dmo_91

ATCTCAGCTAGGAAGTGAGTGCAACGCCGTGGATAGGCGTATGAAGCAAGAGGCCCTTTTTGATTGCTATGTGATTCGTCGTATTGGCCATAGATAACAGTCTGAAAGGGCCTTCGGGTTCATATACGGTGCCATCTCTGCCGCTCACAATCGGCAATATCGATTT *********************************...(((((((....(((((((((((.(((((.(((.((....(((.....)))..)).))).))))).)))))))))))....)))))))...************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V110 male body	M046 female body	V056 head	M060 embryo	V049 head	V041 embryo
.............................................................................................ATAACAGTCTGAAAGGGCCTTT...................................................	22	1	1	70.00	70	69	1	0	0	0	0
.............................................................................................ATAACAGTCTGAAAGGGCCTTTT..................................................	23	2	1	36.00	36	33	2	1	0	0	0
..................................................AGGCCCTTTTTGATTGCTATGT..............................................................................................	22	0	1	34.00	34	28	1	5	0	0	0
..................................................AGGCCCTTTTTGATTGCTATGTC.............................................................................................	23	1	1	21.00	21	19	2	0	0	0	0
.............................................................................................ATAACAGTCTGAAAGGGCCTTTTC.................................................	24	3	1	12.00	12	12	0	0	0	0	0
.............................................................................................ATAACAGTCTGAAAGGGCCT.....................................................	20	0	1	11.00	11	9	1	0	1	0	0
.............................................................................................ATAACAGTCTGAAAGGGCCTT....................................................	21	0	1	5.00	5	3	2	0	0	0	0
.............................................................................................ATAACAGTCTGAAAGGGCCTTTTT.................................................	24	3	1	4.00	4	4	0	0	0	0	0
.............................................................................................ATAACAGTCTGAAAGGGCCTTTCT.................................................	24	3	1	4.00	4	4	0	0	0	0	0
..................................................AGGCCCTTTTTGATTGCTATG...............................................................................................	21	0	1	3.00	3	1	2	0	0	0	0
.................................................GAGGCCCTTTTTGATTGCTAT................................................................................................	21	0	1	3.00	3	2	0	0	1	0	0
.................................................GAGGCCCTTTTTGATTGCT..................................................................................................	19	0	1	2.00	2	1	0	0	0	1	0
.............................................................................................ATAACAGTCTGAAAGGGCCTTTC..................................................	23	2	1	2.00	2	2	0	0	0	0	0
.................................................GAGGCCCTTTTTGATTGCTA.................................................................................................	20	0	1	2.00	2	2	0	0	0	0	0
............................GTGGATAGGCGTATGAAGCAAG....................................................................................................................	22	0	1	2.00	2	2	0	0	0	0	0
...................................................GGCCCTTTTTGATTGCTATGT..............................................................................................	21	0	1	2.00	2	0	2	0	0	0	0
...............................................................................................AACAGTCTGAAAGGGCCTTTTT.................................................	22	3	3	1.33	4	1	2	0	0	0	1
..................................................AGGCCCTTTTTGATTGCTATGTCT............................................................................................	24	2	1	1.00	1	1	0	0	0	0	0
.............................................................................................ATAACAGTCTGAAAGGGCCTTTCC.................................................	24	3	1	1.00	1	1	0	0	0	0	0
.............................................................................................ATAACAGTCTGAAGGGGCCT.....................................................	20	1	1	1.00	1	1	0	0	0	0	0
..................................................AGGCCCTTTTTGATTGCTATGTCA............................................................................................	24	1	1	1.00	1	1	0	0	0	0	0
.................................................GAGGCCCTTTTTGATTGCTATGTC.............................................................................................	24	1	1	1.00	1	1	0	0	0	0	0
..................................................AGGCCCGTTTTGATTGCGATGT..............................................................................................	22	2	1	1.00	1	0	0	1	0	0	0
...............................GATAGGCGTATGAAGCAAG....................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0
..................................................AGGCCCTTTTTGATTGCTATGTGAT...........................................................................................	25	0	1	1.00	1	0	1	0	0	0	0
.................................................GATGCCCTTTTTGATTGCTAT................................................................................................	21	1	1	1.00	1	0	1	0	0	0	0
.................................................GAGGCCCTTTTTGATTGCC..................................................................................................	19	1	1	1.00	1	0	0	0	1	0	0
.....................................................................TGTGATTTGTCGTATTGGCCATAGATA......................................................................	27	1	1	1.00	1	1	0	0	0	0	0
...............................................................................................AACAGTCTGAAAGGGCCTTTCC.................................................	22	3	1	1.00	1	1	0	0	0	0	0
.................................................GAGGCCCTTTTTGATTGCTCC................................................................................................	21	2	1	1.00	1	0	0	0	0	1	0
