ID:

dmo_934

 Coordinate:

scaffold_6496:2563325-2563554 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.47 -22.32 -22.22

Flybase annnotation

CDS [Dmoj\GI19933-cds]; exon [dmoj_GLEANR_4829:1]; exon [dmoj_GLEANR_4829:2]; CDS [Dmoj\GI19933-cds]; intron [Dmoj\GI19933-in]

Repeatable elements

NameClassFamilyStrand
T-richLow_complexityLow_complexity+

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CATTGGCAGCTGTTCGTTAGATGTTGATGCGGATTCATCCGATATATCAGGTATACCAATACACGCACACGCACACGCACGCTTACCTAACCTCAATGTTGTGTATGTGTATTTTCTTATTTGATTTTGATTTTGTTTTTTTGTTATTGGATTTCTTTTTTATCATTGCTGTTTTTTGTAGTGTTTTTTGTTGTTGATTTTTACATTGCATTTTTTTTTTTATTGTTTTCTTGTTCGCTTCTCTTAATTTGCATTTATTAAACTTTCAAACCATTTGCAGATACCAGCGGCAGTCTCAACTTTCCCACACCGCTTTCAGTTAAGGACATA
**************************************************.......((((((((.(((((.(((.....................)))))))).))))))))...........................((((...(((.............((((((........))))))..........((((..((((...((((..((...............................))..)))).....))))...)))).)))...))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body
.........................GATGCGGATTCATCCGATATATC.......................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0
................................................................................................................................................................TATCATTGCTGTTTTTTGTAGT.................................................................................................................................................... 22 0 1 1.00 1 1 0 0
..........................................................................................................................................................................................................................TTTATGGTTTTCTTGTTCCCC........................................................................................... 21 3 10 0.30 3 0 3 0
.......................................................................................................................................................................................CGTTTCGTTGTTGATTTTTAC.............................................................................................................................. 21 3 20 0.05 1 0 0 1

Anti-sense strand reads

GTAACCGTCGACAAGCAATCTACAACTACGCCTAAGTAGGCTATATAGTCCATATGGTTATGTGCGTGTGCGTGTGCGTGCGAATGGATTGGAGTTACAACACATACACATAAAAGAATAAACTAAAACTAAAACAAAAAAACAATAACCTAAAGAAAAAATAGTAACGACAAAAAACATCACAAAAAACAACAACTAAAAATGTAACGTAAAAAAAAAAATAACAAAAGAACAAGCGAAGAGAATTAAACGTAAATAATTTGAAAGTTTGGTAAACGTCTATGGTCGCCGTCAGAGTTGAAAGGGTGTGGCGAAAGTCAATTCCTGTAT
**************************************************.......((((((((.(((((.(((.....................)))))))).))))))))...........................((((...(((.............((((((........))))))..........((((..((((...((((..((...............................))..)))).....))))...)))).)))...))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 M060
embryo
 V056
head
........................................................................TGTGCGAGCGAATCGATTAGA............................................................................................................................................................................................................................................. 21 3 4 1.00 4 3 1 0 0
..........................................................................................................................................................................CACAAACCGTCACAAAAAACAACAA....................................................................................................................................... 25 3 2 0.50 1 1 0 0 0
.......................................................................GTGTGCGAGCGAATCGATTAGA............................................................................................................................................................................................................................................. 22 3 3 0.33 1 0 1 0 0
.....................................................ATGGTTCTGTGCGTTTGCGT................................................................................................................................................................................................................................................................. 20 2 5 0.20 1 0 0 1 0
..............................................................................................................................................................................................................................................................AGTAATGCGAAAGTTTGGTAA....................................................... 21 3 8 0.13 1 0 1 0 0
..........................................................TATGTGCGTGTGCGTGTGC............................................................................................................................................................................................................................................................. 19 0 9 0.11 1 0 1 0 0
........................................................................................................................................................................GACAAAAAACCTCACCAAGA.............................................................................................................................................. 20 3 16 0.06 1 0 0 0 1
