ID:

dmo_941

 Coordinate:

scaffold_6496:2807922-2808053 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.5 -19.4 -19.3

Flybase annnotation

CDS [Dmoj\GI19941-cds]; CDS [Dmoj\GI19941-cds]; exon [dmoj_GLEANR_4836:1]; exon [dmoj_GLEANR_4836:2]; intron [Dmoj\GI19941-in]

Repeatable elements

NameClassFamilyStrand
(CAG)nSimple_repeatSimple_repeat+
mature
  1. scaffold_6473:9567468-9567487 -
  2. scaffold_6496:932671-932690 +
  3. dmo_941  scaffold_6496:2808026-2808045 +
  4. scaffold_6496:6684483-6684502 +
  5. scaffold_6496:18519107-18519126 -
  6. scaffold_6496:19027166-19027185 +
  7. scaffold_6498:1027392-1027411 +
  8. scaffold_6500:7566624-7566643 -
  9. scaffold_6500:24451638-24451657 -
  10. scaffold_6540:15721429-15721448 +
  11. scaffold_6540:24059379-24059398 +
  12. scaffold_6540:25297299-25297318 +
  13. scaffold_6540:26103935-26103954 +
star

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------##################################################
ATGATGATCGTGTTGGTCGTGATGATGTTGCTGCTGGCCATGACCGTGACGTCAATACACATATACTAGCACATGCACGCAATACGCACGCCGGCAACAACAACGACATCATTGACGCTAATGATGAGGTGTCAACGGCACGTGAACAACAACAGCAACAACATCAGCAGCAGCAGCAACAGCAGCAACACCAGCAGCAGCAGCAACAGCAGCAGCCTCATTTATCTAGTTC
**************************************************..................((...(((......((((...((((......((.((..((((((((....))))))))..))))...)))).))))..........((..........)).)))...)).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M060
embryo
 M046
female body
 V110
male body		 V041
embryo
 V049
head
................TCGTGATTATCTTGCTGC...................................................................................................................................................................................................... 18 2 10 3.30 33 33 0 0 0 0
...............CTCGTGATTATCTTGCTGC...................................................................................................................................................................................................... 19 3 20 2.25 45 45 0 0 0 0
.............TGCTCGTGATTATCTTGCTGC...................................................................................................................................................................................................... 21 3 6 1.00 6 6 0 0 0 0
..............AGTCGTGATTATCTTGCTGC...................................................................................................................................................................................................... 20 3 13 0.38 5 5 0 0 0 0
..............................................................................................................ATTGCCGCTAGTGATGGGGT...................................................................................................... 20 3 3 0.33 1 0 1 0 0 0
...........................CTGCTGCTGACCATGACCGT......................................................................................................................................................................................... 20 2 3 0.33 1 0 0 1 0 0
........................................................................................................................ATGCTGAGGTGACCACGGC............................................................................................. 19 3 7 0.14 1 0 1 0 0 0
...................................................................................................................................................................TCAGCAGCAGCAGCAACAGC................................................. 20 0 20 0.10 2 0 2 0 0 0
....................................................................................................................................................................................................GCAGCAGCAACAGCAGCAGC................ 20 0 20 0.10 2 0 2 0 0 0
..........................................................................................................................................................GCAACAACATCAGCAGCAGC.......................................................... 20 0 13 0.08 1 0 0 0 1 0
..................................................................................................................................................................ATCAGCAGCAGCAGCAACAGCAGCA............................................. 25 0 14 0.07 1 1 0 0 0 0
..............................................................................................................................................................CAACATCAGCAGCAGCAGCA...................................................... 20 0 20 0.05 1 0 0 1 0 0
........................................................................................................................................................................................GCAACACCAGCAGCAGCAGCA........................... 21 0 20 0.05 1 0 1 0 0 0
............................................................................................................................................................AACAACATCAGCAGCAGCAGC....................................................... 21 0 20 0.05 1 0 1 0 0 0
.........................................................................................................................................................................................CAACACCAGCAGCAGCAGC............................ 19 0 20 0.05 1 0 0 0 0 1

Anti-sense strand reads

TACTACTAGCACAACCAGCACTACTACAACGACGACCGGTACTGGCACTGCAGTTATGTGTATATGATCGTGTACGTGCGTTATGCGTGCGGCCGTTGTTGTTGCTGTAGTAACTGCGATTACTACTCCACAGTTGCCGTGCACTTGTTGTTGTCGTTGTTGTAGTCGTCGTCGTCGTTGTCGTCGTTGTGGTCGTCGTCGTCGTTGTCGTCGTCGGAGTAAATAGATCAAG
**************************************************..................((...(((......((((...((((......((.((..((((((((....))))))))..))))...)))).))))..........((..........)).)))...)).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
.......CGCACAACAAGCACTACTAT............................................................................................................................................................................................................. 20 3 14 0.07 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6496:2807872-2808103 + dmo_941 ATGATGATCG---TGTTGGTCGTGATGA-TGTTG------------------------------------------CTGC---TGGC-----------------------------------------CAT--------------------------------------------G------------------------------------------ACCGTGACGTCAATA---------------------------------------------------CACAT------------------ATA--CT-AGCAC-------------------------------------------------------------------------------------------------------ATGCACGCAATACGCACGCCGGCAAC---AACAACGAC---ATCATTGAC------------------------------------------GCTA----------------------------------------------ATGAT---------GAG-------------------------GTGTCAACGGCACGTGAACAACAACAGCAACA------------ACATC------------AGCA------GCAGCAGCAA------------CAGCAGCA---------------ACACCAGCAGCAGCAGCA----ACA------GCAGCAGCCT---CATTTATCTAGTTC--
droVir3 scaffold_10324:935052-935277 + dvi_826 ATGATGATGA---TGTTGCTGATGATGA-TGTTG------------------------------------------CTGA---TGAT----GA---------------------------------------------------------------------------------TGATGATGATGATGAGGGGAATGCGTATGTGAGTGCTGGCCATGACCATGACGTCAATA---------------------------------------------------CACAA------------------AT----------------------------------------------------------------ACAAACAC------------------------------------------ATTTACGCAATACGCAAGCCGGCAAC---AAGCACGAC---AACATTGAC------------------------------------------GCTA----------------------------------------------ATGAC---------GAG-------------------------GTGTCAACGGCACGTGAACGACAACA------------------------------------------------------------------------------------------------------ACAACA-------------ACAGCAGCCA---CATTTATCTAGTTC--
droGri2 scaffold_15245:8616679-8616955 + ATGATGATGA---CGATGATGGGAATGC-GTATG------------------------------------------TGAA---TGCT----GT---------------------------------------------------------------------------------CC---------------------------------------ATGACCATGACGTCAATGTGGCCGCAGTGAG---------------------------------------------------------------------------------------------ACAATCCCAAAT----------------------ACAACCACACTCACACTCAGATTCACACTCGCACTCGCACTCACATTCATATTCACGCACTACGCACGCCGGCAAC---GACAACGAC---AACATTGAC------------------------------------------GCTA----------------------------------------------ATGAC---------GAG-------------------------GTGTCATCGGCACGTGAACAACAACAACGA---------------CA------------------------------ACTG------------CAGCAACAGCAACAGCAACGACAACACCAGCAGC---AA----------------------------CATTTATCTAGTTC--
