGCAGC................................................................................ 18 0 20 0.05 1 1 0 0
............................................................GCAGCAGCAACAACAACAGCAGCAC............................................................... 25 1 20 0.05 1 1 0 0
.....................................................AACAACAGCAGCAGCAAC............................................................................. 18 0 20 0.05 1 0 1 0
.....CAGTCCGGCTCGAAGGACC............................................................................................................................ 19 2 20 0.05 1 1 0 0
......................................................ACAACAGCAGCAGCAACAACAACAGCA................................................................... 27 0 20 0.05 1 1 0 0
...........................................................AGCAGCAGCAACAACAACAGCAGCAACAG............................................................ 29 0 20 0.05 1 1 0 0
...................................................TCAACAACAGCAGCAGCAACA............................................................................ 21 0 20 0.05 1 0 1 0
.....................................................................ACAACAACAGCAGCAACA............................................................. 18 0 20 0.05 1 1 0 0
.................................................................AGCAACAACAACAGCAGCAACAGC........................................................... 24 0 20 0.05 1 1 0 0

Anti-sense strand reads

GAAGGTTCAGGCCGAGCTTCCTAGTCGCACTGCCGTTACCGTTGTTGTAGTAGTTGTTGTCGTCGTCGTTGTTGTTGTCGTCGTTGTCGTTACAGTTGCCGTTGCCGTTGCCGTACTCGTGCGAGTCGGTCTTCTTCTGTAGCTACTA
**************************************************....(((...((.((.((..........)).))....))..)))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total V049
head
 V110
male body
..............AGCTTCCAATTGGCACTGC................................................................................................................... 19 3 8 0.13 1 1 0
.....................................................TTGTTGTCGTCGTCGTTGTTGTTG....................................................................... 24 0 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6496:3393790-3393937 + dmo_949 CTT--------CC----AAGTCCGGCT---C----------------GA-----AG---GAT-------------------C-----------------------------A--GC----GTGACGGCAATGGCAACAACAT------CATCAACAACAGCAGCAG---------C---------------AA---CAACAA---------CAGCAGCAACAG------CAATG------------TCAACGGCAACGGCA---AC---G------GCA------------------TGAGC---ACG---CTCAGC----------------CAGAAGAAGACAT-----CGATGAT
droVir3 scaffold_12823:589206-589326 - CCT--------CC----AAGTCCAGCG---C----------------CA-----AG---GAT-------------------C-----------------------------A--AC----GCGACGGCAATGG---------CAACAA---------------CAT------AAT---CAGCAACATGAA------C---------------------G---GCAACGGCAGCAGCAACGG------------------------------------CA------------------TCACC---ACG---CTCAGC----------------CAGAAAAAGACTT-----CGATGAT
droGri2 scaffold_15203:3044856-3045004 - CAT--------GA----GAGTCAGGCA---C----------------GC-----AT---GAA---------------ACAGCAGCAGC--------------------A--GCAGCAG---CAG---CAGCA---AC---------------AACAGCAGCAGCAG---CAACAGC---------------AA---CAT------------C------A---ACAGCAGCAACAGCAGCAG------CA------A------CTGCAGCA------GCAGCA---------------GCAGC---ATT---TAAAATCAAAGG-----------------ACAGAA-----CGCTGAA
droWil2 scf2_1100000004515:859264-859401 + GCT--------C-----------AA-------------------CAGC------AGCAG----------------------CAGCAGCAGC----------------------AGCAGC---------------AACAGCAA------CAACAACAACAGCAGCAG---------C---------------AA---CAACAA---------CAGCAGCAGCAG------CAGGC------------TCAACAACACCATCA---AC---A------GCAGCA------AC------ATCATG---GCA---CACAGC--------------------AGCAA--CA-----TCATGGT
dp5 3:17121350-17121482 + CGG--------GC----AAGAAGGGCT---C----------------GG-----GG---CAAGGA-------------------CTCA-----------A---GG---ATCA--GC----GGGATGGCAATGG---------CAACAA---------------CAT------TAA---CATCATCAACAA------T---------------------A---ACAACAACAGCAACGGAGG------------------------------------CA------------------TGAGC---ACG---CTCAGC----------------CAAAAGAAGACCT-----CGATGAT
droPer2 scaffold_5:813619-813766 - CAA----------------GTGCGGCA---C--AGCT---CCAAAAGC------AGCAG----------------------CAACAGC--------------------A--G---C---AGCAGC---------AACAACAG------CAGCAACAGCAGCAGCAG---------C---------------AA---CAACAA---------CAGCAGCA---G------CAACA------G------CAGCAGCAA------------CAGCAGCAGCAACA------AC------AGCA------------GCAGC-----------------A---GCA-ACAG-CAGTCGATGGC
droAna3 scaffold_12929:1995986-1996120 + GCC--------------------GG-------------------CAGC------AACAG----------------------CAGCAGCAGC----------------------AACAGC---------------AACAGCAG------CAGCAACAACAGCAGCAG---------C---------------AA---CAACAG---------CAACAGCAACAG------CAATG------------CCGACAGCAACAGCA---AC---A------GCA------------------GCAAC---ATG---AGCAGC-AAACA-----------------CAGCAA-----CAGCAAC
droBip1 scf7180000396640:11919-12058 + AGC------------------ATGGCC---C----------------GA-----AA---CAA-------------------CAACTGG--------------------A--G---C---AGCGGC---------AGCAACGC------CAGCAACAGCCGCTGCAG---------C---------------AA---CATCAA---------CAGCAGCA---G------CAACA------T------CAAAACCAG------------CAACAGATGATGCA---------------CCAGC---GAG---CGCAAC----------------AACAAAATGGCCA-----AGAAGGA
droKik1 scf7180000302406:227063-227189 + CCA---------------AGCCCAG-----------------------------------------------------------CAGC--------------------A--GCACC---AGCAA------------CAGCAC------CAGCAACAGCAGCACCAG---------CAGCAGCAACAGCAG---------------------------CA---G------CAACA------A------CAGCAGCAA------------CAGCAACAGCAGCA---------------TCTTC---ATG---CCCAGC-----------------AGTTGCAGGC-------CCAGTTG
droFic1 scf7180000453927:1291819-1291960 + CAA----------------CTCCAGCA---C----------------C------AG---CAT-------------------CAGCAGCAGC----------------------AGCAGC---------------AACAGCAG------CATCAACAACAGCAGCATCAGCAACTCC---------------AA---C------------------ATCAACAG------CAGCA------------TCAGCAGCAGCAGCA---TC---A------GCAGCATCAACAGCAGCAACATCA----------------------A-----------------CAACAT-----CAGCAAC
droEle1 scf7180000491006:1280978-1281119 + CTT--------CT----CAGCGCAACT---G----------------C----------------------------------AGCAGC--------------------A--GCAGC------AACAACAGCA---GC------------AGCAA---CATGCCGCC---------------CAACAGCAG------------------CAGC------A---ACAACAGCAGCAGCAGCAGCATCATCAAGCGCATCCG---CAGCAA---------GT------------------GCAGA---TCA---TT-----CAGCA-----------------GGGCGC-----CGGTGGT
droRho1 scf7180000766799:4385-4530 + CGA--------GC----AATTG---TTTGGTTCAGGTAGC--------------AG-------------------------------A---GAACGTCGCCCAGCAGCA--ACATC---ATCAG------------C------------------------AGCAC---CAGCAGC---------------AACAGC---AC---------CAGCAGCAACATCA---GC----------------------TCATCA---GCAACAA---------CTGCATGAAAACC-------GC------AG-----GCATT-GAGGA-----------------CGACGT-----TGCCGCC
droBia1 scf7180000302136:3227282-3227430 - CAG----------------GGCCAGCT---C----------------AT-----AG---CCA-------------------C-----------------------------C--AC----GCAACAACAACAG---------CAGCAA---------CAGCCCATC---------CAGCAGCAGCAGCAGCAACAAC---AA---------CAGCAGCAACAG------CAACC------A------CAGCCTCTCCA---GCAGCAA---------CA------------------ACATCGATTCGTTAGCAATGCCGGAG--------------------TCA-----CAATGCC
droTak1 scf7180000415211:140958-141089 + TCTAGTCCCAAGAAGCAAGCGATGGCC---C--AG---------CAGC------AACAG----------------------CAGCAGCAAC----------------------AGCAG------------------CAGCAG------CAGCAACAGCAGCAGCAG---------CAGCAGCAACAGCAG------C---------------------A---G------CAACA------G------CA------------GCAGCAACAGCAGCAGCA---------------------------GCA------------------------------------------TCGTCAA
droEug1 scf7180000409209:58265-58412 + CAT--------CC----AGCGGCGACG---C----------------GT-----TG---CATGTG----------------CAGCACC--------------------A--GCAGCAG---CAA---CAGCA---AC------------AGCAA---CAGCAGGA---------------------------ACATC---AA---CAGCAGC------A---ACAGCAGCAGCAGCAACAG------CA------------GCAACAACAGCAGCA---------------------GC------AGGATACGAAAACGAGGA-----------------TGACAA-----CGACCAC
dm3 chr3R:3992955-3993107 - CCA--------AG----CAGCGCGA--AGGTACAGCCAGC-----ACCACTAATTCCA---GCTCCAACTCTAGCAGC---AGTCA----------------------------GC---AGCAGCAA---------CAACAGCAGCAA---------------CAG------CAG---CAGCAGCAGCAA------C---------------------------A---GCAA-A------------------GTA------GCAGCAA---------CA------------------CCACC---G------CCAGC-----------------AGCA--ACACATCCGCCTCGTCCT
droSim2 x:3663655-3663806 + CTC--------CA----GAGTCCGCCA--------------------CATCAGCCGCAT---CT-CAATCCTCACGGT---CATCA----------------------------CC---AGCAA------------C---------------AACAGCAGCAGCAG---CAACAGC---------------AACAGC---AGCAGCAGCAAC------A---ACAACAGCAGCAGCAACAG------CA------------GCAAC------------------------------AT-------ACG---TTGCAC----------------CAGCAGAGAGGAC-----CCTTCAT
droSec2 scaffold_1:3728039-3728182 - CAT--------CC----AGCGACGACG---C----------------GT-----TG---CATGTG-------------------CAG----------------------------C---AGCAGCAG---------CAACAGCAGCAA---------------CAT------CAG---CAGCAGCAGCAA------C---------------------A---G------CAACA------G------CA------------GCAACAACAGCAGCAGC---------------------------AGGATACGAAAACGAGGATGACAACGACCACAGGCAAACGC-----GGAGGAC
droYak3 2L:18747290-18747434 - CAT--------CC----AGCGGCGACG---C----------------GT-----TG---CATGTG--------------------------------------------------C---AGCAA------------C---------------AACAGCAGCAGCAA---CAGCAGC---------------AGCAAC---AT---------CAGCAGCAACAG------CAACA------G------CA------------GCAACAACAGCAGCAGCA---------------------------GGATACGAAAACGAGGATGACAACGACCACAGGCAAAC-------GCGGAGT