.............................................................................................AGAACAGTCTGAAAGGGCCTTTC..................................................	23	3	1	1.00	1	0	0	0	1	0	0
..........................CCGTGGATAGGCGTATGAAGCAAG....................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0
.............................................................................................ATAACAGTCTGAAAGGGCCTTTTA.................................................	24	3	1	1.00	1	1	0	0	0	0	0
.............................................................................................ATAACAGTCTGAAGGGGCCTTT...................................................	22	2	1	1.00	1	1	0	0	0	0	0
.............................................................................................ATAACAGTCTGAAAGGGTCTTT...................................................	22	2	1	1.00	1	1	0	0	0	0	0
.............................................................................................ATAACAGTCTGAAAGGGC.......................................................	18	0	1	1.00	1	1	0	0	0	0	0
..................................................AGGCCCTTTTTGATTGCTATGTCC............................................................................................	24	2	1	1.00	1	1	0	0	0	0	0
.............................................................................................ATAACAGTCTGAAAGCGCCTTT...................................................	22	2	1	1.00	1	1	0	0	0	0	0
..............................................................................................TAACAGTCTGAAAGGGCCTTTT..................................................	22	2	1	1.00	1	1	0	0	0	0	0
...............................................................................................AACAGTCTGAATGGGCCTTTT..................................................	21	3	2	0.50	1	0	1	0	0	0	0
...............................................................................................AACAGTCTGAAAGGGCCTTTTA.................................................	22	3	2	0.50	1	1	0	0	0	0	0
.............................................................................................ATAACAGTCTGAAAGGGCCTTTCA.................................................	24	3	2	0.50	1	1	0	0	0	0	0
...................................................AGGCCCTTTTGATTGCTATGT..............................................................................................	21	3	4	0.25	1	1	0	0	0	0	0
........................................ATGAATCAACAGGCTCTTTT..........................................................................................................	20	3	8	0.13	1	0	1	0	0	0	0

TAGAGTCGATCCTTCACTCACGTTGCGGCACCTATCCGCATACTTCGTTCTCCGGGAAAAACTAACGATACACTAAGCAGCATAACCGGTATCTATTGTCAGACTTTCCCGGAAGCCCAAGTATATGCCACGGTAGAGACGGCGAGTGTTAGCCGTTATAGCTAAA ************************************...(((((((....(((((((((((.(((((.(((.((....(((.....)))..)).))).))))).)))))))))))....)))))))...*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M060 embryo	M046 female body	V056 head	V049 head	V110 male body
...........................................................................................TCTATTGTCAGACTTTCCCGGA.....................................................	22	0	1	3.00	3	1	2	0	0	0
................................................TCTCCGGGAAAAACTAACGATA................................................................................................	22	0	1	2.00	2	2	0	0	0	0
..................................................TCCGGGAAAAACTAACGATA................................................................................................	20	0	1	1.00	1	0	0	1	0	0
...............................................TTCTCCGGGAAAAACTAACGAT.................................................................................................	22	0	1	1.00	1	0	1	0	0	0
...............................................TTCTCCGGGAAAAACTGACGA..................................................................................................	21	1	1	1.00	1	0	1	0	0	0
................................................TCTCCGGGAAAAACTAACGAGA................................................................................................	22	1	1	1.00	1	1	0	0	0	0
................................................................................CGTAGCCGGTATCTACTGTC..................................................................	20	3	5	0.20	1	1	0	0	0	0
........................................................................................GTATCTATTGTCTGACATTAC.........................................................	21	3	9	0.11	1	0	0	0	1	0
..............................................................................................................................................TGAGTGTTGGCCGTAATA......	18	3	20	0.10	2	0	0	0	0	2

Species	Coordinate	ID	Type	Alignment
droMoj3	scaffold_6328:2897750-2897915 -	dmo_91	confident	ATCTCAGCTAGGAAGT---GAGTGCAACGCCGTGGATAGGCGTATGAAGCAAGAGGCCCTTTTTGATTGCTATGTGATTCGTCGTATTGGCCATAGATAACAGTCTGAAAGGGCCTTCGGGTTCATAT------ACGGTGCCATCTCTGCCGCTCACAATCGGCAATATCGAT---TT
droVir3	scaffold_13042:903140-903308 -	dvi_187	confident	ACCTAAACTTAAAAATTTAGAGTGCCACGT--------GGCATATGAAGCGAAAGGCCCTTTTCGACTGCTATGTGCATTTTTTGACTAGTCATAGATAACAGTCTGAAAGGGCCTTTTGGCTCAGATGCAAACACAGCGATAACGATAACGATAACGAT-AACAATAACGATAACTT
droGri2	scaffold_15081:2041269-2041363 -	dgr_24	candidate-rescued	A--------------------------------------------------AAGGGCCTTTTTTAGCTGCTATGTGAATTTTTCGACTAATCA----TAACAGT-TAAGAGGGCCTATCCTCTCAAATG---ACGCA----------------------CGGGCAACAGCATT---CG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

ATCTCAGCTAGGAAGT---GAGTGCAACGCCGTGGATAGGCGTATGAAGCAAGAGGCCCTTTTTGATTGCTATGTGATTCGTCGTATTGGCCATAGATAACAGTCTGAAAGGGCCTTCGGGTTCATAT------ACGGTGCCATCTCTGCCGCTCACAATCGGCAATATCGAT---TT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
................................................................................................ATAACAGTCTGAAAGGGCCTTT............................................................	22	1	70.00	70	1	0	0	0	0	69