droWil2 scf2_1100000004513:2315910-2316107 - TGATCG-TCT---TGCTATTCCCGATGA-TGCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCATGACGTCAATACGGCCCCATTGAGACATCGTTGTACACGCATTGCTGGTACTGCTGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAC------------------------------------------GCTA----------------------------------------------ATGAC---------AAG-------------------------GTGTCAACGGCACGTGAACAGCAACAGCAA---------------------------------------------------------------CAGCAACAGCCGCAGCCACAGCCGCATCAACAGC---AACT---T-----------GGGAACGAC--TACTTAGCTAGTTC--
dp5 XR_group8:5137775-5137977 - ACGATGACCA---GCCAGGTAAT----------------------------------------GTC---------------G-------------CCGCAGAGTCCGCTGGGCAGCTCCTCCGCTGGCA------------------------ATCAGACTAGCA--------------------------------------------------------------------------------------------------------------------------------------------ACAAT--AACA---ACA-----------------------------------------------------------------------------------------------------------------------------------------ACAGC---------------------ACCACCAA---CAACAATAAT---AATAATAACA----------------------------------------------ACAACAACAACACGGAGGA--------GCAGGTGAAACA-----------------CCACCA------------------------------------------------------ACAACAG------------CAGCAGCAGCAACA---------GCAGCAG------CAGCA----ACA------GCA------------ACAACAGGCCTC--
droPer2 scaffold_13:85239-85467 + ATGAAT--CA---GTC-----CAGCTCA-TCCTA----------GCTGCCAACTAAACGCAATTCCAATTCATAATTCGCCGCCGCC------GC---------------------------------C---------------------------GCAGCAGCC--------------------------------------------------------------------------------------------------------------------------------------------ACAGTCGCACAACAAC-----------------------------------------------------------------------------------------------------------------------------AAC---AAC---AGCAGCAA------C---------AGCAACAGTTG---------CAAC------------AGCTGCAACT----------------------------------------------------------------GCA------------AC--------------AGCA---ACAGCAGCA---GAATCAAC------------------AACA---------ACAACAG------------CAACAACAACAACAACAACAACAACAGCAGCAGC---AACA---TTCAGTAGCAGC-----------------ACTAGCAC--
droAna3 scaffold_13340:10792875-10793083 + ATGAGGATGC---CGCTGACGATGACGA-TGACG------------------------------------------T-------------------------------TGCGCGGCGGC---------CGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATAGAATTAGAAAAGCGGGAGCCAAATACATCAAC-----------------------------------------------------------------AA---------------------------------------------------------------------CA----------------------------------------------ACAGCAGCCACGA-AAACG--------GAAAAATCAACAGAGGC--------------AGCA---ACAGCAACA------------GAA------------ACAGCAGCAGCA------GCAC------------CACCAAGA---------------GGAAAAGCAGCAACAGCAGTGG----AAGACGCGTCA----T--CGCCAGTGTTGTCC--
droBip1 scf7180000396413:542018-542214 + AGGGTGTTCG---TGTGGAGGAG-G-------TG------------------------------------------CA---GCTTCA------GA-------------TAGCCAAC------------GAAC--------------------A---GCAGCAGCA--------------------------------------------------------------------------------------------------------------------------------------------ACACG--CCCAGCAGTT-----------------------------------------------------------------------------------------------------------------------------GCAG---C---------------------------------AACAGAAGC------------------TCCA----------------------------------------------ACAGCAGCAACGT-GAGGA--------GCGAATGCAGCTTTTGC--------------AGCA---ACAGCAACT------------GCAGC------------AGCA------GCAGCTGCAA------------CACCAACA---------------ACAGCACCTGCAGCAGCAACT-G---GAGCAG--------------------CAGCTC--
droKik1 scf7180000302570:382356-382558 + TGGACGAGGA---TGTCGGCGAGGATGA-TGATG------------------------------------------ATGA---TGAT----GA---------------------------------------------------------------------------------GGATG---------------------------------------ACAACAACCTA----------------GAAACCGTC--ACAACAGTGCCTCAAACCAATGAA----------------------------------------------------------------------------------------------CAAC------------------------------------------------------------------------------------------TTAAC------------------------------------------GCTA----------------------------------------------AGGTC---------ATC-------------------------GT--------AACCACAACAACAACAACAG---------------CA------------TCTAGT------TCA------------TCATCAACAGCAGCA---------------GCAGCTGGAGGAGCAGCT----GGA------GCAACCAGCG---CATTAGCCAAGTTC--
droFic1 scf7180000454104:1161823-1162028 + GCGTTGATGC---CGTTGCAGCTGC--------------------------------------------------------------------------------TGCTGCGCAGC------------CAGCGAC-----------------G---ACAGCAGCA--------------------------------------------------------------------------------------------------------------------------------------------ACAGC--AGCA---ACA-----------------------------------------------------------------------------------------------------------------------------------------GCAGC---------------------AACACGAG---CAGCAGCAGC---AACAACAGCAACAGAAACA-------------------------------------------------------------------AGACA------AGCAGCAA-----CGCCAGCAG---CAGCA------------------ACAGCA------GCAGCAACAGCA------GCAG------------CAGCAGCG---------------GCAGCAGCAGCAGCAGCT----AAG------GCAGCAGCAA---CAATCAGCAACATC--
droEle1 scf7180000491046:3974321-3974541 - CTGTTGCTGC---TGTTGCTGATGTTGT-TGTTG------------------------------------------TTGC---TTTT----AT---------------------------------------------------------------------------------TG------------------------------------------TCGGTT----------GACTCC----------------------------------------AATCTGCTTTGGTTGCTGCG---------CCACACGACGAC-----------------------------------------------------------------------------------------------------------------------------GAC---GAC---GGCCGCCTGGCTCGT---GCCACT---GCCACTGCCAGCAGCAGCAA------------------------------------------------------------------------------------------------------------------CATCAGCAACACCAACAGCA------------ACAGC---------AGCAGCA---------GCAGCAG------------CAACGCCA---------------ACACCAACAGCAACAGCA----ACG------GCA---GCAA---CA-TGAGCTAACCA--
droRho1 scf7180000779538:296662-296862 + ACGATGCTCC---TGCTCCTGCTGATGT-TGTTT------------------------------------------TTAC---TGTT----GT---------------------------------------------------------------------------------TG------------------------------------------CTGTTGAAGGC---------------------------------------------------AAGCTGCATAGG-CGCTGCAAACATACA----GAAAACCGA-----------------------------------------------------------------------------------------------------------------------------GTC---AAC---AAG--C---------------------GACTGATG----------------------------------------------------CTGCCGTTGCAGCTGCAGCA---------------------------GGAAGTCC------------A-----------------ACAGCAACA------------GCAGC------------AGCA------GCAGCAGCAG------------CAGCAGCA---------------GCAGCAGCAGTAACAGCA----ACA------GCA--------GC-----------AAC--
droBia1 scf7180000302402:3169068-3169266 - GCGTTGATGC---CGTTGCAGCTGC--------------------------------------------------------------------------------TGCTGCGCAGC------------CAGCAA-------------------------------------------------------------------------------------------CAGCA---------------------------------------------------------------------------ATACG--AGCAGCAGCA-----------------------------------------------------------------------------------------------------------------------------ACAGCAGC---AGCAGC---------------------AACACTAG---CAGCAGCAAC---AGCAGCAGCA-------------------------------------------------------------------------GCA------ACA---A-----------CACCAGCAA---CAGCG------------------ACAGCAACAGCGACAGCAACAGCA------GCTACGCCAGCAGCAACAGCAGCA---------------GCAACAGCAGCAGCAGCG----CCA------GCA--------GC-----------AGC--
