ID:

dmo_909

 Coordinate:

scaffold_6496:497865-498015 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-35.4 -35.1 -35.0 -34.7

Flybase annnotation

CDS [Dmoj\GI19738-cds]; exon [dmoj_GLEANR_4649:9]; intron [Dmoj\GI19738-in]

Repeatable elements

NameClassFamilyStrand
(CAGG)nSimple_repeatSimple_repeat+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCATTTTAATTAACTGCCTTTATTAACTGTGCATCCATTTACATGCCATGCCCGCCCGCCTGCCTGCCTGCCTGCCTGCCTCTTGTTGCGCCACTCCCCGCCCGCCCCCTCCATAAAAAACACGCGCTCGTATTAACACATTAGTCCGAGCCAATGCCTGAGCTCGAACCAGCGCCAGCGCCAGCGCCGGAGCCGGAGCAGGAGTTGACTGCCAGCAGCTGCCACGAGCTGCCGCTGCCGCCGCCGCCGTC
**************************************************.........(((.((.((.((...((.((((..((((((((........((...................((.(((((((.((((......)))).)))))....)).)).))........)))).))))..)).)).)).)).)))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V056
head
 V041
embryo
 V110
male body		 M060
embryo
.........................................................................................................................................................................CAGCGCCAGCGCCAGCGCCGG............................................................. 21 0 1 4.00 4 0 2 2 0 0
.........................................................................................................................................................................CAGCGCCAGCGCCAGCGACGGA............................................................ 22 1 3 1.33 4 0 2 1 0 1
.................................................................................................................................................................................................................................GAGCTGCCGCTGCCGCCGCCGC.... 22 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................................................TGAGCTCGAACCAGCGCCAGC........................................................................ 21 0 1 1.00 1 0 0 0 1 0
...................................................................................................................................................................TCGAACCAGCGCCAGCGCC..................................................................... 19 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................GCGCGTATTCACACATTAGT.......................................................................................................... 20 2 1 1.00 1 1 0 0 0 0
................................................................................................................................................................................................CCGGAGCAGGAGTTGACTGCCAGCA.................................. 25 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................................GCCGGAGCAGGAGTTGACTGCCAGCA.................................. 26 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................................GCGCCAGCGCCACCGCCGG............................................................. 19 1 3 0.33 1 1 0 0 0 0
.....................................................................................................................................................................................................................................TTCCGCTGCCGCCGCCGGCGTC 22 2 4 0.25 1 0 0 0 0 1
.....................................................................................................................................................................................................................................TGCCGCTGCCGCCGCCGGCGTC 22 1 4 0.25 1 0 0 0 0 1
...............................................................................................................................................................................CAGCGCCAGCGCCAGAGGCGG....................................................... 21 2 20 0.05 1 0 1 0 0 0
.........................................................................................................................................................................CAGCGCCAGCGCCAGAGGCGG............................................................. 21 2 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

CGTAAAATTAATTGACGGAAATAATTGACACGTAGGTAAATGTACGGTACGGGCGGGCGGACGGACGGACGGACGGACGGAGAACAACGCGGTGAGGGGCGGGCGGGGGAGGTATTTTTTGTGCGCGAGCATAATTGTGTAATCAGGCTCGGTTACGGACTCGAGCTTGGTCGCGGTCGCGGTCGCGGCCTCGGCCTCGTCCTCAACTGACGGTCGTCGACGGTGCTCGACGGCGACGGCGGCGGCGGCAG
**************************************************.........(((.((.((.((...((.((((..((((((((........((...................((.(((((((.((((......)))).)))))....)).)).))........)))).))))..)).)).)).)).)))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body
.............................................................................................................................................................GACCCAAGCTTGGTCGCG............................................................................ 18 2 3 1.67 5 5 0 0
.....................................................................................................................................................................CTTGGTAGCGGTCGCGTTC................................................................... 19 2 2 0.50 1 1 0 0
..................................................................................................................................................................................................CCACGTCCTCCAGTGACGGT..................................... 20 3 5 0.20 1 0 1 0
................................................ACTGGAGGGCGGACGGATG........................................................................................................................................................................................ 19 3 20 0.05 1 0 0 1
......................................................................................................................................................................................................................................CGGCGACGGCGGCGGCGG... 18 0 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6496:497815-498065 - dmo_909 GCA---------------------------------------------TTTTAATTAACTGCCTT-T--ATTAACTGTGCATCCATTTACATGCC----------------------------------------------AT-----GCCCGCCC---GCCTGCCTGCCTGCCTGCCTGCCTCTTGTTGCGC--------------CACTCCCCGCC-CGCCC-------------CCTCCATAAAAAACA----CGCGCTCGTATTAACA-CATT-AGT----CCGAGCCAATGCCTGAGCTC-----GAACCAGCGCCA---------GCGCCAGCGCC----------------------GGAGCCGG---AGCAGGAGT--TGACTGC-----CAGCAGCTGCCAC----GAGCTGCCGCTGCCGCCGCCGCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTC
droVir3 scaffold_12823:1403229-1403444 + GCA---------------------------------------------TTTTAATTAACTGCCTT-T--ATTAACTGTGCATCAATTTACATGCCTCCCACCCGCT----AACCG--------CTGTTGCTCATGTGCGTGAC-----GTCCGCCC---GCCCGCCTGCCTGCCTGCCC--------------------------------------------C-------------GCCCATTA----ACA----CGCGCTCGTATTAACA-CATT-AGT----CCGAGCCAATGCCAG--------------------------------------AGCCTG---------------AC-----------------------------TGCAGCATCAGCAGCAGCAGC----GAGCTGCCCCTGCCGCCGCCACC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTC
