ID:

dmo_948

 Coordinate:

scaffold_6496:3392146-3392296 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dmoj_GLEANR_4851:6]; CDS [Dmoj\GI19958-cds]; intron [Dmoj\GI19958-in]

Repeatable elements

NameClassFamilyStrand
(CAA)nSimple_repeatSimple_repeat+
(TA)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CCAAATTGCCGCCCCGAGATAATGTCTATGCGCACGATCTAATTCCAAAGGTGAGAGACAACAATTAGCAGCAACAACAACACCAGCAACAACAACAAAAACAACAGCCGAAAACTGTTGCTCAAGTGTTTTGTAGGCAAGGTGTTGGAACAATTGTTGCAAGCGCGTAAGAAACAATAAGTTAATATATAGGCATAAATATATATATGTATATATGTTTATATAGCTATATAATGTGTGAGCAAGGCGTG
**************************************************.................(((((((...(((((((.((.((((.((((....((((((.......))))))......))))))))..))..)))))))......)))))))..((..(((...(((.....)))....)))..)).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Anti-sense strand reads

GGTTTAACGGCGGGGCTCTATTACAGATACGCGTGCTAGATTAAGGTTTCCACTCTCTGTTGTTAATCGTCGTTGTTGTTGTGGTCGTTGTTGTTGTTTTTGTTGTCGGCTTTTGACAACGAGTTCACAAAACATCCGTTCCACAACCTTGTTAACAACGTTCGCGCATTCTTTGTTATTCAATTATATATCCGTATTTATATATATACATATATACAAATATATCGATATATTACACACTCGTTCCGCAC
**************************************************.................(((((((...(((((((.((.((((.((((....((((((.......))))))......))))))))..))..)))))))......)))))))..((..(((...(((.....)))....)))..)).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V056
head
......ACGGCGGGGCCCTAGCAC................................................................................................................................................................................................................................... 18 3 20 0.05 1 1 0
.....................................AGCTTAAGCTTTCCACTAT................................................................................................................................................................................................... 19 3 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6496:3392096-3392346 + dmo_948 CCAA-AT---------------------TG-----------CCGCCCCGAGATAATG----TCTA----------------------------------------------------TGC-------------------------GCACGATCTAA---------------TTCCAAAGGTGAGA---------GACA---------------ACAATT---A-----------GCAG-C---------A----------ACAA------------C-------------------------------------------------------------------------------------------------------------A---------ACACCAGCAACAAC------AACAAA------A-AC--------AACAGCCGAAAACTGTTGCTCAAGTGT-----TTTGT-------------------------------------------------AGGCAAGGTGTTGG--AACAATTGTTGCAAGCGCGTAAGA---------A------------------------------------------------------------------------------------------------------------------------------ACAAT---------------------------------------------------AAGTTAAT------------AT----------------ATAGGCAT-----------------------AAATATATA----TATGTATA------------------------------TA----TGTTTATATAGCTATA---TAA--TG----------TGTGAGCAAG----------------------------------------------G---CGTG
droVir3 scaffold_12932:351561-351832 - CAACATTTG--TG--A---------------CAG-------CCGCGTGCCAAAA---------------ATTGCCGA----------------------------------------TTT-------------------------TAACAAGCGAA---------------TTGCAACAGCGACA-------------------GCAGCGACAACTATTGCTA-----------ACT-AAAGCAACAACA----------ACGACAACA----------------------------------------------------------------------------------------------------------------------------------ACAGCAAC---------AACA---ATA----------------------------------------------------------------------------ACAGCAGCAGC--------------------------------------AAC---------AACAACGAA---CATTGCAACCA--------------GGCGCCACAAACTAACCAAGTGGGTACCG----------------------------------------------------------TTA------------ACAAC---------------------------------------------------ACACTAACACACACATGCCCATATACTTATACATGT-------------------------------------TTAGATATACATATA----TATA------------------CATA--TT----TATG---------------CAT------------TATGTATGC-------------------------------------------------------AA
droGri2 scaffold_15245:9040119-9040329 + CCAA-AT---------------------TG-----------CCACCCAGGGATAATG----TGTA----------------------------------------------------TGC-------------------------GCACGATCTGA---------------TTCCAAAGGTAAGAC--AATTAG------------------------------TCACTAAAATGCAG-C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGTTGCTCAAGTTT-----TTTGT-------------------------------------------------AG-CCAAGTGTTAA--AACCATTGTTGTAAGC-----------------AGTT----------GAGTGTGTGCGCGTGCTTA------------------------------------------A----TAAACAA----------------------------------A--ATTTT---------------------GA--GCAGCACTAA----T--------------------------------------------A-----------------------------------------------TA----CATA----------CAAATATA---------------------------------------T--------------AATACGAGCAAGA-------------------------------------------------AGTG
droWil2 scf2_1100000004558:2614897-2615130 - CCAA-AT---------------------TG-----------CCGCCCAGGGATAATG----TCTATAA-------------------------------------------------TGC-------------------------CCACGATATGA---------------TTCCAAAGGTGAGTG--ATTTAA------------------------------AAACTCAATTGCAG-C---------A----------A-------------------------------------------------------------------CACATTTTGTCT-----TTGTCTCT-------------ATTT----------------------------------------------------------------------------CGAATTGTGTTGCTTAAGTC------------------------------------------------------------ACACAAAGTGTTGGGGA---------------------------------------------------------------------------------------------------------------------------------------------------------ACAAATTT----------------------G--GGAGCGTTAA----A--------------------------------------------A-----------------------------------------------AA------------------CAC--AAAATAAAACA-----------------------------------------------------AAAAGAAGTGTGGCAACTG--CTGCTTAGGTTAGTAAGTTAGTTAGTTAGT----AAGT
dp5 4_group1:1847865-1848081 - AGT---T---------------------TGACAGCCAAAGGCGGCAACGGAGCGG-------------------------------------------------------------------------------------------CACA---AAA---------------AGCCAAAGGCAAAGC--G-------------------------------------------------GC---------T----------AAAGCAGCAGCGACAGC--------------------------------------AAATGCAAC--------------------------------------------------------------------------------------------------CAACACA-GCCAC---A------------------------------------------------------------------------GCCA---------------------CAGC--CACAAAAGCAACAA---------AAGCAAATACAACAGAAAT---------------------------------------------------------------------------------CAAATGAACTCAAATT--------------------------AAATGTAAATGTAATTTTTATGCTAA---T---------------------------------------------------------------------------------------------------TATTTTTATT----TAAACG----------------C------------------------------AAGTT------------TGTTTGCGAG----------------------------------------------G---TGTA
droPer2 scaffold_31:669002-669166 - CCAA-GC---------------------TG-----------CCGCCCAGGGACAATG----TCTA----------------------------------------------------TGC-------------------------ACACGATTTGA---------------TTCCAAAGGTAAGAG--AGAGAG--------------------------------AGGGAGATCCCCCC---------A----------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATGGCCCATGCA---TCGTTTGC-------------------------------------------------TC-TGAAGTGTTGG--G--------------------------------------------------------------------------------------------------------------------------------------------------------TACAAATTT----------------------G--GCAGCGTTAA----A--------------------------------------------A-----------------------------------------------CA------------------CAAATAAAGCAAACCG-----------------------------------------------------GAGAGA-------------------------------------------------AGTG