................................................................................................ATAACAGTCTGAAAGGGCCTTTT...........................................................	23	1	36.00	36	2	0	0	1	0	33
.....................................................AGGCCCTTTTTGATTGCTATGT.......................................................................................................	22	1	34.00	34	1	0	0	5	0	28
.....................................................AGGCCCTTTTTGATTGCTATGTC......................................................................................................	23	1	21.00	21	2	0	0	0	0	19
................................................................................................ATAACAGTCTGAAAGGGCCTTTTC..........................................................	24	1	12.00	12	0	0	0	0	0	12
................................................................................................ATAACAGTCTGAAAGGGCCT..............................................................	20	1	11.00	11	1	0	0	0	1	9
................................................................................................ATAACAGTCTGAAAGGGCCTT.............................................................	21	1	5.00	5	2	0	0	0	0	3
................................................................................................ATAACAGTCTGAAAGGGCCTTTTT..........................................................	24	1	4.00	4	0	0	0	0	0	4
................................................................................................ATAACAGTCTGAAAGGGCCTTTCT..........................................................	24	1	4.00	4	0	0	0	0	0	4
.....................................................AGGCCCTTTTTGATTGCTATG........................................................................................................	21	1	3.00	3	2	0	0	0	0	1
....................................................GAGGCCCTTTTTGATTGCTAT.........................................................................................................	21	1	3.00	3	0	0	0	0	1	2
....................................................GAGGCCCTTTTTGATTGCT...........................................................................................................	19	1	2.00	2	0	0	1	0	0	1
................................................................................................ATAACAGTCTGAAAGGGCCTTTC...........................................................	23	1	2.00	2	0	0	0	0	0	2
....................................................GAGGCCCTTTTTGATTGCTA..........................................................................................................	20	1	2.00	2	0	0	0	0	0	2
...............................GTGGATAGGCGTATGAAGCAAG.............................................................................................................................	22	1	2.00	2	0	0	0	0	0	2
......................................................GGCCCTTTTTGATTGCTATGT.......................................................................................................	21	1	2.00	2	2	0	0	0	0	0
..................................................................................................AACAGTCTGAAAGGGCCTTTTT..........................................................	22	3	1.33	4	2	1	0	0	0	1
.....................................................AGGCCCTTTTTGATTGCTATGTCT.....................................................................................................	24	1	1.00	1	0	0	0	0	0	1
................................................................................................ATAACAGTCTGAAAGGGCCTTTCC..........................................................	24	1	1.00	1	0	0	0	0	0	1
....................................................GAGGCCCTTTTTGATTGCTATGTC......................................................................................................	24	1	1.00	1	0	0	0	0	0	1
..................................GATAGGCGTATGAAGCAAG.............................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
.....................................................AGGCCCTTTTTGATTGCTATGTGAT....................................................................................................	25	1	1.00	1	1	0	0	0	0	0
....................................................GAGGCCCTTTTTGATTGCC...........................................................................................................	19	1	1.00	1	0	0	0	0	1	0
..................................................................................................AACAGTCTGAAAGGGCCTTTCC..........................................................	22	1	1.00	1	0	0	0	0	0	1
....................................................GAGGCCCTTTTTGATTGCTCC.........................................................................................................	21	1	1.00	1	0	0	1	0	0	0
.............................CCGTGGATAGGCGTATGAAGCAAG.............................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
................................................................................................ATAACAGTCTGAAAGGGCCTTTTA..........................................................	24	1	1.00	1	0	0	0	0	0	1
................................................................................................ATAACAGTCTGAAAGGGC................................................................	18	1	1.00	1	0	0	0	0	0	1
.....................................................AGGCCCTTTTTGATTGCTATGTCC.....................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.................................................................................................TAACAGTCTGAAAGGGCCTTTT...........................................................	22	1	1.00	1	0	0	0	0	0	1
..................................................................................................AACAGTCTGAAAGGGCCTTTTA..........................................................	22	2	0.50	1	0	0	0	0	0	1
................................................................................................ATAACAGTCTGAAAGGGCCTTTCA..........................................................	24	2	0.50	1	0	0	0	0	0	1