droGri2 scaffold_15245:5843238-5843487 - GCA---------------------------------------------TTTTAATTAACTGCCTT-T--ATTAACTGTGCATCAATTTACATGCTTGTT-CCCGCT----ACCCGTTCTTGTGTTGTTGCTCACATGCCTGATGGACA--------CCCGTTTGCCCGTTTGCCTGC----------------------------------------T-----CGCTCGTTCGCCCTGCCTATTA----ACA----CGCGTACGTATTAACA-CATT-AGT----CCGAGCCAATGCCAA-----TGCAAG---CGCCA------------------GAGCCTG---------------AGAGCAGCAGCAA--------------------------CAGCAA----CAGCATTGAGCTGCCTCTGCCACCGCCACC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC
droWil2 scf2_1100000004902:10329293-10329421 - ACA---------------------------------------------ACACACACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACACCGACG-CACA-CATCTATCAGAGCAA------CATCAC--------------------------------AAACCAACCACCACCGTCACCATCACCACCACCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCACCATCAC----CCATCTCCAACACT--G---------------CCGTCG--------------------------CCGCCGCCGCCGCC
dp5 3:19522024-19522214 + GCA---------------------------------------------TTCTCATTAACTGCCTT-T--ATTAACCCGAGTTCTGTTTCCGTGTATCCCGCCGAATCCTGAATC------------------------------------------CATGCCT----GCCTG------------------------C--------------------------T-------------GCCCATTA----ACATGCCTGTGCTCGCATTAACA-CATT-AGC----CCGAACCCGAGCCAGAGCCT--------------------------------GAGCCAGAGGTCGT----------A-----------------------------------------GAAGCCGGTGGCGAGCTGCCACTGCCGCCACCGCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTC
droPer2 scaffold_37:524167-524357 + GCA---------------------------------------------TTCTCATTAACTGCCTT-T--ATTAACCTGAGTTCTGTTTCCGTGTATCCCGCCGAATCCTGAATC------------------------------------------CATGCCT----GCCTG------------------------C--------------------------T-------------GCCCATTA----ACATGCCTGTGCTCGCATTAACA-CATT-AGC----CCGAACCCGAGCCAGAGCCT--------------------------------GAGCCTGAGGTCGT----------A-----------------------------------------GAAGCCGGCGGCGAGCTGCCACTGCCGCCACCGCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTC
droAna3 scaffold_13117:2898288-2898519 + CCC---------------------------------------------TGGCCGCCAACCTG-TC-C--GCCAGCTC---------------------------------------------------------------------------------GGCCTGCTCCTCCTCCAAC-T------CGCTG------GTGAACAGCAGCACCTCCAGCCTCGGCT-------------CCCCGCAG----CAGCAC------------------------------------------CAG-----CACCAG---CAGCAACAGATTCAACTG-----C-----A---------------ACAGCAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCA---------GCAGCAGCGAGTGCAGCAGCAA--------------CAGCGCGAGAGCCTGGCCACTGCCATGGCGGCTGGGATGCGGCACCATCCGCTCCTGCCGCCACCGGA
droBip1 scf7180000394524:2893-2993 + GAG---------------------------------------------CTGGAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGG-----AGCTGG---CGGCGGCA---------GC----------G---------------GTGGCGGCGGCGGCGGAGGAGGCATTCGGATAGC-----CAGCAATCTGCAC----AAGCAGC--CCGGCGATCTGGGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAC
droKik1 scf7180000302682:1837842-1837974 - GCA---------------------------------------------TTTTAATTAACTGCCTT-TGTTTTAACCC--------------------------------------------------------------------------------CCCTTTGCCTGCCTGTCTGCCTGAC------------------------------------------------------------TTT----ACC----CGCGTCCGCATTAACCCCATTCAG----------------------CCT--------------------------------GAGCCCG---------------AGA-----------------------------------------CCAGTCAG----GAGCTCCCTTTGCCACCGCCGCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTC
droFic1 scf7180000453809:157806-157932 - GCA---------------------------------------------TTCTCATTAACTGCCTTTTGTATTAACCC--------------------------------------------------------------------------------CTTGTTG--------------------------CGCCTGC-------------TCCCCGCC-----TG-----------------------------CCTGTG-TCGCATTAACC-CATTTAG----------------------CCT--------------------------------GAGTCTG---------------AGA-----------------------------------------GCAGCCAG----GAGTTGCCCCTGCCGCCACCCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTC
droEle1 scf7180000491107:642696-642814 - GCA---------------------------------------------TTTTAATTAACTGCCTTTT--GTTAACCC--------------------------------------------------------------------------------CCGCCTGCCTGCATGCCTG----------------------------------------CC-----TG-----------------------------------CCCGCATTAACC-CATTTAG----------------------CCT--------------------------------GAGTCTG---------------AGA-----------------------------------------GCAGCCAG----GAGTTGCCTTTGCCACCGCCCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTC
droRho1 scf7180000779911:449198-449310 + GCA---------------------------------------------TTTTAATTAACTGCCTT-T--GTTAACCC--------------------------------------------------------------------------------TTGCCT----GCCTGCTCGCCT---------------------------------------------------------------------------------CCCGCATTAACC-CATTTAG----------------------CCT--------------------------------GAGTCTG---------------AGA-----------------------------------------GCAGCCAG----GAGTTGCCTCTGCCACCGCCCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTC
droBia1 scf7180000302292:3995562-3995715 + TTTTAGTTCATCAGCCGTAGGTTGTGTGCCACTTGCCTTGCTCGTGCATT-CAATTAACCGCCTTTT--GTTAACCC--------------------------------------------------------------------------------CCGCCCGCCCG-------------------------------------------------C-----TG-----------------------------------CCCGCATTAACC-CATTTAG----------------------CCT--------------------------------GAGTCTG---------------AGA-----------------------------------------GCAGCCAG----GAGCTGCCCCTGCCACCGCCCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTC
droTak1 scf7180000415241:17139-17257 + GCA---------------------------------------------TTTTAATTAACTGCCTTTT--GTTAACCC--------------------------------------------------------------------------------CCGCCTGCCTGCCTTCCCGC----------------------------------------C-----CG-----------------------------------CCCTTATTAACC-CATTTAG----------------------CCT--------------------------------GAGTCTG---------------AGA-----------------------------------------GCAGCCAG----GAGTTGCCCCTGCCACCGCCCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTC
droEug1 scf7180000409672:561877-562107 - GCA---------------------------------------------TTTTAATTAACTGCCTT-T--GTTAACCC--------------------------------------------------------------------------------ACG--------------------------------------------------------CC-----TG-----------------------------------CCCGCATTAACC-CATTTAG----------------------CCT--------------------------------GAGTCTG---------------AGA-----------------------------------------GCAGCCAG----GAGCTGCCTCTGCCACCGCCTCCCTCGCCCACCCAGCTGCTGCAGTACGAGGCGGAGCAATTGCA------------GCAAGTCCCCCCGGAGCAACACCTGTCCACTACCCAGCAGCAACA---------GCATCAGCATAAGCAGGAGCACACACGCACCCACAGCAGCCTG-----------------------------------------------------------TC