droEre2 scaffold_4784:3897989-3898135 - CAT--------CA----CAGTGCGGCC---G----------------CAGTGGCCGCTG----------------------CTGCGGC---AGCCGCCGT--------------------CCAT------------CAGCAT------CAGCAACAGCAGCAGGTG---------CAGCAGCAGCAGCAGCAGCACC---------------------A---T------------------------CAGCAGCAG------CAGCAA---------CAGCAGCA---CC------AGCAGC---AGGTT----------------------------GCT-GCCG-T---TGCGATG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
CTT--------CC----AAGTCCGGCT---C----------------GA-----AG---GAT-------------------C-----------------------------A--GC----GTGACGGCAATGGCAACAACAT------CATCAACAACAGCAGCAG---------C---------------AA---CAACAA---------CAGCAGCAACAG------CAATG------------TCAACGGCAACGGCA---AC---G------GCA------------------TGAGC---ACG---CTCAGC----------------CAGAAGAAGACAT-----CGATGATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................ACAACAGCAGCAG---------C---------------AA---CAACA.............................................................................................................................................................21200.102200000
............................................................................................................................................................ACAGCAGCAG---------C---------------AA---CAACAA---------CAGC...............................................................................................................................................23200.102000020
......................................................................................................................................................TCAACAACAGCAGCAG---------C---------------AA---CAACAA---------CA.................................................................................................................................................27120.081100000
......................................................................................................................................................TCAACAACAGCAGCAG---------C---------------AA---CAAC..............................................................................................................................................................23160.061000010
............................................................................................................................................................ACAGCAGCAG---------C---------------AA---CAACAA---------C..................................................................................................................................................20200.051010000
..........................................................................................................................................................CAACAGCAGCAG---------C---------------AA---CAACAA---------CAGCAG.............................................................................................................................................27200.051000010
.....................................................................................................................................................ATCAACAACAGCAGCAG---------C---------------.......................................................................................................................................................................18200.051000010
...............................................................................................................................................................GCAGCAG---------C---------------AA---CAACAA---------CAGCAGCAC..........................................................................................................................................25200.051000010
........................................................................................................................................................AACAACAGCAGCAG---------C---------------AA---C.................................................................................................................................................................18200.051100000
.........................................................................................................................................................ACAACAGCAGCAG---------C---------------AA---CAACAA---------CAGCA..............................................................................................................................................27200.051000010
..............................................................................................................................................................AGCAGCAG---------C---------------AA---CAACAA---------CAGCAGCAACAG------.................................................................................................................................29200.051000010
......................................................................................................................................................TCAACAACAGCAGCAG---------C---------------AA---CA................................................................................................................................................................21200.051100000
................................................................................................................................................................................................A---CAACAA---------CAGCAGCAACA........................................................................................................................................18200.051000010
....................................................................................................................................................................AG---------C---------------AA---CAACAA---------CAGCAGCAACAG------C................................................................................................................................24200.051000010
droVir3
CCT--------CC----AAGTCCAGCG---C----------------CA-----AG---GAT-------------------C-----------------------------A--AC----GCGACGGCAATGG---------CAACAA---------------CAT------AAT---CAGCAACATGAA------C---------------------G---GCAACGGCAGCAGCAACGG------------------------------------CA------------------TCACC---ACG---CTCAGC----------------CAGAAAAAGACTT-----CGATGATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................GCAACGGCAGCAGCAACGG------------------------------------C................................................................................2030.331000000000000010000000000000000000000000000000000000000000000000
droGri2
CAT--------GA----GAGTCAGGCA---C----------------GC-----AT---GAA---------------ACAGCAGCAGC--------------------A--GCAGCAG---CAG---CAGCA---AC---------------AACAGCAGCAGCAG---CAACAGC---------------AA---CAT------------C------A---ACAGCAGCAACAGCAGCAG------CA------A------CTGCAGCA------GCAGCA---------------GCAGC---ATT---TAAAATCAAAGG-----------------ACAGAA-----CGCTGAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..............................................................................................................................................................................GC---------------AA---CAT------------C------A---ACAGCAGCAACA............................................................................................................................21190.05101
...................................................................................................................CAG---CAG---CAGCA---AC---------------AACAGC........................................................................................................................................................................................................19200.05110
droWil2
GCT--------C-----------AA-------------------CAGC------AGCAG----------------------CAGCAGCAGC----------------------AGCAGC---------------AACAGCAA------CAACAACAACAGCAGCAG---------C---------------AA---CAACAA---------CAGCAGCAGCAG------CAGGC------------TCAACAACACCATCA---AC---A------GCAGCA------AC------ATCATG---GCA---CACAGC--------------------AGCAA--CA-----TCATGGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................................ACAA---------CAGCAGCAGCAG------CA...............................................................................................................................18200.45900090
............................................................................................................................................................ACAGCAGCAG---------C---------------AA---CAACA.............................................................................................................................................................18200.35700070
......................................................................................................................................................................................................ACAA---------CAGCAGCAGCAG------CAGGC------------................................................................................................................2150.20100001
............................................................................................................................................................ACAGCAGCAG---------C---------------AA---CAACAA---------CAGC...............................................................................................................................................23200.15300030