droTak1 scf7180000415367:11580-11800 + GA--TAATCA---TACAAAACCAGATGATACTCA------------------------------------------AT------GC--------------------------CAGC------------CATCAGC-----------------A---GCAGCAGCA--------------------------------------------------------------------------------------------------------------------------------------------ACATC--CTCAGCA--------------------------------------------------------------------------------------------------------------------------------------------GCAGC---------------------AACACCAG---CAGCAGCAGC---AACAACAGCAGCAGCAACATGTGGCCCATGGGAAGAAGGCA---------------GCCAG---------AA----------------------A---A-----------CACCAGCAA---CATCT---ACAGCAGCAACAGCAAC------------AGCA------GCAACAGCAA------------CAACAGCA---------------ACAACAGCAGCAACAGCA----GCA------GCA--------GC-----------AAC--
droEug1 scf7180000409711:4353772-4353997 + ATGACCAGCC---AGGTGATG-------------------------------------------TC---------------G-------------CCACAAAGTCCGCTGGGCAGCTCCTCTGCTGGCA------------------------ATCAGGCTAATAACAACAA--TAATA------------------------------------------------------------------------------------------------------------------------------ACA-----ACA---ACA-----------------------------------------------------------------------------------------------------------------------------------------ATAGC---------------------AGCACCAA---CAACAATAAT---AACAATAACA----------------------------------------------ATAAC---------GAGGA--------GCAAGTTAAACA-----------------CCACCAG------CAACA------------ACAAC------------AACAACAGCA------ACAA------------CAGCAAGC---------------AT--CCAGCAT------AGCAG----CCGCTGCAGCAGCCGC--CATGTACATGGATC--
dm3 chrX:8103386-8103598 + ACGAGGATCT---GGACGATGATGACGA-TGTGG------------------------------------------ATGG---GGCAAACTAT--------------------------------------TGTGGCATAACCTATATAAGCT---ACAACAACA-------------------------------------------------------------------------------------------------------------------------------------------AACATG--CCCA----------------------------------------------------------------------------GTT---------------------------------------------GC------------CGACGACAAC---ATTGCCGGCGACGACCGCATTGCCAG---CGGCAGCTGC---ATCATTGGCC----------------------------------------------ACA--------------------------------------------------------------ACGGCGGCG------------AT-TT------------ACCA------ACAGAGGCAG------------CAGCAACA---------------ACATCAGCAGCAGCAGCA----ACA------GCA--------GC-----------AGC--
droSim2 3l:9459888-9460105 + ATTCCTATCTCTATCAAAAGGATAGCGA-TGCCGGCAATTATAT-------------------GAC---------------G-------------GAGCA------------GAGC-----TACTGGCA------------------------GCAGCACCAGCA--------------------------------------------------------------------------------------------------------------------------------------------ACATC--ACCACCAAC-----------------------------------------------------------------------------------------------------------------------------AGC---AGC---------------------------------AGCAG---CAGCATCAAC---AGCAACAGCAGCAGCAACA-------------------------------------------------------------------------------G-----------CATCAGCAG---CAGCA---GCAGCAGCAACATCAAC------------AGCA------GCAACATCAA------------CAGCAGCA---------ACA---CCAACAGCAGCAACAGCA----ACA-----------------------GAAGCAGCTC--
droSec2 scaffold_34:422075-422299 + GTGATGACCA---ATTTCTCCATGATGG-ACTCG------------------------------------------CC---GCCGCA------GC---------------------------------CATCATC---------------------GCAACAGCA---ATTGCC-----------------------------------------------------------------------------------------------------------------------------------ATCTG--CCCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------AGT---------------------CTC---AG---CAGCAGCAG------CAACAGCAGCAGCAACAGGCGGCGGTG-------GTGCTGCAGCAGGTGCAACA---------------------------GCAGGT-----------------------------------GCAACA------------GCA------------GCAGAAGCACCA------GCAA------------CACCAAGT---------------GCAGCAGCAGCAACAGCAACAG----GGGCTGCACCAGCC--------AACATCGGCC--
droYak3 X:12254029-12254252 - GTGATGACCA---ATTTCTCCATGATGG-ACTCG------------------------------------------CC---GCCGCA------GC---------------------------------CATCATC---------------------GCAGCAGCA---ATTGCC-----------------------------------------------------------------------------------------------------------------------------------ATCTG--CTCAGCAGCA-----------------------------------------------------------------------------------------------------------------------------ACAG---C------AGT---------------------CTC---AG---CAGCAGCAGCAGCAACAACAGCAGCAGCAACAGGCGGCG-------------------------------------------------------------------------G--------------------------T---GCTGCAGCAGGTGCAACAGCA------GCAAAAGCACCA------GCAA------------CACCAGGT---------------GCAGCAGCAGC------AACAG----GTGCTGCACCAGCCAC--CATCGGCCCAGTCCAT
droEre2 scaffold_4690:11940590-11940815 - CAGATGATGA---TGATGATGATGACGA-TGCTG------------------------------------------GTGA---TGCA----GA---------------------------------------------------------------------------------CG------------------------------------------ACGATTAC-----------------------------------------------------------------------------------------GATGAT-GACGACGTTGCCGAGTTGCAGTTTCAAGAGCCACAACACAAT--GCCA----------------------AGT---------------------------------------------GC------------------------------------------------------------------------------CAACAACAAGC--------------------------------------------------TGAGCGAAGGGGGAAATTA------AGTGCCAAAGGC-----A------ACCGCAGCA------------AC----------------ATA------GCA------------ACAGCAACAGCAGCA---------------GCAGCAGCAGCAGCAGCA----GCA------GCAACAGCGA----AAAGATTTTTCTC--

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
ATGATGATCG---TGTTGGTCGTGATGA-TGTTG------------------------------------------CTGC---TGGC-----------------------------------------CAT--------------------------------------------G------------------------------------------ACCGTGACGTCAATA---------------------------------------------------CACAT------------------ATA--CT-AGCAC-------------------------------------------------------------------------------------------------------ATGCACGCAATACGCACGCCGGCAAC---AACAACGAC---ATCATTGAC------------------------------------------GCTA----------------------------------------------ATGAT---------GAG-------------------------GTGTCAACGGCACGTGAACAACAACAGCAACA------------ACATC------------AGCA------GCAGCAGCAA------------CAGCAGCA---------------ACACCAGCAGCAGCAGCA----ACA------GCAGCAGCCT---CATTTATCTAGTTC--SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC------------AGCA------GCAGCAGCAA------------CAGC...............................................................................20200.102200000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA----ACA------GCAGCAGC.....................20200.102200000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACA------------ACATC------------AGCA------GCAGC....................................................................................................20130.081010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC------------AGCA------GCAGCAGCAA------------CAGCAGCA---------------............................................................25140.071000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------------ACATC------------AGCA------GCAGCAGCA................................................................................................20200.051000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA---------------ACACCAGCAGCAGCAGCA----......................................21200.051100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA------------ACATC------------AGCA------GCAGCAGC.................................................................................................21200.051100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------------ACACCAGCAGCAGCAGC...........................................19200.051001000
droVir3
ATGATGATGA---TGTTGCTGATGATGA-TGTTG------------------------------------------CTGA---TGAT----GA---------------------------------------------------------------------------------TGATGATGATGATGAGGGGAATGCGTATGTGAGTGCTGGCCATGACCATGACGTCAATA---------------------------------------------------CACAA------------------AT----------------------------------------------------------------ACAAACAC------------------------------------------ATTTACGCAATACGCAAGCCGGCAAC---AAGCACGAC---AACATTGAC------------------------------------------GCTA----------------------------------------------ATGAC---------GAG-------------------------GTGTCAACGGCACGTGAACGACAACA------------------------------------------------------------------------------------------------------ACAACA-------------ACAGCAGCCA---CATTTATCTAGTTC--SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................TGAT----GA---------------------------------------------------------------------------------TGATGATGATGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20201.40280000000000000000000000000000000280000000000000000000000000000000