dm3 chr2R:11662821-11663068 - GCA---------------------------------------------TTTTAATTAACCGCCTT-T--GTTAATCC-------------------------------------------------------------------------------CCCG--------------------------------------------------------CC-----TG-----------------------------------CCCGCATTAACC-CATTTAG----------------------CCT--------------------------------GAGTCTG---------------AGA-----------------------------------------GCAGCCAG----GAGTTGCCCCTGCCACCGCCCCCCTCGCCCACCCAGCTGCTGCAGTACGAGGCGGAGCA------------------GCAAGTCCTCCCGGAGCCACACATGTCCACCATCCAGCAGCCGCA---------GCAGCAGCAGAAGCTGGAGCACACTCGCACCCACAGCAGCCTG-------------------------------------TCATCCATTTCCAGTGGCTCCTCC
droSim2 2r:12329111-12329213 - GCA---------------------------------------------TTTTAATTAACCGCCTT-T--GTTAACCC-------------------------------------------------------------------------------CCCG--------------------------------------------------------CC-----TG-----------------------------------CCCGCATTAACC-CATTCAG----------------------CCT--------------------------------GAGTCTG---------------AGA-----------------------------------------GCAGCCAG----GAGTTGCCCCTGCCACCGCCCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTC
droSec2 scaffold_1:9156568-9156670 - GCA---------------------------------------------TTTTAATTAACCGCCTT-T--GTTAACCC-------------------------------------------------------------------------------CCCG--------------------------------------------------------CC-----TG-----------------------------------CCCGCATTAACC-CATTTAG----------------------CCT--------------------------------GAGTCTG---------------AGA-----------------------------------------GCAGCCAG----GAGTTGCCCCTGCCACCGCCCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTC
droYak3 2R:17324037-17324279 + GCA---------------------------------------------TTTTAATTAACCGCCTT-T--GTTAACCC--------------------------------------------------------------------------------CCG--------------------------------------------------------CC-----TG-----------------------------------CCCGCATTAACC-CATTTAG----------------------CCT--------------------------------GAGTCTG---------------AGA-----------------------------------------GCAGCCAG----GAGTTGCCCCTGCCACCGCCCCCCTCGCCCACCCAGCTGCTGCAGTACGAGGCGGAGCA---GCAGCAGCAGCAACAGCAAGTCCTTCCGGAGCAACACATGTCCCCCATCCAGCAGCAGCAC------CAGCAGCATCAGAAGCAGGAGCACACTCGCACCCACAGCAGCCTG-----------------------------------------------------------TC
droEre2 scaffold_4845:14199770-14200006 + GCA---------------------------------------------TTTTAATTAACCGCCTT-T--GTTAACCC--------------------------------------------------------------------------------CCG--------------------------------------------------------CC-----TG-----------------------------------CCCGCATTAACC-CATTTAG----------------------CCT--------------------------------GAGTCTG---------------AGA-----------------------------------------GCAGCCAG----GAGTTGCCCCTGCCTCCGCCCCCCTCGCCCACCCAGCTGCTGCAGTACGAGGCGGAGCA---GCA------------GCAAGTCCTTCCGGAGCAACACATGTCCACCATCCAGCAGCAGCAGCAACAGCAGCAGCAGCAAAAGCAGGAGCACACTCGCACCCACAGCAGCCTG-----------------------------------------------------------TC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
GCA---------------------------------------------TTTTAATTAACTGCCTT-T--ATTAACTGTGCATCCATTTACATGCC----------------------------------------------AT-----GCCCGCCC---GCCTGCCTGCCTGCCTGCCTGCCTCTTGTTGCGC--------------CACTCCCCGCC-CGCCC-------------CCTCCATAAAAAACA----CGCGCTCGTATTAACA-CATT-AGT----CCGAGCCAATGCCTGAGCTC-----GAACCAGCGCCA---------GCGCCAGCGCC----------------------GGAGCCGG---AGCAGGAGT--TGACTGC-----CAGCAGCTGCCAC----GAGCTGCCGCTGCCGCCGCCGCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................................................CAGCGCCA---------GCGCCAGCGCC----------------------GG............................................................................................................................................................................................................................................................................................2114.004020200
...............................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGCCGCTGCCGCCGCCGC.....................................................................................................................................................................................................................2211.001100000
..........................................................................................................................................................................................................................................................................................................TGAGCTC-----GAACCAGCGCCA---------GC.............................................................................................................................................................................................................................................................................................................................2111.001000001
...............................................................................................................................................................................................................................................................................................................TC-----GAACCAGCGCCA---------GCGCC..........................................................................................................................................................................................................................................................................................................................1911.001100000
................................................................................................................................................................................................................................................................................................................................................................................CCGG---AGCAGGAGT--TGACTGC-----CAGCA.......................................................................................................................................................................................................................................................2511.001100000
...............................................................................................................................................................................................................................................................................................................................................................................GCCGG---AGCAGGAGT--TGACTGC-----CAGCA.......................................................................................................................................................................................................................................................2611.001100000
droVir3