.....................................................................................................................................................................................................................................................................................................AGAGTTTAAAGGATGCGGC.................. 19 3 17 0.06 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6496:2563275-2563604 + dmo_934 CAT-TGGC--AGCTGTTCGTTAGATGTTGATGCGGATTCATCCGATATATCAGGTATACCA-------ATACACGCACACGCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGCACGCTTA----------------CCTAACCTC-----------------------------------AATGTTGTGTATGTGTATTTT----------------------------CTTATTTGATTTTGATTTTGTTTTTT------TGTTATT----GG---------------------------------ATTTCTTTTTTATCATTGCTG------TTT-----T--TTGTA--------GTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTGTTGTTGATTTTTACATTGCATTT-----------------------------------------------TTT--TT-TTTATTGTTT-TCTTGTTCGCTTCT-----------------------------------------------------CTTAATTTGC------------------------------------------------------ATTTATTAAA--------------------CTTTCAAACCATTTGCAGATACCAGCGGCAGTCTCAAC--TTTCCCA-CACCGCTTTCAG--------------T-TAAGGACATA
droVir3 scaffold_10324:717779-718077 + dvi_769 CAT-TGGC--AGCTGTTCATTAGATGTTGATGCCGATTCATCCGACATATCAGGTATATCATTCACACACACACACACACACACA----------------------------------------------------------------------------------------------TGCACGCGCA---------------------------------------------------------------------------------------------------------------------------------------CCTAACCTC-----------------------------------AATGTTAT-------------------------TGT------GAGCTATCTTATTGGATTT-------------------------------------------TGTTCGTTTTCGTTTCTTATTCGATTTCTTTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTATTATTATATTTATTTTCT--------T-----------------------------------------TTGTTTATTGTTT-T-----------------------------------------------------TG------------TTAATTTGC------------------------------------------------------ATTTAACACACATTTTGCGTGCTCAA-------------CTCTTGCAGACACGAGCGGCAGCTTAAAC--TTTCCAA-CGCCCCTCTCCG--------------T-GAAGGACATA
droGri2 scaffold_14906:7094722-7094961 - ACA-CA-CACACACA--CACAC-----AC-------------------------------------------------------ACACACACACTTTGCACACAGTTCACAGTTAGTCACAGTTTTGTCAAAGTTGATCTTTT--TCAAATCTATTATTATTATTTT-------T---------------GCATTATG--TT----------------------------------------------------------------------------------------------------------------------------------------CTCAATTTTGGTTG------------------------------------------------------------------------------------------------------------------------TGTT---------------------------------------------------------GTGTT--------GTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTGTTGTTGTATTTTTTGTTTGTTTTGT--------T-----------------------------------------TT-------------------------------------------------------TTTTTTCTTTTTTTTTGTTTTT--CTTGT------------------------------------------------------------------------------------------------------TGC-GATAGAAACGCGTGCCACAAC-----------------GTCGC--------------G-GTTGCAGTTG
droWil2 scf2_1100000004382:1241534-1241857 + CAT-CGGC--AGCTGTTCACTCGATGTAGATGCCGACTCATCCGAAATATCAGGTATCCT-------------------------------------------------------------------------------------------------------------------------------------CCCCTCACCCTCACCAT------------------------------------------------------------------------------------------CACTGTG--TTCCTCCTAACAAGCCCTAACCTCACATTCTGCGTGAGAGGGGCGCCCCGTTTCTTCTTCT------------------TTTTGATTGCTTTTT--------------------------------------------------------------------------------------------------------------------------GTTTGTGATGATT--------GCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGTTGTTGTTGCGTTTCCCCCCGTTGTC----------------------------------------------------------------------------------------TTGCATCGTTAAACAACTGATTAAAATGTATGCCGACTCTTCTAATTATT-----------------------------G----------AAT-GTTGCTCCATTTTCCAGATACCAGTGGCAGCCTGAAC--TTCCCAA-CGCCACTATCTG--------------T-GAAGGATATA
dp5 3:15129826-15130135 - CAT-TGGC--AGCTGTTCACTCGATGTAGATGCGGACTCTTCCGATATATCAGGTATATGGT--------ATA------------------------------------TG----------------------------------------------------------ATATGTGGGTTGCTGCCGAA---------------------------------------------------------------------------------------------------------------------------------------CCTAACCTC-----------------------------------AATCAGAA-------------------------TGCTGCCTCGAA-------------------------------------------------TTT------ATTTA----------------------------------------TTGGTTTTCCTTT-------TGTT--------T-------------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------------GCG---------------------------------------------------------------------------------------------------TTTCAACTACTTCTGCCTGCTCTTTGCTGTATT-TTTTGTTCCTTTGCTTGCGTTCGTTCGCGACTTGATTGGCCAAAAGA--GACTAA------CTCTGA--------ATCTTTTTTCTATGA------------------------------------------CATATTGCAGATACCAGTGGCAGCCTAAAC--TTTCCAA-CGCCGCTTTCTG--------------T-GAAGGACATA
droPer2 scaffold_4:3920936-3921252 + CAT-TGGC--AGCTGTTCACTCGATGTAGATGCGGACTCTTCCGATATATCAGGTATATGGT--------ATA-----------------------------TGGTATATG----------------------------------------------------------GTATGTGGGTTGCTGCCGAA---------------------------------------------------------------------------------------------------------------------------------------CCTAACCTC-----------------------------------AATCTGAA-------------------------TGCTGCCTCGAA-------------------------------------------------TTT------ATTTA----------------------------------------TTGGTTTTCCTTT-------TGTT--------T-------------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------------GCG---------------------------------------------------------------------------------------------------TTTCAGCTACTTCTGCCTGCTTTTTGCTGAATT-TTTTGTTTCTTTGCTTGCGTTCGTTCGCGTCTTGATTGGCCAAAAGA--GACTAA------CTCTGA--------ATCTTTTTTCTATGA------------------------------------------CACATTGCAGATACCAGTGGCAGCCTAAAC--TTTCCAA-CGCCGCTTTCTG--------------T-GAAGGACATA