droVir3

ACCTAAACTTAAAAATTTAGAGTGCCACGT--------GGCATATGAAGCGAAAGGCCCTTTTCGACTGCTATGTGCATTTTTTGACTAGTCATAGATAACAGTCTGAAAGGGCCTTTTGGCTCAGATGCAAACACAGCGATAACGATAACGATAACGAT-AACAATAACGATAACTT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
..................................................................................................AACAGTCTGAAAGGGCCTTTTCC.........................................................	23	1	12016.00	12016	4	0	8	0	5	1447	6	1	5	365	0	0	0	0	1	0	0	0	1	0	1623	5	0	2	1	0	1	1	1166	1157	566	2355	0	1612	0	0	0	0	8	1588	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	88	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................AAGGCCCTTTTCGACTGCTATGT.......................................................................................................	23	1	11457.00	11457	14	0	10	3	1	131	4	266	3	357	0	0	0	0	3	0	1	0	1	1	429	6	0	0	4	1	5	0	3235	2323	735	3387	2	245	0	0	0	0	0	236	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	34	0	1	1	1	1	1	5	2	1	2	0	0	0	2	0	0	1
....................................................AAGGCCCTTTTCGACTGCTAT.........................................................................................................	21	1	8123.00	8123	12	0	9	1	1	138	3	31	0	23	1	0	0	0	3	0	0	0	2	0	248	3	0	0	2	1	5	2	2118	1509	670	2834	0	203	2	1	2	0	1	264	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	21	0	2	2	1	0	1	2	0	0	0	0	3	0	0	0	0	0
..................................................................................................AACAGTCTGAAAGGGCCTTTTC..........................................................	22	1	6414.00	6414	1	0	1	0	5	577	7	0	0	156	0	0	0	0	1	0	0	0	1	0	449	3	1	3	0	0	2	2	1164	972	330	1451	0	540	0	0	0	0	3	723	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................AAGGCCCTTTTCGACTGCTATG........................................................................................................	22	1	6192.00	6192	22	0	15	0	1	76	1	59	1	47	0	0	0	0	1	0	0	0	0	2	211	0	0	2	3	2	3	3	1830	1299	423	1876	1	122	0	0	1	0	1	143	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17	0	0	2	6	7	0	1	6	0	0	0	3	1	0	2	2	0
.................................................................................................TAACAGTCTGAAAGGGCCTTTTC..........................................................	23	1	5649.00	5649	2	1	1	0	1	329	2	0	2	142	0	0	0	0	0	0	0	0	0	0	482	2	0	1	0	0	0	1	1211	1010	300	1235	0	370	1	0	0	0	2	524	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TAACAGTCTGAAAGGGCCTTTTCC.........................................................	24	1	5585.00	5585	5	0	3	0	3	319	2	0	1	203	3	0	0	0	1	0	0	0	0	0	654	0	0	1	0	0	0	1	867	725	331	1329	0	469	0	0	0	0	1	550	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	116	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.................................................................................................TAACAGTCTGAAAGGGCCTTTT...........................................................	22	1	4717.00	4717	0	0	3	0	1	195	1	130	1	105	0	0	1	0	3	2	1	0	0	1	208	0	0	0	0	0	0	0	1337	904	242	1046	1	176	0	1	0	0	1	347	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................AGGCCCTTTTCGACTGCTATGT.......................................................................................................	22	1	4034.00	4034	2	0	2	0	0	52	2	76	0	104	0	0	0	0	0	0	0	0	0	0	129	1	0	1	2	0	1	2	1194	790	284	1208	0	81	0	0	0	0	0	89	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	1	1	0	0	3	0	0	3	0	0	0	0	0	0
................................................................................................ATAACAGTCTGAAAGGGCCTTTT...........................................................	23	1	3743.00	3743	0	0	0	1	0	123	3	81	0	60	0	0	0	0	2	0	0	0	0	0	203	2	1	3	1	2	2	2	1095	787	181	799	0	149	0	1	1	0	4	223	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	4	0	0	0	0	2	2	0	0	1	0	0	0	0	0	0
................................................................................................ATAACAGTCTGAAAGGGCCTTTTCC.........................................................	25	1	3693.00	3693	0	0	2	0	1	208	0	0	0	110	0	0	0	0	0	0	0	0	0	0	405	1	0	2	0	1	0	0	535	470	192	874	0	407	0	0	0	0	0	425	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................ATAACAGTCTGAAAGGGCCTTT............................................................	22	1	3676.00	3676	0	0	1	0	4	161	3	125	1	73	0	0	0	0	1	1	0	0	1	0	230	1	1	1	2	1	2	4	846	702	135	741	0	249	0	0	0	0	4	373	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................ATAACAGTCTGAAAGGGCCTTTTC..........................................................	24	1	3261.00	3261	1	0	0	0	2	138	0	0	2	68	0	0	0	0	0	0	0	0	1	0	304	1	0	1	0	0	0	1	749	576	129	678	0	261	0	0	0	0	3	329	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................AACAGTCTGAAAGGGCCTTTT...........................................................	21	1	2667.00	2667	0	0	1	0	1	149	0	82	0	50	0	0	0	0	0	0	0	0	0	0	93	0	0	0	0	0	0	2	738	554	116	591	1	112	0	0	0	0	2	173	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TAACAGTCTGAAAGGGCCTTT............................................................	21	1	1583.00	1583	0	0	0	0	1	59	2	55	0	44	0	0	0	0	1	0	0	1	1	0	64	1	0	0	0	0	0	0	241	234	81	277	1	177	0	0	0	0	0	336	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................AAGGCCCTTTTCGACTGCTATGTC......................................................................................................	24	1	1412.00	1412	4	0	2	0	0	26	0	1	0	43	0	0	0	0	0	0	0	0	0	0	91	0	0	0	0	0	0	0	344	228	93	463	0	45	1	0	0	0	0	60	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................AAGGCCCTTTTCGACTGCTA..........................................................................................................	20	1	1384.00	1384	11	0	3	3	2	40	0	16	0	14	0	0	0	0	0	0	0	0	0	0	76	0	0	1	0	1	1	0	312	225	102	425	0	72	0	0	0	0	1	69	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	4	0	0	0	0	0	0	0	1	1	1	0	1	0	0	0	0	0