..................................................................................................................................................................................GATGATGATGAGGGGAATGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000001000000000000000000000000000
...................................................................................................................................................................................ATGATGATGAGGGGAATGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000100000000000000000000000000000000000000000000000000000
...................................................................................TGAT----GA---------------------------------------------------------------------------------TGATGATGATGATGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.9519000007000000000000000000000000000005000700000000000000000000000
.............................................................................TGA---TGAT----GA---------------------------------------------------------------------------------TGATGATGATGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.65130000000000000000013000000000000000000000000000000000000000000000
...............................................................................A---TGAT----GA---------------------------------------------------------------------------------TGATGATGATGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.306000000040020000000000000000000000000000000000000000000000000000
..............................................................................GA---TGAT----GA---------------------------------------------------------------------------------TGATGATGATGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.204000000000000000000000000000000040000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA------------------------------------------------------------------------------------------------------ACAACA-------------ACAGCAGCCA---C...............2160.171000000000000001000000000000000000000000000000000000000000000000
..............................GTTG------------------------------------------CTGA---TGAT----GA---------------------------------------------------------------------------------TGATGATGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2460.171001000000000000000000000000000000000000000000000000000000000000
..............................................................................GA---TGAT----GA---------------------------------------------------------------------------------TGATGATGATGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.153001000000000000000000000000200000000000000000000000000000000000
.............................................................................TGA---TGAT----GA---------------------------------------------------------------------------------TGATGATGATGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.153000003000000000000000000000000000000000000000000000000000000000
..GATGATGA---TGTTGCTGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1990.111000000000010000000000000000000000000000000000000000000000000000
....................GATGATGA-TGTTG------------------------------------------CTGA---TG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1990.111000000000010000000000000000000000000000000000000000000000000000
......................TGATGA-TGTTG------------------------------------------CTGA---TGAT----....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19100.101000000000000000000000000000000000000000000000000000000000001000
............................................................................CTGA---TGAT----GA---------------------------------------------------------------------------------TGATGATGATGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102000000000000001000000000000001000000000000000000000000000000000
....TGATGA---TGTTGCTGATGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19100.101000000000000000000000000000000000000000000000000000000000001000
.............................................................................TGA---TGAT----GA---------------------------------------------------------------------------------TGATGATGATGATGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.102000002000000000000000000000000000000000000000000000000000000000
...........................................................................................GA---------------------------------------------------------------------------------TGATGATGATGATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.102000000200000000000000000000000000000000000000000000000000000000
...............................................................................A---TGAT----GA---------------------------------------------------------------------------------TGATGATGATGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.102000000000000000000000000000000000000200000000000000000000000000
.................................G------------------------------------------CTGA---TGAT----GA---------------------------------------------------------------------------------TGATGATGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.102000000000000000000000000000000000000000000000000000000000002000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA------------------------------------------------------------------------------------------------------ACAACA-------------ACAGCAGCCA---................21130.081000010000000000000000000000000000000000000000000000000000000000
.................................G------------------------------------------CTGA---TGAT----GA---------------------------------------------------------------------------------TGATGATGATGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGACAACA------------------------------------------------------------------------------------------------------ACAACA-------------ACA..........................19200.051001000000000000000000000000000000000000000000000000000000000000
......................................................................................T----GA---------------------------------------------------------------------------------TGATGATGATGATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000000000100000000000000000000000000
................................TG------------------------------------------CTGA---TGAT----GA---------------------------------------------------------------------------------TGATGATGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000100000000000000000000000000000000000000000000000000000
.....................................................................................AT----GA---------------------------------------------------------------------------------TGATGATGATGATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000000000000000000000000000000010
...................................................................................TGAT----GA---------------------------------------------------------------------------------TGATGATGATGATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000010000000000000000000000000000000000000
.................................G------------------------------------------CTGA---TGAT----GA---------------------------------------------------------------------------------TGATGATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACA------------------------------------------------------------------------------------------------------ACAACA-------------ACAGCA.......................19200.051000000000000000001000000000000000000000000000000000000000000000
....................................................................................GAT----GA---------------------------------------------------------------------------------TGATGATGATGATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000000000000000000000000000000010
............................................................................CTGA---TGAT----GA---------------------------------------------------------------------------------TGATGATGATGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000010000000000000000000000000000000