droAna3 scaffold_13266:19241049-19241299 - CAT-TGGC--AGCTGTTCACTTGATGTAGACGCGGACTCGTCTGACATATCAGGTACATGA---------------------------------------------------GCAA-------------------------------------------------------------------CGCTTAGCC-TGC--------------------------------------------------------------------------------------------------------------------------------CTTAACCTG-----------------------------------AATTTGAT-------------------------TGCCGCC-------------------CTTG-----------------------------------------------------TTA-----------------------------------CTC-----T--TTG---------------------------------------------------------------------------------------------TTTCTTTGGCTG------------------------------------------------------TTTTTTG---------------------------------------------------------T---GTTGGTGTCCGACATTGTT------------------------------TGTT-----------TT---------------------------T--------------------------------------------------GAAA----------AAC------------------------------------------------TTCTGTGCTCTTATCCATCATTCATTCATATTGCAGATACCAGTGGTAGCCTAAAT--TTTCCTA-CGCCGATCTCTG--------------T-AAGGGACATC
droBip1 scf7180000396710:132986-133230 + CAT-TGGC--AGCTGTTCACTTGATGTAGACGCGGACTCGTCTGACATATCAGGTACATGA---------------------------------------------------GCAA------------------------------------------------------------------TCGCGAA---------------------------------------------------------------------------------------------------------------------------------------GCTTGCCTT-----------------------------------AACCTGG----------TTTT---------TGTTGCCACC-------------------CTCG-----------------------------------------------------TTTCTTTTTC-----------------------------------------G---------------------------------------------------------------------------------------------ATTCTTTGGCTT------------------------------------------------------TTTTTTG---------------------------------------------------------T---GG------TCGAC-TTGTT------------------------------GGTT-----------TT---------------------------T--------------------------------------------------GAAA----------AAT------------------------------------------------TTTTGGGCTCTTATCCAT-GTTTGTTCATATTGCAGATACCAGTGGCAGCCTTAAT--TTTCCAA-CACCGATCTCTG--------------T-AAGGGACATA
droKik1 scf7180000302281:18386-18646 - GAT-TGGC--AGCTGTTCACTTGATGTAGACGCAGACTCTTCCGACATATCAGGTATTTGA---------------------------------------------------G--------------------------------------------------------------------CTGATGAAGCTTTGGCTCAATCTGACAATTTACTGTTTTTTGTTGGAGTCACCCTGCGCACGTATTGGTTTTGTTATCGTTTGTTTGTTTCTAATGTTATTTCGGTATAGCCCCCCACAAACG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTCTGA----------CCTAAATTT----------------------TACGTTTCCAGATACCAGTGGCAGCCTGAAC--TTTCCCA-CGCCGCTTTCTG--------------T-GAAGGACATC
droFic1 scf7180000454073:1166298-1166495 + GGA-TTTT--TCTTTATTCTCT-------------------------------------------------------------------------------------------------------------------------------G-------CTA-T--TTT-------T---------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCGGCTTTCTC----TGGGCTTGGTGTTTCTT----------------------------------------------TTT-----T--T------------TTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTGTTCAATGTTTCCTTTTCTTTTTG----------T---T---------------T------------------------------TTGTTT-------------------------------------------------------TTGTTGTGTTTTTTTTTGTCTAT--ATTTC---------------------------------------------------------------------------TCCTAC-------------------TTAGCATGCATTGCAGGCAGTCATTGACGTCTGCAACAGAACACGTAGG--------------C-AAA-GCAGCG
droEle1 scf7180000491249:7263506-7263652 + GCACTCGC--TCGTGTCCTCCT--T-------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTT-TTT--------------------------------------------------------------------------------------------------------------------------------CTT-----------------------------------------ATTTTTA----------TTTT---------TTTTTGTGCC-------------------TTTG-----------------------------------------------------ATT--------------------------------------------------------------------------------------------------------------------------------------TTTTTTTTTGTTCTTGGCTTTTTTGGAGTGGCTTGCGGCATTTTAGATTGTCGTCGAC----------------------------------------------------------------------------------------------------------------------------------------GT-CGTC-----------TC------------------------------------------------------------------------------------------------AAATTTTTTTATTTTT---------------------------------------------------------------------------------------------------------------------------TAGTGT
droRho1 scf7180000780087:46826-46955 - TTT-GTTT--ATTTGCCTTCGT----------------------------------------------------------------------------------------------------------------------------------------------CTC-------T---------------CCACCGCTTCTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCGCT---------------------------------------------CTG----AGTCT------CTCTC----------------------------------------TTTCTTCCTCTCT-------TCTC--------C-------------------------------------------C-----------------------------------------------------------------------------------------------------------------------------------------ATGTTTTCGGTGGTTGCTCTCCGTCTCTTTTTC-----------------------------------------------TTT--TT-TTTGTTGGTT-T--------------------------------------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTTC
droBia1 scf7180000301703:420396-420575 - CTT-TCAT--AATTTTATTGTTTTTT---------------------------------------------------------------------------------------------------------------------------ATTGATTTTTATTACTCTAAATTTCTGTGTTTTTTTTCTA---------------------------------------------------------------------------------------------------------------------------------------TCTGAATTT-----------------------------------ATTTTGCT-------------------------TAT-----------------------------------------------------------------------------------------------------------GGTCA------T----------GAGTT--------TTA---------------------------------------------------------------------------------------------------------------------------------------------------------TTT----------------------------TTCTTTATTATTTTTGAATTCGTTGGTTTTCT--------T-----------------------------------------CGGTTTAT-TCTT-TCTTTTTAACTTTTTCTGTTTATCCTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAGC
droTak1 scf7180000413414:164722-164952 + TTT-TCTT--ATTTTTTTGCTTTTTTTATTATTC-------------------------------------------------------------------------------------------------------------------------------------------------------------TATTATTTATTTCCATTTTTTATTATTTATTATTATTAACAACCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTCATATTTATTTATTTATATATTTTTTTTATTTTTTATTTTTTGTATTCTTTTTTATTTATTTATAATTTTTAATACTCTTTTTATTTATTGCCAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATAACAT--ATTTC-CTGGCTACAATTAATTAACTTATTTCTACATTCAAACATT
droEug1 scf7180000409490:1146577-1146778 + ACA-CA-TACAAACA--TACAA-AC-----------------------------------------------------------ATATACATGGGCCATATA--ATGT----G---------------------GTACATTA-------ATCGATAATTG-CATTTT-------T---------------TCGTTTCTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTGG----------TTGT--------------------------------------------------------------------------------------------------------------------------TGTTGTTGTTTTTTCTTTTTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG---------------------------------------------------------------------------------------------------TTGCAGTTGTTGCTGTTGCCGTTTTGCCCATTTCTTTTGCCACTTTTCATGCGTTGTCTC---------------------------------------------------------------------------------------------------------TCTCATGGCGCATGCCATTTGCA-----------------------------------------------------TTT
dm3 chr3L:14745022-14745247 - ACG-TTGT--TTTTGTATCTTTTTTAATTATAACTACACGTTTGTTTTATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAACAG---TTTTTCACTAG---------------------------------ATTTTTTTTAT-----TTCTA------TTA-----T--TAGTT--------TTGTTATTTGTTGTTCATATTGATTTAAACCTATATTAATATTTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-TGTC-----------TT------------------------------------------------------------------------------------------------GCGTTTTTAAGTTTTTTGTTTGTAACACC------------TTTCATCTACACAATCAACACATCTTCATG-TCCTGTTTCCGGCT-----------------------------------------------------GTAGTC
droSim2 x:13086388-13086547 - TTT-TATT--TATTTTGCCCGTGGCTTGTGTGTGTGCCTT-------------------------------------------------------------G---TAT----T---------------------TTTTTTTCTTCTATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTTCTTTT--------------------------------------------TTTTTTTT----TTGCTCTATCGT----------------------------------------TAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGT---------------------------------------------------------------------------------------------------------TTTCATTTCGCCTGCTGCGGTTTCAGTTGTCAT--TTTACTACAGCCGCTGTTAG--------------T-TAGTTATTTG
droSec2 scaffold_12:202971-203095 - TAT-TTGC--ACGTCTTCTGAT--T--------------------------------------------------------------------------------------------------------------------------------------------TG-------T---------------T--GAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGTTTTTC------AATTTTT----GG---------------------------------ATTTCTTTTTT-CCATTATTA------TTT-----TGA-GATT--------TTGTTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGTG---------------------------------------TGTGCGTTTGCCTTAATAAATTCGT--TT-CGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATT
droYak3 2L:9095127-9095359 + CAG-GCAG--ACCAATACACGG-GC---------------------------------------------------ACACACAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCACACTGACTC-------------ACTCTCTCC-----------------------------------AACATCTTCTAT-------------------------AAA-----------------------------------------------------------------------------------------------------------------------------------AAAGTAT---------------------------------------------------------------------------TTTTTGTACTCGCTTGACATTTTGTGGAT-ACGTCGGACGTCGGACGTCGTCG--GAAGTCGTCGCGAACTTTG-------CTTCTTTTTGCTCTTTCTCTTTTCTTTAGTCT---------------------------------------------------------------------------------------GT-CTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTCCACTTTTTACTTTTTGCCCATAT--CTCCTTG-CGCGTTTTTT-------------------------TAA
droEre2 scaffold_4690:3664456-3664626 + ACT-TACA-CACACA--CACGTC-------------------------------------------------------------ACTCTCACGCAACGTACA---TAT----G---------------------TTTTCTCTTTTCGCTT-------TCG-T--ACT-------T---------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCACTTGCTTT----TAGTCTTATTAT----------------------------------------TACTA------TTA-----T--TTGTT--------TCC-------------------------------------------C------------------------------------------TAGTTA---------------------------------------------------------------------------------------------------TT----------------------------------------------TATGCGTTTCGCCTTGTAGTT-TTTTTC-------------------------------------------------------TTTTTTTATTTCGTTTTGATTGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
CAT-TGGC--AGCTGTTCGTTAGATGTTGATGCGGATTCATCCGATATATCAGGTATACCA-------ATACACGCACACGCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGCACGCTTA----------------CCTAACCTC-----------------------------------AATGTTGTGTATGTGTATTTT----------------------------CTTATTTGATTTTGATTTTGTTTTTT------TGTTATT----GG---------------------------------ATTTCTTTTTTATCATTGCTG------TTT-----T--TTGTA--------GTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTGTTGTTGATTTTTACATTGCATTT-----------------------------------------------TTT--TT-TTTATTGTTT-TCTTGTTCGCTTCT-----------------------------------------------------CTTAATTTGC------------------------------------------------------ATTTATTAAA--------------------CTTTCAAACCATTTGCAGATACCAGCGGCAGTCTCAAC--TTTCCCA-CACCGCTTTCAG--------------T-TAAGGACATASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................GATGCGGATTCATCCGATATATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCATTGCTG------TTT-----T--TTGTA--------GT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