GCA---------------------------------------------TTTTAATTAACTGCCTT-T--ATTAACTGTGCATCAATTTACATGCCTCCCACCCGCT----AACCG--------CTGTTGCTCATGTGCGTGAC-----GTCCGCCC---GCCCGCCTGCCTGCCTGCCC--------------------------------------------C-------------GCCCATTA----ACA----CGCGCTCGTATTAACA-CATT-AGT----CCGAGCCAATGCCAG--------------------------------------AGCCTG---------------AC-----------------------------TGCAGCATCAGCAGCAGCAGC----GAGCTGCCCCTGCCGCCGCCACC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................TTACATGCCTCCCACCCGCT----AACCG--------CTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCCCCTGCCGCCGCCACC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...2211.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................AG--------------------------------------AGCCTG---------------AC-----------------------------TGCAGCATCA..........................................................................................................................................................................................................................................................2011.001100000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................T-AGT----CCGAGCCAATGCCAG--------------------------------------AGCCT...................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000100000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................GCCTG---------------AC-----------------------------TGCAGCATCAGC........................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................CAG--------------------------------------AGCCTG---------------AC-----------------------------TGCAGCATCAGCAGC.....................................................................................................................................................................................................................................................2611.001000000000000000010000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCAGCAGCAGC----GAGC.......................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................TAACTGTGCATCAATTTACATGCCTCCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................CAG--------------------------------------AGCCTG---------------AC-----------------------------TGCAGCATC...........................................................................................................................................................................................................................................................2011.001100000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................GCAGCATCAGCAGCAGCAGC----...........................................................................................................................................................................................................................................20200.051000000000000000000000010000000000000000000000000000000000000000
droGri2
GCA---------------------------------------------TTTTAATTAACTGCCTT-T--ATTAACTGTGCATCAATTTACATGCTTGTT-CCCGCT----ACCCGTTCTTGTGTTGTTGCTCACATGCCTGATGGACA--------CCCGTTTGCCCGTTTGCCTGC----------------------------------------T-----CGCTCGTTCGCCCTGCCTATTA----ACA----CGCGTACGTATTAACA-CATT-AGT----CCGAGCCAATGCCAA-----TGCAAG---CGCCA------------------GAGCCTG---------------AGAGCAGCAGCAA--------------------------CAGCAA----CAGCATTGAGCTGCCTCTGCCACCGCCACC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
................................................................................................................................................................................................................................................................................................................................................................................GCAA--------------------------CAGCAA----CAGCATTGA.........................................................................................................................................................................................................................................1920.50110
droWil2
ACA---------------------------------------------ACACACACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACACCGACG-CACA-CATCTATCAGAGCAA------CATCAC--------------------------------AAACCAACCACCACCGTCACCATCACCACCACCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCACCATCAC----CCATCTCCAACACT--G---------------CCGTCG--------------------------CCGCCGCCGCCGCCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................................................................................................................................................................................CACCACCGTCACCATCACCACCACC........................................................................................................................................................................................................................................................................................2511.00100010
..........................................................................................................................................................................................................................................................................................................................................................ACCACCGTCACCATCACCACCACC........................................................................................................................................................................................................................................................................................2411.00100010
dp5
GCA---------------------------------------------TTCTCATTAACTGCCTT-T--ATTAACCCGAGTTCTGTTTCCGTGTATCCCGCCGAATCCTGAATC------------------------------------------CATGCCT----GCCTG------------------------C--------------------------T-------------GCCCATTA----ACATGCCTGTGCTCGCATTAACA-CATT-AGC----CCGAACCCGAGCCAGAGCCT--------------------------------GAGCCAGAGGTCGT----------A-----------------------------------------GAAGCCGGTGGCGAGCTGCCACTGCCGCCACCGCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................................................CGT----------A-----------------------------------------GAAGCCGGTGGCGAGCTGC....................................................................................................................................................................................................................................2311.0010100000000
....................................................................................................................................................................................................................................................................................................................................................CCAGAGGTCGT----------A-----------------------------------------GAAGCCGGT..............................................................................................................................................................................................................................................2111.0010000000010
...................................................................................TGTTTCCGTGTATCCCGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010000
droPer2