................................TG------------------------------------------CTGA---TGAT----GA---------------------------------------------------------------------------------TGATGATGATGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000001000000000000000000000000000000000
...............................................................................A---TGAT----GA---------------------------------------------------------------------------------TGATGATGATGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000010000000000000000000000000000000000000000000000000000000
....................................................................................GAT----GA---------------------------------------------------------------------------------TGATGATGATGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000000000010000000000000000000000000
.................................G------------------------------------------CTGA---TGAT----GA---------------------------------------------------------------------------------TGATGATGATGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000000000000000000000000000001000
................................TG------------------------------------------CTGA---TGAT----GA---------------------------------------------------------------------------------TGATGATGATGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000000000000000000000000000000001000
droGri2
ATGATGATGA---CGATGATGGGAATGC-GTATG------------------------------------------TGAA---TGCT----GT---------------------------------------------------------------------------------CC---------------------------------------ATGACCATGACGTCAATGTGGCCGCAGTGAG---------------------------------------------------------------------------------------------ACAATCCCAAAT----------------------ACAACCACACTCACACTCAGATTCACACTCGCACTCGCACTCACATTCATATTCACGCACTACGCACGCCGGCAAC---GACAACGAC---AACATTGAC------------------------------------------GCTA----------------------------------------------ATGAC---------GAG-------------------------GTGTCATCGGCACGTGAACAACAACAACGA---------------CA------------------------------ACTG------------CAGCAACAGCAACAGCAACGACAACACCAGCAGC---AA----------------------------CATTTATCTAGTTC--SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAGCAACGACAAC..........................................................21120.08110
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------CAGCAACAGCAACAGCAACG...............................................................21180.06110
droWil2
TGATCG-TCT---TGCTATTCCCGATGA-TGCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCATGACGTCAATACGGCCCCATTGAGACATCGTTGTACACGCATTGCTGGTACTGCTGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAC------------------------------------------GCTA----------------------------------------------ATGAC---------AAG-------------------------GTGTCAACGGCACGTGAACAGCAACAGCAA---------------------------------------------------------------CAGCAACAGCCGCAGCCACAGCCGCATCAACAGC---AACT---T-----------GGGAACGAC--TACTTAGCTAGTTC--SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAGCAA---------------------------------------------------------------CAGCAAC............................................................................20200.05100001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAGCAA---------------------------------------------------------------CAGCAAC............................................................................21200.05100010
dp5
ACGATGACCA---GCCAGGTAAT----------------------------------------GTC---------------G-------------CCGCAGAGTCCGCTGGGCAGCTCCTCCGCTGGCA------------------------ATCAGACTAGCA--------------------------------------------------------------------------------------------------------------------------------------------ACAAT--AACA---ACA-----------------------------------------------------------------------------------------------------------------------------------------ACAGC---------------------ACCACCAA---CAACAATAAT---AATAATAACA----------------------------------------------ACAACAACAACACGGAGGA--------GCAGGTGAAACA-----------------CCACCA------------------------------------------------------ACAACAG------------CAGCAGCAGCAACA---------GCAGCAG------CAGCA----ACA------GCA------------ACAACAGGCCTC--SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACACGGAGGA--------GCAGGTGAA......................................................................................................................................................................................2511.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACACGGAGGA--------GCAGGTG........................................................................................................................................................................................2111.0010000010000
........................................................................................................................CCGCTGGCA------------------------ATCAGACTAGCA--------------------------------------------------------------------------------------------------------------------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACGGAGGA--------GCAGGTGAAACA-----------------C.................................................................................................................................................................2411.0010001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA----------------------------------------------ACAACAACAACACGGA..........................................................................................................................................................................................................1820.5010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------CAGCAGCAGCAACA---------GCAGCA......................................................21200.2040400000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA---------GCAGCAG------CAGCA----ACA------GCA------------..............21200.1020000000020
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------------------------------------------------------ACAACAG------------CAGCAGCAGCAACA---------............................................................23200.1020200000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACA---------GCAGCAG------CAGCA----A.....................................21200.0510000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------CAGCAGCAGCAACA---------GCAGC.......................................................21200.0510010000000
droPer2
ATGAAT--CA---GTC-----CAGCTCA-TCCTA----------GCTGCCAACTAAACGCAATTCCAATTCATAATTCGCCGCCGCC------GC---------------------------------C---------------------------GCAGCAGCC--------------------------------------------------------------------------------------------------------------------------------------------ACAGTCGCACAACAAC-----------------------------------------------------------------------------------------------------------------------------AAC---AAC---AGCAGCAA------C---------AGCAACAGTTG---------CAAC------------AGCTGCAACT----------------------------------------------------------------GCA------------AC--------------AGCA---ACAGCAGCA---GAATCAAC------------------AACA---------ACAACAG------------CAACAACAACAACAACAACAACAACAGCAGCAGC---AACA---TTCAGTAGCAGC-----------------ACTAGCAC--SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---ACAGCAGCA---GAATCAAC------------------AAC................................................................................................................2111.001010000
..............................................................................GCCGCCGCC------GC---------------------------------C---------------------------GCAGCAGCC--------------------------------------------------------------------------------------------------------------------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA---------ACAACAG------------CAACAAC............................................................................18200.051001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACAGCAGC....................................................19200.051001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAACAACAACAACAACAGC.......................................................26200.051010000