droVir3
CAT-TGGC--AGCTGTTCATTAGATGTTGATGCCGATTCATCCGACATATCAGGTATATCATTCACACACACACACACACACACA----------------------------------------------------------------------------------------------TGCACGCGCA---------------------------------------------------------------------------------------------------------------------------------------CCTAACCTC-----------------------------------AATGTTAT-------------------------TGT------GAGCTATCTTATTGGATTT-------------------------------------------TGTTCGTTTTCGTTTCTTATTCGATTTCTTTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTATTATTATATTTATTTTCT--------T-----------------------------------------TTGTTTATTGTTT-T-----------------------------------------------------TG------------TTAATTTGC------------------------------------------------------ATTTAACACACATTTTGCGTGCTCAA-------------CTCTTGCAGACACGAGCGGCAGCTTAAAC--TTTCCAA-CGCCCCTCTCCG--------------T-GAAGGACATASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGCTTAAAC--TTTCCAA-C.....................................2011.001000000000000000000000000000000000000100000000000000000000000000
......................................................................................................................................................................................ACGCGCA---------------------------------------------------------------------------------------------------------------------------------------CCTAACCTC-----------------------------------AATGTTAT-------------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000001000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACACGAGCGGCAGCTTAAAC--T.............................................2311.001000000000000000000000000100000000000000000000000000000000000000
.................CATTAGATGTTGATGCCGATTCAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000001000000000000000000000000000000
........................TGTTGATGCCGATTCATCCGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000100000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACACATTTTGCGTGCTCAA-------------CTCTT........................................................................2711.001000000000000000000000000000000000000000000000000000000000000001
..............GTTCATTAGATGTTGATGCCGATTCAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000001000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATATTTATTTT.........................................................................................................................................................................................................................................................................................................................15200.051000000000000000000000000000000000000000000000000100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTATATTTATTT..........................................................................................................................................................................................................................................................................................................................15200.051000000000000000000000000000000000000000000000000000000001000000
droGri2
ACA-CA-CACACACA--CACAC-----AC-------------------------------------------------------ACACACACACTTTGCACACAGTTCACAGTTAGTCACAGTTTTGTCAAAGTTGATCTTTT--TCAAATCTATTATTATTATTTT-------T---------------GCATTATG--TT----------------------------------------------------------------------------------------------------------------------------------------CTCAATTTTGGTTG------------------------------------------------------------------------------------------------------------------------TGTT---------------------------------------------------------GTGTT--------GTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTGTTGTTGTATTTTTTGTTTGTTTTGT--------T-----------------------------------------TT-------------------------------------------------------TTTTTTCTTTTTTTTTGTTTTT--CTTGT------------------------------------------------------------------------------------------------------TGC-GATAGAAACGCGTGCCACAAC-----------------GTCGC--------------G-GTTGCAGTTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
CAT-CGGC--AGCTGTTCACTCGATGTAGATGCCGACTCATCCGAAATATCAGGTATCCT-------------------------------------------------------------------------------------------------------------------------------------CCCCTCACCCTCACCAT------------------------------------------------------------------------------------------CACTGTG--TTCCTCCTAACAAGCCCTAACCTCACATTCTGCGTGAGAGGGGCGCCCCGTTTCTTCTTCT------------------TTTTGATTGCTTTTT--------------------------------------------------------------------------------------------------------------------------GTTTGTGATGATT--------GCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGTTGTTGTTGCGTTTCCCCCCGTTGTC----------------------------------------------------------------------------------------TTGCATCGTTAAACAACTGATTAAAATGTATGCCGACTCTTCTAATTATT-----------------------------G----------AAT-GTTGCTCCATTTTCCAGATACCAGTGGCAGCCTGAAC--TTCCCAA-CGCCACTATCTG--------------T-GAAGGATATASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGAAC--TTCCCAA-CGCCACTAT.............................2411.00101000
dp5