....................................................................................................................................................................AG---------C---------------AA---CAACAA---------CAGCAGCA...........................................................................................................................................19200.15300030
.............................................................................................................................................A------CAACAACAACAGCAGCAG---------C---------------AA---C.................................................................................................................................................................23200.10200020
........................................................................................................................................CAGCAA------CAACAACAACAGCAGCAG---------C---------------.......................................................................................................................................................................25200.10201001
..............................................................................................................................................................AGCAGCAG---------C---------------AA---CAACAA---------CAGCA..............................................................................................................................................22200.10200020
.....................................................................................AGCAGC----------------------AGCAGC---------------AACAGCAA------CAA...............................................................................................................................................................................................................23200.10200020
........................................................................................................................................................................................................AA---------CAGCAGCAGCAG------CAGGC------------................................................................................................................19170.06100010
......................................................................................................................................................................................................ACAA---------CAGCAGCAGCAG------CAGG.............................................................................................................................20170.06100010
.CT--------C-----------AA-------------------CAGC------AGCAG----------------------CAGCAG...............................................................................................................................................................................................................................................................................20180.06101000
....................................................................................CAGCAGC----------------------AGCAGC---------------AACAG...........................................................................................................................................................................................................................18200.05100010
.........................................................................................................................................AGCAA------CAACAACAACAGCAGCAG---------C---------------AA---C.................................................................................................................................................................27200.05100010
...................................................................................GCAGCAGC----------------------AGCAGC---------------AACAGCA.........................................................................................................................................................................................................................21200.05100010
..............................................GC------AGCAG----------------------CAGCAGCAGC----------------------AGCAGC---------------................................................................................................................................................................................................................................23200.05101000
..............................................................................................................................................................AGCAGCAG---------C---------------AA---CAACAA---------CAGCAGC............................................................................................................................................24200.05100010
.......................................................................................................................................ACAGCAA------CAACAACAACAGCAG...................................................................................................................................................................................................22200.05100001
..............................................................................................................................................................AGCAGCAG---------C---------------AA---CAACAA---------CAGCAGCA...........................................................................................................................................25200.05100010
.......................................................................................................................................ACAGCAA------CAACAACAACAGCAGCA.................................................................................................................................................................................................24200.05100010
......................................................................................................................C---------------AACAGCAA------CAACAACAACAGCAGCAG---------.......................................................................................................................................................................................27200.05100010
................................................................................................................................................................CAGCAG---------C---------------AA---CAACAA---------CAGCAG.............................................................................................................................................21200.05101000
....................................................................................................................................................................................................CAACAA---------CAGCAGCAGCAG------CA...............................................................................................................................20200.05101000
...............................................................................................................................................................GCAGCAG---------C---------------AA---CAACAA---------CAGCAGCAG..........................................................................................................................................25200.05100010
.............................................AGC------AGCAG----------------------CAGCAGCAGC----------------------AGC..................................................................................................................................................................................................................................................21200.05101000
...........................................................................................................................................CAA------CAACAACAACAGCAGCAG---------C---------------AA---CAAC..............................................................................................................................................................28200.05100010
..........................................................................................................................................GCAA------CAACAACAACAGCAGCAG---------.......................................................................................................................................................................................22200.05100010
......................................................................................................................................AACAGCAA------CAACAACAACAGCAGCAG---------C---------------.......................................................................................................................................................................27200.05101000
.........................................................................................................................................................ACAACAGCAGCAG---------C---------------AA---CAACAA---------CA.................................................................................................................................................24200.05100010
.....................................................................................................................................................................................................AACAA---------CAGCAGCAGCAG------CA...............................................................................................................................19200.05101000