droAna3 scaffold_13266:8689878-8690111 + CCAA-AT---------------------TG-----------CCACCCAGGGATAATG----TCTA----------------------------------------------------CTC-------------------------GCACGATCTGA---------------TTCCCAAGGTAGGTTAA--------------A----------C---T-----CT------GTTACAG-A---------GCCTAGAAGACCTAA-----------------------------------------------------------------TGTTCCACTTG-----ATTTTGGC-------------GTAT------------------------------CGGTAACCAA------AATA-G------AAA---------CGCAAGTGTGGCAGATTGCCCAAGTGGCTTCATTTGC-------------------------------------------------AGGCAAAGTGTCGG--A---------------------------------------------------------------------------------------------------------------------------------------------------------ACAAATTT----------------------G--GCAGCGTTAA----A--------------------------------------------A-----------------------------------------------CA------------------TGAGTAAGACAAGCCATG---------------------------AA---------------T------ATAGTA-------------------------------------------------AGTG
droBip1 scf7180000396759:138289-138525 - CCAA-AC---------------------TG-----------CCACCCCGGGATAATG----TTTA----------------------------------------------------CTC-------------------------GCACGATCTGA---------------TTCCCAAGGTGAGTTAG--------------A----------C---T-----GT------GTA----CC---------C-TTAGAATACCTAA-----------------------------------------------------------------TATTCCTCGTG-----ATTT------------------------------------------------------------G------GAAAAA------AAA---------AGCAAGTGTTGCTGGTTGCCCAAGTGCCTTCATTTGC-------------------------------------------------GGGCAAAGTGTCGG--A---------------------------------------------------------------------------------------------------------------------------------------------------------ACAAATTT----------------------G--GCAGCGTTAA----A--------------------------------------------A-----------------------------------------------CA------------------TGAGTAAGACAAGCCATG---------------------------AA---------------T------ATAGTTAGTGTGGCAACCTGTCCGCTTG-----------------------G---CTTG
droKik1 scf7180000302414:749588-749793 - TGAG-AG---------------------GG-----------CTGCGTACCAAAATT-------------------------AAGCGCAAGTCCGCCTGGATGCGGTGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGGCGACAACAGGTTCGAGGCAGCAGCAGGTGGAC--TTGATGCTAAAAGCGAAGAATTGTTCAAATCACAGAGCATTTAGACTACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGT---------------------------------------------------------------------------------TATAC---------------------------------CAAT--------------------------------------------------------AAT------------ATAT------A----------AATAT-----------------------ATATATATA----TATATATGTATATA------------------------TA----TATT-----------------------AT----AT------ATATGT-------------------------------------------------GTAT
droFic1 scf7180000453858:1336192-1336432 - CTGC-AT---------------------CG-----------GCCGCCTCGAGTGTTA----TGGA-CACGGAACT-AATTGAAAACCAAAGCCACATGACCGCAAACAAAATCACGA-------------------------------------------------------------GCT---------------------------------------------------------CC---------A----------GC---AG----------------------------------------------------------------------------------------------------------------------CAGTGGAGGCAGTGGCAGC------AGCAGCA----------------ATGCCAG------------CA--------AGCAA-----T--------------------------------------------------------------------------------------------------------TAGCAGCCCAAA----CAAA-----------CAACGAATTAAA--------------------------------------------------------------TGTCGTAAATAGTAACGACACCGGC---------------------------------------------------AACAATAA------------CT----------------TTATGTACAATCAACAGCAGCAACTCAATGC------------------------------------TT--------------------------------------------CCAG----CA------ACAGCA-------------------------------------------------ACAA
droEle1 scf7180000491000:134891-135127 + ACAA-TTTA--TGAAG---------------AGC-----------------TCAAACTTGGCCA-AGAAGGTGCTGGATTTAAGAAACTTGTGCCATAAA----------------------------------------------------------------CG-----------TAGC---------------------------------------------------------AC---------A----------AT---AA----------------------------------------------------------------------------------------------------------------------CAATAACAACAACAACAAC------AACAACCACA----------------GAGA------------CA--------GAC----------------------------------------------------------------------AACAA--AACCATGAACGA------------------------------------------------------AAACAAACCAAG-----------------------------------TATAG-----CTAGCGAACTTAT------------------------------------------------------------------------------------------------A--------------TATATATATATATAC----------------------------TATA------TATA----T------------------ATAGAAATATA----TACGCTAAATGTAGACA--TAGGCCG----------TGTAAACAGC----------------------------------------------G---CGAA
droRho1 scf7180000779985:62682-62911 + ACAA-GA---------------------AG-----------CAACGGCTGAGCGATG----CCAA----------------------------------------------------TGC-------------------------CAGCAACATGA---------------ATCACCTGCCACCTCAC--------------C----------C---G-----CA------GCA----AC---------A----------GCA----------------------------------------------------------------------------------------------------------------------------------------GCAGCAGC------AACATCAGGCACACCA-GCAAC---A------------------------------------------------------------------------CCAGCGATCCTCGCCAGCCCAAGTGCAAC--AGCAACAGCAGCAG---------CAGCAGATG-AACAGCAGTCGG-----------------------------------------------------------------------------------------------------------------------------------------------CAGAGTCAC----A------------------------------------------------------------------------------------ATGACATG----TGCCGACA------------------------------AG----TGGTC-----ACCACGC--CAATG------------GGCATGC----------------------------------------------AACTCAAGGTG
droBia1 scf7180000302126:1785984-1786201 + CAGC-AA---------------------TG-----------CGTCGCG--ATTGGAG----CCAA----------------------------------------------------TGC--G-CGGTATTTCCATAAT----------CATCGAA----TCGCCAGAAGTGGC--------------------CACAGCAACAG------------------------------CAG-C---------A----------ACAG------------CAATACAAGTA-----------------------GCAGCAACTGCCAAGA--GCAACAGCAACACTG-----------------------------------------------------------------------------------------------------------AAATGTCGCTCAAGTCC-----CAGGCTGGCATGTTGCTGGCATTTGGCGACACACCA------------------------------GC--AGCAGCAGCAGC---------AGA---------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAACA---------------------------AC---------------C------AAAGAT-------------------------------------------------AATT
droTak1 scf7180000415658:24153-24333 - CCAC-AATGCTTT--CCCACTGCGCAGCAG-----------CAACAGC--AACAATTATGGCCA-TGTTGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTA----------GCGCCTACG----------------------------------------------------------------------------------------------------------------------------------CCGGCAACAGC------AATA----------------------------------------------------------------------------------ACAACAGCAGC--------------------------------------AAT--G--------CGGCTGC---CATGGCCGCCG--------------TGTGCCAA------------------------------------------A----TGCAGAA----------------------------------TTTTTTTA----------------------G--TCAGCAGCAA---CC--------------------------------------------A-----------------------------------------------CA------------------GGAGTATAA--------------------------------------------TTAT----TA------TCAGCA-------------------------------------------------ACAG
droEug1 scf7180000409462:2907286-2907550 - TCAA-ATGA--TGGGA---------------CAG-------CCGGGACGATATAATG----ACTA----------------------------------------------------TGGAGGCGGCTTTCCCAATGACTTTGG-------------------------------CCTG---GGA---------CCCA---------------ATGGTC---C-----------GCA-GC---------A----------GCA---G----------------------------------------------------------------------------------------------------------------------CA---------ACAGCAGCAGCAGC------------CGCAGCA-GCAAC---A------------------------------------------------------------------------CCTG--------------------------------------------------------C---CGCCGCAGTTCCAT---------------------------CAGAAGGGTCCTGGCCCAGGTGCCGGCATGAATGTTCAGCAGA----------------------------------------ACTTC----------------------------------------------------------------------------------------------CTGGACATCAAGCAGGAGCTCTTCTATTC------------------------------------CT----CTCAAA----ATGATTT---CGATCTCAAGCG--T------CTG----CAGCAGCAGCAGG----------------------------------------------C---CATG