GCA---------------------------------------------TTCTCATTAACTGCCTT-T--ATTAACCTGAGTTCTGTTTCCGTGTATCCCGCCGAATCCTGAATC------------------------------------------CATGCCT----GCCTG------------------------C--------------------------T-------------GCCCATTA----ACATGCCTGTGCTCGCATTAACA-CATT-AGC----CCGAACCCGAGCCAGAGCCT--------------------------------GAGCCTGAGGTCGT----------A-----------------------------------------GAAGCCGGCGGCGAGCTGCCACTGCCGCCACCGCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................................................................................................................................................................................................................CAGAGCCT--------------------------------GAGCCTGAGGT..............................................................................................................................................................................................................................................................................................................1911.001010000
............................................................................................................................................................................................................................................................................................................................................................CGT----------A-----------------------------------------GAAGCCGGCGGCGAGCT......................................................................................................................................................................................................................................2111.001010000
.................................................................................................................................................................................................................................................................................................................................................GAGCCTGAGGTCGT----------A-----------------------------------------GAAGCC.................................................................................................................................................................................................................................................2111.001100000
droAna3
CCC---------------------------------------------TGGCCGCCAACCTG-TC-C--GCCAGCTC---------------------------------------------------------------------------------GGCCTGCTCCTCCTCCAAC-T------CGCTG------GTGAACAGCAGCACCTCCAGCCTCGGCT-------------CCCCGCAG----CAGCAC------------------------------------------CAG-----CACCAG---CAGCAACAGATTCAACTG-----C-----A---------------ACAGCAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCA---------GCAGCAGCGAGTGCAGCAGCAA--------------CAGCGCGAGAGCCTGGCCACTGCCATGGCGGCTGGGATGCGGCACCATCCGCTCCTGCCGCCACCGGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................................................................................................A---------------ACAGCAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCA---------GCAGCA..................................................................................................25200.153000003
.........................................................................................................................................................................................................................................................................................................................................................................AGCAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCA---------GCAGC...................................................................................................21200.102000002
............................................................................................................................................................................................................................................................................................................................................................................AAC----------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCA---------GCAGC...................................................................................................18200.102020000
............................................................................................................................................................................................................................................................................................................................................................................AAC----------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCA---------GCAGCAGC................................................................................................21200.102020000
............................................................................................................................................................................................................................................................................................................................................................................AAC----------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCA---------GCAGCAGCG...............................................................................................22100.101010000
........................................................................................................................................................................................................................................................................................................................................................................CAGCAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCA---------GCAG....................................................................................................21200.051100000
.........................................................................................................................................................................................................................................................................................................................................................................AGCAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCA---------GC......................................................................................................18200.051100000
.......................................................................................................................................................................................................................................................................................................................................................A---------------ACAGCAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCA---------GCAGC...................................................................................................24200.051010000