......................................................................................................................................AACAGCAA------CAACAACAACAGCAGC..................................................................................................................................................................................................24200.05101000
......................................................................................................................................................ACAACAACAGCAGCAG---------C---------------AA---CAA...............................................................................................................................................................22200.05100010
.....................................................................................................................................................................G---------C---------------AA---CAACAA---------CAGCAGCAGCA........................................................................................................................................21200.05100010
....................................................................................................................................................................AG---------C---------------AA---CAACAA---------CAGCAGCAGCAG------CA...............................................................................................................................25200.05100010
....................................................................................................................................................CAACAACAACAGCAGCAG---------C---------------AA---CAA...............................................................................................................................................................24200.05100010
dp5
CGG--------GC----AAGAAGGGCT---C----------------GG-----GG---CAAGGA-------------------CTCA-----------A---GG---ATCA--GC----GGGATGGCAATGG---------CAACAA---------------CAT------TAA---CATCATCAACAA------T---------------------A---ACAACAACAGCAACGGAGG------------------------------------CA------------------TGAGC---ACG---CTCAGC----------------CAAAAGAAGACCT-----CGATGATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CAA----------------GTGCGGCA---C--AGCT---CCAAAAGC------AGCAG----------------------CAACAGC--------------------A--G---C---AGCAGC---------AACAACAG------CAGCAACAGCAGCAGCAG---------C---------------AA---CAACAA---------CAGCAGCA---G------CAACA------G------CAGCAGCAA------------CAGCAGCAGCAACA------AC------AGCA------------GCAGC-----------------A---GCA-ACAG-CAGTCGATGGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................................................................................................................................................................................................................................................................................................A---GCA-ACAG-CAGTCGATGGC1912.002200000
.......................................................GCAG----------------------CAACAGC--------------------A--G---C---AGCAGC---------A...............................................................................................................................................................................................................................21200.102002000
.........................................................AG----------------------CAACAGC--------------------A--G---C---AGCAGC---------AACA............................................................................................................................................................................................................................22200.102002000
.....................................................................................................................................................AGCAACAGCAGCAGCAG---------C---------------AA---CA................................................................................................................................................................22200.102002000
........................................................................................................................................................................................................AA---------CAGCAGCA---G------CAACA------G------CAGC...........................................................................................................21200.051001000
.............................................................................................................................................................CAGCAGCAG---------C---------------AA---CAACAA---------CAGCAGCA---........................................................................................................................................26200.051001000
....................................................................................................................................................................................................................................................................................GCAACA------AC------AGCA------------GCAGC-----------------A---GCA-ACA.............24200.051001000
................................................................................................................................................................CAGCAG---------C---------------AA---CAACAA---------CAGCAGC............................................................................................................................................22200.051100000
..................................................................................................................................................................................................................................................................................CAGCAACA------AC------AGCA------------GCAGC-----------------A---GCA-................23200.051001000
...................................................................................................................................................................................................................................................................................AGCAACA------AC------AGCA------------GCAGC-----------------A---GC..................21200.051010000
......................................................AGCAG----------------------CAACAGC--------------------A--G---C---AGCAGC---------A...............................................................................................................................................................................................................................22200.051000010
.................................................................................................................................................................AGCAG---------C---------------AA---CAACAA---------CAGCAG.............................................................................................................................................20200.051010000
droAna3
GCC--------------------GG-------------------CAGC------AACAG----------------------CAGCAGCAGC----------------------AACAGC---------------AACAGCAG------CAGCAACAACAGCAGCAG---------C---------------AA---CAACAG---------CAACAGCAACAG------CAATG------------CCGACAGCAACAGCA---AC---A------GCA------------------GCAAC---ATG---AGCAGC-AAACA-----------------CAGCAA-----CAGCAACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................AGCAACAACAGCAGCAG---------C---------------.......................................................................................................................................................................18200.255050000
......................................................................................GCAGC----------------------AACAGC---------------AACAGCAG------CAGC..............................................................................................................................................................................................................23200.153120000
..C--------------------GG-------------------CAGC------AACAG----------------------CAGCAGCAG............................................................................................................................................................................................................................................................................2180.131100000
.........................................................AG----------------------CAGCAGCAGC----------------------AACAGC---------------AACA............................................................................................................................................................................................................................22200.102020000
.....................................................................................AGCAGC----------------------AACAGC---------------AACAGCA.........................................................................................................................................................................................................................19200.102101000
........................................................................................AGC----------------------AACAGC---------------AACAGCAG------CAGC..............................................................................................................................................................................................................21200.102010001