dm3 chr3R:1001394-1001662 - AGAA-CTTC--CAGCA---------------CAC----------TCTTCGCATGCAG----CAGA----------------------------------------------------TGA--T-GGCTCCCTCCATGCCTAACATCAGCAACATGTACCATCACCAGCAGCAAC--------------------AACAGCAACAG------------------------------CTG-C---------C----------CC---TG---------CAACAGCAGCAGCAGCAGCAACAGCAACCTC--------------------------------------------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------GATG-AGCAGCAGTCAGAG----CATG-----------CAGAATGTG--------------------------------------------------AACGA----------TTTCGCAGGTGGCTATCAGAATGGC---------------------------------------------------AGTTTGGA------------GT----------------ACAGGCGCAGTCAGCTCCATGA----------------------------TC------------------------------CA----T--CCACG-CTCTACG---AAA--TTCAG----------CAGCAACA-------------------------------------------------GTTG
droSim2 x:8613007-8613156 + AAAC-AA---------------------CA-----------AATGCAATA--C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAACAAACACAC--TC------------------------------------------------------------------------ACATACAC------CACA-A------A-AC--------AACACCCAAAAAC----ACTCACGATT-----TATAT-------------------------------------------------AGACGAT------------------------------ATA---------G---A---------------------------------------------------------------------------------------------------------------------------CAACCA-------------TTTAAGA-----------------------------------------TGATA-------------------------------------------------------------TATATATATA----TAAATA----------------T------------------------------ATATA--TGTGTACGGATACATGC------------------------------------------------------AAC
droSec2 scaffold_8:195272-195565 + AGCA-GC---------------------AG-----------CAGCAACA--ACAACACTTGCCA-CAACGCCAAC-AATCAAAGACATTGGAGACACACAGGGCAGCAAAGTCGACG--------------------------------------------------------GCA--------------------------------------------------------------GC---------A----------GC---AGC-----------------------------------------------AGCAGCGGC--AATTGTTGCTG-----------TTGTC-------------GTTTGAACTGCAGCAGCAGCA---------ACAGCAACAGCAAC------AGCA---ATAGCA-GCAAC---A------------------------------------------------------------------------TCAG--------------------------------------------------------C---AATTGCAGCCACTTGAGT----------GC----------------------------------------------CCAATAGGCCTAGTCAA------------------------------------------------------------------------------------------------ACATACTCATGCATATAT------A----------CGTAC-----------------------ACATTTATATGTATATGTA----CATA------------------------TG----TGTTCGAGTGGCCGCCT--CAGTG------------TGTGTGC----------------------------------------------AACA---C-AT
droYak3 2L:8785780-8786006 + AACA-AC---------------------CA-----------CAGCCTCTA--CAGCA------------------------ATAACACTTTAAATACA---GGCA------------------------------------------------------------------------------------------------------------ACAATAGCCA-----------GCT-GC---------A----------GC---AG----------------------------------------------------------------------------------------------------------------------CA---------GCAACAACAGCAGCAACATCCGCA----------------GATA------------CTGCCGGTCAAG------------------------------------------------------------------------------------------------------TACGAGTATTTAGAGAAT---------------------------------------------------------------------------------CTAACGAGCTCGGCTGC-------------------------AACTTCAGGTGCCATTGCAGCGACAA---CAACTTTCACGGGAGCTGCAAAAAG-------------------------------------------------------------------------TT----TTCATCCCTATT----------------------------------------------TG---CGG--CCCAC----CA------ACAGCG-------------------------------------------------GCAG
droEre2 scaffold_4690:8222485-8222766 + AGCA-GC---------------------AG-----------CGGCAGC--AACAACACTTGCCA-CAACGACAAC-AATCAAAGACATTGGAGACACAGAAGGCAGCAAAGTCGACG-------------------------------------------------------------------------------------------------------------------------GC---------A----------GCGGCAGCAGCAGCAGC--------------------------------------AGCTGCGGC--AATTGTTGCTGTTG-----CTGTTGTC-------------ATTTGAACTGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------GC--AGCAGCAGCAGC---------AGCAGCAGC---AATTGCAGCCACTTGAGT----------GC----------------------------------------------CCAATAGGCCTAGTCAA------------------------------------------------------------------------------------------------ACATACTCATGC--AT----------------ATACGTAC-----------------------ACATTTAT----------------------------------ACACGAGTATG----TGTTCGTGCTGCCACCT--CAGTGTG----------TGTGTGC----------------------------------------------AACA---C-AT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
CCAA-AT---------------------TG-----------CCGCCCCGAGATAATG----TCTA----------------------------------------------------TGC-------------------------GCACGATCTAA---------------TTCCAAAGGTGAGA---------GACA---------------ACAATT---A-----------GCAG-C---------A----------ACAA------------C-------------------------------------------------------------------------------------------------------------A---------ACACCAGCAACAAC------AACAAA------A-AC--------AACAGCCGAAAACTGTTGCTCAAGTGT-----TTTGT-------------------------------------------------AGGCAAGGTGTTGG--AACAATTGTTGCAAGCGCGTAAGA---------A------------------------------------------------------------------------------------------------------------------------------ACAAT---------------------------------------------------AAGTTAAT------------AT----------------ATAGGCAT-----------------------AAATATATA----TATGTATA------------------------------TA----TGTTTATATAGCTATA---TAA--TG----------TGTGAGCAAG----------------------------------------------G---CGTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droVir3
CAACATTTG--TG--A---------------CAG-------CCGCGTGCCAAAA---------------ATTGCCGA----------------------------------------TTT-------------------------TAACAAGCGAA---------------TTGCAACAGCGACA-------------------GCAGCGACAACTATTGCTA-----------ACT-AAAGCAACAACA----------ACGACAACA----------------------------------------------------------------------------------------------------------------------------------ACAGCAAC---------AACA---ATA----------------------------------------------------------------------------ACAGCAGCAGC--------------------------------------AAC---------AACAACGAA---CATTGCAACCA--------------GGCGCCACAAACTAACCAAGTGGGTACCG----------------------------------------------------------TTA------------ACAAC---------------------------------------------------ACACTAACACACACATGCCCATATACTTATACATGT-------------------------------------TTAGATATACATATA----TATA------------------CATA--TT----TATG---------------CAT------------TATGTATGC-------------------------------------------------------AASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................................................................................................................................CGACAACA----------------------------------------------------------------------------------------------------------------------------------ACAGCAAC---------AACA---ATA----------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2360.171001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................AACA---ATA----------------------------------------------------------------------------ACAGCAGCAGC--------------------------------------AAC---------A....................................................................................................................................................