.........................................................................................................................................................................................................................................................................................................................................................................AGCAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCA---------GCAGCA..................................................................................................22200.051000100
.................................................................................................................................................................................................................................................................................................................................................C-----A---------------ACAGCAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCA---------GC......................................................................................................22200.051000001
...........................................................................................................................................................................................................................................................................................................................................G-----C-----A---------------ACAGCAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGC..................................................................................................................20200.051010000
droBip1
GAG---------------------------------------------CTGGAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGG-----AGCTGG---CGGCGGCA---------GC----------G---------------GTGGCGGCGGCGGCGGAGGAGGCATTCGGATAGC-----CAGCAATCTGCAC----AAGCAGC--CCGGCGATCTGGGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACSizeHit CountTotal NormTotal
No Reads
droKik1
GCA---------------------------------------------TTTTAATTAACTGCCTT-TGTTTTAACCC--------------------------------------------------------------------------------CCCTTTGCCTGCCTGTCTGCCTGAC------------------------------------------------------------TTT----ACC----CGCGTCCGCATTAACCCCATTCAG----------------------CCT--------------------------------GAGCCCG---------------AGA-----------------------------------------CCAGTCAG----GAGCTCCCTTTGCCACCGCCGCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCSizeHit CountTotal NormTotal
No Reads
droFic1
GCA---------------------------------------------TTCTCATTAACTGCCTTTTGTATTAACCC--------------------------------------------------------------------------------CTTGTTG--------------------------CGCCTGC-------------TCCCCGCC-----TG-----------------------------CCTGTG-TCGCATTAACC-CATTTAG----------------------CCT--------------------------------GAGTCTG---------------AGA-----------------------------------------GCAGCCAG----GAGTTGCCCCTGCCGCCACCCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCSizeHit CountTotal NormTotal
No Reads
droEle1
GCA---------------------------------------------TTTTAATTAACTGCCTTTT--GTTAACCC--------------------------------------------------------------------------------CCGCCTGCCTGCATGCCTG----------------------------------------CC-----TG-----------------------------------CCCGCATTAACC-CATTTAG----------------------CCT--------------------------------GAGTCTG---------------AGA-----------------------------------------GCAGCCAG----GAGTTGCCTTTGCCACCGCCCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCSizeHit CountTotal NormTotal
No Reads
droRho1
GCA---------------------------------------------TTTTAATTAACTGCCTT-T--GTTAACCC--------------------------------------------------------------------------------TTGCCT----GCCTGCTCGCCT---------------------------------------------------------------------------------CCCGCATTAACC-CATTTAG----------------------CCT--------------------------------GAGTCTG---------------AGA-----------------------------------------GCAGCCAG----GAGTTGCCTCTGCCACCGCCCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCSizeHit CountTotal NormTotal
No Reads
droBia1
TTTTAGTTCATCAGCCGTAGGTTGTGTGCCACTTGCCTTGCTCGTGCATT-CAATTAACCGCCTTTT--GTTAACCC--------------------------------------------------------------------------------CCGCCCGCCCG-------------------------------------------------C-----TG-----------------------------------CCCGCATTAACC-CATTTAG----------------------CCT--------------------------------GAGTCTG---------------AGA-----------------------------------------GCAGCCAG----GAGCTGCCCCTGCCACCGCCCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCSizeHit CountTotal NormTotal
No Reads
droTak1
GCA---------------------------------------------TTTTAATTAACTGCCTTTT--GTTAACCC--------------------------------------------------------------------------------CCGCCTGCCTGCCTTCCCGC----------------------------------------C-----CG-----------------------------------CCCTTATTAACC-CATTTAG----------------------CCT--------------------------------GAGTCTG---------------AGA-----------------------------------------GCAGCCAG----GAGTTGCCCCTGCCACCGCCCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCSizeHit CountTotal NormTotal
No Reads
droEug1
GCA---------------------------------------------TTTTAATTAACTGCCTT-T--GTTAACCC--------------------------------------------------------------------------------ACG--------------------------------------------------------CC-----TG-----------------------------------CCCGCATTAACC-CATTTAG----------------------CCT--------------------------------GAGTCTG---------------AGA-----------------------------------------GCAGCCAG----GAGCTGCCTCTGCCACCGCCTCCCTCGCCCACCCAGCTGCTGCAGTACGAGGCGGAGCAATTGCA------------GCAAGTCCCCCCGGAGCAACACCTGTCCACTACCCAGCAGCAACA---------GCATCAGCATAAGCAGGAGCACACACGCACCCACAGCAGCCTG-----------------------------------------------------------TCSizeHit CountTotal NormTotal
No Reads
dm3
GCA---------------------------------------------TTTTAATTAACCGCCTT-T--GTTAATCC-------------------------------------------------------------------------------CCCG--------------------------------------------------------CC-----TG-----------------------------------CCCGCATTAACC-CATTTAG----------------------CCT--------------------------------GAGTCTG---------------AGA-----------------------------------------GCAGCCAG----GAGTTGCCCCTGCCACCGCCCCCCTCGCCCACCCAGCTGCTGCAGTACGAGGCGGAGCA------------------GCAAGTCCTCCCGGAGCCACACATGTCCACCATCCAGCAGCCGCA---------GCAGCAGCAGAAGCTGGAGCACACTCGCACCCACAGCAGCCTG-------------------------------------TCATCCATTTCCAGTGGCTCCTCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGTACGAGGCGGAGCA------------------GCAAG.........................................................................................................................................................24110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.....................................................................................................................................................................................................................................................................................TAG----------------------CCT--------------------------------GAGTCTG---------------AGA-----------------------------------------GCAGC..................