...............................................C------AACAG----------------------CAGCAGCAGC----------------------AACAGC---------------................................................................................................................................................................................................................................22200.102020000
..............................................GC------AACAG----------------------CAGCAGCAGC----------------------AACAGC---------------A...............................................................................................................................................................................................................................24200.102020000
.............................................AGC------AACAG----------------------CAGCAGCAGC----------------------AAC..................................................................................................................................................................................................................................................21200.102020000
......................................................AACAG----------------------CAGCAGCAGC----------------------AACAGC---------------................................................................................................................................................................................................................................21200.102020000
..............................................GC------AACAG----------------------CAGCAGCAGC----------------------AACAGC---------------AAC.............................................................................................................................................................................................................................26200.102000002
.........................................................................................................................................................ACAACAGCAGCAG---------C---------------AA---CA................................................................................................................................................................18200.051010000
.................................................................................................................................................................AGCAG---------C---------------AA---CAACAG---------CAACAGCA...........................................................................................................................................22200.051010000
.............................................................................................................................................G------CAGCAACAACAGCAGCAG---------C---------------A......................................................................................................................................................................21200.051100000
............................................................................................................................................AG------CAGCAACAACAGCAGC..................................................................................................................................................................................................18200.051010000
.........................................................................................................................................AGCAG------CAGCAACAACAGCAGCAG---------C---------------A......................................................................................................................................................................25200.051000001
.........................................................AG----------------------CAGCAGCAGC----------------------AACAGC---------------AACAGC..........................................................................................................................................................................................................................24200.051010000
.........................................................................................................................................AGCAG------CAGCAACAACAGCAGC..................................................................................................................................................................................................21200.051010000
.................................................................................CAGCAGCAGC----------------------AACAGC---------------AACAGC..........................................................................................................................................................................................................................22200.051010000
......................................................................................GCAGC----------------------AACAGC---------------AACAGCAG------CAGCAAC...........................................................................................................................................................................................................26200.051010000
.......................................................ACAG----------------------CAGCAGCAGC----------------------AACAGC---------------AA..............................................................................................................................................................................................................................22200.051100000
...............................................................................................................................................................GCAGCAG---------C---------------AA---CAACAG---------CAAC...............................................................................................................................................20200.051100000
.........................................................AG----------------------CAGCAGCAGC----------------------AACAGC---------------AACAGCAG------C.................................................................................................................................................................................................................27200.051000001
......................................................AACAG----------------------CAGCAGCAGC----------------------AACAGC---------------A...............................................................................................................................................................................................................................22200.051010000
......................................................................................................................C---------------AACAGCAG------CAGCAACAACAGCAGCA.................................................................................................................................................................................................26200.051010000
........................................................................................................................................................AACAACAGCAGCAG---------C---------------AA---CA................................................................................................................................................................19200.051010000
.........................................................AG----------------------CAGCAGCAGC----------------------AACAGC---------------A...............................................................................................................................................................................................................................19200.051000001
.............................................AGC------AACAG----------------------CAGCAGCAGC----------------------AACAGC---------------................................................................................................................................................................................................................................24200.051010000
.............................................AGC------AACAG----------------------CAGCAGCAGC----------------------A....................................................................................................................................................................................................................................................19200.051010000
............................................................................................................................................................ACAGCAGCAG---------C---------------AA---CAACAG---------CA.................................................................................................................................................21200.051000001
.................................................................................................................................................................AGCAG---------C---------------AA---CAACAG---------CAACAGC............................................................................................................................................21200.051010000
....................................................................................................................................................................................................CAACAG---------CAACAGCAACAG------C................................................................................................................................19200.051010000