CAT-TGGC--AGCTGTTCACTCGATGTAGATGCGGACTCTTCCGATATATCAGGTATATGGT--------ATA------------------------------------TG----------------------------------------------------------ATATGTGGGTTGCTGCCGAA---------------------------------------------------------------------------------------------------------------------------------------CCTAACCTC-----------------------------------AATCAGAA-------------------------TGCTGCCTCGAA-------------------------------------------------TTT------ATTTA----------------------------------------TTGGTTTTCCTTT-------TGTT--------T-------------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------------GCG---------------------------------------------------------------------------------------------------TTTCAACTACTTCTGCCTGCTCTTTGCTGTATT-TTTTGTTCCTTTGCTTGCGTTCGTTCGCGACTTGATTGGCCAAAAGA--GACTAA------CTCTGA--------ATCTTTTTTCTATGA------------------------------------------CATATTGCAGATACCAGTGGCAGCCTAAAC--TTTCCAA-CGCCGCTTTCTG--------------T-GAAGGACATASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTTTTCTATGA------------------------------------------CATATTGCAG....................................................................2412.0020000000200
....TGGC--AGCTGTTCACTCGATGTAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-CGCCGCTTTCTG--------------T-GAAGGAC...2111.0010100000000
droPer2
CAT-TGGC--AGCTGTTCACTCGATGTAGATGCGGACTCTTCCGATATATCAGGTATATGGT--------ATA-----------------------------TGGTATATG----------------------------------------------------------GTATGTGGGTTGCTGCCGAA---------------------------------------------------------------------------------------------------------------------------------------CCTAACCTC-----------------------------------AATCTGAA-------------------------TGCTGCCTCGAA-------------------------------------------------TTT------ATTTA----------------------------------------TTGGTTTTCCTTT-------TGTT--------T-------------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------------GCG---------------------------------------------------------------------------------------------------TTTCAGCTACTTCTGCCTGCTTTTTGCTGAATT-TTTTGTTTCTTTGCTTGCGTTCGTTCGCGTCTTGATTGGCCAAAAGA--GACTAA------CTCTGA--------ATCTTTTTTCTATGA------------------------------------------CACATTGCAGATACCAGTGGCAGCCTAAAC--TTTCCAA-CGCCGCTTTCTG--------------T-GAAGGACATASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............GTTCACTCGATGTAGATGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000002
droAna3
CAT-TGGC--AGCTGTTCACTTGATGTAGACGCGGACTCGTCTGACATATCAGGTACATGA---------------------------------------------------GCAA-------------------------------------------------------------------CGCTTAGCC-TGC--------------------------------------------------------------------------------------------------------------------------------CTTAACCTG-----------------------------------AATTTGAT-------------------------TGCCGCC-------------------CTTG-----------------------------------------------------TTA-----------------------------------CTC-----T--TTG---------------------------------------------------------------------------------------------TTTCTTTGGCTG------------------------------------------------------TTTTTTG---------------------------------------------------------T---GTTGGTGTCCGACATTGTT------------------------------TGTT-----------TT---------------------------T--------------------------------------------------GAAA----------AAC------------------------------------------------TTCTGTGCTCTTATCCATCATTCATTCATATTGCAGATACCAGTGGTAGCCTAAAT--TTTCCTA-CGCCGATCTCTG--------------T-AAGGGACATCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................AA-------------------------------------------------------------------CGCTTAGCC-TGC--------------------------------------------------------------------------------------------------------------------------------CTTAACCTG-----------------------------------AATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002200000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-CGCCGATCTCTG--------------T-AAGGGACATC2511.001010000
droBip1
CAT-TGGC--AGCTGTTCACTTGATGTAGACGCGGACTCGTCTGACATATCAGGTACATGA---------------------------------------------------GCAA------------------------------------------------------------------TCGCGAA---------------------------------------------------------------------------------------------------------------------------------------GCTTGCCTT-----------------------------------AACCTGG----------TTTT---------TGTTGCCACC-------------------CTCG-----------------------------------------------------TTTCTTTTTC-----------------------------------------G---------------------------------------------------------------------------------------------ATTCTTTGGCTT------------------------------------------------------TTTTTTG---------------------------------------------------------T---GG------TCGAC-TTGTT------------------------------GGTT-----------TT---------------------------T--------------------------------------------------GAAA----------AAT------------------------------------------------TTTTGGGCTCTTATCCAT-GTTTGTTCATATTGCAGATACCAGTGGCAGCCTTAAT--TTTCCAA-CACCGATCTCTG--------------T-AAGGGACATASizeHit CountTotal NormTotal
No Reads
droKik1
GAT-TGGC--AGCTGTTCACTTGATGTAGACGCAGACTCTTCCGACATATCAGGTATTTGA---------------------------------------------------G--------------------------------------------------------------------CTGATGAAGCTTTGGCTCAATCTGACAATTTACTGTTTTTTGTTGGAGTCACCCTGCGCACGTATTGGTTTTGTTATCGTTTGTTTGTTTCTAATGTTATTTCGGTATAGCCCCCCACAAACG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTCTGA----------CCTAAATTT----------------------TACGTTTCCAGATACCAGTGGCAGCCTGAAC--TTTCCCA-CGCCGCTTTCTG--------------T-GAAGGACATCSizeHit CountTotal NormTotal
No Reads
droFic1