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................CT--------------------------------GAGTCTG---------------AGA-----------------------------------------GCAGCCAG----GA.........................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACGAGGCGGAGCA------------------GC............................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCCTCCCGGAGCCACACATGTC...................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................TTAACC-CATTTAG----------------------CCT--------------------------------GAGTCT...................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................AG----------------------CCT--------------------------------GAGTCTG---------------AGA-----------------------------------------GCAGCATC----...........................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------------------GCAAGTCCTCCCGGAGCC............................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTGGAGCACACTCG.............................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA------------------GCAAGTCCTCCCGGAGC.............................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.................................................................................................................................................................................................................................................................................CATTTAG----------------------CCT--------------------------------GAGTCTG---------------AGA-----------------------------------------A......................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGGCGGAGCA------------------GCAAGTCC......................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-------------------------------------TCATCCATTTCCAGTGGC......2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCGCA---------GCAGCAGCAGAAGC..........................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCAGTACGAGGCGGAGCA------------------G.............................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................C-CATTTAG----------------------CCT--------------------------------GAGTCTG---------------AGA-----------------------------------------.......................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCACACTCGCACCCACAGCAGCC...............................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGTACGAGGCGGAGCA------------------G.............................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGCTGGAGCACAC................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGGCGGAGCA------------------GCAAG.........................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGTACGAGGCGGAGC.................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
................................................................................................................................................................................................................................................................................................................T--------------------------------GAGTCTG---------------AGA-----------------------------------------GCAGCCAG----GAGTTGCCCC.................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCTG-------------------------------------TCATCCATTTCCA...........1911.0010000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGCGGAGCA------------------GCAAGTC.......................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCACCATCCAGCAGCCGCA---------........................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGAAGCTGGAGCACACTCG.............................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCCTG-------------------------------------TCATCCAT................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTGCTGCAGTACGAGGCG.....................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCACCGCCCCCCTCGCCCAC...........................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACCATCCAGCAGCCGC..................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTGGAGCACACTCGCACC.........................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................CCGCCTT-T--GTTAATCC-------------------------------------------------------------------------------CCCG--------------------------------------------------------C.................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGCTGGAGCACACTCG.............................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................GTCTG---------------AGA-----------------------------------------GCAGCCAG----GA.........................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................TG---------------AGA-----------------------------------------GCAGCCAG----GAGTTGCCCCTGC..............................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGGAGCACACTCGCACC.........................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGAAGCTGGAGC....................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGAGGCGGAGCA------------------GCAAGTCCTCCC..................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................AGCCAG----GAGTTGCCCCTGCCACC..........................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................CGCATTAACC-CATTTAG----------------------CCT--------------------------------GAGT.....................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AG----GAGTTGCCCCTGCCACC..........................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................T--------------------------------GAGTCTG---------------AGA-----------------------------------------GCAGCCA................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................A-----------------------------------------GCAGCCAG----GAGTTGCCCCTGC..............................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCTGCAGTACGAGGCGGAGCA------------------GC............................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGCTGGAGCACACTC..............................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAGCAGCCGCA---------GCAGC...................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCCGCA---------GCAGCAGCAG..............................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droSim2
GCA---------------------------------------------TTTTAATTAACCGCCTT-T--GTTAACCC-------------------------------------------------------------------------------CCCG--------------------------------------------------------CC-----TG-----------------------------------CCCGCATTAACC-CATTCAG----------------------CCT--------------------------------GAGTCTG---------------AGA-----------------------------------------GCAGCCAG----GAGTTGCCCCTGCCACCGCCCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