..................................................................................................AACAGTCTGAAAGGGCCTTTTTC.........................................................	23	1	990.00	990	0	0	0	0	0	57	0	0	0	28	0	0	0	0	0	0	0	0	0	0	50	0	0	0	0	0	0	0	293	240	35	191	0	48	0	0	0	0	0	48	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................AAGGCCCTTTTCGACTGCT...........................................................................................................	19	1	829.00	829	43	1	1	0	0	56	0	37	0	16	0	0	0	0	1	0	0	0	1	0	70	1	0	0	0	0	0	0	121	96	38	212	0	72	0	0	0	0	2	44	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	2	0	0	3	4	3	0	0	1	0	0	0	0	0
....................................................AAGGCCCTTTTCGACTGCTATC........................................................................................................	22	1	719.00	719	9	0	2	0	1	24	0	0	0	5	0	0	0	0	0	0	0	0	1	0	52	1	0	0	0	0	0	0	137	108	53	228	0	36	0	0	0	0	1	54	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	1	2	0	0	0	0	0	0	0
................................................................................................ATAACAGTCTGAAAGGGCCTTTC...........................................................	23	1	555.00	555	0	0	0	0	1	22	0	0	0	11	0	0	0	0	0	0	0	0	1	0	60	0	0	0	0	0	0	0	93	67	34	115	0	56	0	0	0	0	0	88	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TAACAGTCTGAAAGGGCCTTTC...........................................................	22	1	553.00	553	0	0	1	0	0	47	0	0	0	11	0	0	0	0	0	0	0	0	0	0	71	0	0	0	0	0	0	0	77	72	23	108	0	53	0	0	0	0	0	85	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................AGGCCCTTTTCGACTGCTATG........................................................................................................	21	1	533.00	533	1	0	5	0	0	6	0	10	0	5	0	0	0	0	0	0	0	0	0	0	22	0	0	0	1	1	1	0	135	128	40	150	0	7	0	0	0	0	1	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1
..................................................................................................AACAGTCTGAAAGGGCCTTTTT..........................................................	22	1	515.00	515	0	0	0	0	0	9	2	96	0	12	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	1	0	167	113	15	66	0	9	0	0	0	1	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................AAGGCCCTTTTCGACTGCTATCC.......................................................................................................	23	1	435.00	435	4	0	0	0	0	10	0	0	0	1	0	0	0	0	0	0	0	0	0	0	42	0	0	0	0	0	0	0	41	32	49	197	0	26	0	0	0	0	0	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
................................................................................................ATAACAGTCTGAAAGGGCCTTTCC..........................................................	24	1	432.00	432	2	0	0	0	0	28	0	1	0	13	0	0	0	0	0	0	0	0	0	0	61	0	0	0	0	0	0	1	29	39	25	91	0	69	0	0	0	0	0	63	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................AACAGTCTGAAAGGGCCTTTCC..........................................................	22	1	408.00	408	0	0	0	0	0	57	0	0	0	14	0	0	0	0	0	0	0	0	0	0	69	0	0	0	0	0	0	0	25	26	15	60	0	76	0	0	0	0	0	60	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TAACAGTCTGAAAGGGCCTTTCC..........................................................	23	1	399.00	399	2	0	2	0	0	31	0	0	0	12	0	0	0	0	0	0	0	0	0	0	65	0	0	1	0	0	0	0	38	27	19	78	0	58	0	0	0	0	0	52	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................AACAGTCTGAAAGGGCCTTTTCT.........................................................	23	1	396.00	396	0	0	0	0	0	42	0	0	0	31	0	0	0	0	0	0	0	0	0	0	46	0	0	1	0	0	0	0	59	54	17	53	0	45	0	0	0	0	1	47	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................AGGCCCTTTTCGACTGCTATGTC......................................................................................................	23	1	379.00	379	0	0	1	0	1	9	0	0	0	7	0	0	0	0	1	0	0	0	0	0	26	0	0	0	0	0	0	0	82	60	38	121	0	21	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................AACAGTCTGAAAGGGCCTTT............................................................	20	1	360.00	360	0	0	0	0	1	19	0	18	0	10	0	0	0	0	1	0	0	0	0	0	15	0	0	0	0	0	0	0	58	71	19	68	0	32	0	0	0	0	1	46	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................AACAGTCTGAAAGGGCCTTTC...........................................................	21	1	304.00	304	0	0	0	0	0	32	0	0	0	10	0	0	0	0	0	0	0	0	0	0	22	0	0	0	0	0	0	0	43	45	9	67	0	33	0	0	0	0	0	42	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................ATAACAGTCTGAAAGGGCCTT.............................................................	21	1	284.00	284	0	0	0	0	0	13	0	11	0	5	0	0	0	0	0	0	0	0	0	0	13	1	0	0	0	0	0	0	64	47	9	59	0	28	0	0	0	0	0	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................AACAGTCTGAAAGGGCCTTTTCCT........................................................	24	1	190.00	190	0	0	0	0	0	12	0	0	0	7	0	0	0	0	0	0	0	0	0	0	33	0	0	0	0	0	0	0	23	23	8	34	0	28	0	0	0	0	0	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................ATAACAGTCTGAAAGGGCCT..............................................................	20	1	186.00	186	2	0	0	0	0	6	0	7	0	12	0	0	0	0	0	0	0	0	0	0	18	0	0	2	0	0	0	0	18	14	4	14	0	32	0	0	0	0	0	51	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0
.................................................................................................TAACAGTCTGAAAGGGCCTTTTCT.........................................................	24	1	159.00	159	0	0	0	0	0	12	0	0	0	17	0	0	0	0	0	0	0	0	0	0	21	0	0	0	0	0	0	0	37	19	9	14	0	8	0	0	0	0	0	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................AACAGTCTGAAAGGGCCTTTTCA.........................................................	23	1	146.00	146	0	0	0	0	1	3	0	0	0	7	0	0	0	0	0	0	0	0	0	0	15	0	0	0	0	0	0	1	16	20	7	38	0	17	0	0	0	0	0	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TAACAGTCTGAAAGGGCCTTTTTC.........................................................	24	1	121.00	121	0	0	0	0	0	4	0	0	0	2	0	0	0	0	0	0	0	0	0	0	16	0	0	0	0	0	0	0	35	30	5	14	0	4	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................ATAACAGTCTGAAAGGGCCTTTCCC.........................................................	25	1	107.00	107	2	0	0	0	0	8	0	0	0	1	0	0	0	0	0	0	0	0	0	0	22	0	0	0	0	0	0	0	9	5	3	28	0	11	0	0	0	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................ACAGTCTGAAAGGGCCTTTTCC.........................................................	