............................................................................................................................................................................................................................................................................................................................ACAAC-----------------------------------------------------------------------------------------------------------------------------AAC---AAC---AGCAGCAA------C---------.............................................................................................................................................................................................................................................................................................................20200.051010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAACAACAACAACAACAGCAG.....................................................28200.051010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAGCAGCAGC---AACA---.......................................21200.051010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAACAACAGCAGCA...................................................22200.051001000
droAna3
ATGAGGATGC---CGCTGACGATGACGA-TGACG------------------------------------------T-------------------------------TGCGCGGCGGC---------CGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATAGAATTAGAAAAGCGGGAGCCAAATACATCAAC-----------------------------------------------------------------AA---------------------------------------------------------------------CA----------------------------------------------ACAGCAGCCACGA-AAACG--------GAAAAATCAACAGAGGC--------------AGCA---ACAGCAACA------------GAA------------ACAGCAGCAGCA------GCAC------------CACCAAGA---------------GGAAAAGCAGCAACAGCAGTGG----AAGACGCGTCA----T--CGCCAGTGTTGTCC--SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAGCAGTGG----AAGA..............................2111.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------------------------------------------------------CA----------------------------------------------ACAGCAGCCACGA-AAACG--------GAA............................................................................................................................................................................................2411.001000001
......ATGC---CGCTGACGATGACGA-TGAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCGTCA----T--CGCCAGTGTT......2011.001100000
droBip1
AGGGTGTTCG---TGTGGAGGAG-G-------TG------------------------------------------CA---GCTTCA------GA-------------TAGCCAAC------------GAAC--------------------A---GCAGCAGCA--------------------------------------------------------------------------------------------------------------------------------------------ACACG--CCCAGCAGTT-----------------------------------------------------------------------------------------------------------------------------GCAG---C---------------------------------AACAGAAGC------------------TCCA----------------------------------------------ACAGCAGCAACGT-GAGGA--------GCGAATGCAGCTTTTGC--------------AGCA---ACAGCAACT------------GCAGC------------AGCA------GCAGCTGCAA------------CACCAACA---------------ACAGCACCTGCAGCAGCAACT-G---GAGCAG--------------------CAGCTC--SizeHit CountTotal NormTotal
No Reads
droKik1
TGGACGAGGA---TGTCGGCGAGGATGA-TGATG------------------------------------------ATGA---TGAT----GA---------------------------------------------------------------------------------GGATG---------------------------------------ACAACAACCTA----------------GAAACCGTC--ACAACAGTGCCTCAAACCAATGAA----------------------------------------------------------------------------------------------CAAC------------------------------------------------------------------------------------------TTAAC------------------------------------------GCTA----------------------------------------------AGGTC---------ATC-------------------------GT--------AACCACAACAACAACAACAG---------------CA------------TCTAGT------TCA------------TCATCAACAGCAGCA---------------GCAGCTGGAGGAGCAGCT----GGA------GCAACCAGCG---CATTAGCCAAGTTC--SizeHit CountTotal NormTotal
No Reads
droFic1
GCGTTGATGC---CGTTGCAGCTGC--------------------------------------------------------------------------------TGCTGCGCAGC------------CAGCGAC-----------------G---ACAGCAGCA--------------------------------------------------------------------------------------------------------------------------------------------ACAGC--AGCA---ACA-----------------------------------------------------------------------------------------------------------------------------------------GCAGC---------------------AACACGAG---CAGCAGCAGC---AACAACAGCAACAGAAACA-------------------------------------------------------------------AGACA------AGCAGCAA-----CGCCAGCAG---CAGCA------------------ACAGCA------GCAGCAACAGCA------GCAG------------CAGCAGCG---------------GCAGCAGCAGCAGCAGCT----AAG------GCAGCAGCAA---CAATCAGCAACATC--SizeHit CountTotal NormTotal
No Reads
droEle1
CTGTTGCTGC---TGTTGCTGATGTTGT-TGTTG------------------------------------------TTGC---TTTT----AT---------------------------------------------------------------------------------TG------------------------------------------TCGGTT----------GACTCC----------------------------------------AATCTGCTTTGGTTGCTGCG---------CCACACGACGAC-----------------------------------------------------------------------------------------------------------------------------GAC---GAC---GGCCGCCTGGCTCGT---GCCACT---GCCACTGCCAGCAGCAGCAA------------------------------------------------------------------------------------------------------------------CATCAGCAACACCAACAGCA------------ACAGC---------AGCAGCA---------GCAGCAG------------CAACGCCA---------------ACACCAACAGCAACAGCA----ACG------GCA---GCAA---CA-TGAGCTAACCA--SizeHit CountTotal NormTotal
No Reads
droRho1
ACGATGCTCC---TGCTCCTGCTGATGT-TGTTT------------------------------------------TTAC---TGTT----GT---------------------------------------------------------------------------------TG------------------------------------------CTGTTGAAGGC---------------------------------------------------AAGCTGCATAGG-CGCTGCAAACATACA----GAAAACCGA-----------------------------------------------------------------------------------------------------------------------------GTC---AAC---AAG--C---------------------GACTGATG----------------------------------------------------CTGCCGTTGCAGCTGCAGCA---------------------------GGAAGTCC------------A-----------------ACAGCAACA------------GCAGC------------AGCA------GCAGCAGCAG------------CAGCAGCA---------------GCAGCAGCAGTAACAGCA----ACA------GCA--------GC-----------AAC--SizeHit CountTotal NormTotal
No Reads
droBia1
GCGTTGATGC---CGTTGCAGCTGC--------------------------------------------------------------------------------TGCTGCGCAGC------------CAGCAA-------------------------------------------------------------------------------------------CAGCA---------------------------------------------------------------------------ATACG--AGCAGCAGCA-----------------------------------------------------------------------------------------------------------------------------ACAGCAGC---AGCAGC---------------------AACACTAG---CAGCAGCAAC---AGCAGCAGCA-------------------------------------------------------------------------GCA------ACA---A-----------CACCAGCAA---CAGCG------------------ACAGCAACAGCGACAGCAACAGCA------GCTACGCCAGCAGCAACAGCAGCA---------------GCAACAGCAGCAGCAGCG----CCA------GCA--------GC-----------AGC--SizeHit CountTotal NormTotal
No Reads
droTak1
GA--TAATCA---TACAAAACCAGATGATACTCA------------------------------------------AT------GC--------------------------CAGC------------CATCAGC-----------------A---GCAGCAGCA--------------------------------------------------------------------------------------------------------------------------------------------ACATC--CTCAGCA--------------------------------------------------------------------------------------------------------------------------------------------GCAGC---------------------AACACCAG---CAGCAGCAGC---AACAACAGCAGCAGCAACATGTGGCCCATGGGAAGAAGGCA---------------GCCAG---------AA----------------------A---A-----------CACCAGCAA---CATCT---ACAGCAGCAACAGCAAC------------AGCA------GCAACAGCAA------------CAACAGCA---------------ACAACAGCAGCAACAGCA----GCA------GCA--------GC-----------AAC--SizeHit CountTotal NormTotal
No Reads
droEug1