GCA---------------------------------------------TTTTAATTAACCGCCTT-T--GTTAACCC-------------------------------------------------------------------------------CCCG--------------------------------------------------------CC-----TG-----------------------------------CCCGCATTAACC-CATTTAG----------------------CCT--------------------------------GAGTCTG---------------AGA-----------------------------------------GCAGCCAG----GAGTTGCCCCTGCCACCGCCCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................................................................................................................................................................................................TG---------------AGA-----------------------------------------GCAGCCAG----GAGTTGCCCCTGC..............................................................................................................................................................................................................................2611.0010010
droYak3
GCA---------------------------------------------TTTTAATTAACCGCCTT-T--GTTAACCC--------------------------------------------------------------------------------CCG--------------------------------------------------------CC-----TG-----------------------------------CCCGCATTAACC-CATTTAG----------------------CCT--------------------------------GAGTCTG---------------AGA-----------------------------------------GCAGCCAG----GAGTTGCCCCTGCCACCGCCCCCCTCGCCCACCCAGCTGCTGCAGTACGAGGCGGAGCA---GCAGCAGCAGCAACAGCAAGTCCTTCCGGAGCAACACATGTCCCCCATCCAGCAGCAGCAC------CAGCAGCATCAGAAGCAGGAGCACACTCGCACCCACAGCAGCCTG-----------------------------------------------------------TCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAAGTCCTTCCGGAGC.............................................................................................................................................2011.00100100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGTACGAGGCGGAGCA---GCAGC........................................................................................................................................................................2411.00100010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAAGTCCTTCC..................................................................................................................................................1911.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAC------CAGCAGCATCAGAAGCAG........................................................................................2211.00100000010000
..................................................................................................................................................................................................................................................................................................................................................AGTCTG---------------AGA-----------------------------------------GCAGCCAG----GA.........................................................................................................................................................................................................................................1911.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCCTTCCGGAGCAACACA.......................................................................................................................................2111.00100010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAAGTCCTTCCGGA...............................................................................................................................................2011.00100100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAAGCAGGAGCACACTCGCAC..........................................................................2311.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAC------CAGCAGCATCAGAAGCAGGA......................................................................................2511.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCCTGCCACCGCCCCCCT..................................................................................................................................................................................................................2111.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCATCAGAAGCAGGA......................................................................................1920.50100000010000
droEre2
GCA---------------------------------------------TTTTAATTAACCGCCTT-T--GTTAACCC--------------------------------------------------------------------------------CCG--------------------------------------------------------CC-----TG-----------------------------------CCCGCATTAACC-CATTTAG----------------------CCT--------------------------------GAGTCTG---------------AGA-----------------------------------------GCAGCCAG----GAGTTGCCCCTGCCTCCGCCCCCCTCGCCCACCCAGCTGCTGCAGTACGAGGCGGAGCA---GCA------------GCAAGTCCTTCCGGAGCAACACATGTCCACCATCCAGCAGCAGCAGCAACAGCAGCAGCAGCAAAAGCAGGAGCACACTCGCACCCACAGCAGCCTG-----------------------------------------------------------TCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCTGCAGTACGAGGCGGAGC.................................................................................................................................................................................2411.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACGAGGCGGAGCA---GCA------------GC............................................................................................................................................................2111.0010000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAAAAGCAGGAGCACACTCG.............................................................................2611.0010000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGTACGAGGCGGAGCA---GCA------------GCAA..........................................................................................................................................................2611.0011000000
.................................................................................................................................................................................................................................................................................................................................................GAGTCTG---------------AGA-----------------------------------------GCAGCCAG----GA.........................................................................................................................................................................................................................................2011.0010000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAGCAAAAGC..........................................................................................2220.5010001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAACAGCAGCAGCA..................................................................................................25200.0510001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCAGCAGCAGCAACAGC.........................................................................................................20200.0510000010

Generated: 05/17/2015 at 11:20 PM