.................................................................................................................AACAGC---------------AACAGCAG------CAGCAA............................................................................................................................................................................................................20200.051010000
..........................................................................................................................................................CAACAGCAGCAG---------C---------------AA---CAACAG---------CA.................................................................................................................................................23200.051100000
.......................................................ACAG----------------------CAGCAGCAGC----------------------AACAGC---------------AACA............................................................................................................................................................................................................................24200.051010000
.........................................................................................................................................AGCAG------CAGCAACAACAGCAGCAG---------C---------------.......................................................................................................................................................................24200.051000001
.....................................................................................................................................................AGCAACAACAGCAGCAG---------C---------------AA---C.................................................................................................................................................................21200.051000001
.....................................................................................AGCAGC----------------------AACAGC---------------AACAGCAG------C.................................................................................................................................................................................................................21200.051010000
..............................................................................................................................................................AGCAGCAG---------C---------------AA---CAACAG---------CAACAGC............................................................................................................................................24200.051010000
.............................................AGC------AACAG----------------------CAGCAGCAGC----------------------AACAGC---------------A...............................................................................................................................................................................................................................25200.051001000
........................................................CAG----------------------CAGCAGCAGC----------------------AACAGC---------------AAC.............................................................................................................................................................................................................................22200.051010000
..................................................................................................................................................................GCAG---------C---------------AA---CAACAG---------CAACAGC............................................................................................................................................20200.051010000
......................................................................................................................................AACAGCAG------CAGCAACAACA.......................................................................................................................................................................................................19200.051100000
............................................CAGC------AACAG----------------------CAGCAGCAGC----------------------AAC..................................................................................................................................................................................................................................................22200.051010000
droBip1
AGC------------------ATGGCC---C----------------GA-----AA---CAA-------------------CAACTGG--------------------A--G---C---AGCGGC---------AGCAACGC------CAGCAACAGCCGCTGCAG---------C---------------AA---CATCAA---------CAGCAGCA---G------CAACA------T------CAAAACCAG------------CAACAGATGATGCA---------------CCAGC---GAG---CGCAAC----------------AACAAAATGGCCA-----AGAAGGASizeHit CountTotal NormTotal
No Reads
droKik1
CCA---------------AGCCCAG-----------------------------------------------------------CAGC--------------------A--GCACC---AGCAA------------CAGCAC------CAGCAACAGCAGCACCAG---------CAGCAGCAACAGCAG---------------------------CA---G------CAACA------A------CAGCAGCAA------------CAGCAACAGCAGCA---------------TCTTC---ATG---CCCAGC-----------------AGTTGCAGGC-------CCAGTTGSizeHit CountTotal NormTotal
No Reads
droFic1
CAA----------------CTCCAGCA---C----------------C------AG---CAT-------------------CAGCAGCAGC----------------------AGCAGC---------------AACAGCAG------CATCAACAACAGCAGCATCAGCAACTCC---------------AA---C------------------ATCAACAG------CAGCA------------TCAGCAGCAGCAGCA---TC---A------GCAGCATCAACAGCAGCAACATCA----------------------A-----------------CAACAT-----CAGCAACSizeHit CountTotal NormTotal
No Reads
droEle1
CTT--------CT----CAGCGCAACT---G----------------C----------------------------------AGCAGC--------------------A--GCAGC------AACAACAGCA---GC------------AGCAA---CATGCCGCC---------------CAACAGCAG------------------CAGC------A---ACAACAGCAGCAGCAGCAGCATCATCAAGCGCATCCG---CAGCAA---------GT------------------GCAGA---TCA---TT-----CAGCA-----------------GGGCGC-----CGGTGGTSizeHit CountTotal NormTotal
No Reads
droRho1
CGA--------GC----AATTG---TTTGGTTCAGGTAGC--------------AG-------------------------------A---GAACGTCGCCCAGCAGCA--ACATC---ATCAG------------C------------------------AGCAC---CAGCAGC---------------AACAGC---AC---------CAGCAGCAACATCA---GC----------------------TCATCA---GCAACAA---------CTGCATGAAAACC-------GC------AG-----GCATT-GAGGA-----------------CGACGT-----TGCCGCCSizeHit CountTotal NormTotal
No Reads
droBia1
CAG----------------GGCCAGCT---C----------------AT-----AG---CCA-------------------C-----------------------------C--AC----GCAACAACAACAG---------CAGCAA---------CAGCCCATC---------CAGCAGCAGCAGCAGCAACAAC---AA---------CAGCAGCAACAG------CAACC------A------CAGCCTCTCCA---GCAGCAA---------CA------------------ACATCGATTCGTTAGCAATGCCGGAG--------------------TCA-----CAATGCCSizeHit CountTotal NormTotal
No Reads
droTak1
TCTAGTCCCAAGAAGCAAGCGATGGCC---C--AG---------CAGC------AACAG----------------------CAGCAGCAAC----------------------AGCAG------------------CAGCAG------CAGCAACAGCAGCAGCAG---------CAGCAGCAACAGCAG------C---------------------A---G------CAACA------G------CA------------GCAGCAACAGCAGCAGCA---------------------------GCA------------------------------------------TCGTCAASizeHit CountTotal NormTotal
No Reads
droEug1
CAT--------CC----AGCGGCGACG---C----------------GT-----TG---CATGTG----------------CAGCACC--------------------A--GCAGCAG---CAA---CAGCA---AC------------AGCAA---CAGCAGGA---------------------------ACATC---AA---CAGCAGC------A---ACAGCAGCAGCAGCAACAG------CA------------GCAACAACAGCAGCA---------------------GC------AGGATACGAAAACGAGGA-----------------TGACAA-----CGACCACSizeHit CountTotal NormTotal
No Reads
dm3
CCA--------AG----CAGCGCGA--AGGTACAGCCAGC-----ACCACTAATTCCA---GCTCCAACTCTAGCAGC---AGTCA----------------------------GC---AGCAGCAA---------CAACAGCAGCAA---------------CAG------CAG---CAGCAGCAGCAA------C---------------------------A---GCAA-A------------------GTA------GCAGCAA---------CA------------------CCACC---G------CCAGC-----------------AGCA--ACACATCCGCCTCGTCCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................................................................CAA-A------------------GTA------GCAGCAA---------CA------------------CCACC---.....................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
..A--------AG----CAGCGCGA--AGGTACAGCC.................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000
.CA--------AG----CAGCGCGA--AGGTACAG...................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
....................................CAGC-----ACCACTAATTCCA---GC.......................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CCA--------AG----CAGCGCGA--AGGTA......................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.................CAGCGCGA--AGGTACAGCCAGC-----.........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..........................................................................CAGC---AGTCA----------------------------GC---AGCAGCAA---------CA............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
..................AGCGCGA--AGGTACAGCCAGC-----.........................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................A------GCAGCAA---------CA------------------CCACC---G------CCAGC-----------------........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................AA-A------------------GTA------GCAGCAA---------CA------------------CCA..........................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................GCAGCAA---------CA------------------CCACC---G------CCA...........................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................CAA---------------CAG------CAG---CAGCAGCAGC..........................................................................................................................................................................19200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006