GGA-TTTT--TCTTTATTCTCT-------------------------------------------------------------------------------------------------------------------------------G-------CTA-T--TTT-------T---------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCGGCTTTCTC----TGGGCTTGGTGTTTCTT----------------------------------------------TTT-----T--T------------TTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTGTTCAATGTTTCCTTTTCTTTTTG----------T---T---------------T------------------------------TTGTTT-------------------------------------------------------TTGTTGTGTTTTTTTTTGTCTAT--ATTTC---------------------------------------------------------------------------TCCTAC-------------------TTAGCATGCATTGCAGGCAGTCATTGACGTCTGCAACAGAACACGTAGG--------------C-AAA-GCAGCGSizeHit CountTotal NormTotal
No Reads
droEle1
GCACTCGC--TCGTGTCCTCCT--T-------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTT-TTT--------------------------------------------------------------------------------------------------------------------------------CTT-----------------------------------------ATTTTTA----------TTTT---------TTTTTGTGCC-------------------TTTG-----------------------------------------------------ATT--------------------------------------------------------------------------------------------------------------------------------------TTTTTTTTTGTTCTTGGCTTTTTTGGAGTGGCTTGCGGCATTTTAGATTGTCGTCGAC----------------------------------------------------------------------------------------------------------------------------------------GT-CGTC-----------TC------------------------------------------------------------------------------------------------AAATTTTTTTATTTTT---------------------------------------------------------------------------------------------------------------------------TAGTGTSizeHit CountTotal NormTotal
No Reads
droRho1
TTT-GTTT--ATTTGCCTTCGT----------------------------------------------------------------------------------------------------------------------------------------------CTC-------T---------------CCACCGCTTCTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCGCT---------------------------------------------CTG----AGTCT------CTCTC----------------------------------------TTTCTTCCTCTCT-------TCTC--------C-------------------------------------------C-----------------------------------------------------------------------------------------------------------------------------------------ATGTTTTCGGTGGTTGCTCTCCGTCTCTTTTTC-----------------------------------------------TTT--TT-TTTGTTGGTT-T--------------------------------------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTTCSizeHit CountTotal NormTotal
No Reads
droBia1
CTT-TCAT--AATTTTATTGTTTTTT---------------------------------------------------------------------------------------------------------------------------ATTGATTTTTATTACTCTAAATTTCTGTGTTTTTTTTCTA---------------------------------------------------------------------------------------------------------------------------------------TCTGAATTT-----------------------------------ATTTTGCT-------------------------TAT-----------------------------------------------------------------------------------------------------------GGTCA------T----------GAGTT--------TTA---------------------------------------------------------------------------------------------------------------------------------------------------------TTT----------------------------TTCTTTATTATTTTTGAATTCGTTGGTTTTCT--------T-----------------------------------------CGGTTTAT-TCTT-TCTTTTTAACTTTTTCTGTTTATCCTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAGCSizeHit CountTotal NormTotal
No Reads
droTak1
TTT-TCTT--ATTTTTTTGCTTTTTTTATTATTC-------------------------------------------------------------------------------------------------------------------------------------------------------------TATTATTTATTTCCATTTTTTATTATTTATTATTATTAACAACCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTCATATTTATTTATTTATATATTTTTTTTATTTTTTATTTTTTGTATTCTTTTTTATTTATTTATAATTTTTAATACTCTTTTTATTTATTGCCAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATAACAT--ATTTC-CTGGCTACAATTAATTAACTTATTTCTACATTCAAACATTSizeHit CountTotal NormTotal
No Reads
droEug1
ACA-CA-TACAAACA--TACAA-AC-----------------------------------------------------------ATATACATGGGCCATATA--ATGT----G---------------------GTACATTA-------ATCGATAATTG-CATTTT-------T---------------TCGTTTCTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTGG----------TTGT--------------------------------------------------------------------------------------------------------------------------TGTTGTTGTTTTTTCTTTTTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG---------------------------------------------------------------------------------------------------TTGCAGTTGTTGCTGTTGCCGTTTTGCCCATTTCTTTTGCCACTTTTCATGCGTTGTCTC---------------------------------------------------------------------------------------------------------TCTCATGGCGCATGCCATTTGCA-----------------------------------------------------TTTSizeHit CountTotal NormTotal
No Reads
dm3
ACG-TTGT--TTTTGTATCTTTTTTAATTATAACTACACGTTTGTTTTATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAACAG---TTTTTCACTAG---------------------------------ATTTTTTTTAT-----TTCTA------TTA-----T--TAGTT--------TTGTTATTTGTTGTTCATATTGATTTAAACCTATATTAATATTTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-TGTC-----------TT------------------------------------------------------------------------------------------------GCGTTTTTAAGTTTTTTGTTTGTAACACC------------TTTCATCTACACAATCAACACATCTTCATG-TCCTGTTTCCGGCT-----------------------------------------------------GTAGTCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-TGTC-----------TT------------------------------------------------------------------------------------------------GCGTTTTTA........................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGTTTCCGGCT-----------------------------------------------------GTAGTC2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