................................................................................................................................................................................................................................................................................2280.131001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................CGACAACA----------------------------------------------------------------------------------------------------------------------------------ACAGCAAC---------AACA---AT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2280.131001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................A---ATA----------------------------------------------------------------------------ACAGCAGCAGC--------------------------------------AAC---------AACA.................................................................................................................................................................................................................................................................................................................................................................................................................................22100.101000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................AC---------AACA---ATA----------------------------------------------------------------------------ACAGCAGCAGC--------------------------------------A................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.091000000000000000000000000000000000001000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................GCAAC---------AACA---ATA----------------------------------------------------------------------------ACAGCAGCAGC--------------------------------------AG...............................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000000001000000000000000000000000000
.........................................................................................................................................................................................................................................................A----------ACGACAACA----------------------------------------------------------------------------------------------------------------------------------ACAGCAAC---------AACA---.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000000000000000000000000000000000100
droGri2
CCAA-AT---------------------TG-----------CCACCCAGGGATAATG----TGTA----------------------------------------------------TGC-------------------------GCACGATCTGA---------------TTCCAAAGGTAAGAC--AATTAG------------------------------TCACTAAAATGCAG-C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGTTGCTCAAGTTT-----TTTGT-------------------------------------------------AG-CCAAGTGTTAA--AACCATTGTTGTAAGC-----------------AGTT----------GAGTGTGTGCGCGTGCTTA------------------------------------------A----TAAACAA----------------------------------A--ATTTT---------------------GA--GCAGCACTAA----T--------------------------------------------A-----------------------------------------------TA----CATA----------CAAATATA---------------------------------------T--------------AATACGAGCAAGA-------------------------------------------------AGTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
CCAA-AT---------------------TG-----------CCGCCCAGGGATAATG----TCTATAA-------------------------------------------------TGC-------------------------CCACGATATGA---------------TTCCAAAGGTGAGTG--ATTTAA------------------------------AAACTCAATTGCAG-C---------A----------A-------------------------------------------------------------------CACATTTTGTCT-----TTGTCTCT-------------ATTT----------------------------------------------------------------------------CGAATTGTGTTGCTTAAGTC------------------------------------------------------------ACACAAAGTGTTGGGGA---------------------------------------------------------------------------------------------------------------------------------------------------------ACAAATTT----------------------G--GGAGCGTTAA----A--------------------------------------------A-----------------------------------------------AA------------------CAC--AAAATAAAACA-----------------------------------------------------AAAAGAAGTGTGGCAACTG--CTGCTTAGGTTAGTAAGTTAGTTAGTTAGT----AAGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
AGT---T---------------------TGACAGCCAAAGGCGGCAACGGAGCGG-------------------------------------------------------------------------------------------CACA---AAA---------------AGCCAAAGGCAAAGC--G-------------------------------------------------GC---------T----------AAAGCAGCAGCGACAGC--------------------------------------AAATGCAAC--------------------------------------------------------------------------------------------------CAACACA-GCCAC---A------------------------------------------------------------------------GCCA---------------------CAGC--CACAAAAGCAACAA---------AAGCAAATACAACAGAAAT---------------------------------------------------------------------------------CAAATGAACTCAAATT--------------------------AAATGTAAATGTAATTTTTATGCTAA---T---------------------------------------------------------------------------------------------------TATTTTTATT----TAAACG----------------C------------------------------AAGTT------------TGTTTGCGAG----------------------------------------------G---TGTASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................................CAGC--------------------------------------AAATGCAAC--------------------------------------------------------------------------------------------------CAACACA-G.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGAAAT---------------------------------------------------------------------------------CAAATGAACTC....................................................................................................................................................................................................................................................................................................................2111.0011000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAT---------------------------------------------------------------------------------CAAATGAACTCAAATT--------------------------A....................................................................................................................................................................................................................................................................................2111.0010100000000
..............................................................................................................................................................................................................................................................................CGACAGC--------------------------------------AAATGCAAC--------------------------------------------------------------------------------------------------CAACACA-GCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT------------TGTTTGCGAG----------------------------------------------G---TGTA1811.0010001000000
......................................................................................................................................................................................AAGC--G-------------------------------------------------GC---------T----------AAAGCAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010000
droPer2
CCAA-GC---------------------TG-----------CCGCCCAGGGACAATG----TCTA----------------------------------------------------TGC-------------------------ACACGATTTGA---------------TTCCAAAGGTAAGAG--AGAGAG--------------------------------AGGGAGATCCCCCC---------A----------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATGGCCCATGCA---TCGTTTGC-------------------------------------------------TC-TGAAGTGTTGG--G--------------------------------------------------------------------------------------------------------------------------------------------------------TACAAATTT----------------------G--GCAGCGTTAA----A--------------------------------------------A-----------------------------------------------CA------------------CAAATAAAGCAAACCG-----------------------------------------------------GAGAGA-------------------------------------------------AGTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