....................................................................................CA----------------------------GC---AGCAGCAA---------CAACAGCAGC....................................................................................................................................................................................................................22200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000001000
...............................................................................................................................................AGCAA---------------CAG------CAG---CAGCAGCAGC..........................................................................................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000
...................................................................................................................................................A---------------CAG------CAG---CAGCAGCAGCAA------C---------------------------A---..................................................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................AGCAGCAGCAA------C---------------------------A---GCAA-A------------------G.........................................................................................................1960.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................CAACAGCAGCAA---------------CAG------CAG---CAGCAGCAG...........................................................................................................................................................................27130.1520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................AA---------CAACAGCAGCAA---------------CAG------CAG---CAGCA...............................................................................................................................................................................25200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................AGCAA---------CAACAGCAGCAA---------------CAG------..........................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
..................................................................................................................GC---AGCAGCAA---------CAACAGCAG.....................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
..............................................................................................................................................CAGCAA---------------CAG------CAG---CAGCAGCAG...........................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................CAACAGCAGCAA---------------CAG------CAG---CAGCAGCAGC..........................................................................................................................................................................28120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................A----------------------------GC---AGCAGCAA---------CAACAGCAGCAA---------------CAG------C.........................................................................................................................................................................................27130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................GC---AGCAGCAA---------CAACAGCAGCAA---------------CAG------C.........................................................................................................................................................................................26140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................CAGCAGCAGCAA------C---------------------------A---GCAA-A------------------..........................................................................................................19170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................C---AGCAGCAA---------CAACAGCAGCAA---------------...................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................A---------------CAG------CAG---CAGCAGCAGCAA------C---------------------------......................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................GCAGCAA---------CAACAGCAGCAA---------------...................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................CAGCAA---------CAACAGCAGCAA---------------CAG------..........................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
....................................................................................................................................................................AG------CAG---CAGCAGCAGCAA------C---------------------------A---GCA...............................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................GCAGCAA---------------CAG------CAG---CAGCAGCA............................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................CA----------------------------GC---AGCAGCAA---------CAACAGCAGCAA---------------...................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................AA---------CAACAGCAGCAA---------------CAG------CAG---C...................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.........................................................................................................................................AACAGCAGCAA---------------CAG------CAG---CAGC................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.........................................................................................................................................AACAGCAGCAA---------------CAG------CAG---CAGCA...............................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........................................................................................................................................CAACAGCAGCAA---------------CAG------CAG---CAG.................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................AG---CAGCAGCAGCAA------C---------------------------A---GC................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................A---------CAACAGCAGCAA---------------CAG------CAG---CAGC................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................CAGCAA---------------CAG------CAG---CAGCAGCAGC..........................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
droSim2
CTC--------CA----GAGTCCGCCA--------------------CATCAGCCGCAT---CT-CAATCCTCACGGT---CATCA----------------------------CC---AGCAA------------C---------------AACAGCAGCAGCAG---CAACAGC---------------AACAGC---AGCAGCAGCAAC------A---ACAACAGCAGCAGCAACAG------CA------------GCAAC------------------------------AT-------ACG---TTGCAC----------------CAGCAGAGAGGAC-----CCTTCATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................ACGGT---CATCA----------------------------CC---AGCAA------------C---------------AACAGA........................................................................................................................................................................................................2411.00100000010000000000
..............................................................................................................................................................................................................................ACAACAGCAGCAGCAACAG------CA------------GC...............................................................................................23180.06100010000000000000
...................................................................................................................................................................................................GC---AGCAGCAGCAAC------A---ACAACA..................................................................................................................................21200.05100000000000100000
......................................................................................................................................................................................................................................AGCAGCAACAG------CA------------GC...............................................................................................15200.05100000000001000000
................................................................................................................................................................................................................................AACAGCAGCAGCAACAG------CA------------.................................................................................................19200.05100000000000100000
..................................................................................................................................................................................................................AC------A---ACAACAGCAGCAGC..........................................................................................................................17200.05100000000001000000
........................................................................................................................................................AACAGCAGCAGCAG---CAACAGC---------------.......................................................................................................................................................................21200.05100000000000100000