22	1	103.00	103	0	0	0	0	0	19	0	0	0	2	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0	0	3	15	6	18	0	17	0	0	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TAACAGTCTGAAAGGGCCTTTTT..........................................................	23	1	99.00	99	0	0	0	0	0	1	0	10	0	4	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	31	16	4	17	0	3	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................ATAACAGTCTGAAAGGGCCTTTTCT.........................................................	25	1	98.00	98	0	0	0	0	0	3	0	0	0	10	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	25	14	2	12	0	11	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................ATAACAGTCTGAAAGGGCCTTTTTC.........................................................	25	1	96.00	96	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	36	23	3	13	0	2	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................AAGGCCCTTTTCGACTGCTATTC.......................................................................................................	23	1	96.00	96	2	0	1	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	33	8	8	31	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................AACAGTCTGAAAGGGCCTTTCCC.........................................................	23	1	96.00	96	1	0	0	0	0	11	0	0	0	1	0	0	0	0	0	0	0	0	0	0	24	0	0	0	0	0	0	0	6	4	0	19	0	15	0	0	0	0	1	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................AAGGCCCTTTTCGACTGCTC..........................................................................................................	20	1	90.00	90	2	0	1	0	0	13	0	1	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	10	15	5	17	0	11	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................CCTTTTCGACTGCTATGT.......................................................................................................	18	1	89.00	89	0	0	0	0	0	1	0	14	1	24	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	5	11	3	3	0	12	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TAACAGTCTGAAAGGGCCTTTTCA.........................................................	24	1	81.00	81	0	0	0	0	0	4	0	0	0	5	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	18	9	2	17	0	10	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................AACAGTCTGAAAGGGCCTTTCT..........................................................	22	1	81.00	81	0	0	0	0	0	9	0	0	0	7	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	16	9	1	13	0	2	0	0	0	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................AAGGCCCTTTTCGACTGCTATGTCT.....................................................................................................	25	1	80.00	80	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	16	16	3	36	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TAACAGTCTGAAAGGGCCTTTCCC.........................................................	24	1	69.00	69	1	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	5	1	3	16	0	10	0	0	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................ATAACAGTCTGAAAGGGCCTTTTT..........................................................	24	1	67.00	67	0	0	0	0	0	2	0	4	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	1	28	14	4	6	0	1	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................ATAACAGTCTGAAAGGGCCTTC............................................................	22	1	60.00	60	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	7	3	5	16	0	5	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................AACAGTCTGAAAGGGCCTTTTA..........................................................	22	1	59.00	59	0	0	0	0	1	2	2	2	0	1	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	1	0	0	22	7	1	12	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TAACAGTCTGAAAGGGCCTT.............................................................	20	1	59.00	59	0	0	0	0	0	2	0	4	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	5	14	7	10	0	5	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................AGGCCCTTTTCGACTGCTAT.........................................................................................................	20	1	55.00	55	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	13	12	3	16	0	4	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................AAGGCCCTTTTCGACTGCTATT........................................................................................................	22	1	54.00	54	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	9	12	1	26	0	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................ATAACAGTCTGAAAGGGCCTTTTCA.........................................................	25	1	53.00	53	0	0	0	0	0	1	0	0	0	4	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	12	5	3	14	0	3	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................ATAACAGTCTGAAAGGGCCTTTTCCT........................................................	26	1	46.00	46	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	9	8	2	8	0	6	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TAACAGTCTGAAAGGGCCTTTTCCT........................................................	25	1	43.00	43	0	0	0	0	0	4	0	0	0	2	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	4	4	1	8	0	7	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................AACAGTCTGAAAGGGCCTTTTTCT........................................................	24	1	39.00	39	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	16	9	0	5	0	3	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................AAGGCCCTTTTCGACTGCTATGTT......................................................................................................	24	1	37.00	37	0	0	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	12	11	3	5	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................CCCTTTTCGACTGCTATGT.......................................................................................................	