ACG-TTGT--TTTTGTATCTTTCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-TGTC-----------TT------------------------------------------------------------------------------------------------GCGTTTTTAAGTTT...................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-TGTC-----------TT------------------------------------------------------------------------------------------------GCGTTTTTAAGT.....................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-----------TT------------------------------------------------------------------------------------------------GCGTTTTTAAGTTTTTTGTTTG...........................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTA-----T--TAGTT--------TTGTTATTTGTTGTTCATA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-----------TT------------------------------------------------------------------------------------------------GCGTTTTTAAGTTTTTTGTTTGT..........................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATCTTCATG-TCCTGTTTCCGGCT-----------------------------------------------------......2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACACC------------TTTCATCTACAC............................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAG---TTTTTCACTAG---------------------------------ATTTTTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................TATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAACAG---TTTTTCACTAG---------------------------------AT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TAGTT--------TTGTTATTTGTTGTTCATA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGATTTAAACCTATA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-TGTC-----------TT------------------------------------------------------------------------------------------------GCGTTTTTAAT......................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAATATTTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-TGTC-----------TT------------------------------------------------------------------------------------------------GCGG.............................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
droSim2
TTT-TATT--TATTTTGCCCGTGGCTTGTGTGTGTGCCTT-------------------------------------------------------------G---TAT----T---------------------TTTTTTTCTTCTATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTTCTTTT--------------------------------------------TTTTTTTT----TTGCTCTATCGT----------------------------------------TAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGT---------------------------------------------------------------------------------------------------------TTTCATTTCGCCTGCTGCGGTTTCAGTTGTCAT--TTTACTACAGCCGCTGTTAG--------------T-TAGTTATTTGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAT--TTTACTACAGCCGCTGTTA...........................2411.00100010000000000000
droSec2
TAT-TTGC--ACGTCTTCTGAT--T--------------------------------------------------------------------------------------------------------------------------------------------TG-------T---------------T--GAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGTTTTTC------AATTTTT----GG---------------------------------ATTTCTTTTTT-CCATTATTA------TTT-----TGA-GATT--------TTGTTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGTG---------------------------------------TGTGCGTTTGCCTTAATAAATTCGT--TT-CGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CAG-GCAG--ACCAATACACGG-GC---------------------------------------------------ACACACAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCACACTGACTC-------------ACTCTCTCC-----------------------------------AACATCTTCTAT-------------------------AAA-----------------------------------------------------------------------------------------------------------------------------------AAAGTAT---------------------------------------------------------------------------TTTTTGTACTCGCTTGACATTTTGTGGAT-ACGTCGGACGTCGGACGTCGTCG--GAAGTCGTCGCGAACTTTG-------CTTCTTTTTGCTCTTTCTCTTTTCTTTAGTCT---------------------------------------------------------------------------------------GT-CTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTCCACTTTTTACTTTTTGCCCATAT--CTCCTTG-CGCGTTTTTT-------------------------TAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCTCTTTTCTTTAGTCT---------------------------------------------------------------------------------------GT-............................................................................................................................................................................................................................................................2211.00101000000000
droEre2
ACT-TACA-CACACA--CACGTC-------------------------------------------------------------ACTCTCACGCAACGTACA---TAT----G---------------------TTTTCTCTTTTCGCTT-------TCG-T--ACT-------T---------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCACTTGCTTT----TAGTCTTATTAT----------------------------------------TACTA------TTA-----T--TTGTT--------TCC-------------------------------------------C------------------------------------------TAGTTA---------------------------------------------------------------------------------------------------TT----------------------------------------------TATGCGTTTCGCCTTGTAGTT-TTTTTC-------------------------------------------------------TTTTTTTATTTCGTTTTGATTGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTA---------------------------------------------------------------------------------------------------TT----------------------------------------------TATGCGTTTCGCCT..................................................................................................................................................................................................................................................................................2111.0010000010

Generated: 05/17/2015 at 11:24 PM