CCAA-AT---------------------TG-----------CCACCCAGGGATAATG----TCTA----------------------------------------------------CTC-------------------------GCACGATCTGA---------------TTCCCAAGGTAGGTTAA--------------A----------C---T-----CT------GTTACAG-A---------GCCTAGAAGACCTAA-----------------------------------------------------------------TGTTCCACTTG-----ATTTTGGC-------------GTAT------------------------------CGGTAACCAA------AATA-G------AAA---------CGCAAGTGTGGCAGATTGCCCAAGTGGCTTCATTTGC-------------------------------------------------AGGCAAAGTGTCGG--A---------------------------------------------------------------------------------------------------------------------------------------------------------ACAAATTT----------------------G--GCAGCGTTAA----A--------------------------------------------A-----------------------------------------------CA------------------TGAGTAAGACAAGCCATG---------------------------AA---------------T------ATAGTA-------------------------------------------------AGTGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CCAA-AC---------------------TG-----------CCACCCCGGGATAATG----TTTA----------------------------------------------------CTC-------------------------GCACGATCTGA---------------TTCCCAAGGTGAGTTAG--------------A----------C---T-----GT------GTA----CC---------C-TTAGAATACCTAA-----------------------------------------------------------------TATTCCTCGTG-----ATTT------------------------------------------------------------G------GAAAAA------AAA---------AGCAAGTGTTGCTGGTTGCCCAAGTGCCTTCATTTGC-------------------------------------------------GGGCAAAGTGTCGG--A---------------------------------------------------------------------------------------------------------------------------------------------------------ACAAATTT----------------------G--GCAGCGTTAA----A--------------------------------------------A-----------------------------------------------CA------------------TGAGTAAGACAAGCCATG---------------------------AA---------------T------ATAGTTAGTGTGGCAACCTGTCCGCTTG-----------------------G---CTTGSizeHit CountTotal NormTotal
No Reads
droKik1
TGAG-AG---------------------GG-----------CTGCGTACCAAAATT-------------------------AAGCGCAAGTCCGCCTGGATGCGGTGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGGCGACAACAGGTTCGAGGCAGCAGCAGGTGGAC--TTGATGCTAAAAGCGAAGAATTGTTCAAATCACAGAGCATTTAGACTACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGT---------------------------------------------------------------------------------TATAC---------------------------------CAAT--------------------------------------------------------AAT------------ATAT------A----------AATAT-----------------------ATATATATA----TATATATGTATATA------------------------TA----TATT-----------------------AT----AT------ATATGT-------------------------------------------------GTATSizeHit CountTotal NormTotal
No Reads
droFic1
CTGC-AT---------------------CG-----------GCCGCCTCGAGTGTTA----TGGA-CACGGAACT-AATTGAAAACCAAAGCCACATGACCGCAAACAAAATCACGA-------------------------------------------------------------GCT---------------------------------------------------------CC---------A----------GC---AG----------------------------------------------------------------------------------------------------------------------CAGTGGAGGCAGTGGCAGC------AGCAGCA----------------ATGCCAG------------CA--------AGCAA-----T--------------------------------------------------------------------------------------------------------TAGCAGCCCAAA----CAAA-----------CAACGAATTAAA--------------------------------------------------------------TGTCGTAAATAGTAACGACACCGGC---------------------------------------------------AACAATAA------------CT----------------TTATGTACAATCAACAGCAGCAACTCAATGC------------------------------------TT--------------------------------------------CCAG----CA------ACAGCA-------------------------------------------------ACAASizeHit CountTotal NormTotal
No Reads
droEle1
ACAA-TTTA--TGAAG---------------AGC-----------------TCAAACTTGGCCA-AGAAGGTGCTGGATTTAAGAAACTTGTGCCATAAA----------------------------------------------------------------CG-----------TAGC---------------------------------------------------------AC---------A----------AT---AA----------------------------------------------------------------------------------------------------------------------CAATAACAACAACAACAAC------AACAACCACA----------------GAGA------------CA--------GAC----------------------------------------------------------------------AACAA--AACCATGAACGA------------------------------------------------------AAACAAACCAAG-----------------------------------TATAG-----CTAGCGAACTTAT------------------------------------------------------------------------------------------------A--------------TATATATATATATAC----------------------------TATA------TATA----T------------------ATAGAAATATA----TACGCTAAATGTAGACA--TAGGCCG----------TGTAAACAGC----------------------------------------------G---CGAASizeHit CountTotal NormTotal
No Reads
droRho1
ACAA-GA---------------------AG-----------CAACGGCTGAGCGATG----CCAA----------------------------------------------------TGC-------------------------CAGCAACATGA---------------ATCACCTGCCACCTCAC--------------C----------C---G-----CA------GCA----AC---------A----------GCA----------------------------------------------------------------------------------------------------------------------------------------GCAGCAGC------AACATCAGGCACACCA-GCAAC---A------------------------------------------------------------------------CCAGCGATCCTCGCCAGCCCAAGTGCAAC--AGCAACAGCAGCAG---------CAGCAGATG-AACAGCAGTCGG-----------------------------------------------------------------------------------------------------------------------------------------------CAGAGTCAC----A------------------------------------------------------------------------------------ATGACATG----TGCCGACA------------------------------AG----TGGTC-----ACCACGC--CAATG------------GGCATGC----------------------------------------------AACTCAAGGTGSizeHit CountTotal NormTotal
No Reads
droBia1
CAGC-AA---------------------TG-----------CGTCGCG--ATTGGAG----CCAA----------------------------------------------------TGC--G-CGGTATTTCCATAAT----------CATCGAA----TCGCCAGAAGTGGC--------------------CACAGCAACAG------------------------------CAG-C---------A----------ACAG------------CAATACAAGTA-----------------------GCAGCAACTGCCAAGA--GCAACAGCAACACTG-----------------------------------------------------------------------------------------------------------AAATGTCGCTCAAGTCC-----CAGGCTGGCATGTTGCTGGCATTTGGCGACACACCA------------------------------GC--AGCAGCAGCAGC---------AGA---------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAACA---------------------------AC---------------C------AAAGAT-------------------------------------------------AATTSizeHit CountTotal NormTotal
No Reads
droTak1
CCAC-AATGCTTT--CCCACTGCGCAGCAG-----------CAACAGC--AACAATTATGGCCA-TGTTGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTA----------GCGCCTACG----------------------------------------------------------------------------------------------------------------------------------CCGGCAACAGC------AATA----------------------------------------------------------------------------------ACAACAGCAGC--------------------------------------AAT--G--------CGGCTGC---CATGGCCGCCG--------------TGTGCCAA------------------------------------------A----TGCAGAA----------------------------------TTTTTTTA----------------------G--TCAGCAGCAA---CC--------------------------------------------A-----------------------------------------------CA------------------GGAGTATAA--------------------------------------------TTAT----TA------TCAGCA-------------------------------------------------ACAGSizeHit CountTotal NormTotal