...........................................................................................................................................................................ACAGC---------------AACAGC---AGCAGCA.......................................................................................................................................................18200.05100000000001000000
...................................................................................................................................................................................................................C------A---ACAACAGCAGCAGCAACAG------C..............................................................................................................22200.05100000000000100000
droSec2
CAT--------CC----AGCGACGACG---C----------------GT-----TG---CATGTG-------------------CAG----------------------------C---AGCAGCAG---------CAACAGCAGCAA---------------CAT------CAG---CAGCAGCAGCAA------C---------------------A---G------CAACA------G------CA------------GCAACAACAGCAGCAGC---------------------------AGGATACGAAAACGAGGATGACAACGACCACAGGCAAACGC-----GGAGGACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................................................................................................................................................................CAACA------G------CA------------GCAACAACAGCAG....................................................................................21200.0511000
.......................................................................................................................................................................................................................................................CA------------GCAACAACAGCAGCAGC---------------------------A....................................................20200.0510100
................................................................................................................................................................................................................................................G------CA------------GCAACAACAGCAGCAGC---------------------------AG...................................................22200.0511000
.......................................................................................................................................................................................................................................................................AACAACAGCAGCAGC---------------------------AGGT.................................................19200.0510010
...............................................................................................................................................AGCAA---------------CAT------CAG---CAGCAGC.............................................................................................................................................................................18200.0510010
..........................................................................................................................................................................................................................A---G------CAACA------G------CA------------GCAACAACAGCAGC...................................................................................24200.0511000
...................................................................................................................................................................................AGCAGCAGCAA------C---------------------A---G------CAACA------......................................................................................................................19200.0510010
droYak3
CAT--------CC----AGCGGCGACG---C----------------GT-----TG---CATGTG--------------------------------------------------C---AGCAA------------C---------------AACAGCAGCAGCAA---CAGCAGC---------------AGCAAC---AT---------CAGCAGCAACAG------CAACA------G------CA------------GCAACAACAGCAGCAGCA---------------------------GGATACGAAAACGAGGATGACAACGACCACAGGCAAAC-------GCGGAGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................................................................................................................................CAACAACAGCAGCAGCA---------------------------GGA.................................................2040.25100000010000
.....................................................................................................................................................................................................................................................................GCAACAACAGCAGCAGCA---------------------------GG..................................................2050.20100000100000
.......................................................................................................................................................................................................................................................................AACAACAGCAGCAGCA---------------------------GGA.................................................1960.17100000010000
...................................................................................................................................................................CAA---CAGCAGC---------------AGCAAC---AT---------CAGCAGCA...........................................................................................................................................2680.13100010000000
........................................................................................................................................................................................................AT---------CAGCAGCAACAG------CAACA------G------CA------------.................................................................................................22130.08101000000000
.....................................................................................................................................................................A---CAGCAGC---------------AGCAAC---AT---------CAGCA..............................................................................................................................................21150.07101000000000
................................................................G--------------------------------------------------C---AGCAA------------C---------------AACAGCAGCAGCAA---CAGCAGC---------------.......................................................................................................................................................................29180.06100100000000
................................................................G--------------------------------------------------C---AGCAA------------C---------------AACAGCAGCAGCAA---CAG..........................................................................................................................................................................................25200.05101000000000
......................................................................................................................................................................................................................................AACA------G------CA------------GCAACAACAGCAGCAGC................................................................................24200.05101000000000
................................................................G--------------------------------------------------C---AGCAA------------C---------------AACAGCAGCAGCAA---CAGC.........................................................................................................................................................................................26200.05101000000000
..........................................................................................................................AA------------C---------------AACAGCAGCAGCAA---CAGC.........................................................................................................................................................................................21200.05100000010000
droEre2
CAT--------CA----CAGTGCGGCC---G----------------CAGTGGCCGCTG----------------------CTGCGGC---AGCCGCCGT--------------------CCAT------------CAGCAT------CAGCAACAGCAGCAGGTG---------CAGCAGCAGCAGCAGCAGCACC---------------------A---T------------------------CAGCAGCAG------CAGCAA---------CAGCAGCA---CC------AGCAGC---AGGTT----------------------------GCT-GCCG-T---TGCGATGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................CACC---------------------A---T------------------------CAGCAGCAG------CAGCAA---------C................................................................................2230.3310100000
................................................................................................................................................................................................GCACC---------------------A---T------------------------CAGCAGCAG------CAGC............................................................................................2090.1110000010
............................................................................................................................................................................................................................................................GCAG------CAGCAA---------CAGCAGCA---C.....................................................................19190.0511000000

Generated: 05/17/2015 at 11:26 PM