19	1	28.00	28	2	0	0	0	0	2	0	1	0	7	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	2	3	0	1	0	4	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................ACAGTCTGAAAGGGCCTTTTC..........................................................	21	1	27.00	27	0	0	0	0	0	5	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	3	1	1	9	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................AACAGTCTGAAAGGGCCTTTCTC.........................................................	23	1	26.00	26	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	4	3	1	4	0	3	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................AAGGCCCTTTTCGACTGCTATGC.......................................................................................................	23	1	24.00	24	1	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	2	0	12	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TAACAGTCTGAAAGGGCCTTTCT..........................................................	23	1	24.00	24	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	2	2	1	1	0	1	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................AACAGTCTGAAAGGGCCTTTTG..........................................................	22	1	23.00	23	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	7	2	0	9	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TAACAGTCTGAAAGGGCCTTTTCCA........................................................	25	1	23.00	23	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	1	5	1	2	0	2	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................ATAACAGTCTGAAAGGGCCTTTA...........................................................	23	1	20.00	20	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	3	3	0	5	0	1	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................AACAGTCTGAAAGGGCCTTTTCCA........................................................	24	1	20.00	20	0	0	0	0	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	1	1	2	2	0	3	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................ATAACAGTCTGAAAGGGCCTTTTA..........................................................	24	1	19.00	19	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	1	1	0	0	6	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................................................................................................ATAACAGTCTGAAAGGGC................................................................	18	1	19.00	19	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	1	0	0	1	0	1	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................AGGCCCTTTTCGACTGCTATGTT......................................................................................................	23	1	17.00	17	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	2	7	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................AAGGCCCTTTTCGACTGCTATA........................................................................................................	22	1	17.00	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	8	0	2	2	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.................................................................................................TAACAGTCTGAAAGGGCCT..............................................................	19	1	16.00	16	0	0	0	0	0	2	0	1	0	3	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	2	0	2	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................AACAGTCTGAAAGGGCCTT.............................................................	19	1	15.00	15	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	5	2	0	1	0	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................AACAGTCTGAAAGGGCCTTTTAC.........................................................	23	1	15.00	15	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................AGGCCCTTTTCGACTGCTATGTCT.....................................................................................................	24	1	15.00	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	3	1	8	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TAACAGTCTGAAAGGGCCTTTTA..........................................................	23	1	15.00	15	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	7	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................ATAACAGTCTGAAAGGGCCTTTCT..........................................................	24	1	15.00	15	0	0	0	0	0	1	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	1	1	0	1	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TAACAGTCTGAAAGGGCCTTC............................................................	21	1	15.00	15	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	4	0	5	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................ATAACAGTCTGAAAGGGCCTTTCA..........................................................	24	1	14.00	14	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	3	1	2	0	3	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................AGTCTGAAAGGGCCTTTTCC.........................................................	20	1	14.00	14	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	1	1	2	0	2	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................AAGGCCCTTTTCGACTGCTATGA.......................................................................................................	23	1	14.00	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	6	1	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CCACGT--------GGCATATGAAGCGA..............................................................................................................................	20	1	13.00	13	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	3	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................ATAACAGTCTGAAAGGGCCTTCC...........................................................	23	1	13.00	13	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	4	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................ACAGTCTGAAAGGGCCTTTTTC.........................................................	