No Reads
droEug1
TCAA-ATGA--TGGGA---------------CAG-------CCGGGACGATATAATG----ACTA----------------------------------------------------TGGAGGCGGCTTTCCCAATGACTTTGG-------------------------------CCTG---GGA---------CCCA---------------ATGGTC---C-----------GCA-GC---------A----------GCA---G----------------------------------------------------------------------------------------------------------------------CA---------ACAGCAGCAGCAGC------------CGCAGCA-GCAAC---A------------------------------------------------------------------------CCTG--------------------------------------------------------C---CGCCGCAGTTCCAT---------------------------CAGAAGGGTCCTGGCCCAGGTGCCGGCATGAATGTTCAGCAGA----------------------------------------ACTTC----------------------------------------------------------------------------------------------CTGGACATCAAGCAGGAGCTCTTCTATTC------------------------------------CT----CTCAAA----ATGATTT---CGATCTCAAGCG--T------CTG----CAGCAGCAGCAGG----------------------------------------------C---CATGSizeHit CountTotal NormTotal
No Reads
dm3
AGAA-CTTC--CAGCA---------------CAC----------TCTTCGCATGCAG----CAGA----------------------------------------------------TGA--T-GGCTCCCTCCATGCCTAACATCAGCAACATGTACCATCACCAGCAGCAAC--------------------AACAGCAACAG------------------------------CTG-C---------C----------CC---TG---------CAACAGCAGCAGCAGCAGCAACAGCAACCTC--------------------------------------------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------GATG-AGCAGCAGTCAGAG----CATG-----------CAGAATGTG--------------------------------------------------AACGA----------TTTCGCAGGTGGCTATCAGAATGGC---------------------------------------------------AGTTTGGA------------GT----------------ACAGGCGCAGTCAGCTCCATGA----------------------------TC------------------------------CA----T--CCACG-CTCTACG---AAA--TTCAG----------CAGCAACA-------------------------------------------------GTTGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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droSim2
AAAC-AA---------------------CA-----------AATGCAATA--C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAACAAACACAC--TC------------------------------------------------------------------------ACATACAC------CACA-A------A-AC--------AACACCCAAAAAC----ACTCACGATT-----TATAT-------------------------------------------------AGACGAT------------------------------ATA---------G---A---------------------------------------------------------------------------------------------------------------------------CAACCA-------------TTTAAGA-----------------------------------------TGATA-------------------------------------------------------------TATATATATA----TAAATA----------------T------------------------------ATATA--TGTGTACGGATACATGC------------------------------------------------------AACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-------------------------------------------------AGACGAT------------------------------ATA---------G---A---------------------------------------------------------------------------------------------------------------------------CAACC....................................................................................................................................................................................................................................................................................1913.00330000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAT------------------------------ATA---------G---A---------------------------------------------------------------------------------------------------------------------------CAACCA-------------TTTAAGA-----------------------------------------TGA...................................................................................................................................................................................................................2511.00100000000100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACGATT-----TATAT-------------------------------------------------AGACGAT------------------------------ATA---------G---A---------------------------------------------------------------------------------------------------------------------------.........................................................................................................................................................................................................................................................................................2511.00100000001000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------------------------------------AGACGAT------------------------------ATA---------G---A---------------------------------------------------------------------------------------------------------------------------CAACCA-------------TTTAAGA-----------------------------------------TGA...................................................................................................................................................................................................................2911.00100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------T------------------------------ATATA--TGTGTACGGATA..............................................................1911.00101000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC----ACTCACGATT-----TATAT-------------------------------------------------AGACGAT------------------------------A....................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC----ACTCACGATT-----TATAT-------------------------------------------------AGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-----TATAT-------------------------------------------------AGACGAT------------------------------ATA---------G---A---------------------------------------------------------------------------------------------------------------------------CAACCA-------------TT....................................................................................................................................................................................................................................................................2711.00100010000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAAC----ACTCACGATT-----TATAT-------------------------------------------------AGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATA----TAAATA----------------T------------------------------ATATA--TGTGTACGGA................................................................2611.00100000001000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----TATAT-------------------------------------------------AGACGAT------------------------------ATA---------G---A---------------------------------------------------------------------------------------------------------------------------CAACCA-------------T.....................................................................................................................................................................................................................................................................2511.00100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT-------------------------------------------------AGACGAT------------------------------ATA---------G---A---------------------------------------------------------------------------------------------------------------------------CAACCA-------------TTTAAGA-----------------------------------------......................................................................................................................................................................................................................2811.00100000001000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAT-------------------------------------------------AGACGAT------------------------------ATA---------G---A---------------------------------------------------------------------------------------------------------------------------CAACCA-------------TTTAAG................