ATGACCAGCC---AGGTGATG-------------------------------------------TC---------------G-------------CCACAAAGTCCGCTGGGCAGCTCCTCTGCTGGCA------------------------ATCAGGCTAATAACAACAA--TAATA------------------------------------------------------------------------------------------------------------------------------ACA-----ACA---ACA-----------------------------------------------------------------------------------------------------------------------------------------ATAGC---------------------AGCACCAA---CAACAATAAT---AACAATAACA----------------------------------------------ATAAC---------GAGGA--------GCAAGTTAAACA-----------------CCACCAG------CAACA------------ACAAC------------AACAACAGCA------ACAA------------CAGCAAGC---------------AT--CCAGCAT------AGCAG----CCGCTGCAGCAGCCGC--CATGTACATGGATC--SizeHit CountTotal NormTotal
No Reads
dm3
ACGAGGATCT---GGACGATGATGACGA-TGTGG------------------------------------------ATGG---GGCAAACTAT--------------------------------------TGTGGCATAACCTATATAAGCT---ACAACAACA-------------------------------------------------------------------------------------------------------------------------------------------AACATG--CCCA----------------------------------------------------------------------------GTT---------------------------------------------GC------------CGACGACAAC---ATTGCCGGCGACGACCGCATTGCCAG---CGGCAGCTGC---ATCATTGGCC----------------------------------------------ACA--------------------------------------------------------------ACGGCGGCG------------AT-TT------------ACCA------ACAGAGGCAG------------CAGCAACA---------------ACATCAGCAGCAGCAGCA----ACA------GCA--------GC-----------AGC--SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............GGACGATGATGACGA-TGTGG------------------------------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2019.0090000000000000000000000000000000000000000000000000000000003510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GACGATGATGACGA-TGTGG------------------------------------------AT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GGACGATGATGACGA-TGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1914.0040000000000000000000000000000000000000000000000000000000002200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GACGATGATGACGA-TGTGG------------------------------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA---------------ACATCAGCAGCAGCAGCA----AC....................................2422.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................CAAACTAT--------------------------------------TGTGGCATAACCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GACGATGATGACGA-TGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTGC---ATCATTGGCC----------------------------------------------ACA--------------------------------------------------------------ACGGCGGC.................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................T---------------------------------------------GC------------CGACGACAAC---ATTGCCGGCGACGAC.............................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......ATCT---GGACGATGATGACGA-TG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
........CT---GGACGATGATGACGA-TGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGGCGACGACCGCATTGCC....................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCG------------AT-TT------------ACCA------ACAGAGGCAG------------CAGC...............................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GGACGATGATGACGA-TGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CT---GGACGATGATGACGA-TGTGG------------------------------------------ATGG---G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCC----------------------------------------------ACA--------------------------------------------------------------ACGGCGGCG------------AT-TT------------ACCA------AC.......................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................AACCTATATAAGCT---ACAACAACA-------------------------------------------------------------------------------------------------------------------------------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................CAAACTAT--------------------------------------TGTGGCATAACCTATATAAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GGACGATGATGACGA-TC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17150.871300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GAGGATCT---GGACGATGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACA---------------ACATCAGCAGCAGCAGC...........................................2330.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCAGCAGCAGCA----AC....................................18200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------------ACATCAGCAGCAGCAGCA----AC....................................22150.2030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACA---------------ACATCAGCAGC.................................................1860.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA---------------ACATCAGCAGCAGCAGCA----......................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCA----ACA------GCA--------GC-----------AGC--21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------CAGCAACA---------------ACATCAGCA...................................................18140.1420000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------CAGCAACA---------------ACATCAGCA...................................................1990.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCAGCAGCAGCA----ACA------GCA--------GC-----------.....24100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............GGACGATGATGACGA-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------ACATCAGCAGCAGCAGCA----AC....................................21150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAGCAGCAGCAGCA----ACA------GC...........................22150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCA----ACA------GCA--------GC-----------A....23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------ACATCAGCAGCAGCAGCA----......................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA----ACA------GCA--------GC-----------A....18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCA----ACA------GCA--------GC-----------AGC--22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCA----ACA------GCA--------GC-----------A....21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------------ACATCAGCAGCAGCAGC...........................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCAGCAGCAGCAGCA----ACA------.............................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCA----ACA------GCA--------GC-----------AGC--24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------------ACATCAGCAGCAGCAG............................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCA----ACA------GCA--------GC-----------.....22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------------ACATCAGCAGCAGCAGCA----ACC------.............................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GACGATGATGACGA-T.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ATTCCTATCTCTATCAAAAGGATAGCGA-TGCCGGCAATTATAT-------------------GAC---------------G-------------GAGCA------------GAGC-----TACTGGCA------------------------GCAGCACCAGCA--------------------------------------------------------------------------------------------------------------------------------------------ACATC--ACCACCAAC-----------------------------------------------------------------------------------------------------------------------------AGC---AGC---------------------------------AGCAG---CAGCATCAAC---AGCAACAGCAGCAGCAACA-------------------------------------------------------------------------------G-----------CATCAGCAG---CAGCA---GCAGCAGCAACATCAAC------------AGCA------GCAACATCAA------------CAGCAGCA---------ACA---CCAACAGCAGCAACAGCA----ACA-----------------------GAAGCAGCTC--SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................T-------------------GAC---------------G-------------GAGCA------------GAGC-----TACTGGCA------------------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
.........TCTATCAAAAGGATAGCGA-TGCCGGCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACA-------------------------------------------------------------------------------G-----------CATCAGCAG---CAGCA---................................................................................................................................................2150.20100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG---CAGCA---GCAGCAGC........................................................................................................................................18200.05100000000001000000