22	1	13.00	13	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	2	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................CACGT--------GGCATATGAAGCGA..............................................................................................................................	19	1	13.00	13	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	4	0	1	4	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TAACAGTCTGAAAGGGCCTTCC...........................................................	22	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	1	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................AACAGTCTGAAAGGGCCTTTTAA.........................................................	23	1	11.00	11	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	2	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................GCCCTTTTCGACTGCTATGT.......................................................................................................	20	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	1	4	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................AACAGTCTGAAAGGGCCTTTCA..........................................................	22	1	11.00	11	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	2	0	1	0	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................AAGGCCCTTTTCGACTGCTAC.........................................................................................................	21	1	11.00	11	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	1	1	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................AAGGCCCTTTTCGACTGCTATGTA......................................................................................................	24	1	10.00	10	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................AACAGTCTGAAAGGGCCTTTTTT.........................................................	23	1	10.00	10	0	0	0	0	0	0	0	5	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................AAGGCCCTTTTCGACTGCTATGTTT.....................................................................................................	25	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................AAGGCCCTTTTCGACTGCTATCCC......................................................................................................	24	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...................................................................................................ACAGTCTGAAAGGGCCTTTTCT.........................................................	22	1	10.00	10	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................AACAGTCTGAAAGGGCCTTTCCT.........................................................	23	1	9.00	9	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	5	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................AAGGCCCTTTTCGACTGC............................................................................................................	18	1	9.00	9	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
.................................................................................................TAACAGTCTGAAAGGGCCTTTA...........................................................	22	1	8.00	8	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................AACAGTCTGAAAGGGCCT..............................................................	18	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TAACAGTCTGAAAGGGCCTTTTG..........................................................	23	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................AACAGTCTGAAAGGGCCTTTTTCA........................................................	24	2	7.00	14	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	5	2	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................AACAGTCTGAAAGGGCCTTCC...........................................................	21	1	7.00	7	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................AGTCTGAAAGGGCCTTTTC..........................................................	19	1	7.00	7	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................CAGTCTGAAAGGGCCTTTTCC.........................................................	21	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................ATAACAGTCTGAAAGGGCCTTTTG..........................................................	24	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	3	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................ATAACAGTCTGAAAGGGCCTTTTAA.........................................................	25	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................AAGGCCCTTTTCGACTGCTATGTCA.....................................................................................................	25	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

A--------------------------------------------------AAGGGCCTTTTTTAGCTGCTATGTGAATTTTTCGACTAATCA----TAACAGT-TAAGAGGGCCTATCCTCTCAAATG---ACGCA----------------------CGGGCAACAGCATT---CG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
A--------------------------------------------------AAGGGCCTTTTTTAGCTGCTAT.........................................................................................................	23	1	3.00	3	0	3
.................................................................................................TAACAGT-TAAGAGGGCCTAT............................................................	20	1	3.00	3	0	3
.................................................................................................TAACAGT-TAAGAGGGCCTATC...........................................................	21	1	2.00	2	0	2
.................................................................................................TAACAGT-TAAGAGGGCCTATCC..........................................................	22	1	1.00	1	0	1
A--------------------------------------------------AAGGGCCTTTTTTAGCTGCTATG........................................................................................................	24	1	1.00	1	0	1

dmo_91

scaffold_6328:2897800-2897865 -

confident

Testes-restricted

intergenic

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-32.4	-32.3	-32.0