................................................................................................................................................................................................................................................2911.00100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAT-------------------------------------------------AGACGAT------------------------------ATA---------G---A---------------------------------------------------------------------------------------------------------------------------CAACCA-------------TTT...................................................................................................................................................................................................................................................................2511.00100010000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAAAAC----ACTCACGATT-----TATAT-------------------------------------------------AGACGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.00100000010000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAAAAC----ACTCACGATT-----TATAT-------------------------------------------------AGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT-------------------------------------------------AGACGAT------------------------------ATA---------G---A---------------------------------------------------------------------------------------------------------------------------CAACCA-------------TTT...................................................................................................................................................................................................................................................................2411.00100000000000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAAC----ACTCACGATT-----TATAT-------------------------------------------------AGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAGA-----------------------------------------TGATA-------------------------------------------------------------TATATATATA----TAAATA----------------................................................................................................................2811.00100000001000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAT------------------------------ATA---------G---A---------------------------------------------------------------------------------------------------------------------------CAACCA-------------TTTAAGA-----------------------------------------TGA...................................................................................................................................................................................................................2611.00100000010000000000
droSec2
AGCA-GC---------------------AG-----------CAGCAACA--ACAACACTTGCCA-CAACGCCAAC-AATCAAAGACATTGGAGACACACAGGGCAGCAAAGTCGACG--------------------------------------------------------GCA--------------------------------------------------------------GC---------A----------GC---AGC-----------------------------------------------AGCAGCGGC--AATTGTTGCTG-----------TTGTC-------------GTTTGAACTGCAGCAGCAGCA---------ACAGCAACAGCAAC------AGCA---ATAGCA-GCAAC---A------------------------------------------------------------------------TCAG--------------------------------------------------------C---AATTGCAGCCACTTGAGT----------GC----------------------------------------------CCAATAGGCCTAGTCAA------------------------------------------------------------------------------------------------ACATACTCATGCATATAT------A----------CGTAC-----------------------ACATTTATATGTATATGTA----CATA------------------------TG----TGTTCGAGTGGCCGCCT--CAGTG------------TGTGTGC----------------------------------------------AACA---C-ATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCA---------ACAGCAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510010
..CA-GC---------------------AG-----------CAGCAACA--ACAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510010
droYak3
AACA-AC---------------------CA-----------CAGCCTCTA--CAGCA------------------------ATAACACTTTAAATACA---GGCA------------------------------------------------------------------------------------------------------------ACAATAGCCA-----------GCT-GC---------A----------GC---AG----------------------------------------------------------------------------------------------------------------------CA---------GCAACAACAGCAGCAACATCCGCA----------------GATA------------CTGCCGGTCAAG------------------------------------------------------------------------------------------------------TACGAGTATTTAGAGAAT---------------------------------------------------------------------------------CTAACGAGCTCGGCTGC-------------------------AACTTCAGGTGCCATTGCAGCGACAA---CAACTTTCACGGGAGCTGCAAAAAG-------------------------------------------------------------------------TT----TTCATCCCTATT----------------------------------------------TG---CGG--CCCAC----CA------ACAGCG-------------------------------------------------GCAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAT---------------------------------------------------------------------------------CTAACGAGCTCGGCTGC-------------------------.....................................................................................................................................................................................................................................................................................2313.00300100020000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAACGAGCTCGGCTGC-------------------------AACTTCAG.............................................................................................................................................................................................................................................................................2511.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAT---------------------------------------------------------------------------------CTAACGAGCTCGGCTGC-------------------------.....................................................................................................................................................................................................................................................................................2411.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT---------------------------------------------------------------------------------CTAACGAGCTCGGCTGC-------------------------.....................................................................................................................................................................................................................................................................................2011.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGGGAGCTGCAAAAAG-------------------------------------------------------------------------T.....................................................................................................................................................1911.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGAGCTCGGCTGC-------------------------AACTT................................................................................................................................................................................................................................................................................2011.00101000000000