..........................................................................................................................................................................................................................................................................................................................CACCAAC-----------------------------------------------------------------------------------------------------------------------------AGC---AGC---------------------------------AGCAG---CA.............................................................................................................................................................................................................................................................................................20200.05110000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGCAGCAACA-------------------------------------------------------------------------------................................................................................................................................................................................19200.05100000000000100000
droSec2
GTGATGACCA---ATTTCTCCATGATGG-ACTCG------------------------------------------CC---GCCGCA------GC---------------------------------CATCATC---------------------GCAACAGCA---ATTGCC-----------------------------------------------------------------------------------------------------------------------------------ATCTG--CCCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------AGT---------------------CTC---AG---CAGCAGCAG------CAACAGCAGCAGCAACAGGCGGCGGTG-------GTGCTGCAGCAGGTGCAACA---------------------------GCAGGT-----------------------------------GCAACA------------GCA------------GCAGAAGCACCA------GCAA------------CACCAAGT---------------GCAGCAGCAGCAACAGCAACAG----GGGCTGCACCAGCC--------AACATCGGCC--SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGCGGCGGTG-------GTGCTGCA......................................................................................................................................................................................................................................2211.0010010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA------------GCA------------GCAGAAGCACCA------GCA................................................................................................2211.0010001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGCGGCGGTG-------GTGCT.........................................................................................................................................................................................................................................1911.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAACAGGCGGCG........................................................................................................................................................................................................................................................2130.3310001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAGGCGGC.........................................................................................................................................................................................................................................................1840.2510010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG------CAACAGCAGCAGCAACA...............................................................................................................................................................................................................................................................21200.0510010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAACAGCAACA.......................................21200.0510010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---CAGCAGCAG------CAACAGCAGC......................................................................................................................................................................................................................................................................21200.0510010
droYak3
GTGATGACCA---ATTTCTCCATGATGG-ACTCG------------------------------------------CC---GCCGCA------GC---------------------------------CATCATC---------------------GCAGCAGCA---ATTGCC-----------------------------------------------------------------------------------------------------------------------------------ATCTG--CTCAGCAGCA-----------------------------------------------------------------------------------------------------------------------------ACAG---C------AGT---------------------CTC---AG---CAGCAGCAGCAGCAACAACAGCAGCAGCAACAGGCGGCG-------------------------------------------------------------------------G--------------------------T---GCTGCAGCAGGTGCAACAGCA------GCAAAAGCACCA------GCAA------------CACCAGGT---------------GCAGCAGCAGC------AACAG----GTGCTGCACCAGCCAC--CATCGGCCCAGTCCATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................................................................................................................................CTG--CTCAGCAGCA-----------------------------------------------------------------------------------------------------------------------------ACAG---C------AGT---------------------CTC---A...................................................................................................................................................................................................................................................................................................2511.00100001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGGCGGCG-------------------------------------------------------------------------G--------------------------T---GCTGCAGCAG......................................................................................................................................2511.00100000000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCAGGTGCAACAGCA------.....................................................................................................................1920.50101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAGCAGCA..................................................................................................................................................................................................................................................................17200.25500000000005
droEre2
CAGATGATGA---TGATGATGATGACGA-TGCTG------------------------------------------GTGA---TGCA----GA---------------------------------------------------------------------------------CG------------------------------------------ACGATTAC-----------------------------------------------------------------------------------------GATGAT-GACGACGTTGCCGAGTTGCAGTTTCAAGAGCCACAACACAAT--GCCA----------------------AGT---------------------------------------------GC------------------------------------------------------------------------------CAACAACAAGC--------------------------------------------------TGAGCGAAGGGGGAAATTA------AGTGCCAAAGGC-----A------ACCGCAGCA------------AC----------------ATA------GCA------------ACAGCAACAGCAGCA---------------GCAGCAGCAGCAGCAGCA----GCA------GCAACAGCGA----AAAGATTTTTCTC--SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..GATGATGA---TGATGATGATGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21170.0610000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA------------ACAGCAACAGCAGCA---------------............................................................18200.0511000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGCA---------------GCAGCAGCAGCA................................................25200.0510000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCAGCA---------------GCAGCAG.....................................................21200.0510000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCA---------------GCAGCAGCAGCA................................................22200.0511000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGCA---------------GCAGCAGC....................................................21200.0510001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAGCAGCA---------------GCAGC.......................................................20200.0510100000

Generated: 05/17/2015 at 11:25 PM