............................................................................................AATACA---GGCA------------------------------------------------------------------------------------------------------------ACAATAGCCA-----------GCT-..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAGCAACATCCGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAT---------------------------------------------------------------------------------CTAACGAGCTCGGCTGC-------------------------A....................................................................................................................................................................................................................................................................................2511.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT---------------------------------------------------------------------------------CTAACGAGCTCGGCTGC-------------------------A....................................................................................................................................................................................................................................................................................2011.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC-------------------------AACTTCAGGTGCCATTGC...................................................................................................................................................................................................................................................................2011.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAGCAGCAACATCCGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAT---------------------------------------------------------------------------------CTAACGAGCTCGGCTGC-------------------------AACC.................................................................................................................................................................................................................................................................................2711.00100100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGACAA---CAACTTTCACGGGAGCTG......................................................................................................................................................................................................................................2611.00100000010000
................................................TA--CAGCA------------------------ATAACACTTTAAATACA---GGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAG-------------------------------------------------------------------------TT----TTCATCCCTATT----------------------------------------------TG---CG...............................................................................2311.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCGACAA---CAACTTTCACGGGAGCT.......................................................................................................................................................................................................................................2811.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTAGAGAAT---------------------------------------------------------------------------------CTAACGAGCTCGGCT................................................................................................................................................................................................................................................................................................................2811.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGACAA---CAACTTTCACGGGAGCTGC.....................................................................................................................................................................................................................................2711.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAT---------------------------------------------------------------------------------CTAACGAGCTCGGCTGC-------------------------.....................................................................................................................................................................................................................................................................................2111.00100100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGAGAAT---------------------------------------------------------------------------------CTAACGAGCTCGGCTGC-------------------------.....................................................................................................................................................................................................................................................................................2611.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAA---CAACTTTCACGGGAGCTG......................................................................................................................................................................................................................................2311.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT---------------------------------------------------------------------------------CTAACGAGCTCGGCTGC-------------------------AAC..................................................................................................................................................................................................................................................................................2311.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGACAA---CAACTTTCACGGGAG.........................................................................................................................................................................................................................................2511.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGACAA---CAACTTTCACGGGAGCTGCA....................................................................................................................................................................................................................................2811.00100000010000
...A-AC---------------------CA-----------CAGCCTCTA--CAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000
.........................................................................................................................................................................................................................................................A----------GC---AG----------------------------------------------------------------------------------------------------------------------CA---------GCAACAACAGCAGCAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100100000000
..............................................................................................................................................................................................................................................GC---------A----------GC---AG----------------------------------------------------------------------------------------------------------------------CA---------GCAACAACAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100100000000
droEre2
AGCA-GC---------------------AG-----------CGGCAGC--AACAACACTTGCCA-CAACGACAAC-AATCAAAGACATTGGAGACACAGAAGGCAGCAAAGTCGACG-------------------------------------------------------------------------------------------------------------------------GC---------A----------GCGGCAGCAGCAGCAGC--------------------------------------AGCTGCGGC--AATTGTTGCTGTTG-----CTGTTGTC-------------ATTTGAACTGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------GC--AGCAGCAGCAGC---------AGCAGCAGC---AATTGCAGCCACTTGAGT----------GC----------------------------------------------CCAATAGGCCTAGTCAA------------------------------------------------------------------------------------------------ACATACTCATGC--AT----------------ATACGTAC-----------------------ACATTTAT----------------------------------ACACGAGTATG----TGTTCGTGCTGCCACCT--CAGTGTG----------TGTGTGC----------------------------------------------AACA---C-ATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................GC---------A----------GCGGCAGCAGCAGCAGC--------------------------------------A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000010

Generated: 05/17/2015 at 11:24 PM